LOCUS       DARAII010000001        49053 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.001, whole genome shotgun sequence.
ACCESSION   DARAII010000001 DARAII010000000
VERSION     DARAII010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 49053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 49053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..49053
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.001"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..120
                     /gene="ruvA"
                     /locus_tag="SB143_000001"
     CDS             <1..120
                     /gene="ruvA"
                     /locus_tag="SB143_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831785.1"
                     /note="plays an essential role in ATP-dependent branch
                     migration of the Holliday junction; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEF9748580.1"
                     /translation="ALAALLSLGFKQDKILSVLSTCNGKDTSELIKEALKKLA"
     gene            130..1170
                     /locus_tag="SB143_000002"
     CDS             130..1170
                     /locus_tag="SB143_000002"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEF9748581.1"
                     /translation="MKLAILFGGNSYEHEISIVSAVVLKKVINTDLTFIFCDEKRRFY
                     LIPSEKMNSKTFSGGAYQKEKELFLRQKAFYHKSLWSEKNLDLDCVINLIHGRDGEDG
                     KIASLLEFFDIKFIGPRVEASVLSFNKEFTKLYAQSVGVKTLDYQMLRKSQKQDFTAH
                     FPCILKPARLGSSIGISIAKNEKELDYAKDVGFEFDTDILVEDFKSNIKEYNLAGCMI
                     KDEFIFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKQKLKDNFAKIYNPLF
                     KGALIRCDFFILDNEVYLNEINPNPGSLANYLFKDFNKIIEQLALSIESEKKIKITYE
                     FLHSINGQKGKL"
     gene            1230..1445
                     /locus_tag="SB143_000003"
     CDS             1230..1445
                     /locus_tag="SB143_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEF9748582.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPLIEKLKKSESGKMVILKNNKFEA
                     VLLSMKEFERLQNAMQLLENIYKNQKV"
     gene            1447..2178
                     /locus_tag="SB143_000004"
     CDS             1447..2178
                     /locus_tag="SB143_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEF9748583.1"
                     /translation="MALVNVIYNNDTYELSYEILNQDKKKSLLILHGWGANKELMKQA
                     FSKNLNDFCQIYLDLPGFGNSSAPKSLYSQDYVNIIKEFLKEKKLDIDIFLGHSFGGK
                     IAALLVLDFQKAQLVLLSNSGILAKKSFKVRFKIMLFKFLKKLGLGRFYRYFASKDGA
                     NLNPLMYQTFKNVVDEDLSQTFAKIDNKSLIFWGIDDKATPLKSGEAMHKLIKNSEFY
                     PLEGDHFFFLKHSLFIANKIKENQC"
     gene            2172..3599
                     /locus_tag="SB143_000005"
     CDS             2172..3599
                     /locus_tag="SB143_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEF9748584.1"
                     /translation="MLTNTLYFINSLFFNFCVAFYLMSALQWYSYKFKRVFFHYHRPL
                     WHLYFLFLPYFFFLTFPLYSLAYFALIHTPILYFWNKSIDKKLVFTSKVKWFFVFVFI
                     YNTLFAILALRFSFLFNLFALPFALISLKIFELFSNLYFKNKAKAKLQNNPQLKIILI
                     TASFGKTSIKNFLYELLKDDFKTYKTPRSVNTLLGIIADINTNLSDDTQIYIAEAGAR
                     VKGDIDVITRFLEPQICIVGEIGNAHLEYFKNIENTRKTKLEALNSKRLEKAFLHTST
                     QKSEDELILLYDDKLQDIQASLQGLEFKINLENKTYEFKSQILGDFNAQNLCACILCA
                     NYLGVKIGKIQKQVLKINSVEHRLQIISKEPKFIIDDGFNGNYKGMSASYKLCKNYKG
                     RKVLVSPGIVEVDKDENVKLAKIINKCFDLAIITAQVNADIFKKELKIKTIILKEKAD
                     LVKVLAKETQQGDLILFSNDAPSFM"
     gene            3748..7257
                     /locus_tag="SB143_000006"
     CDS             3748..7257
                     /locus_tag="SB143_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HEF9748585.1"
                     /translation="MQKNSFLKIYGLIPFLLVAFINAFVDLGHKIIIQNTIYKVYEGS
                     TQLLLTAIVNALILLPFILMLSPSGFLADKYPKNLIMKLSAVFSVILTIIICISYYNG
                     AFWTAFTLTFIMGIQAALYSPSKYGFIKELVGKDLLAMGNGAVNAVSIVAILAGMSLF
                     SLSFESLYDINHNSSEEVLKQVAPLGFLLILFSLIELYLAWRLPKLKDEIKELKFDSK
                     RYLSGKLLMSNLKLIFGNKVIWLCIVGISIFWAISQLYLVSFPVFSKNELFIENTFFV
                     QVSLGFSGIGVVLGSLIAGRFSKNYIELGLIPFGALGVFLMALIMPYFTSLITYSFIF
                     FIFGFCGALFIIPLNSLIQFHAKENELGKILAGNNFIQNIAMLTFLVLATLFANLEIN
                     VIYLFYFITLVAFLGAIYVVFKLPFSLVRMLLSIAFLGRYRLLVEGFKNIPEKGGALL
                     LGNHISFIDWAIVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGVIPVSSAASKASLEL
                     IAERIKQGDLVCLFPEGVLSRHGQLNEFKGGFEHVCSNLEEDDGVILPFYIRGLWGST
                     FSRSDEEFSARNRTLSKRNIAIAFGAPMSLHSKKEEVKAKVFELSFTAWKSQCEAMHT
                     IARAFITSAKRNLSNIAIIDSLAGAISYRKLLSLSFILSTLIKENSKKINSNFERGSY
                     APKEECVGILLPASFASSLLNLSVLLAQKIVVNLNFTAGEKALQAAVKSAQISQIYTS
                     KKFLEKLESKGVSLNFGEEVNLIYMEDVVEIFKKQKSKILAMMMAVSILPSFILKAIF
                     APSKNNLAIAAILFSSGSEGTPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLESIKSITFADPTDALGIAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDAIMFESLRVVVSGAEKLKSEVRSAFEMKFKKSIFEGYGATETTPVASVNLPNRFDA
                     DYWIVHRASKEGSVGMPLPGTAVRIVDPNTYETLKTNEDGLILIGGHQVMVGYLNNKE
                     KTDEVIKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGALEEEIAKF
                     IDTNIVKFCTVALEDEKKGEQVALLIECDEEFFEGVCEAIKSSSMPAIFKPSRYLKVE
                     KIPLLGSGKVDLKGAKELAKSLV"
     gene            complement(7336..8247)
                     /locus_tag="SB143_000007"
     CDS             complement(7336..8247)
                     /locus_tag="SB143_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEF9748586.1"
                     /translation="MFIFSPLFTIFILLAGGYFAKRVGILKQKQARTFLDFAIVFALP
                     CLIFDKAYHLNFDFSLVVLIFIGFFSCALAAFIVVFLGFIFNFSKATLVSMFLLSCFG
                     NTIFVGMPIVEGIFANAQFGAEVILYDALATTLPISLLGPFILSLGSGEKVSLVANIK
                     KILSFPPFLALLLGFLCKLISLPEFIFSPIRLFGGAATPVALFAIGLGLGFMAIKTAY
                     KPTILVILAKMVLAPLIFVLLLKLFGFEMKASIIVAIIESATPTMTLAGAMVMKAKLD
                     SNLAVSTVAFGVLFAFISMPILVWALA"
     gene            complement(8404..9228)
                     /gene="purU"
                     /locus_tag="SB143_000008"
     CDS             complement(8404..9228)
                     /gene="purU"
                     /locus_tag="SB143_000008"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEF9748587.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEEMFFF
                     RAILEGEFDKKAFIGTLEAMLGEEAYIELCEKRKKDIIVFATKESHCLGDLLIKYYSN
                     ELEANIKAVISNHDTLKNLVEKFEIPYHCISAENLKREEQEKQVLECLKEYQFDYLVL
                     AKYMRILSPDFVKHFEGKIVNIHHSFLPAFVGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVLPVSHEYTWQDMQQAGRNVEKNVLSKALDLVFDDRIFIHKNKTIVF"
     gene            complement(9229..10344)
                     /locus_tag="SB143_000009"
     CDS             complement(9229..10344)
                     /locus_tag="SB143_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEF9748588.1"
                     /translation="MQTSKISLKNNADLKFVIDFLSPYTQRAYLVGGSVRDLFLGLEI
                     YDYDIELYDITPSDFEKMMKKLGAQGFGKSFFVYKFKNYDFALARTENKTGYGHTGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLEQGILRHIDQTSFQEDSL
                     RILRAVAFASRFDFKIADESLKLMQSMNIKDLSRDRINAELYKFFKSSKLEVGYKYLQ
                     ELNMEKEIFGFDSAFKSMEFQALLRKSREVVKDDALFLYLYLNFFNLNKEEFFKKSKI
                     KKEYFKKANQAFYLDEMSDFDLASIALDMPLKEWLGLWDKERIKWAKKFKLYENKFKT
                     SILAKDFLDAGIYGKMLGLKLKEARENELYEYIKRLN"
     gene            complement(10313..10810)
                     /locus_tag="SB143_000010"
     CDS             complement(10313..10810)
                     /locus_tag="SB143_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEF9748589.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQSEILKEQEELRKTQIQEDMP
                     TVKLKEEPILEQELEDKISMAKFEEEQKIQEEIKNLDELNQENKEPVKEEAVLQSEIL
                     NPSIIAEVQTLNEDIFLKHLRERILVLFEGLNSVKEENLEHRLQLTINFLEFLLANIE
                     DKLKK"
     gene            complement(10807..11055)
                     /locus_tag="SB143_000011"
     CDS             complement(10807..11055)
                     /locus_tag="SB143_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEF9748590.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPNNQNAIDAVRR
                     LSGFRSKHQDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(11099..11680)
                     /locus_tag="SB143_000012"
     CDS             complement(11099..11680)
                     /locus_tag="SB143_000012"
                     /inference="COORDINATES: protein motif:HMM:NF013933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEF9748591.1"
                     /translation="MDYTLFILTFVSVSLLPGLCMSLAFSLGLSLGYKNTLWMIFGEL
                     VGLALVVLCCALGIEFILRYENLFKFFQIAGALYLLYIAFILFKSKSQITQEKIIHKK
                     KFSLIIQGFIASSSNPKAWIFMFSILPSFLKFQVNVNILLLIILLIEFCSLSLYALGG
                     SIFKIFMNKHLDKINKISALFIFAMALSVLYKV"
     gene            complement(11680..12000)
                     /locus_tag="SB143_000013"
     CDS             complement(11680..12000)
                     /locus_tag="SB143_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEF9748592.1"
                     /translation="MLDKNILYAILAASLATYLTRVLAFILFKNKKENYHLLFVQYNM
                     PLVIIIILFFYTFYEVDFYSYPYGLDFIVSCILVFLIHLLFKNALLSIILGTIFYMFV
                     LRLF"
     gene            complement(11990..12670)
                     /locus_tag="SB143_000014"
     CDS             complement(11990..12670)
                     /locus_tag="SB143_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEF9748593.1"
                     /translation="MKQRELFLLTIPVLMGYIPLGAAFGILAASKDFSLFEILLSSIF
                     IYAGAGQFLLVALVAQNVSFLMIFFTLFLLNFRHFFYTLSLLKELKSINFLRHYIIFA
                     LTDESFALLSSIKEKIKNLSRAQRSLIMFEVCLLNQIYWVIGSVLGYYFKQGLNIDYS
                     GVEFSLNALFIVLAYELYKQNPNLKILLYSSFVALFALFCIDKPYMLAFCIFIALMIL
                     IFGKKYVR"
     gene            complement(12667..12843)
                     /locus_tag="SB143_000015"
     CDS             complement(12667..12843)
                     /locus_tag="SB143_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748594.1"
                     /translation="MVFLIPLLIIIAIIFGIDYLYFNDENVKVKEERQIHKSDPNLDK
                     QREEYLKHLFKEKK"
     gene            complement(12857..13192)
                     /locus_tag="SB143_000016"
     CDS             complement(12857..13192)
                     /locus_tag="SB143_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEF9748595.1"
                     /translation="MNLSSVLIVAKVQHIDELKKEILKIPSCSIELCENEKIIVVIES
                     ESLEKELESYKMLEKLPHIISINMVFSYQDLDKDIQKAINSGAIQTIEKNENAENIRY
                     YGSIYNQMS"
     gene            complement(13179..14099)
                     /locus_tag="SB143_000017"
     CDS             complement(13179..14099)
                     /locus_tag="SB143_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEF9748596.1"
                     /translation="MKKILFILSFLYILSPAYELKLNSNITALKLDQQELYIGTDKGE
                     IYEYNLKDKSLKELLSLPKIKNYYEGDFARIYNIDVYQNSLLILSEGDFGAKNLSLYN
                     NNLQIQTLQESSVKEAFFIDENTYLLVLLGSKIELVDKDLKRINEFKFSHSSLNDAAL
                     NEEKTKFIAGFESGEVELFDLKSWKILKNYDKMHKDNIYQVDFKNDTLISCGTDRRIG
                     LVKNEEQTFLQKDFLIYTCALSPSGKLAAYSDNEEGFNEVFDTNTLKTVRIFKDENLM
                     SEIIIFINERELIISGFGDKIVFRSLDESF"
     gene            complement(14104..14628)
                     /locus_tag="SB143_000018"
     CDS             complement(14104..14628)
                     /locus_tag="SB143_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEF9748597.1"
                     /translation="MMKKKTILLGSVAIMFLAACALNSGVSSEQIGLRKASLENENKV
                     ALVDASFTALQPGESVLFERSFENAPPLISHTIEDMLPITKDNNTCLSCHDKAIATDV
                     GATPLPASHYYDFRTNKTTGDAISDSRFNCTQCHVPQSDAKPLVGNSFKAEFKNEGLK
                     NRSNLIDVINEGVE"
     gene            complement(14625..15410)
                     /gene="napH"
                     /locus_tag="SB143_000019"
     CDS             complement(14625..15410)
                     /gene="napH"
                     /locus_tag="SB143_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEF9748598.1"
                     /translation="MMRYLIARRIVQIGILALFSFKATDFILKGNLSSSRLFDTLPLS
                     DPFAVIQIYLASFSIDLMALMGALIVLILYGVFLGRAFCAWVCPVNLITDFAAFVRSK
                     MAFKQSKVLILSKNLRYYILALSLILSFVLSLPVFESMSYIGIIHRGIIFGTTSWIFI
                     AFILFCIDAFLSPRAICSHLCPLGAFYALISRFALLKIKHNHQKCTKCYKCIGICPEK
                     QVLWMIAKESASVNSGECIRCGRCVEVCNDDALNFNIFDLRKK"
     gene            complement(15407..16147)
                     /gene="napG"
                     /locus_tag="SB143_000020"
     CDS             complement(15407..16147)
                     /gene="napG"
                     /locus_tag="SB143_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEF9748599.1"
                     /translation="MKDRREFFASAFKGLCLCTAGGFLANLSLKADDDYALRPPGAED
                     EARFLSKCIRCGLCVKACPYNTLKLATLLDSAKNGTPFFKAREIPCYLCKDIPCIKEC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDQE
                     DEDRIKDADTSKYFDAKKATNYLNEGEF"
     gene            complement(16165..18939)
                     /gene="napA"
                     /locus_tag="SB143_000021"
     CDS             complement(16165..18939)
                     /gene="napA"
                     /locus_tag="SB143_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEF9748600.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSAPSPVFGAQEEEWKWDKAVCRF
                     CGTGCGIMIARKDGKIVAIKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMND
                     KGEFDKKGKFKQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKIVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDKKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVAKENAITLDEEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFEEFKKGLAPYTLEYTAKVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLG
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWITAARDMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DGKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKNFTSNDAVMKDYDNSEVKGDERK
                     IQGSDGKEFKGYGFFVQKYLWEEYRKFGLGHGHDLADFNTYHQVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGEFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPNEEYPFWLSTGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(19189..19716)
                     /gene="tpx"
                     /locus_tag="SB143_000022"
     CDS             complement(19189..19716)
                     /gene="tpx"
                     /locus_tag="SB143_000022"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEF9748601.1"
                     /translation="MSSVNFKGNPVKLKGNSVEVGADAPKVGLKAKDLSTIEIGAAGK
                     TQIVLSLPSLDTPVCATEAREFNKKVASYNGAEVVVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(19825..20562)
                     /locus_tag="SB143_000023"
     CDS             complement(19825..20562)
                     /locus_tag="SB143_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEF9748602.1"
                     /translation="MKKYLFLSLVAASFLNAEVLVYGPGGPAPVMKELALKFEEKTKE
                     KVVVTAGPTSSWFKKARKDADLIFSGNTSMMDGFIKRIPSLNLEDLVVLNARPSGIIV
                     RPNNPKNIKSFEDILKDNVNVMVVDGAGQVGLYEDMALKDGKRENLVKLRKNIKVYAK
                     NSKIAIDEWNNNPNIDALIIWSHWAKVLGDKALFIEDEKAAVYRTAEIIPTKKGLQNK
                     QALEFVKFIQSKEAQKIWKKHAWNEVE"
     gene            complement(20610..22640)
                     /locus_tag="SB143_000024"
     CDS             complement(20610..22640)
                     /locus_tag="SB143_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEF9748603.1"
                     /translation="MPLSRLNEEQYLAATANFGHNLIIASAGTGKTSTIVARISYLLS
                     QGVSPQKIMLLTFTNKASKEMISRLGKYFDKNITGKILAGTFHSTAYTLLKSANKDVV
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDIYSLFQNKAYDQDFYHWFCVNY
                     EDQSIYAEIYEDILKEYSEEKKRFNYVDFNDLLLNLKTLLNEKKYEFDEILVDEYQDT
                     NALQSSLIEAFESKSLFCVGDYDQSIYAFNGADINIIGGFKQRFKDAQIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRKDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGIEVALREQGIASVRKGSGSFFESLEVKAFSAMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGSLIRGFLEPDKSVNLQNHQKRNYQLG
                     LFADLEELASANRFKFESEFNAHPILKLSKINDLCAKNLEKIYFFLKKAMETKHSLAL
                     VNLICENSFYKEICEELAIKRATNKAGQVDLLRKKENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSNGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMSMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTAFTPSRFLIEAGLCKGELTID"
     gene            22762..23691
                     /locus_tag="SB143_000025"
     CDS             22762..23691
                     /locus_tag="SB143_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748604.1"
                     /translation="MNFKFFSIIVGILVVVILILSGTYYYLFEYSKPSYTPITQTSTE
                     QNQYSNNTHTTTQNSYVSDITNTNNENINLIQDKQDEKDANNIINDDNKSDTKSSQIT
                     KQNNEEKLAAIEKEISKQQKILEQEKIFKPQNTNNNKTNYQAKKLSPAQEYLSLGKNS
                     RLEPQLSTENMKVYVLDGKFLSDYRIKLLKDMLAIIEDNSKDYFLSVFVKMLPKGEMS
                     LTIYNKDIIFSDMKKSYKYISMDKISPYIKTPEVLNQYVAREEIIERFKLQTKKEGKG
                     SEFSKHINSLKTGLNKAQYFFPFCEIIEITSVK"
     gene            23716..26328
                     /locus_tag="SB143_000026"
     CDS             23716..26328
                     /locus_tag="SB143_000026"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEF9748605.1"
                     /translation="MYDKSIEKTYYQICEERGYFEIDGNKAIQEKNKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKIWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLANAVKKAFVELY
                     DKKLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYYLKDSDEYLVVATTRPET
                     FFGDTAVMVHPDDERYKQFIGKELILPLSNKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLEFISVFDEKGILNEHCLEFKGLERLEARDKIVAKLDSLGFIDKIEEH
                     NNQVGYCYRCNNIVEPYISKQWFVKQEIAKESIEKVALGESKFYPSHWVNSFNAWMKD
                     LRAWCISRQLWWGHQIPVYYCECSHEWASQDTPKACPKCGGQNFKQDEDVLDTWFSSG
                     LWAISTLGWGNDTWGKDKIWFEEDLKEFYPNSLLITGFDILFFWVARMMFQSTNALGA
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNEEQFEDLEKIELKSALAQFVYSRFQDCVKNVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAQKESVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSKSELKTSASIMISKYPQFHAKNSNIEEIFSLIIESIVSIRRAKSLVDLG
                     NSKIEKAYIKLNDKKMQDEIKSYMKFITMLAKCENIEFTENKLQKAICDVSENLEIFI
                     TLNNVDLSGILTRLENQKTKLEKESTKLNAMLSNEKFIANAPKEVVEQNKEALANLKT
                     QLEKISAELANLKG"
     gene            26334..27344
                     /locus_tag="SB143_000027"
     CDS             26334..27344
                     /locus_tag="SB143_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEF9748606.1"
                     /translation="MIKIQNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLESYQEGSLKVLDAEIKDLSQNNPKKLRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRMHYSQCKIYSKLFGKEYMSEKDLNQKVNSLLDVVGLDHKNKAYPRELSGGQKQ
                     RVAIARALTLNPKILLSDEATSALDPNTTKNILELIAKINAEFGITVVLVTHEMDVVK
                     DVAQKALLLEHGQIIGSGAIDELFLKPNEKMKEFLGESDFLPSTGLNIKLYFPKEVAQ
                     NSIITHMARTLNIDFNIVWGKIEKLNGNALGNLVINIDEKDKSKVLNYIEQSGVLWEV
                     VS"
     gene            27341..28270
                     /locus_tag="SB143_000028"
     CDS             27341..28270
                     /locus_tag="SB143_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9748607.1"
                     /translation="MNEVSIFDAFLGRISQFFTEFSWQGIKEVSLNSISTFAQNYENI
                     LKPALNETIYMSLMAVFFGFILAIIPGILLAIWDKNGIKHNKIAYAVLDFITNLLRAF
                     PFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEVDHGIIEAAK
                     SYGASNTQIIFKVIFNESLPNIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYGYE
                     RFNKEIMIQTVVILLVLVQLVQILGNLFYTWAKNSKTLYILATLIALFVISIIININN
                     NESFVWQAIILIVLALCFIYKFLKNKKLNPVLI"
     gene            28439..29212
                     /locus_tag="SB143_000029"
     CDS             28439..29212
                     /locus_tag="SB143_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEF9748608.1"
                     /translation="MNIKNLIVASFLGLAVNLTAAETISIAATPVPHVEILEQVKPEL
                     EKQGYKLEIKEFTDYVLPNLAVDSGEVDANFFQHTPYLEEFNKNKGTKLTKVANVHIE
                     PMAVYSKKYKSLDDIKEGATIAIPNDPTNESRALDIIAKKGLVEFKEKALKTPLDITT
                     NPKKIKFVELKAAQLPRALNDVDFAVINSNYALSANLNPAQDGVFIEDKESPYANILV
                     VKTGNENDPKIQALAKALQSEKVKQFIIEKYKGSILPAF"
     gene            29267..30037
                     /locus_tag="SB143_000030"
     CDS             29267..30037
                     /locus_tag="SB143_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEF9748609.1"
                     /translation="MKLFKIILLFCLLNLSPIFAKTITIGATPNPFASLLEKVKDDFK
                     DKGYELKIIEFSDYILPNRALEEKELDANLYQHKPFLEEYNAQKGTNLTPTTPVVIAP
                     VGIYSKTIKDLKNLKKGARVAIPNDATNESRALELLEKAGLIELNQNTLKTPLDIKKN
                     PKNLKFIELKAAQLPRALDDVDIAVINSNFALGAGLNPIKDTIFREDKNSPYVNYVVV
                     RFEDKDNEKTKIIDEILRSDKFRNIIDEHYKDVLIPAF"
     gene            30047..30823
                     /locus_tag="SB143_000031"
     CDS             30047..30823
                     /locus_tag="SB143_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEF9748610.1"
                     /translation="MKFKKILLSVFCITSFLFGAEKSIIIGATPTPYAEILNFAKPIF
                     KERGWNLEVKEFSDYNIPNISLNEKDLDANLYQHKPFLEDFNAHKGTKLSSLGSIVLV
                     PMAIYSNDIKDIKNIPNGAKIAIPNDATNESRALDLLAKAGLIEFKTSSTLKTPIDIS
                     KNPKNLKFIELKAAQLPRALNDVDLAVITTNYALGAGLNPLKDGIFIEDKDSLYAIVL
                     AVRQGDEKNEKSLILKEILTSDKIKNFINEQYKGSVIPTF"
     gene            30901..31563
                     /gene="flgA"
                     /locus_tag="SB143_000032"
     CDS             30901..31563
                     /gene="flgA"
                     /locus_tag="SB143_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEF9748611.1"
                     /translation="MRIISFIFFVFIGLSHGANLEEIKTALVKEFKNNFPSLIIKNID
                     LKITTLPKDFEQYQFIRIANARFNQAQGFIRAEFKTPQNIQKNVFFRYFMQASLEVLK
                     SERSIQRGDKLGAFDYKSVLMDFDKVPSNALALEDTHNLIAKSNISKNTILKENMFKT
                     MALIRRNDPIIGVLSDGNVDVLIELTALHSADMGERIRAKNKEGKVMQGIVTGKNRMI
                     IQ"
     gene            31560..32123
                     /locus_tag="SB143_000033"
     CDS             31560..32123
                     /locus_tag="SB143_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEF9748612.1"
                     /translation="MKILLGISGSSSTHLGLKLLKNLENKCELYCIITEGAKISFEAE
                     NKKNLEKICQEQFQNICFLNDNNLSASVASGSFSIEKTIIAPCSISSLAKIHAGLADT
                     LLMRAAAVALKERKSLILGVREMPFSTLILEHMHKLSQLGVIIAPPIIASYSHASNLE
                     QMENFIIGKWLDLLGISHNLYERWQNF"
     gene            32163..32639
                     /gene="coaD"
                     /locus_tag="SB143_000034"
     CDS             32163..32639
                     /gene="coaD"
                     /locus_tag="SB143_000034"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEF9748613.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDKVIVAIANSEHKKPCF
                     SLEQRKELAKLATSHLNNVEIITFDNLLVDLAKELKVNTIVRGLRAVSDFEYELQIGY
                     ANHALWEEIETIYLMPNLKNAFISSSIVRSIASHGGDISTLVPKEILPFLKDLPCM"
     gene            32630..33208
                     /locus_tag="SB143_000035"
     CDS             32630..33208
                     /locus_tag="SB143_000035"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEF9748614.1"
                     /translation="MYVVFEGVDCVGKSTQISLLKECFKEAVFTAEPGGTKLGNHLRE
                     LLLYKPYQLDKKTELLLFLADRAQHCEEILKANQDKLIISDRSFISGMAYAKDFENEE
                     LFRLNAFALENFFPQKVIFLKGDENLIKERLSQKEQDAIEKRGIDYFLSVQDKLENTL
                     YFLKEKINLQVLTLNANDTKENLHQKIKDFLQ"
     gene            33205..34431
                     /locus_tag="SB143_000036"
     CDS             33205..34431
                     /locus_tag="SB143_000036"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEF9748615.1"
                     /translation="MINALKGMKDLSDKDALYYEKIIKTCEEVAKNYGFNFINTPHLE
                     QSILFKRSVGESSDIVGKEMYEFTDKGGNEVCMRPEGTAGVVRAYIEKKLDKNISVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESFGMPSVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDELVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEYCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIIAILEQKEELEKREGIYLCAMDEIYIP
                     KLLQIATKLRKKHKVILSYEARKLAKHLENGDKINSKHFLCMGENEAKSESLFYKNLE
                     NKDEKVIQISDLENAL"
     gene            34428..36263
                     /gene="speA"
                     /locus_tag="SB143_000037"
     CDS             34428..36263
                     /gene="speA"
                     /locus_tag="SB143_000037"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEF9748616.1"
                     /translation="MMNYGIDIWGNDNFIIKNGKVCINHEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIESIYGSFNKARKEFNYKGKFNAVYPLKVNQYPGFVKNLVRLGK
                     DYNYGLEAGSKAELLLAMAYNNEDAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIVDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLVA
                     PVLELFSQEYTESKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKNNPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEATISVNEKGYEIEGIIEAQSILDALEDLDYD
                     IHTIMDILNERISNSKLVNEKQKKHILGELYLFLNDNGYLKSIGV"
     gene            36264..36896
                     /gene="cysE"
                     /locus_tag="SB143_000038"
     CDS             36264..36896
                     /gene="cysE"
                     /locus_tag="SB143_000038"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEF9748617.1"
                     /translation="MGFFGIIKEDFSQPKVQDPAYNSCVELFFNYPGVWAVVNYRFAH
                     FFYTKNFKRTARIISGISQFLTGVDLHPGATLGRRIFIDHANGVVIGQTAVIEDDVLI
                     YQGVTLGGTSLEKGIKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIVEERRKNKENTRAVDANCEDKLEKLERKIAELEKALSDIK"
     gene            37047..38216
                     /locus_tag="SB143_000039"
     CDS             37047..38216
                     /locus_tag="SB143_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEF9748618.1"
                     /translation="MLTQRSQVLEESITLAITALANELKAKGEDVISFSAGEPDFDTP
                     QTIKNAAIAAIEKGCGKYTAVAGIADVLKAIQNKLKKDNNLSYETSEIITNVGAKHSL
                     FECIECLVEEGDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKINAEQLKKAIT
                     PKTKILMLNSPSNPVGSIYNKEELLSIAKVLEGTKIIVLSDEMYEKLRYDGFEFVAFA
                     SVSEDALNRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDEDIEKMRQAFEKRRDLALNMLHQIPNISVYKPEGAFYLFVNTQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGMDGYFRLSYATSDELIKKGIERIANFIKNYK"
     gene            complement(38326..38667)
                     /locus_tag="SB143_000040"
     CDS             complement(38326..38667)
                     /locus_tag="SB143_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEF9748619.1"
                     /translation="MKITQWNKADFSPKEVKINVLIDDEHSKEIQILLAKDSVMKEHK
                     APFAIRVQVLSGKIWFEVENEKFEFNTLDMISLEANVPHSLGGLEDSVIRLSLNKLDK
                     VQRVNAVLKKP"
     gene            complement(38737..39759)
                     /locus_tag="SB143_000041"
     CDS             complement(38737..39759)
                     /locus_tag="SB143_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEF9748620.1"
                     /translation="MNLSFKTFDLSSKERQKAKKVQGKKYEIFLNENPQTHNAFKVSF
                     REVLRYYYLYPKNTKATFKLPFFKPNLKYVRTPHITWLGHSSLFVSYKNYKILIDPIF
                     NTHASPFSFINKAFKNAPVYNANDFDEIFAVIITHSHFDHLDEKSVKTLKDRAKFFIA
                     PLKVGNYLKSYGVSEKKIIELDWWSGVEFDDLRIVATPAQHSSSRGDGLNKTLWASFV
                     MEFLSADKRVFFSGDGGYFTHFKKIGAYFGGFDLVCLESGQFNAAWPFSHSFPDQILK
                     EAKDLNAKALMPIHWGRFLAGTHAWNGVVEYLYENSNLPLITPKMGEAYEVGSEFEQD
                     FWWKEG"
     gene            39960..40706
                     /locus_tag="SB143_000042"
     CDS             39960..40706
                     /locus_tag="SB143_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated FliL family
                     protein"
                     /protein_id="HEF9748621.1"
                     /translation="MQALKNEIKQKAIFMSLINIKETIKNIQDSADAEVMVIFCEEDM
                     KRLSKSRNIAAHNSQAMDLNIVTNLIRYDLARLKQSIVNFKNNPNNLHFIPKEENVKK
                     KNTKTTRSINYFFICMHFILYYIYYLFLLNKPSKSIRQGNFSYNFHTSYFYSLDPFIL
                     NLPQAGRQKYIHCTIDLELIKEISLEDFTKISPVIRDTIIQTILAKEIQEIEFSNFKL
                     ELQRELVKKINEKLGNKLIKELYFRDFIIS"
     gene            complement(40762..42633)
                     /gene="dnaK"
                     /locus_tag="SB143_000043"
     CDS             complement(40762..42633)
                     /gene="dnaK"
                     /locus_tag="SB143_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEF9748622.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVKDAGLDKNEIKEIVMV
                     GGSTRVPLVQEEVKKAFGKELNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDVRNAADSLAHQVEKSLNELGEKVADSDKENIQKALDDL
                     RETLKNQNASKEEIEAKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            complement(42655..43185)
                     /gene="grpE"
                     /locus_tag="SB143_000044"
     CDS             complement(42655..43185)
                     /gene="grpE"
                     /locus_tag="SB143_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEF9748623.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            complement(43182..43976)
                     /locus_tag="SB143_000045"
     CDS             complement(43182..43976)
                     /locus_tag="SB143_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEF9748624.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNAKFIVLDFKEEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            complement(44277..46367)
                     /gene="cfrA"
                     /locus_tag="SB143_000046"
     CDS             complement(44277..46367)
                     /gene="cfrA"
                     /locus_tag="SB143_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HEF9748625.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSLLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRVSYLANNYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGRTPGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNDGREVVGQAT
                     QPFLGENRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQRYNKDNMIPGIGTCGADRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFDKSFTNGWESYQNSGAPTWVNTYNRI
                     EEGRRIYISINGSF"
     gene            46692..47390
                     /locus_tag="SB143_000047"
     CDS             46692..47390
                     /locus_tag="SB143_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEF9748626.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNETIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQPIMQQQTPQASSYQSVSLTSNSEFLKEIKSAIDEALIY
                     PRQARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYE
                     KTFHIKIPLVYKLS"
     gene            complement(47482..48315)
                     /locus_tag="SB143_000048"
     CDS             complement(47482..48315)
                     /locus_tag="SB143_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEF9748627.1"
                     /translation="MNTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNI
                     SLISSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAEYDLAFKRLQRKQSRRI
                     LKTKKEKTKLSHNFKKTQLKLNKIYEKSSNIKKDSYHKITSKLIQEFDLLAVEDLQIK
                     NMSKRAKLKNIKAKSGLNKSILNISFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSV
                     CGNIKKNLMFKDRVYLCEKCGNTLHRDINAANNILKRGLKSFGLGISLEDYKLKAFRI
                     S"
     gene            complement(48745..48837)
                     /locus_tag="SB143_000049"
     CDS             complement(48745..48837)
                     /locus_tag="SB143_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748628.1"
                     /translation="MLETLKKYAENQGIEDNYPKKIYNQKEKKP"
BASE COUNT        17168 a         8235 c         7230 g        16420 t
ORIGIN      
        1 gccttggctg ctttgctttc tttgggattt aaacaagata aaatattaag cgttttaagt
       61 acttgcaacg gaaaagatac aagcgaactt atcaaagaag cactaaaaaa actagcataa
      121 ggaaaaataa tgaaattagc gatacttttt ggcggaaatt cttacgaaca tgaaatcagc
      181 attgtaagtg ctgtggtatt aaaaaaagtg ataaatacgg atttgacatt tattttttgc
      241 gatgaaaaaa ggagatttta tttaattcct agcgaaaaaa tgaattctaa aacctttagc
      301 ggtggtgctt accaaaaaga aaaggagtta tttttaagac aaaaggcttt ttatcataaa
      361 agtctatgga gtgaaaaaaa cttagattta gattgtgtga tcaacctcat ccacggaaga
      421 gatggagaag acggaaagat agcttctttg cttgaatttt ttgatatcaa attcataggt
      481 cctagggttg aagcaagtgt tttatctttc aataaagagt tcacaaaact ttacgcacaa
      541 agcgttgggg ttaaaactct agattatcaa atgcttagaa aaagtcaaaa gcaagatttt
      601 acagctcatt ttccttgcat tttaaagcct gcacgacttg ggagcagtat agggatcagc
      661 atagctaaaa atgaaaagga attggattat gctaaggatg tgggttttga gtttgatact
      721 gatattttgg tagaggattt taaaagtaac atcaaagagt acaatcttgc aggatgtatg
      781 atcaaagatg aatttatctt ttcaatcatt gaagaaccaa agaaaaaaga atttttggat
      841 tttgagcaaa aatatcttag tttttcaggc cataacgaac ttatcgaagc tgatttgagc
      901 gaagaattaa agcaaaagct taaagataat tttgccaaaa tttataatcc tttatttaaa
      961 ggtgctttaa tccgttgtga ttttttcatc ctagataatg aagtttatct gaatgaaatc
     1021 aatccaaatc caggctcttt agcaaattat cttttcaaag attttaacaa aattatagag
     1081 caacttgctc taagtataga aagcgaaaag aagattaaaa tcacttatga atttttacat
     1141 tctattaatg gacaaaaagg caaattataa agctttaaga gaaagtatgt taaattttac
     1201 ataaaatttt atgtatttta ggaaaattta tgctttcttt taaacaagat gaaatctata
     1261 ccgccacaga agttgtgcga aactttagcc ctttgatcga aaaactaaaa aaaagcgaat
     1321 cgggcaaaat ggtcatctta aaaaataata aatttgaggc cgttttgctc agtatgaaag
     1381 aatttgaacg cttgcaaaat gctatgcaac tcttagaaaa tatttacaaa aaccaaaagg
     1441 tttaagatgg cgcttgtaaa tgtgatttat aataatgata cttatgaatt aagttatgaa
     1501 attttaaatc aagataagaa aaaatcttta ctcatattgc atggatgggg tgcaaataag
     1561 gagcttatga agcaagcttt ttctaaaaat ttaaatgatt tttgtcaaat ttatctagat
     1621 ttacctggtt ttggaaattc aagtgcgcca aaaagtcttt atagtcaaga ttatgtaaat
     1681 atcataaaag aatttttaaa agaaaaaaaa cttgatattg atatttttct aggacattct
     1741 tttggtggaa aaatagctgc tttacttgtt ttggattttc aaaaagctca acttgttttg
     1801 ctttcaaatt caggcatact tgcaaaaaaa tcttttaaag tgcgttttaa aatcatgctg
     1861 tttaaatttc taaaaaaatt gggtttgggt agattttatc gttattttgc aagcaaagat
     1921 ggagcaaatt taaacccttt gatgtatcaa acttttaaaa atgtagtaga tgaagatctg
     1981 agtcaaactt ttgctaaaat cgacaataaa agccttattt tttgggggat tgatgataaa
     2041 gccacccctt taaaaagcgg agaagcaatg cacaagctta tcaaaaatag cgaattttat
     2101 cctttagaag gggatcattt tttcttttta aaacattctt tatttatagc caataaaatc
     2161 aaggaaaacc aatgctaacc aatacacttt attttatcaa ttctttgttt tttaattttt
     2221 gtgtagcttt ttatcttatg agcgctttac aatggtattc ttataaattt aaacgcgtat
     2281 tttttcacta tcatagacct ttgtggcatt tgtatttttt atttttacct tattttttct
     2341 ttttgacttt tcctttatat tctttggcgt attttgcact tattcatact ccgattttat
     2401 atttttggaa taaaagcata gataaaaaac tcgtctttac aagcaaggtt aaatggtttt
     2461 ttgtttttgt atttatctat aatacccttt ttgccatact tgctttgcgt ttttcttttc
     2521 ttttcaatct ttttgccctg ccttttgctc ttataagtct taaaatcttt gagctattta
     2581 gcaatttata ttttaaaaat aaagccaaag caaaacttca aaacaatcca caattaaaaa
     2641 tcatactcat tactgcaagt tttggaaaaa caagtattaa aaatttcctc tatgagcttt
     2701 taaaagatga ttttaagacc tacaaaaccc ctcgctctgt aaatacccta cttggcatta
     2761 tcgcagatat caatacaaat ttaagcgatg atacacaaat ttacatagca gaagcaggag
     2821 caagagtaaa aggcgatatt gatgttataa cgcgtttttt agagcctcaa atttgcattg
     2881 taggagagat aggaaatgcg catttagagt attttaaaaa tatagaaaat acgcgaaaaa
     2941 ccaaactcga agctttaaat tccaaaagat tagaaaaagc ttttttacat actagcaccc
     3001 aaaaaagcga agatgagctt atcttgcttt acgatgataa attacaagac attcaagcaa
     3061 gtcttcaagg tttggaattt aagatcaatt tagaaaataa aacatatgaa tttaaaagcc
     3121 aaattctagg agattttaat gctcaaaatc tttgcgcttg tatactttgt gcaaattatc
     3181 taggcgtaaa aataggaaaa attcaaaagc aagttttaaa aatcaattca gtagaacatc
     3241 gcttacaaat catctctaaa gagcctaaat tcatcatcga tgatggtttt aatgggaatt
     3301 ataaaggtat gagtgcaagc tataagcttt gcaaaaacta taaagggcgc aaggttttag
     3361 ttagccctgg tatagtagaa gtagataagg atgaaaatgt aaaattagcc aaaatcatca
     3421 ataaatgctt tgatcttgcc atcatcacag cacaggttaa tgctgatatc tttaaaaaag
     3481 aacttaaaat aaaaaccatc atactcaaag aaaaagcaga tcttgttaag gttttagcaa
     3541 aagaaaccca acaaggcgat ttgatacttt tttctaatga tgcacctagt tttatgtaag
     3601 tttatcttgt gaataatttt aaagataaag atatttaaga aagatttcta attcttatct
     3661 taaatcatct tctattttat tgttagaatt ttatgataaa atcaatgcca cttttataaa
     3721 gttttcataa atttaggagt aaattatatg caaaaaaatt cttttttaaa aatctatggg
     3781 ctcataccct ttttgcttgt agctttcatc aatgcttttg tagatttagg gcataaaatc
     3841 atcattcaaa atactattta taaggtttat gaaggtagca cacagcttct tttaacagcc
     3901 attgttaatg ctcttatcct tctacctttt attttaatgc tttcaccctc aggattttta
     3961 gcagacaaat atccaaaaaa tcttatcatg aaactctcag cagtttttag cgttatactt
     4021 acgattatca tttgtataag ctattataat ggggcttttt ggacagcttt tacacttact
     4081 ttcatcatgg gaattcaagc tgcactttat tctcctagca aatacggctt tattaaagaa
     4141 ttagtcggaa aagatttact tgcgatggga aatggtgcag ttaatgcagt aagcatcgtg
     4201 gctatactag ctggaatgag tcttttttct ttaagttttg aaagcttata tgatataaat
     4261 cataacagct cagaagaggt tttaaagcaa gttgcacctt tgggattttt acttatactt
     4321 ttttcactca tagagcttta cttagcgtgg cgtttaccta aacttaaaga tgagataaaa
     4381 gaattaaaat ttgattctaa acgctatttg agcggaaaat tgttgatgag caatttaaaa
     4441 cttatttttg gaaataaagt aatttggctt tgtatcgttg gaatttcgat attttgggcg
     4501 atatcgcaat tatatcttgt aagttttccc gtatttagta aaaatgaact ttttattgaa
     4561 aatacttttt ttgtacaagt ttctttagga ttttcaggga ttggagtcgt tttaggctct
     4621 ttaatagcgg gtaggttttc taaaaattat atcgagcttg gactcattcc ttttggggct
     4681 ttgggcgtgt ttttaatggc cttgattatg ccctatttta caagtttgat tacatatagt
     4741 tttatctttt ttatctttgg tttttgcggt gcgttattta tcataccttt aaattctctt
     4801 atacaatttc atgcaaaaga aaatgaactg ggtaaaattt tagcaggcaa taacttcata
     4861 caaaatatcg ccatgcttac ttttcttgtt ttggcaactt tatttgccaa tttagaaatc
     4921 aatgtaattt atttatttta cttcattaca cttgttgctt ttttgggtgc gatttatgta
     4981 gtctttaaac tccctttttc tttagtaaga atgcttttaa gcatagcatt tttaggacgc
     5041 tatcgtttgc ttgtggaagg ctttaaaaat atccctgaaa aaggcggtgc cttgcttttg
     5101 ggcaatcata tttcttttat cgattgggct atagtgcaaa tggcaattcc tagaaaaatt
     5161 tattttgtca tggagcgaag tatttattct aaatggtata tcaaaatttt tcttgataaa
     5221 tttggtgtca ttcctgtttc aagtgcagca agcaaggcta gcttagagct tattgcagag
     5281 cgtattaaac aaggggattt ggtttgtctt tttcctgaag gcgtgctttc aagacatggg
     5341 caactcaatg aatttaaagg tggatttgaa catgtttgct caaatttaga agaagatgat
     5401 ggggtgattt taccttttta tatacgcgga ctttggggta gcactttttc aagaagtgat
     5461 gaggagtttt cagctagaaa tcgcacctta agcaaaagaa atatcgctat agcctttggt
     5521 gctcctatgt ctttacattc taaaaaagaa gaggtaaaag ctaaagtttt tgaactttct
     5581 tttacggctt ggaaatctca atgcgaagca atgcatacca tagcaagagc ttttatcacc
     5641 agcgctaaaa gaaatcttag taatatagct ataatcgact ctttagcagg agcgattagc
     5701 tatagaaaat tattgagtct tagttttatt ttaagcaccc ttataaaaga aaattcaaaa
     5761 aaaatcaata gcaattttga acgcggatct tatgcgccca aagaagaatg tgtaggaatt
     5821 ttacttcctg cttcttttgc tagttctttg ctaaatttaa gtgtcttgct tgcacaaaaa
     5881 attgtagtaa atttaaattt tactgcggga gaaaaagcct tacaagcagc agtaaaaagt
     5941 gctcaaattt cacaaattta tacttctaag aaattcttag aaaaattaga aagcaaaggc
     6001 gtgtctttaa attttggtga agaagtaaat cttatctaca tggaagatgt ggttgaaatc
     6061 tttaaaaaac aaaaaagtaa aattttagca atgatgatgg cagttagtat tttacctagc
     6121 tttatattaa aagcgatctt tgctccttct aaaaacaatc ttgccatagc agctattctt
     6181 tttagcagtg gtagcgaagg cactccaaaa ggcgtaatgt taaataaccg aaatatccta
     6241 agcaatatcg ctcaaatttc agatgtgctt tgcacaagaa acaatgatgt aatactttca
     6301 tccttgccac cttttcatgc ttttgggcta actgttacta catttttacc tttacttgaa
     6361 agtattaaaa gcattacttt tgctgatcca accgatgctt taggcatagc aaaagctgta
     6421 gccaaaaaca atgttacgat aatgtgtgga acctcgacct tcttaggaat ttacgctaga
     6481 aataaaaagc ttgatgccat tatgtttgaa agcttaagag tggttgtttc aggagctgaa
     6541 aagcttaaaa gcgaagttcg atctgccttt gaaatgaaat ttaaaaagag tatttttgag
     6601 ggctatggag cgactgaaac cactcctgtt gcaagcgtga atttgcctaa tcgctttgat
     6661 gcggattatt ggatagttca ccgcgcaagc aaagaaggaa gtgtgggcat gcctctacct
     6721 ggaactgcag ttcgcattgt cgatcctaat acttacgaaa ctctaaaaac aaatgaagat
     6781 gggctgatac tcataggcgg acaccaagtc atggtaggat atcttaacaa caaagaaaaa
     6841 accgatgaag tcatcaaaga aatcgatggc ataagatggt ataacaccgg cgataaaggg
     6901 catttagatg aagatggatt tttgtatatc gtagatcgtt attcgcgttt tgcgaaaatc
     6961 ggtggagaga tgatatcttt aggtgctcta gaagaagaaa tcgctaaatt catcgataca
     7021 aatatagtga aattttgcac cgtagcttta gaagatgaga aaaaaggcga acaagttgcc
     7081 ttgcttatag aatgtgatga agaattcttt gaaggtgttt gcgaagctat aaaaagctca
     7141 agtatgcctg ctattttcaa gccaagtcgc tatctaaaag tagaaaaaat tccactttta
     7201 ggctctggaa aagtggactt aaaaggcgct aaggaattag caaaaagctt ggtttaaaat
     7261 aataaatttt tagcaaagag ataaatactc tttgcttttt taattttttc ttataattct
     7321 ttcatatatt taaatttacg ccaaagccca aactaaaatt ggcatagaaa taaaagcaaa
     7381 aagcactcca aaagccacag tacttacagc tagattgcta tctaatttag ccttcattac
     7441 catagctcct gctaaagtca ttgtaggcgt ggcactttct atgatggcaa ctatgattga
     7501 agctttcatt tcaaaaccaa aaagctttaa taaaagcaca aaaattaaag gtgctaaaac
     7561 cattttagct aaaatcacaa gaatagtagg tttataagca gttttaatcg ccataaaacc
     7621 aagccccaaa cctatggcaa aaagtgccac tggagtagct gcaccaccaa ataaacgaat
     7681 aggggaaaaa ataaattcag gcaaggatat taatttacac aaaaaaccca aaagcaaagc
     7741 caaaaaaggt ggaaaagaaa gaattttttt aatatttgct accaaactta ctttttcacc
     7801 acttcccaaa gaaaggataa aaggccccaa aagagaaata ggcaaagtag tagctaaagc
     7861 atcatatagt attacttctg cgccaaattg cgcattagca aaaatgcctt caacgatagg
     7921 catacccaca aaaatagtat ttccaaagca agagagtaaa aacatactca ctagtgttgc
     7981 ttttgaaaaa ttaaaaataa aacctaaaaa tacgactata aaagcagcaa gagcacaact
     8041 aaaaaatcct ataaatatca aaacaaccaa agagaaatca aaatttaaat gataagcttt
     8101 atcgaaaatt aaacaaggca aagcaaaaac gatagcaaaa tctaaaaagg ttcttgcttg
     8161 tttttgtttt aagataccca ctcttttagc aaaataccca cctgctagta agataaaaat
     8221 cgtaaacaaa ggactaaaaa taaacatacc atatcctctt cttgtttcat tacttataaa
     8281 gataatttta aaaatggaaa aaattatatt ctttataatt aaaagagaac ttaaaatgtt
     8341 ttaagtttta tatttttata taaaaatata aaacttactt gcttaaaaat actcaatctt
     8401 ttatcaaaat actatggttt tatttttatg tataaaaatt ctatcatcaa aaaccaaatc
     8461 aagagctttt gaaagcacat ttttttcaac attgcgtcca gcttgctgca tatcttgcca
     8521 agtgtattca tgacttacag gcaaaactgc ttgagtgata atcggccctt catcaagatt
     8581 attattaaca aaatgtgccg tagctccaat aatcttcacc ccacgctcaa aagcttgttt
     8641 atagggattt gctcccacaa atgcaggcaa gaaagaatga tggatattaa ctatctttcc
     8701 ttcaaaatgt ttgacaaaat caggggataa aattctcata tattttgcca aaaccaaata
     8761 atcaaattga tattctttta aacattctaa aacttgtttt tcctgctctt cgcgctttaa
     8821 attttctgca ctgatgcaat gataagggat ttcaaatttt tctactaagt ttttaagagt
     8881 gtcgtgatta gaaatcacgg ctttgatatt agcctcaagc tcattgctat aatacttgat
     8941 caataaatct cccaaacaat ggctttcttt agtagcaaaa acaataatat ctttctttct
     9001 tttttcacaa agctctatat aagcttcttc tcccaacatc gcctcaagtg tcccaataaa
     9061 ggctttttta tcaaattcac cctctaaaat agcgcggaaa aaaaacattt cttcgcccac
     9121 aaattcatca ttttttacta tattgatatg atatttaaaa atcacatcag aaatacgata
     9181 aatcaaacct ttttgatcct tggtgcaaat ttttaataca gaaatcattt aatttaacct
     9241 tttaatatat tcatataatt cattttctct tgcttcttta agctttaaac ccaacatttt
     9301 accataaatt ccagcatcaa gaaaatcttt tgctaaaata cttgttttaa atttgttctc
     9361 ataaagtttg aattttttag cccactttat gcgctcttta tcccaaagcc caagccattc
     9421 ttttaaaggc atatccaaag caatacttgc taaatcaaaa tcactcattt catcaagata
     9481 aaaagcttga tttgcctttt tgaaatactc tttttttatt ttgctttttt taaaaaattc
     9541 ctctttgttt aaattaaaaa aatttaaata caaatacaaa aacaaagcat cgtctttaac
     9601 tacttctcta ctttttctaa gcaaagcttg aaattccata cttttaaaag cactatcaaa
     9661 gccaaaaatt tctttttcca tattaagctc ttgtaaatat ttatagccca cttcaagctt
     9721 agagctttta aaaaatttat aaagctcagc attgatccta tctctgctaa gatcttttat
     9781 attcatgctt tgcattaatt ttaagctttc atctgctatt ttaaaatcaa atcttgaagc
     9841 aaaagccact gctcttaaaa ttcttaaact atcttcttga aaacttgttt gatcaatatg
     9901 ccttaaaatg ccctgctcta gatcttttaa tcctccataa aagtctaaaa actcatcatt
     9961 aaaaagattg atcatcatag aatttatagt aaaatcgcgt cttttggcgc ctaatttttc
    10021 atcattacaa atttgcacct caaaacccgt atgcccataa cctgtcttat tttcagttct
    10081 agcaagagca aaatcataat ttttaaattt atatacaaaa aaactttttc caaagccttg
    10141 cgcgcctagt tttttcatca ttttttcaaa atcactaggc gttatatcgt aaagctctat
    10201 atcataatca taaatttcta aacctaaaaa taaatccctt acactcccac caaccaaata
    10261 agccctttga gtatagggac ttagaaaatc aatgacaaat tttaaatctg cattattttt
    10321 taagcttatc ttcgatgttt gcaagcaaaa actctaaaaa attaatagtt aattgaagtc
    10381 tgtgttccaa attctcctcc ttaacactat ttaaaccctc aaaaagaacc aaaattcttt
    10441 ctctaaggtg ttttaaaaat atatcttcat taagagtttg cacctctgct ataatactag
    10501 ggtttaaaat ttcactttgc aaaacagcct cttctttaac tggctcttta ttttcttgat
    10561 ttaattcatc taaatttttt atctcttctt gaattttttg ctcttcttca aatttcgcca
    10621 tagaaatttt atcttctaat tcttgctcca aaataggctc ttccttaagt ttaaccgtag
    10681 gcatatcctc ttgaatttga gtctttctaa gctcttcttg ttcttttaga atttcacttt
    10741 gccttctttg ttcttccatg atagagctaa cttcactgat agttttcttt gccaaatctt
    10801 ctaaattcat atttttatca accacctttt aaattcattg atctcttcat cgcttttcat
    10861 atttataaaa aaatcaagca tttgagtatt taaatcctga tgcttagaac gaaacccact
    10921 aagacgacgc actgcatcaa ttgcattttg gttattagga tcttctttta aaatattttt
    10981 ataaatctct aaagcttcat ccttaagccc ttgggcttca taaatggaag cttctgtaac
    11041 tgtgtttttc attatctttc ctaatatttt ttttaatttt agcaaaaagc attttaagtt
    11101 aaactttata taatacgcta agagccattg caaagataaa caaagcgctg attttattga
    11161 ttttatctaa atgcttattc ataaagatct taaatatact tccacctaaa gcataaagac
    11221 ttaaagagca aaattctatc aacaaaataa tcaaaagcaa aatatttaca ttcacttgaa
    11281 attttaaaaa agaaggcaag atggaaaaca taaaaatcca tgcttttgga ttagaagatg
    11341 aagctataaa gccttggatg ataagagaaa attttttctt atggatgatt ttttcttgag
    11401 taatttgact ttttgattta aacaatataa aagcaatata taaaagatat aaagcacccg
    11461 ctatttgaaa aaatttaaat aaattttcat atcgcaaaat aaactctatc cccaaagcac
    11521 aacacaaaac cactaatgct aatcccacaa gctcgccaaa tatcatccat aaagtatttt
    11581 tatatcctaa agaaagtccc aaggaaaaag ctaggctcat acacaatcct ggcagtaaag
    11641 aaaccgaaac aaaagtcaag ataaataaag tatagtccat taaaacaatc ttaacacaaa
    11701 catataaaaa atagttccta aaataatgct aagaagtgca tttttaaaaa gcagatgtat
    11761 caaaaatacc aaaatacaag agacaataaa atcaagccca taaggataag aataaaaatc
    11821 cacctcataa aaagtataaa aaaataaaat gatgatgata actaaaggca tattatactg
    11881 cacaaaaagc aagtgatagt tttctttttt atttttaaac aaaataaaag ctaaaacacg
    11941 agttaaataa gtcgctaaag aagctgctaa aatcgcatat aaaatatttt tatctaacat
    12001 atttttttcc aaaaatcaaa atcatcagag cgataaaaat acaaaaagct aacatataag
    12061 gcttgtctat gcaaaataaa gcaaaaagtg ccacaaaaga agaataaagt aaaattttta
    12121 aattaggatt ttgtttataa agctcataag ctagcacaat aaaaagggca ttaagactaa
    12181 attctacacc cgaataatca atatttaaac cctgcttaaa ataataaccc aaaacagaac
    12241 ctattaccca ataaatttga ttcaataaac aaacttcaaa cataataagc gatctttgcg
    12301 cacgactaag atttttgatt ttctctttaa tagagcttaa aagagcaaaa ctttcatctg
    12361 ttaaagcaaa gataatatag tgccttagaa aattaatgga ttttagctct tttaaaagtg
    12421 ataaagtata gaaaaaatgg cgaaaattca ataaaaacaa agtaaaaaaa atcatcaaaa
    12481 aagatacatt ttgcgccact aaagctacta aaagaaattg cccagcacct gcataaataa
    12541 aaattgaact aagcaaaatt tcaaacaaag aaaaatcttt actagcagct aaaattccaa
    12601 aagcagcccc taaagggata taacccatta aaacagggat agtaagaaga aagagttctc
    12661 tttgcttcat tttttctctt tgaataaatg ttttagatat tcttctcttt gtttatctaa
    12721 atttggatcg cttttatgaa tttgtcgctc ttcttttact ttgacatttt catcattaaa
    12781 atacaaataa tcaataccaa aaataatagc tataataata agcaaaggaa ttaaaaaaac
    12841 catctaaaag ctttaatcaa gacatttgat tgtaaatact accataataa cgaatatttt
    12901 cagcattttc atttttttct atagtttgta tcgctccgct atttatagct ttttggatat
    12961 ctttatccaa atcttgataa gaaaaaacca tatttatact gataatatga ggtaattttt
    13021 caagcatttt gtaagactca agctcttttt ctaaactttc actttctatc acaacgatga
    13081 ttttttcatt ctcacaaagc tctattgaac atgaaggaat ttttaagatt tcttttttta
    13141 attcatctat atgttgtact ttagctacga tcaaaacgct agaaagattc atctaaactc
    13201 ctaaatacaa ttttatctcc aaagcctgag ataatcaatt ctctttcgtt gataaaaatg
    13261 ataatttcac tcattaaatt ttcatccttg aaaattctaa cagtttttag ggtatttgta
    13321 tcaaaaacct cattaaaacc ctcttcatta tcactatacg cagccaattt cccactagga
    13381 cttaaagcgc aagtatagat taaaaaatct ttttgcaaaa aagtttgctc ttcatttttt
    13441 accaaaccta tacgcctatc tgtgccgcaa cttataagag tatcattttt aaaatcaact
    13501 tgatagatat tatctttgtg cattttatca tagtttttta atattttcca acttttcaaa
    13561 tcaaaaagtt ccacctcccc actttcaaat cctgctataa acttggtttt ttcttcattt
    13621 aaagctgcat catttaaact agaatgagag aatttaaact catttatacg ctttaaatcc
    13681 ttatcaacaa gctctatttt agaacccaat aaaaccaaaa gataggtatt ttcatctata
    13741 aaaaaagcct ctttaacact gctttcttga agtgtttgaa tttgaagatt gttattataa
    13801 aggcttaaat tttttgctcc aaaatcgcct tcactaagta tcaaaagaga attttgataa
    13861 acatcgatat tataaattct agcaaaatca ccctcataat aatttttaat tttaggcaaa
    13921 gataaaagtt cttttaagct tttatctttt agattatact cataaatctc acccttatca
    13981 gtgcctatat acagctcctg ctgatcaagc tttaaagctg taatatttga attaagcttt
    14041 agctcataag caggagataa aatatataaa aagcttaaaa tgaaaagaat ttttttcatt
    14101 attttactca acaccttcat taattacatc gattaaatta gaacgatttt tcaagccttc
    14161 atttttaaat tcagccttaa aactatttcc aactaaaggt tttgcatcac tttgtggaac
    14221 atgacattgg gtacaattaa agcgcgaatc actgatcgca tctcctgtgg ttttattagt
    14281 tctaaaatca taataatgac tcgcaggaag aggagttgcg ccaacatcgg ttgcaattgc
    14341 tttatcatgg caactaaggc aggtgttatt atccttagta ataggcaaca tatcctcaat
    14401 agtatgcgaa ataagcggtg gtgcattttc aaaagaacgc tcaaaaagca cagattcacc
    14461 tggctgtaaa gcagtaaaac tagcatcgac caaagctacc ttattttcat tttccaaact
    14521 tgctttccta agtccaattt gctctgaact caccccacta tttaacgcac aagcggctaa
    14581 aaacattata gcaacgcttc ctagtaaaat cgttttcttt ttcattattt tttccttaaa
    14641 tcaaatatat taaaatttaa agcatcatcg ttacacactt ctacacagcg tccacatctt
    14701 atacattccc ccgaatttac actcgcgctt tctttagcta tcatccaaag aacttgtttt
    14761 tcaggacaaa ttccaataca tttataacac ttagtgcatt tttgatgatt gtgcttgatt
    14821 tttaaaagcg caaaacgaga gatgagagca taaaaagccc ctaaaggaca caaatgcgaa
    14881 catatcgctc taggactcaa aaaagcatct atacaaaaaa gtataaaagc tataaatatc
    14941 caagaagtgg tgccaaaaat aatccctcta tgtataatgc ctatataaga catactttca
    15001 aatacaggca aagacaatac aaaagaaaga attaaactca aagctaaaat ataatatctt
    15061 aaatttttac ttaagattaa aaccttactc tgtttaaaag ccattttaga gcgaacaaag
    15121 gcagcaaaat cagtaatcaa atttacaggg catacccaag cacaaaaagc acgacctaag
    15181 aaaactccat aaagaattaa aacgatcaaa gctcccataa gtgccattaa atctatgcta
    15241 aaacttgcta aataaatttg aatcactgca aaaggatcac ttaaaggcag ggtatcaaaa
    15301 agcctagaag aacttaaatt tccttttaag ataaaatccg tagccttaaa actaaaaaga
    15361 gctaaaattc cgatttgaac gatgcgtcta gcgattaaat acctcatcaa aattctccct
    15421 catttaaata atttgttgcc tttttagcat caaaatattt agaagtatct gcatctttta
    15481 tacgatcttc atcctcttga tcccagccct ttacataatg cgaaccagcc ttacctaaaa
    15541 catactcgcg tggtaaaaca cgaatagcag gcttttccgt aatacacgca agctcgcaaa
    15601 gcccacagcc tacgcatact tcatgatcaa cactaggcaa taaaaaggcg tgcttagcag
    15661 tgcgctcatt gcgtttaagt tcaagtttta aagccctatc tatcaaagga caagctctat
    15721 aacaagcatc acactgaatt ccccaatgcg ctacacaaga agcactatct acgatcgcaa
    15781 tacccatttt taaagattct atgccctgct ctaaatgttt tttatccaaa gcatcggttg
    15841 gacattcctt aatacatggt atgtccttgc aaagataaca aggaatttct ctagccttaa
    15901 aaaaaggagt tccgtttttt gcactatcta acaaagtagc aagttttaaa gtattgtatg
    15961 gacaggcttt tacacacaaa ccacaacgaa tacatttgct taaaaatctc gcctcatctt
    16021 cagctcctgg tggcctcaag gcgtaatcat cgtcagcctt taagcttaaa tttgccaaaa
    16081 atccacccgc agtacaaaga cacaaacctt taaaagcact agcaaaaaat tctcttctat
    16141 ctttcatcaa atcaaacctt tatcttaagc tttatagatt tttaccgcac attttttaaa
    16201 gtcagtttgc ttagaaagtg ggcaagttgc atctagagta actttattga tatatacatt
    16261 ctcatcaaac caaggcacat aaacaagtcc tacaggtggt ttgtttctgc cacgcatatc
    16321 tactcttgct tttactttac cacgacgcga ttctacccaa actaaatctc cttgatttaa
    16381 acctaatttt tcaccatctt tttcactcat ataacaaagt gcctctggaa cagcacggta
    16441 aagctctggc acacgcatag tcatagtccc actatgccaa tgctctaaaa cccttccagt
    16501 tgaaagccag aatggatact cttcatttgg tctttcaggt gctttcataa atggtctaaa
    16561 gaaaatttta gctttatttt taatactatg ttctttttca tccttaggag ctatcaaatc
    16621 cccattggta agcattttat taaattcacc atagaaagca aaatctgaat ttggagcagc
    16681 ttttttggca taataatcaa atttagtatt aaatctccat tgtgtttctt taccatttac
    16741 cactggccat cttagacctc ttacttgatg ataagtgtta aaatcagcca aatcatgacc
    16801 atggcctaaa ccaaatttac gatactcttc ccaaagatat ttttgaacaa aaaagccata
    16861 tcctttaaat tcttttccat cactgccttg aatttttctt tcatcaccct taacttcact
    16921 attgtcataa tctttcataa cagcatcatt tgaagtaaag ttttttgctt ctttattggc
    16981 aaataaaaca tcaaaaagcg tatcatcttc gctataaccc atagcttttg cttcttctag
    17041 tacacttggt aaagtaagct taccatctac tttttgttct ttccaaacct ctttaagctt
    17101 aaagcgtttt gcaaattcta aaatttgcca agtatcactc atagcagcac ctacaggtaa
    17161 aacttgttgt ttccagtgtt gagttcttct ttcagcatta ccataagcac cccatttttc
    17221 ataaatcatc gcacttggca agataagatc ggctactttt gctgaaattc caggataaca
    17281 atcactcaca acgataaaat tatccatatc tctagctgct gtgatccagt gatttgcatt
    17341 tgcggtattt tgccatggat tatttacttg aacccaagca aatttaattt taccatcctc
    17401 taaatccctc ataataccaa gataaggcga acctggtttt ggattgattg tttttgcagg
    17461 cactttccaa attttttctg aaatttctct gtgttttgga tttgccacga ccatatctgc
    17521 aggcaagcgg tgagagaatg ttcctacctc tctagcagtt ccacaagcac ttggttgtcc
    17581 tgttaaagag aaagccccac tacctggctt agcttgtttg ccaagtaaaa aatgcaccat
    17641 ataagcttgt tcatttaccc aagagcctct tgtgtgttgg ttaaagccca tagtccaaaa
    17701 gctcactact ttacgatttt tttctatata taaattagcc aattcttgga gttttttctt
    17761 aaaatcttct aaagattcat tatcatcacc cttggctact tttgcggtat attctaaagt
    17821 ataaggtgct aaaccttttt tgaattcttc aaaagaaatt tcccaattct tatcagctac
    17881 gccttgatgt ttcatttcaa atttatcacc tgctttcaca ccaagataag aaagagaggt
    17941 tgcttcttct tcatctaaag tgattgcatt ttcttttgca acggtatctt tttcgctttc
    18001 tttaaattta ggatggtttg gattatttct catgccataa ccaatatctg cataacctgt
    18061 tgcaaataca caatgatctt taatgaattt tttatccata gcttcaggat gattataaac
    18121 aatctctctt gctatatagt tccaaatagc taaatctgta ttaggtttaa aaatgatttc
    18181 aatatcagca atatttgaag tacgattaga aaaagtgctt aaattcacaa ttttaacttt
    18241 atcaagattg cttagctttc tatcgctaac tcttgaccaa agtatagggt gcatttcagc
    18301 catattagct ccccaagtga tgatagtatc ggtaagttct atatcatcat aacagcctga
    18361 tggctcatct acaccaaaag tttgcataaa accaaccact gcagaggcca tacaatgtct
    18421 tgcatttgga tcgatattat ttgttctaaa acccgctttt gcaagtttta aagcagcata
    18481 accttcttgg atagtgtatt gcccactacc aaaaatccct atacctgtaa cgccgagttc
    18541 attgtaggct tttttaaatt gtttttccat ttcatcaaag gctctttgcc aggaaacttg
    18601 cttgaatttt ccttttttgt caaattctcc cttatcattc atacgaagca aaggcataac
    18661 aagacgatct tctccataca tgattttagc gttaaaatat cctttaatac aattaagacc
    18721 acgatttaca ggagcagcag gatcaccttt gattgctaca attttgccat cttttctagc
    18781 tatcataatt ccacagcccg ttccgcaaaa tctacaaacg gctttatccc atttccattc
    18841 ttcctcttgt gcgccaaata ctgggcttgg ggcactaaga cctgcaacac tagcagcact
    18901 cgcaatagcg gtatttttaa taaaatccct tctattcata ctctaatcct ccaaaataat
    18961 aaaaatcatt ttattataaa aaatagaaaa taaaattatc ttgaattttt tgcaaaaaat
    19021 aataatttca aagccctatt ttataggact tttattgtcc tttttatatt attattacac
    19081 aaaataaata ttaaaaataa tcaacttaac aattaaaata taatcaactt aaaataataa
    19141 aaaaatgaag atataaaaat taagccctaa gaatgggctt aatcaaaatt aatggcaacc
    19201 acaaccaccg cagcagctag aaccaccaaa aaatgcatca agttttgcaa tatctggcat
    19261 ttctgtgatt tcatttacaa gttctttata tgccacttta ccctctttaa tcacaaatac
    19321 ggcacgagct aaaagccctt ctaaagcacc ttcatttatc aaaacaccat atttttcacc
    19381 aaattctttt gccacaaaat cacttgcaac acttagattt tctatacctt cagtactgca
    19441 aaatctaccc atagcaaaag gtaaatccat acttacaact acaacttcag ctccattgta
    19501 gcttgctact tttttgttaa attctcttgc ttcagttgcg caaactggag tatctaagct
    19561 tggaagactt aaaacaattt gtgttttacc tgcagcacca atttcaatcg tgcttaaatc
    19621 tttagcctta agtcctactt taggagcatc tgctccaact tctactgaat ttcctttaag
    19681 ttttactggg tttcctttaa aatttactga actcattttg tcatccttta tttttataaa
    19741 ttgaaacatt tttgtaattt taatgtttcg aaaattatta tatcttaata attattatta
    19801 attctttaaa tactcagctt aaaatcactc aacttcattc caagcatgtt ttttccaaat
    19861 tttttgggct tctttacttt gaataaattt cacaaattct aaagcttgtt tattttgaag
    19921 tccttttttg gtaggaatga tttcagctgt gcgataaact gctgcttttt catcttcgat
    19981 aaacaaagcc ttatctccta aaaccttagc ccaatgcgac caaataatta aagcgtctat
    20041 gtttggattg ttgttccact catctatagc tattttagaa tttttagcat aaactttaat
    20101 atttttacgc aacttgacca aattttctct tttaccatct tttaaagcca tatcctcata
    20161 aagtccaact tgacctgcac catcaacaac cataacattt acattatctt ttaaaatatc
    20221 ctcaaaactt ttgatatttt ttgggttatt aggacgcacg atgatacctg aaggacgggc
    20281 atttaaaaca accaaatctt ctaaattcaa gctaggaatt cttttgataa atccatccat
    20341 catagaagta ttacccgaaa aaatcaaatc cgcatctttt ctagcctttt taaaccacga
    20401 tgaggtagga cctgcagtca ctacaacttt ttctttagtt ttttcttcaa atttcaatgc
    20461 tagttctttc ataaccggcg caggaccgcc aggaccataa actaaaactt cagcatttaa
    20521 aaaacttgct gcgactaaac ttaaaaataa atattttttc atattttaaa cctttctttc
    20581 aatgatattt attttgaaag aaaatgttat caatctatgg ttaactctcc cttgcaaagc
    20641 cctgcttcta taagaaaacg cgaaggtgta aaagcagttt ttttattttt gtcgtatttt
    20701 gcatagctaa gataaagtat atttttagct cttgttaccg caacataaaa cagccttctt
    20761 tcttcttcca agcttccgcc catgctcata agtttttgat taggaaaacg cccttgtgca
    20821 agatcgatca caaataccaa atcaaattcc aaacccttac ttgcatgtac gctaagcaaa
    20881 tttacaccct tgccattact catctcgctt gcacctaggg ttaaaaaatt ataatactta
    20941 taaatatcgc tataattttt agtgagttct tttaaaacat taaatttcgt ttctatcttt
    21001 tctaaatttt ctttttttct taaaagatcc acttgccctg ctttatttgt cgctcttttg
    21061 atggctaatt cttcgcaaat ttccttataa aaagaatttt cacaaattaa attaaccagt
    21121 gctaaagaat gttttgtttc catagctttt tttaagaaaa aataaatttt ttctaaattt
    21181 ttagcacata aatcattaat ctttgaaagt tttaagatag gatgagcatt gaactcactc
    21241 tcaaatttaa aacgatttgc actggctagt tcttctaagt ctgcaaaaag cccaagctgg
    21301 taatttcttt tttgatggtt ttgcaaattt acacttttat caggttctaa aaaacccctt
    21361 atcaagctac catgacctaa ttttaaaaga gcatcaaaaa tttcctttgc taaaactccg
    21421 cctactcctt tggtatactg aaccaaatga ataaatgcca tgatatcctt aggatttacc
    21481 acaagagcaa gcatagcact aaaggcttta acctccaagc tttcaaaaaa actcccgctg
    21541 ccttttctca cacttgcgat cccttgctct cttaaggcca cctcgatacc atctgcactc
    21601 gaattattgc gaaaaataac agcaatttct tccaagctca ctccgctagt aagtatcatt
    21661 ttggctatat tttgatattg atcaaacaat tcttcaaaag tcagtaaaga aggggcttta
    21721 aattcatctt ttcttgtaac tataagctcc tttggataga gtctttcgtt gtttaaaatt
    21781 accttatttg ccaaagctag aatacttctt gaagaacggt agtttttgtt tagagaaaaa
    21841 atttgagcat ccttaaaacg ctgcttaaat ccacctatta tgttaatatc tgcaccatta
    21901 aaagcataaa tactttgatc ataatccccc acacaaaata agctcttact ctcaaaagcc
    21961 tcgattaaag aactctgaag cgcattagta tcttgatatt catctaccaa aatttcatca
    22021 aattcgtatt ttttttcatt taaaagagtt tttaaattca aaagtaaatc gttaaaatct
    22081 acataattaa aacgcttttt ttcttcactg tattctttta atatatcttc ataaatttct
    22141 gcataaatac tttgatcttc ataatttacg caaaaccaat ggtaaaaatc ttgatcataa
    22201 gccttgtttt gaaataaaga atatatatca tataaatagc ttgactgata aggttttata
    22261 tcacttaaat gtctaaaggt tcttttttca taaacacttt taagtagggt ttttaactca
    22321 ctggcctgtt ttaaaaccac atctttattt gcgcttttaa gcaaggtata ggctgtgcta
    22381 tgaaaagttc ctgctaaaat ttttcctgta atatttttgt caaaatattt ccccaaacgg
    22441 cttatcattt ctttactggc tttattagta aaagtcaaaa gcatgatttt ttgcggcgat
    22501 acaccttggc ttaaaagata agaaattctt gcaactatgg tagaagtttt tcccgtcccc
    22561 gcgcttgcta tgatcagatt gtgtccaaaa tttgcagtag cagctaaata ctgctcttca
    22621 tttaatctag aaagtggcat ttttttcctt aaaaagcacg aattatagaa aaaaaatgct
    22681 taaaaatata aaaatttaac atttatttat attaatatat agtacaatat tcaatttatt
    22741 ttatttgtta aggaattaaa gatgaatttt aaattttttt ctattattgt agggatttta
    22801 gtcgttgtga ttttaatact tagcggaact tattactatc tttttgagta ttctaaacct
    22861 agctatacac ctataacaca aacttcaaca gaacaaaacc aatacagcaa taacacccat
    22921 acaacaaccc aaaactctta tgtttctgat attacaaata caaataatga aaatataaat
    22981 ttaatacaag acaagcaaga tgaaaaggat gcaaataaca tcattaacga tgacaacaaa
    23041 agcgatacaa aatcttctca aattacaaaa caaaacaatg aagaaaaact agcagcgatt
    23101 gaaaaagaaa tcagtaaaca gcaaaaaatt ttagaacaag aaaaaatatt taagcctcaa
    23161 aatacaaata acaataaaac aaattatcaa gctaaaaaac taagcccagc gcaagaatat
    23221 ttaagcttgg gaaaaaatag tcgccttgaa cctcaactaa gtacagaaaa tatgaaagtt
    23281 tatgtgcttg atggtaaatt cttaagcgat tatagaatca agcttttaaa agatatgtta
    23341 gcgattatag aagataattc taaagactat tttcttagtg tttttgttaa aatgctgcct
    23401 aagggagaaa tgagtttaac tatttacaat aaagatatta ttttctctga tatgaaaaaa
    23461 tcttataaat atataagtat ggataaaatt tcaccttata ttaaaacccc tgaagtgctt
    23521 aatcaatatg tagcacgcga agaaattata gaaagattta agcttcaaac taaaaaagaa
    23581 ggaaaaggaa gtgaattttc taagcatata aatagcttaa aaactggact taacaaggct
    23641 caatactttt ttccattttg tgaaatcata gaaattactt ccgtaaaata agccgcgtaa
    23701 aaaaggtaaa aaataatgta tgataaaagc atagaaaaaa catattatca aatttgcgaa
    23761 gagcgtgggt attttgaaat cgatggaaat aaagccatac aagaaaaaaa taaaaatttt
    23821 tgtatcatga tgccaccgcc taatgtaaca ggcgttttac acataggcca tgctttaacc
    23881 tttactttgc aagatattat gacacgatat aagagaatgg atggctataa agttctttat
    23941 caaccaggac ttgaccatgc aggaattgcc actcaaaatg ttgtagaaaa acaacttctt
    24001 gctcaaggca ttaaaaaaga agaattgggt cgtgaaaaat ttatagaaaa aatttgggaa
    24061 tggaaagaac aaagcggtgg aaaaatccta gatcaaatga gaactctagg aattactcct
    24121 gcttggagcc gcttgcgttt tactatggat gaaggcttag caaatgctgt aaaaaaagct
    24181 tttgtggaac tttacgataa aaaacttatc gtgcgtggaa actatatgat caattggtgc
    24241 actcacgatg gagctttaag tgatatagaa gtagaataca aagaaaacaa aggcaaactt
    24301 tatcatataa aatattattt aaaagatagt gatgaatacc tagtcgtagc aacaacgcgt
    24361 cctgagactt tttttggtga tactgcagtc atggttcatc ctgatgatga gcgttataaa
    24421 caatttatag gaaaagaact gatcttgcct ttgagcaata aagccattaa aatcatagct
    24481 gatgaacatg tagaaaaaga atttggaaca ggggttgtaa aggttacccc tgctcatgat
    24541 atgaatgact atgaagtagg acttagacat aatttagaat ttataagtgt ttttgatgaa
    24601 aaaggaattt taaacgagca ttgtttggaa tttaaaggct tagaacgatt agaagctaga
    24661 gataaaattg tagctaaact ggatagtctt ggctttatag ataaaataga agaacataac
    24721 aatcaagtag gatattgcta tcgttgcaac aatatagtcg aaccttatat ttcaaaacaa
    24781 tggtttgtaa agcaagaaat cgccaaagaa agtatagaaa aagtagctct tggcgagagt
    24841 aaattttatc caagccattg ggttaatagc tttaatgctt ggatgaaaga tttaagggct
    24901 tggtgtattt caagacaact ttggtgggga catcaaattc ctgtgtatta ttgtgaatgc
    24961 tcgcatgaat gggcaagtca agatacacca aaagcttgtc caaaatgcgg agggcaaaat
    25021 ttcaaacaag atgaagatgt actcgatact tggttttctt cgggactttg ggcaataagt
    25081 acacttggat ggggaaatga tacttgggga aaagataaaa tctggtttga agaagattta
    25141 aaagaatttt atcctaattc tttattgata accggttttg atattttgtt tttctgggta
    25201 gctagaatga tgtttcaaag tacaaatgct ttaggggctt taccttttaa agatatttat
    25261 ttacacgctc ttgttaaaga tgagcaaggt agaaaaatga gtaagagtct tggaaatgtt
    25321 attgatccaa atgaaagcat taaagaatat agcgccgata tcttgcgttt caccttagcc
    25381 ttgcttgcta tacaaggacg cgatatcaag cttagcaatg acaaactttt acaagttaga
    25441 aatttcacaa ataaaatcta taatgcgaca aattatctac ttttaaatga agagcaattt
    25501 gaagacttag aaaagataga acttaaaagc gcattagctc aatttgttta ttctagattt
    25561 caagattgtg taaaaaatgt gagagaaaat ttagacaatt atcgctttaa tgatgctgca
    25621 aacacacttt ataaattctt ctgggatgat ttttgcgatt gggggataga acttagcaaa
    25681 gctcaaaaag aatcagtaaa agaactagga agcattttca aagaggcttt aaaactctta
    25741 aatcctttta tgccatttat cagtgagtat ctgtatcaca agcttagtaa aagtgaactt
    25801 aaaacaagtg cctccataat gataagcaaa tacccacaat ttcatgcaaa aaattccaat
    25861 atagaagaaa ttttctcttt gatcatagaa agcattgtta gcatacgccg cgctaaaagc
    25921 cttgtggatt taggaaattc aaaaatagaa aaagcctata ttaaattaaa tgataaaaaa
    25981 atgcaagatg aaatcaaatc ctatatgaag ttcatcacca tgcttgccaa atgcgaaaat
    26041 atagaattta cagaaaacaa actacaaaaa gccatttgcg atgtaagtga aaatttagaa
    26101 attttcatca cgcttaataa tgtagattta agcggtattt taacaaggct tgaaaatcaa
    26161 aaaacaaagc tagaaaaaga aagtaccaaa ctaaatgcta tgttgtcaaa tgaaaaattt
    26221 attgccaatg cgcctaaaga agtcgtagaa cagaataaag aagctttggc aaatttaaaa
    26281 actcagcttg aaaaaatatc agctgaacta gcaaatttaa aaggttaaaa actttgataa
    26341 aaatacaaaa tttaaaaaaa tattacggaa aagaactggt tattaatgat gtttccttgg
    26401 agataaaaaa aggtgaaatc tatgctatcg taggacacag cggtgctgga aaatctactc
    26461 ttttaagatg tatcaatgga cttgaaagct atcaagaagg aagtttaaaa gtgcttgatg
    26521 ctgaaataaa agatctaagt caaaataatc ctaaaaagct tagaatgtta agaaaagata
    26581 taggtatgat ttttcaaaat tttgccttaa tggaaagaaa aaatgtattc gaaaatgttg
    26641 caatgccttt aagaatgcat tatagccaat gcaaaattta ttctaagctt tttggcaaag
    26701 aatatatgag cgaaaaagat ttaaatcaaa aagtcaattc tttgcttgat gttgtagggc
    26761 ttgatcataa aaacaaagcc taccccagag aacttagtgg ggggcaaaaa caacgcgtgg
    26821 ccattgctag agccttgact ttaaatccta aaattttact tagtgatgaa gccacttcag
    26881 ctcttgatcc taatacaaca aaaaatattt tagaactcat tgctaaaatc aatgctgaat
    26941 ttggaataac cgtggtttta gtcacacacg aaatggatgt tgtaaaagat gttgctcaaa
    27001 aagctttact tttagaacat ggtcagatta taggaagtgg cgcaattgat gagctctttt
    27061 taaaacctaa tgaaaaaatg aaagaatttt tgggcgaaag tgatttcttg ccttcaacag
    27121 gtttaaatat caagctttac ttcccaaaag aagtagcgca aaatagtatt attacgcata
    27181 tggcaagaac tcttaatatc gattttaata ttgtttgggg taaaattgaa aagcttaatg
    27241 gaaatgcttt gggaaatcta gtgattaata tcgatgaaaa ggataaaagt aaagttctta
    27301 attatataga acaaagtggg gttttatggg aggtagtatc atgaatgaag tgtctatatt
    27361 tgatgcattt ttgggaagaa tttcgcaatt ttttactgaa ttttcttggc aaggtatcaa
    27421 agaggtatct ctaaattcca tcagcacctt tgcacaaaac tatgaaaata ttttaaaacc
    27481 tgctttaaat gaaactattt atatgagttt aatggctgta ttttttggtt ttattttagc
    27541 tataattcct ggaattttac ttgctatttg ggataaaaat ggtatcaagc ataataaaat
    27601 cgcttatgcg gttttagatt ttatcaccaa tcttttaaga gcttttcctt ttcttatatt
    27661 gattgttgtg cttttacctc tttctaaaat tatagtgggc actagtattg gcacaaatgc
    27721 agccatagtt cctttagcta taggtatagc accttatttg gcaaagatgt tagaaagtgc
    27781 ttttaaggaa gtagatcatg gcattataga agctgcaaaa agctacggtg caagcaatac
    27841 tcaaatcatc tttaaagtga tttttaacga atccttgcca aatattatta gcggtataac
    27901 tttgactttg atttttacca taggtttttc ggcccttgca ggaactgtcg gtggtggcgg
    27961 acttggagat gtggcgattc gctatggtta tgaacgcttt aataaagaaa tcatgattca
    28021 aacggtagtt atcttacttg tattggtgca attggttcaa attttaggca atttatttta
    28081 cacttgggct aaaaatagca aaactttata cattcttgct actttaatag ccttatttgt
    28141 aattagcata atcatcaata taaacaacaa tgaaagtttt gtttggcaag caattatttt
    28201 aatcgttctt gctctgtgtt ttatttataa attccttaaa aataaaaaat taaatccggt
    28261 tttaatttaa atataagttt ttttaagtag aataagccaa aaaattttta aaaggattaa
    28321 cagatgatgc ctcagatgcg ctagtctgac tatcaagatt tctcataatg cttcttcctg
    28381 atagtcagag tgattaagat taaagcaagc acaaaaatga ctatataagg aaattaaaat
    28441 gaatatcaaa aatttaatcg tagcaagttt tttaggtttg gctgtaaatt taacagccgc
    28501 agaaactatc agtatcgcag caactccagt tcctcatgtt gaaatattag agcaggtaaa
    28561 acctgaacta gaaaaacaag gttataaact cgaaatcaaa gaatttacag attatgtttt
    28621 acctaatcta gccgtagaca gcggagaagt ggatgcaaat ttctttcagc acacacctta
    28681 tttagaagaa ttcaataaaa ataaaggtac caaactcacc aaagtagcta atgtgcatat
    28741 cgaacctatg gctgtttatt ctaaaaaata taaaagttta gatgatatca aagaaggtgc
    28801 tactatagct ataccaaatg acccaaccaa tgagagtaga gctttagata ttatcgcaaa
    28861 aaaaggtttg gtggaattta aagaaaaagc tcttaaaact ccacttgaca tcacaacaaa
    28921 tccaaagaaa ataaaatttg tagagcttaa agctgctcaa cttccaagag ctttaaatga
    28981 tgtggatttt gctgtaatta attctaacta tgcactttct gcgaatttaa atccagctca
    29041 agatggcgta tttatagaag ataaagaaag cccttatgca aacatccttg tagtaaaaac
    29101 aggaaatgaa aatgatccta aaatccaagc tttagcaaaa gctctacaaa gtgagaaagt
    29161 taaacaattt atcatcgaaa aatacaaagg ctcaattcta cctgcatttt aatccttgtc
    29221 ccttttttag ggactcttct ttttttaatc accaaaggag ttttttatga aattatttaa
    29281 aattatttta ttattttgct tactgaattt aagtcctata tttgccaaaa ccataaccat
    29341 aggagctaca ccaaatccct ttgcaagctt actggaaaaa gttaaagatg attttaaaga
    29401 taagggttat gaattaaaaa taatagaatt ttctgattat atactgccta atagagcctt
    29461 agaagaaaaa gaacttgacg caaatttata tcagcacaaa ccctttttag aagaatacaa
    29521 tgctcaaaaa ggcacaaatt taaccccaac aacgcctgtt gtcatcgcac cagtaggaat
    29581 ttatagcaaa acaattaaag atttaaagaa tcttaaaaaa ggtgctaggg ttgctatacc
    29641 taatgacgct acaaatgaga gtagagcttt ggagctttta gaaaaagctg gcttgattga
    29701 gttaaatcaa aatactctta aaaccccatt agatataaag aaaaatccta aaaatcttaa
    29761 atttatagaa ctaaaagcag cacaactccc aagagcttta gatgatgtgg atattgctgt
    29821 gattaattct aattttgcgc ttggagctgg actgaatccg attaaagata ccatctttag
    29881 agaagataaa aatagccctt atgtaaatta tgttgtggtt cgttttgaag ataaagacaa
    29941 tgaaaaaact aaaatcatag atgaaatttt aagaagtgat aaatttagaa atattattga
    30001 tgagcactat aaagatgtgc taatccctgc attttaagga gtttttatga aatttaaaaa
    30061 aatattactg agtgtttttt gcataacaag ttttctcttt ggagccgaaa agagtatcat
    30121 tataggagca acgcctactc cttatgctga aatcttaaat tttgcaaaac ctatttttaa
    30181 agaaagaggt tggaatcttg aagtaaaaga atttagtgat tataatatac ctaatatctc
    30241 gcttaatgaa aaagatttag atgcaaattt atatcaacac aaaccctttt tagaggattt
    30301 taacgctcac aaaggcacaa aattaagttc tttgggttct attgttttag ttcctatggc
    30361 tatttattct aatgatatta aagatattaa aaatatccca aatggtgcta aaattgctat
    30421 tccaaatgat gctaccaatg aaagtagagc tttggatttg cttgctaaag ctggtttgat
    30481 cgaatttaaa acttcaagca ctcttaaaac cccgattgat atcagtaaaa atcctaaaaa
    30541 tcttaaattt atagagctaa aagccgcaca acttccaaga gctttaaatg atgtagattt
    30601 agcagtcatt acgacaaatt atgcccttgg cgcaggactt aatcctctaa aagatggaat
    30661 ttttatagag gataaagaca gcttatatgc tatagttctg gcagtaagac aaggtgatga
    30721 aaaaaacgaa aaaagtctaa ttcttaaaga aattctaacc agtgataaaa taaaaaattt
    30781 catcaatgag caatacaaag gctctgttat acctactttt taatccaagc aaagccttta
    30841 aaggctttgt aaatttgtat tgggtaaaat ataaaagatt aataccatat taggctggca
    30901 atgagaatta tatcttttat tttttttgtt tttattggtt taagccatgg tgcaaattta
    30961 gaagagatta aaactgcact tgtcaaagaa tttaaaaaca attttccaag tttaatcatc
    31021 aaaaatatcg atttaaaaat cactacttta cctaaagatt tcgaacaata tcaatttata
    31081 agaatagcca atgctcgttt taaccaagcg caaggattta taagggctga atttaaaacc
    31141 ccacaaaata tacaaaaaaa tgtatttttt cgttatttta tgcaagcaag tttagaagta
    31201 ttaaaaagtg agcgctctat acaaagagga gataaacttg gcgcttttga ctataaaagc
    31261 gtacttatgg actttgataa agttccctct aacgctctcg ctcttgaaga cactcacaat
    31321 ctcatagcaa aaagcaatat cagtaaaaat actattttaa aagaaaatat gtttaaaacc
    31381 atggctctta ttcgccgcaa tgaccctata ataggtgttt taagtgatgg aaatgttgat
    31441 gtattaatag aactcacagc cttacacagt gccgatatgg gagaaagaat tcgagcaaaa
    31501 aacaaagagg gtaaagtcat gcaaggtata gttacaggaa aaaataggat gattatacaa
    31561 tgaaaatttt attaggaatt tcaggatcta gtagtacgca tttaggactt aaacttttaa
    31621 aaaatttgga aaataaatgc gagctttatt gtattattac tgaaggtgca aagataagtt
    31681 ttgaagctga aaataagaaa aacttggaaa aaatttgtca agaacaattt caaaatatct
    31741 gttttttaaa tgataataac ctaagcgcaa gtgttgcaag cggatctttt agtatagaaa
    31801 aaaccatcat tgcaccctgc tctatctcga gccttgctaa aattcacgca ggattagccg
    31861 acacactttt gatgcgagct gctgccgtgg ctctaaaaga aagaaaaagt ttgattttag
    31921 gagtaagaga aatgcccttt tcaactttaa ttttagaaca tatgcacaag cttagtcaac
    31981 taggtgttat catcgcacct cctattatag cgagctattc tcatgctagt aatttagaac
    32041 aaatggaaaa ttttatcata ggaaaatggc tagatctttt aggaatttct cataatttat
    32101 acgaaagatg gcagaatttt tagcttaaat ttgttatatt tttaaaaatt tttggagtaa
    32161 aaatgacttg tttatatcca gggacttttg accctattac aaatggacat ttagatgtga
    32221 ttaaaagagc gcttaaaatc tttgataaag tgattgtagc tatagcaaat agcgagcata
    32281 aaaagccttg ttttagctta gaacaaagaa aggagcttgc aaagcttgct acttcacatt
    32341 taaacaatgt agaaattatc acttttgata atctccttgt agatttagcc aaagagctca
    32401 aagtaaatac catagtaaga ggacttagag cagtaagtga ttttgaatac gaactacaaa
    32461 ttggctatgc taatcacgcc ctttgggaag agattgaaac catttatcta atgccaaatt
    32521 taaaaaatgc gtttatctca agttctatag ttagatctat tgcttcccat ggaggagata
    32581 tcagcacttt agtccctaaa gaaattttac cctttttaaa ggatttgcct tgtatgtagt
    32641 ttttgaaggg gtggattgtg ttggtaaaag tacgcaaatt tcacttttaa aagaatgttt
    32701 taaagaagcc gtttttactg cagagcctgg gggaaccaaa ctaggcaatc acctaagaga
    32761 gcttttactt tataaaccct atcaacttga caaaaaaacc gagcttttgc tttttttagc
    32821 tgatcgtgcg cagcactgtg aggaaatttt aaaagcaaat caagataaac tcattattag
    32881 cgatagaagt tttatttcag gcatggctta tgcaaaagat tttgaaaacg aagagctttt
    32941 tagacttaat gcctttgctt tagaaaattt cttcccgcaa aaagttattt ttttaaaagg
    33001 cgatgaaaat ttaatcaaag aacgtcttag ccaaaaagag caagatgcta tagaaaaacg
    33061 cggaattgat tatttcttaa gtgtccaaga taaacttgaa aatactcttt attttttaaa
    33121 agaaaaaata aatcttcaag ttttaaccct aaatgcaaat gatacaaaag aaaatttaca
    33181 ccaaaaaata aaggattttt tacaatgatt aatgctctaa aaggtatgaa agatttaagc
    33241 gataaagatg cgctatatta tgaaaaaatt atcaaaactt gcgaagaagt tgcaaaaaac
    33301 tacgggttta atttcatcaa tactccacat ttagagcaaa gcatactttt taaaagaagt
    33361 gtaggagaaa gttctgacat cgttggcaaa gaaatgtatg aatttacaga caaagggggc
    33421 aatgaagtct gtatgcgccc tgaaggcaca gcaggagtcg tgcgtgccta tatagaaaaa
    33481 aaattagata aaaacatcag cgtaaagcgt tggttttatc atggctctat gtttcgttat
    33541 gaaagacctc aaaagggtcg cttaagagaa tttcatcaat ttggagttga aagctttggt
    33601 atgcctagcg tttatgaaga tgcgagtatt attttaatgc tagtagaaat tttctcacgc
    33661 cttggtattg atttcaaact tcaacttaat tctttaggct gctcacaatg cttgccaaaa
    33721 taccgcgatg agctcgttga attcttagat tctaaagaag gtttttgcga agattgtttg
    33781 cgtagaaaaa atttaaatcc tattcgcgtt ttggattgta aaaatgaata ttgtcaaaat
    33841 ttgcttgaaa atgctccact tttaatcaat aatttatgta cctcttgcca aaaagacttt
    33901 gaaacactac aacaaatttt aaaggataat ggagttaaat ttgagttaga ttcaaaactt
    33961 gtgaggggct tggattatta ttctaaaacg gcttttgaat ttataagcga tgaaatagga
    34021 gcaaaagccg ccattgcagg tggaggacgc tacgatagac ttatagagta tttaggtgga
    34081 aaaagtggct atggtatagg ttttgccatg ggtatagaaa gaattatagc cattttagaa
    34141 caaaaagaag agttagaaaa aagagaggga atttatcttt gtgctatgga tgaaatttat
    34201 atcccaaaac ttttgcaaat tgctaccaag cttagaaaaa aacacaaagt aatcttaagc
    34261 tatgaagcta gaaaacttgc caagcactta gaaaatggag ataagataaa ttcaaaacat
    34321 tttctttgca tgggggaaaa tgaagcaaaa agcgaaagtt tgttttataa aaatttagaa
    34381 aacaaagatg aaaaagtgat tcaaatttca gatttggaga atgctttatg atgaattatg
    34441 gaattgatat ctggggaaat gataatttta tcatcaaaaa tggtaaagtt tgtatcaatc
    34501 acgaaaaaaa acctgccatt atcgatatag taaaagagct aagagatgat ggatataaag
    34561 gccctttgct cttaagattt cctcatttga ttcaaaagca aattgaaagt atttatggaa
    34621 gttttaataa agcaagaaag gaatttaatt ataaaggaaa attcaatgcc gtttatcctt
    34681 taaaagtcaa tcaatatcct ggttttgtaa aaaatctcgt tcgtttaggt aaggattata
    34741 attacggtct tgaagcaggt tctaaggctg agcttttact tgccatggct tacaataacg
    34801 aagatgcgcc tattaccgta aatggattta aagatagaga gcttatcaat ataggcttta
    34861 tcgcagctga aatgggacac aatatcacct taaccataga aggactaaac gagcttgaag
    34921 ccattgttga tatagctaag gagcgcttta agcctaaacc caatataggc ttgcgtgtgc
    34981 gtttgcactc tgcaggtgta ggaatttggg caaaaagcgg ggggattaat tctaaatttg
    35041 gacttacctc tactgaactt atagaagctg taaatttact caaagaaaac aagcttttag
    35101 agcaatttac catgatacat tttcatcttg gttcgcaaat cactgaaatt catcctctta
    35161 aaaaagcctt aaatgaagca ggtaacatct ataccgagct tagaaaaatg ggggctaaaa
    35221 atttaaaagc tatcaatcta ggtggcggtt tagcagtgga atactcgcaa tttaaaaatg
    35281 aaaaaagtag aaattatacc ttaagagaat acgctaacga tgtggtattt atattgaaaa
    35341 atatagccga gcaaaaaaaa gatcttgagc ctgatatttt tatagagagc gggcgttttg
    35401 tcgcggccaa tcacgccgtt ttagtcgctc ctgttttaga gcttttctct caagaataca
    35461 cagaaagcaa gcttatacta aaaaagcaaa atccaaaact tatcgatgaa ctttacgatc
    35521 tttacaaaag cataaagcct tccaatgctt tagaatattt gcacgatagt atcgatcatt
    35581 tagaaagcat cttaacactt tttgacttag gttatgtgga tttgcaagat cgttctaatg
    35641 ctgaaatttt aacacattta atcacaaaaa aagccatttt gcttttaggt gataagcaaa
    35701 atcctgcgga tttacttgct atacaagatg aagtgcaaga aaggtatttg gtaaattttt
    35761 cactctttca aagcatacct gatttttggg gcttggagca aaatttccct atcatgccac
    35821 ttgatagact tgacgaagaa ccaacaagaa gcgcaagcat atgggatata acctgcgata
    35881 gcgatggcga aatttcgtat tctaaaaaca atcctttatt tttgcatgat gtagatgtag
    35941 aaaaagaaaa ttattttcta ggttttttcc ttgtaggagc ttatcaagaa gtgcttggaa
    36001 tgaagcacaa tctttttacc catcctaccg aagcaacgat aagtgtcaat gaaaaaggct
    36061 atgaaatcga agggattata gaagctcaat ccatacttga tgctttagaa gatctagact
    36121 atgatataca tacgattatg gatatactta atgaacgcat tagcaattct aagcttgtca
    36181 atgaaaagca gaaaaaacac attttaggcg aactttatct tttcttaaat gataatggct
    36241 atttaaaaag cataggagta taaatgggat ttttcggcat tataaaagaa gatttttccc
    36301 aaccaaaagt acaagatcca gcgtataatt cttgtgtaga actttttttt aattacccgg
    36361 gtgtatgggc ggtagtaaat taccgctttg cgcatttttt ttatacaaaa aatttcaagc
    36421 gcaccgctag gataatcagc ggaatttcac aatttttaac aggcgtagat ctacatccgg
    36481 gtgcaacttt aggcagacgc atttttatag atcatgctaa tggagtggtg ataggacaaa
    36541 ccgcggtcat agaagatgat gttttaatct atcaaggcgt aaccctaggc ggaaccagtc
    36601 ttgaaaaggg tattaaacgc catcctacca tcaaaaaagg agtgattata ggctcgggtg
    36661 caaaagtact cggtaatatc actataggag aaaatgccaa aataggctcc aatgccgttg
    36721 ttgttaaaga tgtaggagca aatttaaccg cagtaggaat tcctgcttat atagtagaag
    36781 agcgtcgtaa aaacaaggaa aacacaaggg ctgttgatgc aaactgcgaa gacaagctcg
    36841 aaaagctaga gagaaaaatt gcagaacttg aaaaagcttt atcagatata aaataatata
    36901 taaaaatctt atatattatt ttatattttt taacctttaa cgaatttgca cattagttca
    36961 tttttacatt attaattttt aattaaattc actgcataag tgtgtttttt tgctaaaatt
    37021 agacaaaaaa ttcaaaagga caacagatgt taacccaaag atcacaagtt ttagaagaat
    37081 ccatcactct agcaatcact gcgcttgcta acgagttaaa agctaagggt gaagatgtga
    37141 tcagcttctc cgcaggtgag cctgattttg acaccccgca aaccatcaaa aatgcagcta
    37201 ttgctgccat agaaaagggt tgtggtaaat acactgctgt tgcaggaatt gctgatgtat
    37261 taaaagctat tcaaaacaaa ctcaaaaaag acaataatct tagctatgaa acaagtgaaa
    37321 ttattacaaa tgtaggggca aagcattctc tttttgaatg tatagaatgt ctagttgaag
    37381 aaggcgatga agtcatcatt cctagtcctt attgggtgag ctatcctgaa atggttaaat
    37441 ttgcaggtgg aaagcctgta tttatcgagg gtttagaaga aaatggcttt aaaatcaacg
    37501 cagagcagct taaaaaagcc atcactccta aaactaaaat tttaatgctt aattctcctt
    37561 caaatcctgt aggctctatc tacaacaaag aagagctttt aagtattgct aaggttttag
    37621 agggtacaaa gattatcgta ttaagtgatg aaatgtatga aaaacttcgc tacgatggct
    37681 ttgaatttgt agcttttgca agtgtaagcg aagatgcttt aaatcgcact gtgaccatca
    37741 atggacttag taaatgcggt gctatgcctg gatggcgttt tggctatatg gcaagtaaaa
    37801 acaaagcctt gatttcagct gttaaaagac ttcaaggcca aagcacttca aatatctgct
    37861 ctatcactca gcacgctgcc atacctgcct taaatggaga atgtgatgag gatatagaaa
    37921 aaatgcgtca agcttttgaa aagcgtcgcg atttagcctt aaatatgctt catcaaattc
    37981 caaatattag cgtctataag cctgaaggag ctttttatct ttttgtaaat actcaaaaaa
    38041 ttgaaaaaga ttctatgaaa ttttgccaaa aattactaga acaagaaaaa gttgctgtag
    38101 ttccaggtat cggttttggc atggatggat attttagact ttcttatgct acaagcgatg
    38161 aacttatcaa aaaaggcata gaaagaatag caaattttat taaaaattat aaataattct
    38221 aggtttaaaa cctagaattg ctaactttgt taggcaatca aataaaattc aaatgaccca
    38281 aatttaaact ttctcaaacc caaatttcaa aataaaacca aaaaatcaag gttttttaag
    38341 cactgcattt actctttgga ctttatctag tttatttaaa ctaagtctta tcacagaatc
    38401 ttctaatcct cctaaagaat gaggcacatt tgcttctaag cttatcatat ctaaagtatt
    38461 gaattcaaat ttctcatttt ctacttcaaa ccaaatttta ccacttaaaa cttgcacgcg
    38521 gatagcaaag ggtgctttat gctctttcat cacgctatct ttagcaagta aaatttgaat
    38581 ttccttgctg tgctcatcat cgattaaaac attgattttt acttctttgg ggctaaaatc
    38641 cgctttattc cattgagtga ttttcataaa atctcctttt taattttata agattgtaac
    38701 aaaaatcaaa acacagacta taaacttgtg ttaattttat ccttctttcc accaaaaatc
    38761 ttgctcaaac tcacttccca cctcataagc ttcgcccatt tttggtgtaa tcaaaggcaa
    38821 atttgaattc tcataaagat attctaccac tccattccac gcatgagttc ctgctaaaaa
    38881 ccttccccaa tgtataggca ttaaagcttt tgcattcaaa tcttttgctt cttttaaaat
    38941 ttgatcagga aaagaatgcg aaaaaggcca agcggcatta aattgaccgc tttcaagaca
    39001 aactaaatca aaaccaccaa aataagcccc gattttttta aaatgtgtaa aatatcctcc
    39061 atcgccacta aaaaacaccc ttttgtccgc gcttaaaaat tccatcacaa aagaagccca
    39121 aagagtttta tttaacccat cgcccctgct tgaactatgc tgcgcaggcg ttgcaacaat
    39181 ccttaaatca tcaaattcca ccccactcca ccaatcaagc tctatgattt ttttctcact
    39241 cactccataa ctttttagat aatttcctac ttttaaaggc gcgataaaaa atttagccct
    39301 atcttttaaa gttttcacgc ttttttcatc taaatgatca aaatgagaat gagtgataat
    39361 cacggcaaaa atttcatcaa aatcattggc attataaaca ggtgcatttt taaaagcttt
    39421 attaataaaa gaaaaaggtg aagcgtgagt gttaaagata ggatcgatta aaattttata
    39481 gtttttataa ctcacaaaaa gcgatgaatg tccaagccaa gtgatgtgcg gagtacgaac
    39541 atactttaaa tttggcttaa aaaaaggaag tttaaaagtc gccttagtat ttttagggta
    39601 aagataataa tacctcaaaa cttccctaaa agacacttta aaagcattat gtgtttgggg
    39661 attttcatta agaaaaattt catatttttt accctgcact tttttagctt tttggcgttc
    39721 tttactcgaa agatcaaagg ttttaaatga caaattcaat tttttccttt tttatgttta
    39781 ttaaaattat atccaagaaa tttttagatt aattttattt tacacaagtt tttggtttac
    39841 ttgtgttaaa atgtccaaat caaatattga ataaaatgat gtaaaaataa aatttatata
    39901 aactagacaa aatacttcaa gaaattgatt ttatatttaa acaaaccaaa ggcgagctta
    39961 tgcaagcttt aaaaaatgaa atcaaacaaa aagctatttt catgtcacta atcaacatta
    40021 aagaaacgat aaaaaatatc caagatagtg cagatgctga agttatggta attttttgcg
    40081 aagaagatat gaaaagactc tcaaaaagta gaaatattgc agcacataat agtcaagcca
    40141 tggatttaaa tatcgtaaca aatcttattc gttacgatct agcaagactt aaacaaagta
    40201 ttgttaattt taaaaataat ccaaacaatt tacattttat tccaaaagaa gaaaatgtca
    40261 aaaaaaagaa tactaaaacc actagaagta ttaattattt ttttatttgt atgcatttta
    40321 tcttgtatta tatttattac ctttttttac ttaacaagcc ctccaaaagc ataagacaag
    40381 gaaatttttc atacaacttt catacaagtt atttttattc attagatcct tttattctta
    40441 acttaccaca agctggcaga caaaaatata tacactgcac cattgattta gaattaataa
    40501 aagaaatttc tttagaagat tttacaaaaa tttcacccgt tattagagat actattattc
    40561 aaaccattct agcaaaagaa atacaagaaa ttgaattctc taatttcaaa ctagaacttc
    40621 aaagagaatt agttaaaaaa attaatgaaa aattaggcaa taagctgatt aaagaattat
    40681 attttagaga ttttatcatc tcttgaaaat ttttataaaa ttttcaagcc ttttaaaaag
    40741 gcttgaatag agattttaag attactcaac ttcagcgtcg attacatcgt catctttttt
    40801 ctttttatca tttgctgtgt ttggctcatc ttttttatac atattttcag ctagtttgtg
    40861 agaaacttca cttaaagctt tcattttagc ttcgatttct tctttacttg cattttgatt
    40921 tttcaaagtc tcacgcaaat catcaagagc tttttggata ttttctttat cgctatcagc
    40981 tactttttct ccaagctcat ttagagattt ttccacttgg tgcgccaagc tatctgctgc
    41041 atttctcaca tctacggctt ctttgcgttt tttatcttct tctttgtgaa gttcggcatc
    41101 ttttaccata ttgttaatct cttcttcact aagtccgctt gaacctgtga ttttgatctc
    41161 ttgtgcttta cctgttgctt tatcttttgc agaaacagtt aaaataccat ttgcatcgat
    41221 gtcaaaagtt acttcgattt gtggcatacc gcgtggtgct ggtggaattc cttcaaggtt
    41281 gaaatttcct aaagatttat tatcacgact aaattctctt tccccttgta aaacattgat
    41341 agttacagca ctttgattgt cttctgcagt tgagaaaact tgctcttttt tggttggtat
    41401 agttgtacct ttttcgatga ttttagtcat cacaccgcct aaagtttcga tacctaaaga
    41461 aagtggagtt acatcaagta aaagtacatc ttttacatca ccttttataa ccgcaccttg
    41521 aatcgccgca ccgatagcca caacttcatc aggatttaca gatttgttaa gttcttttcc
    41581 aaaagctttt ttaacctctt cttgcactaa aggaacacga gtagaacccc ctaccataac
    41641 gatttcttta atttcatttt tatcaagccc tgcatctttt accacttcat tgatcttagt
    41701 gatagtttca gccactaaag aatcaatcat accttcaaat ttagctctag taagtttttt
    41761 aaccaaatgt tttggcccac ttgcatctgc tgtgataaat ggtaaattaa tttcagtttc
    41821 attagctgag cttaattctt ttttagcatt ttctgctgct tctttcaagc gttgcaaagc
    41881 cataacatca tttttaagat ctatgcctgt ttcatcttta aattcattag ctagaaaatc
    41941 tataagttta ttatcaaaat catcaccacc taagaaagca ttaccacctg ttgctaaaac
    42001 ttctactaca ttatcccctg tttcaagtac ggtaacatca aaggttcccc cacctagatc
    42061 ataaaccaca attttttcac tatctttttt atcaagtccg taagctagag ctgctgaagt
    42121 aggctcattg ataattctta atacattaag tcctgctatc gttcccgctt cttttgtcgc
    42181 ttttctttgt gcatcgttaa aataagcagg cacagtaatc accgcatcag taacactttc
    42241 acccaaaaaa gcttctgcat cttcttttaa tttcatcaaa acttttgctg aaatttcttg
    42301 tggggtgtaa attttacctg cgatttctat tgcgcacgca ccatttcttt cagtgatgtg
    42361 gtaaggaagt ctatttttag cttctttagc tgcatcttca ttgatcatta aacccataat
    42421 tcttttgata gaataaatgg ttttttcagg gttggttacc gcttggcgtt ttgcactatc
    42481 gcctactaaa acttcgcctt tatctgtaaa agctaccact gaaggagttg tgttttttcc
    42541 ttctttgttt gggattactt tactctcacc gcgttcatac acagcaacac aagaattggt
    42601 tgttcctaaa tctataccta taactttact cattttttat ccttctatta aaatttattt
    42661 tgctacacta actttggttg ggcggatcac gcgatcggct attttataac ctttttgaag
    42721 cacttgaacc acttcaccac tttgatggtt ttcactatct acatgaaaca ttgcttcatg
    42781 taaattagga tcaaactctt tttcatcttt gataagagcc actccatgtt tttcaagttt
    42841 cttaagaaat aaatctaaag tattttgcac tccttctttg atttttaagc taatttcatc
    42901 ttggcattcg acattaacag ctgcttctaa agcatctaaa acatcaagca aatcctttgc
    42961 aaagctttca tttgcataag ccatagcact tagcttttct ttttccattc tttttttaat
    43021 attttcaaat tcagcgtttg cacgcatata tttgtctttt aattcatcat agtctttttg
    43081 caatttgttt tgctcaacat cttcgatatt ttgcaaattc tcatcttgca aatgttcaga
    43141 attttctgcg ttttcgtttt caaattcttg cttttgctcg ctcacgccgc ctcctttatg
    43201 tattgtaata tctttttata atccgtataa acactacctg ctaagataat atttacatct
    43261 tcgcccaaaa actgcgcatc caccttaagc cccataaaac cttctttaaa taaaggttca
    43321 aattcaagac tttctttaaa atgacggtga atttgacaat ctaagagctt aacaaattca
    43381 tcattttgat aaatttgata agctctttct tcattgcttc tatagcaaat caaattttgt
    43441 cttaagctag ctattttttc tacaagatct ataaaatgaa ctctcaaagc tattttttct
    43501 atactagaaa gatcaagtcc tataagactt tgtaaaaaat tccacgcttc tttttcatat
    43561 tttaaaacga gctcttcttc tttaaaatca agtactataa acttagcatt tagatcaagt
    43621 acttctttaa gtactaaact tctacctcca taaacaagac aataaatttc aaattcttta
    43681 cttaactctt tcaaaaagct ttcgtttttg atatggatat ttttatcttg ttctttttcc
    43741 caaaaacttt gccaataatt ttgcatcgtt aaaatagtag gaattctacc actacttata
    43801 tgaagctgag tgatcaaacc ctcatcgcta agtcttttaa gataaacgcg tatagtcgaa
    43861 gcaggtatgc aaaggtttga atttaattca ttagaaccaa taggtgcatt atccaaaaga
    43921 taagtttgga taatagactc taaaatcaaa tcctttttat ctcgactttt catcatgttt
    43981 tcctttaaag ctagcactct attttttgat tgctagatat attatacaac attgagtgtt
    44041 attttgtcaa gtataaatat aaaaaaatat acttaatttt atttagtcta tataactaaa
    44101 gttttattag ttactttttt ataaggatag gatatatttc aagattggta aacagggtga
    44161 taattagata agaaatttta aatagattcg ataatttaac ttttttaaaa gcacaagatg
    44221 ctataaacaa aaaaccaaag aagcctttac aagctctttg gcttttctat caaagcttaa
    44281 aaactaccat taatggaaat atatattctt cttccttctt ctatacgatt gtaagtattg
    44341 acccaagtag gagcaccgct attttgataa gattcccaac catttgtaaa gcttttgtca
    44401 aaaagattat aaatagctgc attgatactc cattgcttat tgatatcata acgcacaccc
    44461 atagaagcta aaaagatatc cttataatac tctctattga tgttcgtatc acccatatag
    44521 cgatctattt gccattcgcc ttttatccaa ggggtaattt tattatagaa gctgtattca
    44581 gtttttaaca tgatattgtg ttttaaacta tcctgttcag gtttacctat cacactttta
    44641 tcttgtgctt ctttaacctc actatcaaga taagtataag caaaatttac atttaaatta
    44701 tcaagagggc ttatccctgc tccaagctct atgcctttat attcgacctt gccatggttg
    44761 attgccttaa aacatctatc agcaccacaa gtaccaattc ctggaatcat attgtcttta
    44821 ttatatcttt gggttgaaat tttatcttta aaatttgtta aaaaacctgt cgcagaaaca
    44881 taaaacaaat cattattgta aatagctgct atttcataat ttaaagatgt ctcttctttt
    44941 aaatcaggat ttccatatat aggaaatcta ccttgaccac tataattata agctccattt
    45001 atcaaacgat ttgcataagg agtcctaaaa cccgtagata caccgccttt taaagtaagt
    45061 tcatcagtag gattataaac tagataagct cttggcgaaa tattatttcc aaaaatttca
    45121 tgatgattgt atcttgctcc aaaagtcaat cttaagttat cttttatgct gtactcatcc
    45181 tctgcaaata ttgccaataa atactgatca aaattggtcg gattagctat tttatcttgc
    45241 attttttcaa gcctatattc accacctgcg cttaaaatat gactttgtcc caaaggaatg
    45301 acagacttag tatctaagat aatatcttct gcgactatat ctctattttc tcccaaaaac
    45361 ggctgtgtag cttgccctac gacttcacgg ccatcattgc ttaccctatt gtattgcaaa
    45421 ccagaagtga tagaaaagtt ttcataaaca ccctcatggc ttaaataagt tacaaattta
    45481 tcaacttcca taatatctgc ataaccaccc gttaagctac ctggtgttct acctggactt
    45541 gtaatagttc ctaattgacc ttgtttatta tcgtaatgat ttcttgaaaa atctatatca
    45601 aatataaagg tattataatt attagccaaa taactgactc ttgttcctat attaaaatta
    45661 tttgcttttg tgggactttg agcttgatct ccttgaactc tttgtccact tccatttgta
    45721 aattcaacat tagattgctg tctgtaaaat tctctaaatc gaagtgttag acccaatttg
    45781 tcattcatca aaggaccact agaataaata ctcgttccat aagtattacc ccaatcttta
    45841 ttttcattta aaagagcatc caaacttaca gaagtttccc atttatcact tacttttttg
    45901 gtaatgatat ttaccacccc gcctaaagct tcagagccat ataaagtact cataggacct
    45961 tttataactt ctattctttc tatgctagaa attggaggta ataaagaatt tgaaatttca
    46021 ttaaagccat taggaccaac ttccccgcca ataccctgac ggcgtccatc aatcaaaacc
    46081 aaagtatatc ccgtaatacc tctcatggta atattataag aacctgtttt tcccttgcta
    46141 gcatataaat caacgcctgg gatatctgcg atagcctctg caacatctct ataaggctta
    46201 ctttgtaatt cttttttact gataacattg atagtagcag gagcttcttt aatatcttga
    46261 gtaaagccag aagcactaac gattgagcta tctagttcta cattttgcga tatggcattg
    46321 gagcttaaga gaccaatggc gcaaactgat agacatattt ttttcatttt tctccttttg
    46381 ttaaatattg atttagaaat caaaatatta tgataataat tattaattta agataaattt
    46441 tgtatcaatt gtgataatta gtattaatta aaaatttatt ttttcttgct ataattctta
    46501 aaaatataag tttttttaga gaagtaaata gcaaaaatta aatatctttt agatacaagc
    46561 ttgattattt gattgttatt tttctctgtg aaatttgttt caaaatttat ctttttaaac
    46621 aatttaccat agaatgtgtt taagaaataa agatatttaa atcaaaaaat aaaatcataa
    46681 cggagtaaaa gatgaaaaca tttataagca atcataaaaa ccaatcttct tttatcactt
    46741 tatttgtttt tacaccttta ttttttgttt ttctttattc taaagatttt ttacacatac
    46801 aacccaatga aactattaaa gaaaataaat ttaatatggc aatcaaacat tttgtacaaa
    46861 attcctccga tatgaaaccg acacaaccca cacaaactat acaagagcct tcgaatgtgc
    46921 aacccaaaga acctgtgcaa gaaataaaaa aaataaaacc gagaaaagaa aaacctatcg
    46981 ctaaacctaa aaaaataatc cctccagcaa atgcaaaggc aataagtcaa cccaaaaaag
    47041 atacaaacat gcagcaacca atcatgcagc aacaaactcc acaagccagc tcttaccaaa
    47101 gcgtatcttt aactagcaat agtgaatttt taaaagaaat aaaatcagca atcgatgaag
    47161 ccctaatcta ccctagacaa gctagaaaaa tgcgtatgag tggggaggtt cttgtagaat
    47221 ttacctggac aaaagaaaag aaattagaaa atttaaaaat acttaaacct tcaaaatatg
    47281 attttctaaa taaaagtgct ttagaaacta tacgcatagc ttctaaaaaa tttccacaat
    47341 atgaaaaaac ttttcatata aaaataccat tggtatataa attaagctaa atctttcaca
    47401 atatactcta tttttaatgc aaatcactcc agctttgcta acgcttagaa gtagaagctt
    47461 cctagctaaa gctaactagt attagctaat tcgaaaggct ttgagtttat agtcctcaag
    47521 gctaattcct aacccaaacg actttaatcc acgctttaag atattatttg cagcattaat
    47581 atctctatgt aaagtgttgc cacatttttc acaaagatac actctatctt taaacataag
    47641 attttttttg atatttccac atacactaca agttttgctt gtatattgtg gattgacttt
    47701 tataaagaat ttaccattat gctttgcttt atactctaga tattgagaga attgatagaa
    47761 tgaaatatta agaatagatt tatttaaacc acttttagct tttatattct ttaatttagc
    47821 tcttttagac atattcttaa tttgcaaatc ttcgactgct agcaagtcaa attcttgtat
    47881 gagttttgaa gttatcttgt gataactatc ctttttgata tttgaacttt tttcatagat
    47941 tttatttaat tttaattgtg tttttttgaa attatggctt aactttgttt tctccttttt
    48001 tgtttttaat attctcctac tttgttttct ttgcaatctt ttaaatgcta aatcatattc
    48061 agctctacta agtagctttg agttagtagc tattaactct ccactgctta aggtaatctc
    48121 attgatattt aaatcaatgt caactgcttt tttaatatca aaatctttgc tagatattaa
    48181 agaaatattt gattcatcat aaatgatact aaaagctaaa tagtatttat tgtgattttt
    48241 gataatagtg atttgattaa acttataagt atttggtaaa tctctgtgat aacgcatttt
    48301 aaaaaatgta ttcataagtc taaatatctt aaacttagta gtatcactat ctttgatttt
    48361 gtaggcttga ttattccaat taaagctttg ctttgcaaat ttagagtttt taaatttggg
    48421 aaagcctttg tttttatctc taattgcttg ctctaaggca cgagaagatt aatccttgct
    48481 tgttgggtta caacactttt atagcttaat tctcttgctt ttataaggct agttttattg
    48541 attatctatc ttacttgcct ttaaataact cctatctttt ttatctaaat tcttattttt
    48601 atcccactgc tcttgctgta aatttaaaca aatattatag gcttgatata gatgaaacat
    48661 tgatgattaa taagcttttg ttgttctttg tttaggtaga attctatatt taaaaccttt
    48721 ggttatttgc attgctttgt tccattaggg ctttttttct ttttggttat atattttttt
    48781 agggtaatta tcttctatgc cttgattttc tgcatatttt ttaagagttt ctagcattat
    48841 tccgcatagg tattctataa aaaattactg attatgtcaa ataacctaac tagagccgta
    48901 caactaacac tgtaagcaat tcatctccca cttaagaagt gagagtttta ttgaataaaa
    48961 aagataaatt taaagcaaat aatctttttt tagacaacac taaacccttg catgtattta
    49021 cagcaatatt tatttcatca taaacaaccc cca
//
LOCUS       DARAII010000002        48594 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.002, whole genome shotgun sequence.
ACCESSION   DARAII010000002 DARAII010000000
VERSION     DARAII010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 48594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 48594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..48594
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.002"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1196)
                     /gene="dnaE"
                     /locus_tag="SB143_000050"
     CDS             complement(<1..1196)
                     /gene="dnaE"
                     /locus_tag="SB143_000050"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEF9748629.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELAKTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMRSEGLKPIIGLEAYLHNHEDISDKSSRQRFHLCLYAKNEVGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEEHSEGLICSSACLQGEVNWHLNIHSERNVRFGAKGY
                     EAAKEAALWYKKVFGDDFYFEIMRHGIGDQRAIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRLRHSVHEFYVKSPAQMSELFADIPEAIENTQEIA
                     NKCNLELNLGNPTPPNFKFTREYAKEYNISLPEEGKEFSFDNDDVVFDELCKKGLEER
                     LKFVDISKHEEYKTRLEVEINIIKKMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVAYS"
     gene            complement(1396..1725)
                     /locus_tag="SB143_000051"
     CDS             complement(1396..1725)
                     /locus_tag="SB143_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Spx/MgsR family RNA polymerase-binding
                     regulatory protein"
                     /protein_id="HEF9748630.1"
                     /translation="MKVYGIKNCNSVKKALEFLDKKALEFDFIDIKKIDLGVLENWLK
                     YKRFSEIINTAGTTSKKLGLNKDKIESLSELELKNIILENPSCIKRPVIEKDNQIYIG
                     KEYEQIL"
     gene            complement(1722..3065)
                     /locus_tag="SB143_000052"
     CDS             complement(1722..3065)
                     /locus_tag="SB143_000052"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEF9748631.1"
                     /translation="MTWTKNSWKNFSIKQQPIYFNQEELNKVLNKLEKLPPLVFAGEV
                     RELQSALARVCRKEAFLLQGGDCAESFANFGAVNIRDMFKILLQMAIVLTFAGGCPVV
                     KIGRMAGQFAKPRSSDYEEINGVKLPSYRGDIINGFEFNEKARIPDPNRMLEAYYQSA
                     TTLNLLRGFAKGGLANLHEVHRWNLGFLKKSELHQQYTDISEKISQALDFMEACGINT
                     YNTPSLKEVDVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRGLDEAHV
                     HFLSGVRNPLGVKIGPNASADDVIALANALNPNNEEGRLNIIIRMGAEKIATQLPKIF
                     SKLKKEGLNLVYSIDPMHGNTVKAGDFKTREFDKIMQEVRYFFEIAMSEGVYAGGVHL
                     EMTGQDVTECTGGASNVTAQSLEKRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            complement(3089..3502)
                     /gene="uraH"
                     /locus_tag="SB143_000053"
     CDS             complement(3089..3502)
                     /gene="uraH"
                     /locus_tag="SB143_000053"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEF9748632.1"
                     /translation="MLSTKKILLALISIPIFLNATEYQLSTHILDINSGQPASNVKVE
                     LYNLDQNRQWVKISEKFTKKNGRIADFLPYEKTENRSFGVYKLKFYTKDYYISHKVDS
                     FYPFVEVSFELLKDQKHYHIPITLSPFGYSTYRGS"
     gene            complement(3654..4010)
                     /gene="rplS"
                     /locus_tag="SB143_000054"
     CDS             complement(3654..4010)
                     /gene="rplS"
                     /locus_tag="SB143_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEF9748633.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPEFRAGDTLRLAIRIKEGDKTRIQN
                     FEGICIARRGNGVDETFIVRKMGANNVGVERIFPIYSESLESITVVRKGRVRRARLFY
                     LRDRRGKAARIKELKK"
     gene            complement(4021..4725)
                     /gene="trmD"
                     /locus_tag="SB143_000055"
     CDS             complement(4021..4725)
                     /gene="trmD"
                     /locus_tag="SB143_000055"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEF9748634.1"
                     /translation="MKFSFVSLFPNLLEFYFKDSILARAIQKELFQLDFLNPRDFTDN
                     IYHKVDDYKIGGGAGLLMQIKPLYNTLKFIKDSEKDPYFIFLNPSGKTFNQKDAKRLS
                     KKENIVFVCGRYEGIDERVIEIFANEVFSIGDFILTGGELPALTLCDAIARNINGVLG
                     NACSLEEESFENDLLEAPSFAKPFIFEQNFKKFYTPSEFLKGNHAKIATLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            complement(4722..5261)
                     /gene="rimM"
                     /locus_tag="SB143_000056"
     CDS             complement(4722..5261)
                     /gene="rimM"
                     /locus_tag="SB143_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002803049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEF9748635.1"
                     /translation="MSERNFIQVAKLGKTVGLKGYLKLYNLSDFIQQFKKGASFFTEN
                     GKSQLKIKHYNLANSSVLFEGYENVEAAKQLINLILYQSIEATRQTCILKKDEFFYFD
                     ILKCEVFDDERRLGKVVDILEVGDSYLFEIQSDQELIDKAYAKTFFIPYIDKYVNKID
                     IEKYSIFCTKDAFLILENS"
     gene            complement(5254..5496)
                     /locus_tag="SB143_000057"
     CDS             complement(5254..5496)
                     /locus_tag="SB143_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEF9748636.1"
                     /translation="MVENFLREYAKLIADYPDKIATEKIKLDENFAEIILYADKIDTG
                     KLIGKNGKMINAIKTVVSACKSKDSMSYRVTVKALE"
     gene            complement(5502..5729)
                     /gene="rpsP"
                     /locus_tag="SB143_000058"
     CDS             complement(5502..5729)
                     /gene="rpsP"
                     /locus_tag="SB143_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEF9748637.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVVKFDSERLAYWKSVGAKLSDKVASITSK"
     gene            complement(5797..7134)
                     /gene="ffh"
                     /locus_tag="SB143_000059"
     CDS             complement(5797..7134)
                     /gene="ffh"
                     /locus_tag="SB143_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEF9748638.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALDTLKKALLKADVHHK
                     VVKDLLLLIEEDVKKNGIGQKQFLEAIKTNLENILNADGKNQGFVFATKPPTVVLMVG
                     LQGGGKTTSTVKLANYLKLRNKKVLIAACDLQRLAAVEQLKQLCEANELDLFYIENEK
                     DPIKVAQQALEKAKNSMADVLLVDTAGRLAIDEALMNELKAVKNVLNPDEIFYVADAM
                     SGQDGVKTASSFNELLGITGVILSKFDADTKGGIALGITKQIGIPLRFVGVGEKIADL
                     EIFIPERIVNRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLTQMESV
                     KKLGSMKSIIGMIPGLSNVASSVKDLDLDNSKEIIHIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFANAAKLAKRFSGKKGMDSLMQMMNQARRQF"
     gene            complement(7202..7954)
                     /locus_tag="SB143_000060"
     CDS             complement(7202..7954)
                     /locus_tag="SB143_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEF9748639.1"
                     /translation="MQEKAYKLLALQENISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKTKFSIVKTSKPKVIFEDENIIAINKPYAYISEELEKKFNAKLLNRLDKETSGVILL
                     CKNEDFRKICIEEFKKQRVYKSYIAVLDGILAEEIEIDEPILTIKTKNGALSKISKEG
                     LSAVSIFTPIMMQAKKTLAKIIIKTGRTHQIRVHAKFIKHGIIGDEKYAKISSDRMYL
                     HSHEIRILNYQFKAELDSSFSKLGFEIKNLDF"
     gene            complement(7935..9092)
                     /gene="waaA"
                     /locus_tag="SB143_000061"
     CDS             complement(7935..9092)
                     /gene="waaA"
                     /locus_tag="SB143_000061"
                     /EC_number="2.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid IV(A) 3-deoxy-D-manno-octulosonic acid
                     transferase"
                     /protein_id="HEF9748640.1"
                     /translation="MIFLYYILVWIAFLLCAIPLFLLSLFKPKYKYSLKARFFLFRNI
                     SQKRSDVHFHVCSYGEARSVKELVLRFDSRITTITQTGYDYAKEICNKVNYLAFENWI
                     PFWLKPSKVLVIFEAEYWLMLVFIAKLQKSKVILLNARISDNSYASYKKFRFFYKKIF
                     CYIDEVFAQSEVDKIRLEDLGAKNVKIFSNIKSKLQIFPTQKYLKPKQKLIIFASTHK
                     GEEELLLKHYKMDKQEKLIIAPRHPERFLEVEQLLHDKGLKFDKFSLLQNEDKKFNQD
                     ILLLDCLGELVNFYAISDVVVLGGSFFEGIGGHNPIEVAHFNNVLISGIYIHNQKSLF
                     QEVDNVYFCEDLKELDGIIHNYNLKAKIAQNNDLSTIIQAIQEGIDARKSI"
     gene            complement(9089..9805)
                     /locus_tag="SB143_000062"
     CDS             complement(9089..9805)
                     /locus_tag="SB143_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEF9748641.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSFEPKMESISKTLKDAENKIAKFNV
                     ELNNLENEIQDVENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKELFKKELLEERAKEEQNLDEIRVSISSQMDGLEKERMNV
                     YTKKTKLVAEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVIKGE
                     EIITCPHCGRILYKEQEDQN"
     gene            complement(9815..10540)
                     /locus_tag="SB143_000063"
     CDS             complement(9815..10540)
                     /locus_tag="SB143_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEF9748642.1"
                     /translation="MKLIEIYNFLDKLSPFETQEIWDNSGLLLGNFNDEIHNVYLSLD
                     IDEQLIQNAEENSLFITHHPLIFKGLKDLANSAYPRAFVKEMLRKNLSLISMHTNFDI
                     SHLNTYFIEEILGFEISSKNKFLAYIDVDMSFEELCIVVKKRLNLEILRTSFCGKEYL
                     KRLAVCTGSGGDLLNEVKADCYLSGDFKYHQALEAISNHLNLIDLGHFESERYFAQCL
                     AKHLKNLPLKVIITVSKNPFQYF"
     gene            complement(10527..11390)
                     /gene="glyQ"
                     /locus_tag="SB143_000064"
     CDS             complement(10527..11390)
                     /gene="glyQ"
                     /locus_tag="SB143_000064"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEF9748643.1"
                     /translation="MTFSQMILNLQEFWQKQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWATAYVAPSRRPTDGRYGENPNRLGAYYQFQVLMKPSPDNIQELYLKSLENLGFD
                     LKSHDVRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKRSEYEFSKYNFEISNVDFLNQQFE
                     DTYKECKSILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKTCA
                     EIYKKNLDETD"
     gene            complement(11392..11946)
                     /locus_tag="SB143_000065"
     CDS             complement(11392..11946)
                     /locus_tag="SB143_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEF9748644.1"
                     /translation="MQTYLELQEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAN
                     QGTFSVVPSASNSKPAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLDALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNHELKHAREEIEFLKRKYKLMWSKTAEIFGARTE
                     PDLEMKKDENSSTANEKLNENKEG"
     gene            complement(11959..12453)
                     /gene="purE"
                     /locus_tag="SB143_000066"
     CDS             complement(11959..12453)
                     /gene="purE"
                     /locus_tag="SB143_000066"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEF9748645.1"
                     /translation="MKFVSIMMGSKSDYEIMSECAKTLEKFGVKYELIISSAHRSPKR
                     TQEYIKEAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMPGSALASMDSLFSTV
                     QMPGGIPVGTLAVGKAGAKNAAYLAMQILALNDETLAKALKQDRKNQEENLISDSKSV
                     EVLL"
     gene            complement(12450..13706)
                     /locus_tag="SB143_000067"
     CDS             complement(12450..13706)
                     /locus_tag="SB143_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEF9748646.1"
                     /translation="MIIPEIVAPAGNFAKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIEYTHQRGKKVYVTLNGFHLGGQIESLKKHILKLKEMKPDAFIVASVGAM
                     ALVRELAPEIALHVSTQANVLNYLDARVYKNMGAKRVVIARELSLKDAKSLKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGVLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMKEDCISAFKIEGRTKSEYYVALTTRTYKMAIQDVL
                     EGKFEASKYEKEIATLKNRGFTDGYLVSRPLEKADTQNHDTSIEEGTHQVHAIVEDGE
                     YFKCKGKVVLNKAYEILMPLGDEIETCDNKLGKIYKKEDKYFVEFKKLISKNNKEFNE
                     IHSGNENEIKMPNKISSFSFLRKEIG"
     gene            complement(13703..14407)
                     /locus_tag="SB143_000068"
     CDS             complement(13703..14407)
                     /locus_tag="SB143_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEF9748647.1"
                     /translation="MTQEELDALMNGDVNFDEDAESNIKSETESHNIESEEGLMLEDV
                     KVSDYKPDPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSEN
                     LFSEIDKVLAKNIEIFSKLNEKFPNVVSFNEALQLNSKVKKTSQEIIDKLQCGQDEVM
                     MAMDAMQYQDIHRQKIERVINVMRALSRYMSSLFEGRIDDKKRVSSAVHIEGDSTTDI
                     VSNDDIEALIASLGQK"
     gene            14606..16036
                     /gene="glnA"
                     /locus_tag="SB143_000069"
     CDS             14606..16036
                     /gene="glnA"
                     /locus_tag="SB143_000069"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEF9748648.1"
                     /translation="MGKFVNNVNEFFDFCKQNEVLFVDFRFTDMIGTWHHITYNLHAI
                     SEETFEAGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADSTIIVFCDVYDIYK
                     GQMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTE
                     EGEWNDDKDFADSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHH
                     EVAQGQAEIGVNFGTLVEAADNVQIYKYIVKMVAHLNGKTATFMPKPLYGDNGNGMHV
                     HMSLWKDGVNLFYDKEGYGGLSQTAINYIGGVLKNARSVAAFTNPSSNSYKRIVPGFE
                     APCILTYSCQNRSASCRVPYGIGKNSARVEIRFPDSTANPYLAFVSLLMAGLDGIKNK
                     TIPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRYNAFLKPVMSDIFIDDYQ
                     HLKFETQVWPVEARPTAYEFKTCYSC"
     gene            complement(16281..17072)
                     /gene="flgG"
                     /locus_tag="SB143_000070"
     CDS             complement(16281..17072)
                     /gene="flgG"
                     /locus_tag="SB143_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEF9748649.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKGRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGIGVRPTAVTKVFTEGNLKATSTDSLDMAIAGNG
                     FFQIQLPDGTIAYTRNGQFTKDNEGNIVNADGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGTPVAGIATQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(17103..17915)
                     /locus_tag="SB143_000071"
     CDS             complement(17103..17915)
                     /locus_tag="SB143_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEF9748650.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGVPQVSQGYTDFSLGSLKTTNNPLDLAIT
                     REDAFYLVQTKDGEIRLSKDGNFQLNEEGYLVNKQGYRILSSDYFNNPQNAGIRLPNG
                     AVYINVDKNGSIEVDGVQNARLFIAQVDDIRALQKDGDNVYRIDDLTRIRDLDNSNAV
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            complement(18238..19350)
                     /gene="ftsZ"
                     /locus_tag="SB143_000072"
     CDS             complement(18238..19350)
                     /gene="ftsZ"
                     /locus_tag="SB143_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEF9748651.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISNSLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAENGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFKLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     IEISAAANNIEEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDRDSIAKKAAEEAE
                     TPKKNPYLNLRKVSGGFDEEIMAQIETPTFLRRQMD"
     gene            complement(19367..20755)
                     /gene="ftsA"
                     /locus_tag="SB143_000073"
     CDS             complement(19367..20755)
                     /gene="ftsA"
                     /locus_tag="SB143_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEF9748652.1"
                     /translation="MILNILGIDLGSTQTCAIVAQKDEEGLKIIGFAKAKTNGVKKGA
                     ITNIELASKSIEEAVRNAEMMSGVHYDKVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNALIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANSIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENYNRQIRQEIIPQKEVENETKSDFFGENLQENDTIIIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            complement(20752..22239)
                     /locus_tag="SB143_000074"
     CDS             complement(20752..22239)
                     /locus_tag="SB143_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEF9748653.1"
                     /translation="MLTWMQHHKKYLVVTIWISTIAFVGAGFLGWGAYDFNLNRSSSV
                     AVVGDEKINYNEFNVRYNQIFNYYNQISNGGLNEESAKQLGIENAALSSLVEDKLLLN
                     FAKDLGLGSSENEVIQALAETKAFQDPSGDFNKTIYYELLNANNMTPKEYEKTLSNEI
                     IIGKLEQIFNLPQTDEELKMLGASYFMQDSLNIAKLEQDKENIKVNEEELKKLWNEHK
                     EDYKTKKVYEISTYYLPVDMQKIDDSKLEEFYNNENNKFKYKDFSGKIMSFEAAKKDV
                     AKDYALAQLKNIANAKFLELKEGKDKFQKDENITDSDVYYPLEALSRVKNGDVLRPSE
                     YQNGYIIIKLNKTNPVRTKTFDEAKEELMPIYISEQVKKNLEEKAKQNLENFSGTNIG
                     FVSRDTVRNDAKISNILNEAEFSYFLMNVFNSDQNRSYVILNEDKAILYKINKQKLDM
                     NPEKFQQYRTMLNQNLQSLKANEMKQELIEELKKTYPIKIYYKGK"
     gene            22392..23327
                     /gene="rsmH"
                     /locus_tag="SB143_000075"
     CDS             22392..23327
                     /gene="rsmH"
                     /locus_tag="SB143_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEF9748654.1"
                     /translation="MKIPHIPVLLNEVNQAFEKLNSGYFLDCTLGFGGHSESLLKDHP
                     NLKLIACDQDKEALEFSKKRLHDFKDRTEFVLSNFSQILDQISHDKLNDLKGILADIG
                     VSSYQLDNNKRGFNLHSDFLDMRMNQDAKISAFEIINNYTQEQLSDIFKKYGELNDGY
                     FIAQKICQERQKNKIKSAKELYEIIGKTKQNHRSVSKATLVFQAIRIEVNQELEVLKN
                     FLEKLEKIKLKNCILAIICFHSLEDRIVKNYFKKWAKNCICDERAFRCECGNNHSLGE
                     IISKKAITPSKEEIMINSRSSCAKMRLFHFKNMEK"
     gene            23327..24214
                     /locus_tag="SB143_000076"
     CDS             23327..24214
                     /locus_tag="SB143_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748655.1"
                     /translation="MLDDDFLKEKQNIRQKMLKFSRAVNQGKPLDDDLKEEISSDDIL
                     RRRFKKRSNHFLDEIEEDYELEYTKKSNIYLKEDLINVKLEEKQSLAKKIFSKIKEKN
                     KNQESKKKKTKKLFSFLKKKEIQGIQNKNTHNTQEKHLHTDKQIEIKKIQNNKIQPTQ
                     TDPKPDIKQSLENLQKKIQTQEVKIEIEKSEIQPIKTEHDEDTQKVKNVLLEGFSNAT
                     KEDKNLNFNHLLFAVLFVSFALVLFVPQIYIRNQIYYLSREIATLRVEESVLDEENKD
                     LKRRLEIMRFQNQILDYLE"
     gene            complement(24202..24693)
                     /locus_tag="SB143_000077"
     CDS             complement(24202..24693)
                     /locus_tag="SB143_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748656.1"
                     /translation="MKKFKDFSCNFLFKISDQPVLLRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGIFCALVLLPLLLITHYLFTRLDFHISIISAVAVTACVFISYDIFK
                     VYARKMISKKLIQKAWALHFPYFSYEKYSIMAGNFYKEALKEEIPKANLEQYVLEKII
                     HSK"
     gene            complement(24767..25957)
                     /locus_tag="SB143_000078"
     CDS             complement(24767..25957)
                     /locus_tag="SB143_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEF9748657.1"
                     /translation="MKILVLNSGSSSVKFKFFDDKVVKASGLVEKIGEEKSKVILKNA
                     LNDETFERELPIKNHEHGLQIVNELFKESGILEDLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAFVSARAAQLLGKNKEDLNAISAHLGNGASVCAIEGG
                     KSIDTSMGFTPLEGLVMGTRCGDLDPAILPFISHLKGLTIEEIDTLLNKKSGLYGICG
                     SNDFRDIGAKIEQGDDRARLAFDMFCYRLLKYIGAYFTVLPRTDAIIFTGGIGENAAL
                     VRQKVCERLSHLGVELDIELNNKKASCERMISTANSKVKIFIVPTDEELEIARITEEL
                     INKS"
     gene            complement(25971..27476)
                     /gene="pta"
                     /locus_tag="SB143_000079"
     CDS             complement(25971..27476)
                     /gene="pta"
                     /locus_tag="SB143_000079"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEF9748658.1"
                     /translation="MMANLYLMRSRSDELNTLVTTKLLKNYSKIYKNIAIYCPVIYVH
                     RIPVLQGWLEEFDIKQTLKNAYSFTFREAMEEFSKDPHSFFNTILEEYEELNRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINNEDKLIAQKYFDEALDGRDYALINE
                     NFNFEEMHKLQAYDFMTPHRFKYELIKKSVKNKKTVVLPESNDERILKAVEILLKSSV
                     VDLILLGDEQDIKQKADELALDLTAVKILNPLHSEYNEEFATLLYEARKSKGMSLEEA
                     KELVKDRTYFGTLLIHSGKADAMVSGASTTTAETIRPALQIIKTQEGVDSVSGIFFMG
                     LDDKVLAFADCAVNPNPNAEQLATSAYVSAMTAKSFGIEPRIALLSYSSGDSGKGESV
                     DLVKEALRIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGNVNVYIFPDLDAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            27578..28276
                     /gene="flgH"
                     /locus_tag="SB143_000080"
     CDS             27578..28276
                     /gene="flgH"
                     /locus_tag="SB143_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEF9748659.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     TSPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGGSGLLGTAIDKVNAYSNIGFQTNSTNNYQGTGTQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSRYIADAKILYKTEGEVDKSTR
                     KPWGSKVIEAIWPF"
     gene            complement(28360..29433)
                     /gene="ispG"
                     /locus_tag="SB143_000081"
                     /gene_synonym="gcpE"
     CDS             complement(28360..29433)
                     /gene="ispG"
                     /locus_tag="SB143_000081"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEF9748660.1"
                     /translation="MEYKRFKTRQIKVGDVLIGGDAPISVQSMLFTKTRDIEGSLEQL
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVFCAEFIDGVRI
                     NPGNIGSKENIKDVVKACKERGIPIRIGVNHGSIEKEFSDKYGYGVDAMLESALYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTIKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIKVARAILQDSGVQKSGVNIISCPTCGRIQSDLIS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ENELVDRFLAEVEDEVKSREIKE"
     gene            29560..30078
                     /locus_tag="SB143_000082"
     CDS             29560..30078
                     /locus_tag="SB143_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyl-sulfate kinase"
                     /protein_id="HEF9748661.1"
                     /translation="MQFITKGGVIWLTGLAGSGKSCIAEALYQKLKEKYDNIIYLDGD
                     EFRELLGYYKYDKQSRIEVSIKRSKFAHFLSSQNMLVIVSAISMWDEIYRYNRKTLKN
                     YYEIYIKCDIEELKKRDKKRLYSKALSGKISNVVGIDINYDEPNADLILDNSKLDLLD
                     EKVDRILQALNT"
     gene            30113..31516
                     /locus_tag="SB143_000083"
     CDS             30113..31516
                     /locus_tag="SB143_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEF9748662.1"
                     /translation="MEQILKILKQMLSPDQAQILLKALKNSNNENFYNFALENIEIIC
                     EWLNSKEFQENYTNHPYPPLLNPNYIDTDASRHCAELAWDLNLPLPKHYKFIYISPHG
                     VGAAAFLRYLNEACNVFCLASWMLPYDAKERYCINYMCLNDKNISDQAINISELNIIN
                     LEKYLALLDPHSKVICGIRDPIGILKHNWGRDWSKVQRNFQNEFDLTYDYRNYINFLN
                     HKKPEIKINLEELNYSVFIINYLSKYFNQEYIYYLDMEKIKTKNAFQTMEDLAFRFGF
                     TPPCLKESENLFKIQEFRGYIRYLFPITLYANQKDLSNIFSIKSPNNNPNASIDTSTS
                     IAIILDRPHKNSQKINIINEILNNDLSNDMSVYIDKSDLEKLEKNTLFFKQIKNYLYE
                     FLQAIHKTIEHTEDSMMKEEDVLLYFSKNKTLALEFKEIFNKELNNVKQSHPNIIASW
                     KYYQEFEKICKKLDEKE"
     gene            31627..32400
                     /locus_tag="SB143_000084"
     CDS             31627..32400
                     /locus_tag="SB143_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEF9748663.1"
                     /translation="MKQGDFTEVAKHYHNRPAYSPFLLEKLIACINDKNKNIKNLNIV
                     EVGAGTGKLTKMLGEMFECQIDAIEPNDNMREEGRKFTQNLSNISWHQGSGEETRMKD
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IIPELARVSSGTQNVKKWEEILVSTGDFVDCFFMECDYKELWDKDRYLGAWHSVNDIQ
                     AQAGKKRWKEILDMIESKISHMQSIEIPYKIRAWTARKA"
     gene            32455..33216
                     /locus_tag="SB143_000085"
     CDS             32455..33216
                     /locus_tag="SB143_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEF9748664.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKNDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKGEKIEWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALKETHRLLKSEGYFSCMWNHRDLNDPIQKIAEDTIIEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETE
                     EGNELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            33228..35567
                     /locus_tag="SB143_000086"
     CDS             33228..35567
                     /locus_tag="SB143_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748665.1"
                     /translation="MAELNFKTKAQNLKNLQTKLKKAKILPLVLTSLEELILNEEKIL
                     SDIQALKANKLIIRSSSLSEDSMKNSNAGAFLSLANIDANSKDELLKALYKVANSMPS
                     KSDEILIQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNNSITDGSSKSAKTYYH
                     YREHLDFKDIKLQKIIELIKELESLYDCCFLDVEFAFAFKDNKEELFCLQVRPLVMQE
                     KENLFNALPKEALQRFYKRFISLQNLRPRVLGEKALFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYKDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFDIVYSCYDFNSSKKLQELLNHGFNENELKRLEFSL
                     LELTNKIINPQSGLYLKDIKKAYRLKERYDGIIDSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEINFISKEEKNDFLNSLNTVSKNLSKQTNNLNSCTKNQFL
                     IEFGHLRAGTYNILSPRYDENFELYFEINQKDNNVYLEDKAFILPEEKMKALNTLLKE
                     HGLEISACEFFDFLKQSIEGRELLKFEFTRLLSKAIVYIEELGKYYDIKKEDLAHLDI
                     KSILNLYSSLYSINPREQFLEEIARNKKEYKLTQAIKLPSLLCNTEEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            35558..36166
                     /locus_tag="SB143_000087"
     CDS             35558..36166
                     /locus_tag="SB143_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEF9748666.1"
                     /translation="MFIGITQRLICNESYYEERECLAKDWGELFNKDLFKNFIPLPLS
                     YEIDFSRYKDLVKAVILSGGNDLNFLNPNAMSKKRDSYEIQVIEACLKEKIPLLGICR
                     GAQIIAHYFNSCISPYVNHVSKHEIFFLEEKFISNSFHNFAIARLGDELEPLCFAKDK
                     TIEAFKHKYENIFGIMWHIEREDGLNNVQILKEWLDLIKEEK"
     gene            36163..36933
                     /locus_tag="SB143_000088"
     CDS             36163..36933
                     /locus_tag="SB143_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocholine cytidylyltransferase family
                     protein"
                     /protein_id="HEF9748667.1"
                     /translation="MKAIILAAGFGSRLMPLTKNQPKCMVEYKNKKIIDYEIQALKEN
                     NIDEICVVGGYLFDVLRTYINQSYDLVTFYKNENYDKTNMVQTLFCARDFLQKCIEDK
                     QDLIISYADIVYFKNSIEKLKEAKEDFAVIVDKDWKELWEKRFENPLDDAETLKLKDG
                     FIVELGKKAKTYDEIQGQYTGLFKFSYLFLKEVIKTYDSLDKNLTYDGKDFKNMYMTS
                     FLQILIDKYKNAKAVEIKGNWCEIDFMSDLEINPIKNQ"
     gene            complement(36917..38755)
                     /locus_tag="SB143_000089"
     CDS             complement(36917..38755)
                     /locus_tag="SB143_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEF9748668.1"
                     /translation="MRYYELAVFGLYLQNLTFHSKEEIPALREVIIDLKNKKNLRALV
                     LKECQKPEFQTKEIKEITPFSLSHTQFELAKFISYYYTSKLGFVLGLFSTHQTYTCSA
                     TKIENKPELSQKQEEALKFIETHPTSLLFADTGSGKTEIYICLIKQYLEQGKQVLLLM
                     PEISLTPQMQKRLEVYFKDKFFLWHSKISKKKKQENLERFCKGEALLVAGARSALFLP
                     FVNLGLIIVDEEHDNSYKASNQPYINARDLALFLGSKFDIKVLLGSATPSLTSFYKQK
                     SFRLKGTFFESKKHFLYDENELDITPMLLGELKKSLENQKQAIIFLPTRANFRQIVCK
                     DCGQTIKCPFCSIAMSLHKKRNVLKCHYCNYTSLIEQNCPSCQGAMLEARKMGTAELQ
                     ELLQEALPLARIAKFDSDEITSIRKLNAVLKDFNENKIDILIGTSMLAKGHDYHSVDL
                     SVILGLDEYLFRPNFKASEETLALAMQVAGRAGRKGEGRVLLQTKNRNFFERYIEDYD
                     SFLQDELENRKDLYPPFKRLLRIVIEDKEQKQAQNLCQKLVDQISGTLKVEIIGYGAC
                     SIEMLKGQYRFYILLRSDFYKVLIKIQEYALNFKNVSVDIDPIDFL"
     gene            complement(38752..39198)
                     /locus_tag="SB143_000090"
     CDS             complement(38752..39198)
                     /locus_tag="SB143_000090"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEF9748669.1"
                     /translation="MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDY
                     EMLNSALSLMRTQVELKQISSFSPNLDEAKINTQKEKLFYCQTSQNCTYSLLHTPIYS
                     SFNAWMKTAPNRYRFFLNAKEWVDFFYNANFAILECLSEKYCKELL"
     gene            complement(39195..39440)
                     /locus_tag="SB143_000091"
     CDS             complement(39195..39440)
                     /locus_tag="SB143_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748670.1"
                     /translation="MASDNLKQVIINVSAKDFIVKCSGEFANFLEDDIALISGGTKKI
                     ELKRFVDAFVKKSYENYILERELKKLIKAINEELPVK"
     gene            complement(39430..39660)
                     /locus_tag="SB143_000092"
     CDS             complement(39430..39660)
                     /locus_tag="SB143_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748671.1"
                     /translation="MFDEKIINTMSDKVNELIEKYNEVCEANENLRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIFKKIEAVLGK"
     gene            39815..41788
                     /gene="uvrB"
                     /locus_tag="SB143_000093"
     CDS             39815..41788
                     /gene="uvrB"
                     /locus_tag="SB143_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEF9748672.1"
                     /translation="MLELTSDFKPSPDQKQAIQGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKVKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKNRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKLEKMPANERAKI
                     IKELRKQMLEAAKALEFEKAAALRDEINKLKDL"
     gene            complement(41823..43247)
                     /locus_tag="SB143_000094"
     CDS             complement(41823..43247)
                     /locus_tag="SB143_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEF9748673.1"
                     /translation="MDFLTSLDESIQFLIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNAEHKLAGFDGYINLLQITIPSTLFGVLCVGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVQLPKSNWIAMWIFLGAIALVALLGIFDSLRPNWGQV
                     VKNGIPQVDALGNPKMDILSMVSVIQMFMLLAGSLIIIFTKTDVKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKKALGDVVVDYPWTYAIMLLLISKFVNSQAAAIAA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVISSCVAGYFLALAAGYL"
     gene            complement(43435..44685)
                     /locus_tag="SB143_000095"
     CDS             complement(43435..44685)
                     /locus_tag="SB143_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEF9748674.1"
                     /translation="MLRQKTTQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEENP
                     FLSVQEPIQTHEHNKNYFDSFYKRNANSAFVDNKGLATKSVYELLNEQIIPPLFPTSK
                     SQELAGKIVECLNHEGYFEYDEEILKDYDINELERIRARFKFLDPVGVGAKDYKEAFL
                     FALENIELDAELYDFCKMLIQDFENIQNYTKEPLYKEALAIFKRFSIPPFLEYFEDSR
                     VIIPDIFVYRENNEIKVKINDDYYPEISIETDGLTHEYLNHYIKEAKNLVDALMMRKA
                     TLYKIGLMIVEYQYDFFMGKDIKPMTFKDLALDLERNASTISRAVANKYLSCDRGLIP
                     LRDFFAFALDEEGETSNVGVKDFVANLVKNENRSKPLSDSKILELIKKEFKVDIGRRT
                     ITKYRKHLNIPSSTDRKKLYELEG"
     gene            complement(44685..45413)
                     /gene="lptB"
                     /locus_tag="SB143_000096"
     CDS             complement(44685..45413)
                     /gene="lptB"
                     /locus_tag="SB143_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEF9748675.1"
                     /translation="MSKLEIVNLEKIIKKTKIIQGISLELNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDITKEPLNKRARLGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHEKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQSLINELKKLDIGILITDHNVRETLAICDRAYVIRSGSLLASG
                     NAEEIANNKDVKKYYLGAEFKLLD"
     gene            complement(45406..45813)
                     /gene="tsaE"
                     /locus_tag="SB143_000097"
     CDS             complement(45406..45813)
                     /gene="tsaE"
                     /locus_tag="SB143_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEF9748676.1"
                     /translation="MKEFILAKNELNTMLQTLPKQGVVLLQGELASGKTSLVQAWVSF
                     LNLDEKVDSPTFSIMQKYENQDICIYHYDIYQEGLEGLLKNGLFENFFEEGLHLVEWG
                     DENLKKALLKLGIPSLEIKISVEDDKRKYVIHE"
     gene            complement(45810..46055)
                     /locus_tag="SB143_000098"
     CDS             complement(45810..46055)
                     /locus_tag="SB143_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEF9748677.1"
                     /translation="MRVDKFLNAVNITKRRAISEDMCRSGVVGINGVIVKASKEVKVG
                     DIISLHFTDYTQEYKVLALPTTKNIPKNAQSEYVVKL"
     gene            46195..47415
                     /locus_tag="SB143_000099"
     CDS             46195..47415
                     /locus_tag="SB143_000099"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEF9748678.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYKCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENVFIKDLREEFVKDYVFPMFRANTIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKEAP
                     NESEIIELDFQKGDLVAINGEHLSPAGLLSKLNELGAKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRAIESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQKHANGRVKLELYKGNVMVIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            47431..47874
                     /locus_tag="SB143_000100"
     CDS             47431..47874
                     /locus_tag="SB143_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEF9748679.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFELASLEKLKEELSKVTLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQTHIEIDKKSLECDTLKSLGTHEVSVKLGHAIHAKFNINIKAE"
     gene            47874..48416
                     /gene="hslV"
                     /locus_tag="SB143_000101"
     CDS             47874..48416
                     /gene="hslV"
                     /locus_tag="SB143_000101"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEF9748680.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHANLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            48413..>48594
                     /locus_tag="SB143_000102"
     CDS             48413..>48594
                     /locus_tag="SB143_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HEF9748681.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVG"
BASE COUNT        16752 a         8323 c         6886 g        16633 t
ORIGIN      
        1 aaagaataag cgaccaaact acccgcagct gaaccccttc caggacctac aggaattcct
       61 ttatctttag ccactttgat aaaatcatga acgattagca tatagcctga aaatttcatt
      121 ttttttatga tattgatttc gacttcgagc cttgttttat attcttcatg tttgcttata
      181 tcaacaaatt ttagcctttc ctcaagtcct tttttgcaaa gctcatcaaa aaccacatca
      241 tcattatcaa aactaaattc tttgccctct tcgggcaagc ttatattata ttcttttgca
      301 tattctcttg tgaatttaaa atttggcgga gtgggatttc ctaaatttag ctctaaatta
      361 catttattag caatttcttg agtattttca atagcttcag gtatatcagc aaaaagctcg
      421 ctcatttgcg ctggagattt gacataaaat tcatgaacac tatggcgtaa acgatcagga
      481 tcattcagct ttttgcccat agcaatacac ataaatactt catgggcagc cgctctttcc
      541 ttaaaagtat aatgggtatc atttgtagca ataattttaa tattcaattc ttttgagagt
      601 cttataatat catcgtctat ggctctttga tctcctatac catgacgcat aatttcaaaa
      661 taaaaatcat cgccaaaaac ttttttatac cataaagccg cttccttagc cgcttcataa
      721 cccttggctc caaaacgaac atttctttca ctatgaatat ttaaatgcca atttacctca
      781 ccttgcaagc aagccgaaga acagataagc ccttcgctat gctcttccaa aagcttttta
      841 ttgatacgtg gataataata taaacccttg atatagcttt gagaacttag atacattaaa
      901 ttttgataac caacctcatt ttttgcatat aagcaaagat gaaatctttg acgcgagctt
      961 ttatctgaaa tatcttcatg attatgcaaa tacgcttcaa gacctatgat gggttttaat
     1021 ccctcagaac gcatagtctg ataaaaatca attgctccaa acatattacc atgatctgtc
     1081 atggctacac ttgtagcacc ctgctcttta agggttttag ctaattcctt aagcttattg
     1141 gctccatcaa gtaaagaata ttctgtatgc aaatgaagat gggtaaattg gctcatcgtc
     1201 ttccttgaaa atataaatac taaagatttt gataaaaatt ataaattttt attgctgaat
     1261 ttgaaagaat ttatcactaa aaattacctg aaatttatca tgataatttt atcaccatca
     1321 gcaaatatat tttaaaaaat aaaatggtaa aagtttttaa gattgaaaga atgaatcatc
     1381 tttcaagaga taaaatcaca aaatttgttc atattctttg ccaatataaa tttggttatc
     1441 cttttctata acagggcgtt taatacaact tggattttct aaaataatat ttttcaactc
     1501 aagctcgctt aagctctcta tcttgtcttt attcaaacca agtttttttg aagtagtgcc
     1561 tgcagtattg ataatttcac taaatctttt atatttaagc cagttttcaa gcacgcccaa
     1621 atcaatcttt ttaatatcaa taaaatcaaa ttctagagct tttttatcta aaaactctag
     1681 agcttttttt acggaattac agtttttaat cccatagact ttcattttct tgccttttta
     1741 accaaatcag caatcaaaaa cgcaagctca agtgcctgat ctgcattaag tcttggatca
     1801 cactgtgtct catagcgttt ttctaaactt tgcgcagtaa cattactcgc accacccgta
     1861 cattcggtta catcctgtcc tgtcatttca agatgaactc cacctgcata tacaccttcg
     1921 ctcatagcta tttcaaagaa atatcttact tcttgcatga ttttatcaaa ttcacgcgtt
     1981 ttaaaatccc ctgcttttac cgtattacca tgcataggat ctatactata aactaaattt
     2041 aatccctctt ttttaagttt agagaaaatt ttaggcaatt gagttgctat tttttcagca
     2101 cccattctaa tgatgatatt taatctaccc tcttcattgt ttggatttaa agcattagct
     2161 aaagcgatca catcatcagc acttgcattt gggcctattt ttactcctaa aggatttcta
     2221 actccactta aaaagtgtac atgagcttca tcaagacccc tagttctctc acctatccaa
     2281 agcatatgag ctgaacaatc ataaatttcg ccacttaagc tatccactct agttaaagct
     2341 tcctcgtaag gcaaaagcaa agcttcatga gaagtataga catcaacttc ttttaagctt
     2401 ggagtattat aggtattaat accacaggcc tccataaaat ctaaggcctg agaaattttc
     2461 tcactgatat cggtgtattg ttgatgcagc tcgctttttt tcaaaaaacc taaattccat
     2521 cgatgcacct cgtgtaaatt agctaatccc cctttagcaa aaccgcgcaa taaatttaaa
     2581 gtagtagcac tttgatagta agcttcaagc attctatttg gatcaggaat tctagctttt
     2641 tcattaaatt caaagccatt aatgatatca cctctataac ttggaagctt tactccattt
     2701 atctcttcat aatcgctact tcttggttta gcaaactgcc ccgccatacg accaatttta
     2761 acaacgggac aaccacccgc aaaagttaaa actatagcca tttgaagtaa aattttaaac
     2821 atatctcgta tatttactgc tccaaaattt gcaaaacttt ctgcacaatc tccaccctga
     2881 agtaaaaaag cttcttttcg gcatactctt gctaaagcac tttgaagctc tcttacttca
     2941 cctgcaaaaa ccaaaggagg aagtttttca agtttattta agactttatt tagctcctct
     3001 tgattaaaat aaataggctg ctgcttaata gaaaaatttt tccaagaatt tttagtccaa
     3061 gtcatcgtta tttcctaaag atataatttt aacttcccct ataagttgag taaccaaaag
     3121 gagataaggt aataggtata tgataatgtt tttgatcttt taaaagttca aaacttactt
     3181 ctacaaaggg gtaaaaacta tcaactttat gtgatatata ataatctttg gtataaaatt
     3241 tgagtttata aactccaaaa gaacgatttt ctgttttttc atagggaaga aaatctgcta
     3301 tcctaccatt cttttttgta aatttttcac ttatcttgac ccattgtcga ttttgatcca
     3361 agttataaag ctctactttt acattagatg caggttggcc agagttaatg tctaaaatat
     3421 gggtacttaa ctgatattca gttgcattta gaaatattgg tatgcttatg agagccaata
     3481 aaattttttt tgtagaaagc atatttttct cccttaataa tattttatat atctaaatca
     3541 taacaaaata ttattaacaa taataactaa ataataaatt ttataaatta gttaaaatat
     3601 atttatttaa aaaacagaaa gatgctaaat ctgcaaaata ataattttgc agattatttt
     3661 ttaagttctt taatacgtgc tgctttaccg cgtctatctc taagatagaa caatctagca
     3721 cgacgaacac gaccttttct tacaacagta atactctcta aactttcgct ataaattgga
     3781 aaaattcttt ctacgccaac attattagca cccattttgc gaacgataaa ggtttcatct
     3841 acaccattac ctcttctagc tatacaaatt ccttcaaaat tttgaattct agttttatcg
     3901 ccctctttga tgcgaattgc aagtcttaaa gtatcgccag cacgaaattc tggaacattt
     3961 tttccctcaa tttgttttgc ttcaaattgt tctatgtatt tatttttcat aaaaaattcc
     4021 ttattttttg cgttcatgct ctaaaaataa atctggacga aaaaatttcg ttttgcaaga
     4081 cgctaaagta gtttttaaag tcgcaatttt agcgtgatta ccctttaaaa actctgaagg
     4141 agtataaaat ttcttaaaat tttgttcaaa aataaaaggt tttgcaaatg aaggagcttc
     4201 taataaatca ttttcgaaac tttcctcttc caggctgcaa gcattaccca aaactccatt
     4261 gatatttctt gcaatagcat cacaaagagt aagcgctgga agttctccgc ccgttaaaat
     4321 aaaatctcct atgctaaaca cttcattagc aaaaatttct attactcttt catcaatgcc
     4381 ttcatatctc ccacaaacaa aaacaatatt ttctttcttg cttaatcttt ttgcatcttt
     4441 ttgattgaaa gtttttccac ttggatttag aaaaataaaa taaggatctt tttcactatc
     4501 tttgataaat tttaaagtgt tataaagagg tttaatttgc attaacaaac cagctccacc
     4561 gccaatttta taatcatcta ctttatgata aatattatct gtaaaatctc ttgggtttaa
     4621 aaagtcgagt tgaaaaagct ctttttgaat tgctcgggca agaatagaat ctttaaaata
     4681 aaattcaagc aaattgggaa ataaagaaac aaaactaaac ttcatgaatt ttctaagatt
     4741 aaaaaagcat ctttggtgca aaaaatagaa tatttttcta tatcaatttt attgacatat
     4801 ttatcaatat agggaataaa aaaagtttta gcataagctt tatcaattaa ctcttgatcg
     4861 ctttgaattt caaataaata agaatctcct acttcaagaa tatccaccac tttccccaac
     4921 cttcgctcat catcgaatac ttcgcatttt aaaatatcaa aataaaaaaa ttcatccttt
     4981 ttcaatatgc aagtttgtct tgtagcttca atactttgat aaagaattag attaataagc
     5041 tgttttgcag cttcaacatt ctcataacct tcaaacaaaa cagaagagtt agctaaattg
     5101 tagtgtttaa ttttcaactg acttttgcca ttttcagtga aaaaagaagc tcctttttta
     5161 aattgctgga taaagtcact taggttgtaa agttttaaat accctttaag tccaacagtt
     5221 tttccaagtt tggcaacttg aataaaattt ctttcactca agtgctttaa ccgttacacg
     5281 ataactcatt gaatctttgc ttttacaagc tgagacaact gtttttattg cattgatcat
     5341 ttttccattt ttgccgataa gcttaccggt atcaatttta tcagcataaa gtatgatttc
     5401 agcaaaattt tcatcaagct ttattttttc tgttgcaatt ttatccggat aatctgctat
     5461 gagtttagcg tattctctta aaaaattttc taccatgaaa tttatttact agtaatagaa
     5521 gctactttat cactaagttt tgcaccaacg cttttccaat aagctagacg ctcagagtca
     5581 aattttacca cttcaggctc aaccatagga ttataatatc caatgctttc tatccatccg
     5641 ccatcacgac gttttctact atctgttact actatacgat aaaatggtct tttagttctt
     5701 cccattcttg taagtctaat tactgtcata tacactcctt aaaaataaaa attttttaac
     5761 tatagatact attaaaagta tttatagata aaaaatctaa aattgtcttc tagcttgatt
     5821 catcatttgc attaaactat ccataccctt ttttcctgaa aatctcttag caagtttagc
     5881 agcatttgca aattgtttta aaaagcgatt aacttcaact tgagacaatc cagcgccttc
     5941 tgctatacga cgctttctag cattattaag taaatctgga ttttctcttt cttttggcgt
     6001 catagatgaa atcatggctt taatatgtat aatttcttta gaattatcca aatcaagatc
     6061 ttttacactt gaagcaacat tagaaagtcc aggtatcatt cctataatag acttcatact
     6121 acccaatttt ttaacacttt ccatttgagt taaaaaatca ttgaaattaa actcgccttt
     6181 tttgattttt tgatttaatt tcttagcctc tttttcatcg ataatggccg cagttttttc
     6241 agctaaagtt gccaaatcgc cttcacccat tatacgatta actattcttt caggaataaa
     6301 aatttctaaa tccgctatct tttcacccac gcctacaaat cttaaaggga ttccaatttg
     6361 cttcgtaata cctaaagcta tacccccttt ggtatctgca tcaaatttag ataaaataac
     6421 tcctgtaata cccaaaagct cattgaaact tgaggctgtt ttaacaccat cttgtccact
     6481 catagcatca gcgacataga aaatttcatc tggatttaaa acatttttta ccgcttttaa
     6541 ttcattcatt aaagcctcat caatagccaa tcttcctgca gtatcgacta gcaatacatc
     6601 tgccatagaa ttttttgctt tttctaaagc ttgttgtgcc actttaatcg gatctttttc
     6661 attttcgata taaaaaagat ctaactcatt agcttcacaa agctgtttaa gttgctctac
     6721 tgcagccaaa cgctgtaaat cacaagcagc tattaaaact tttttattgc gaagttttag
     6781 atagttggca agcttaaccg tacttgtggt tttacctcca ccttgtagac ccaccattaa
     6841 aacaacagtt ggaggcttag tagcaaaaac aaaaccttga ttttttccat cagcattcaa
     6901 aatattttct aaattggttt taatagcttc taaaaattgc ttttgtccta tgccattttt
     6961 tttaacatct tcttcaataa gcaaaagcaa atctttaacc actttatggt gtacatctgc
     7021 ttttagtaag gcttttttta aggtatctaa agcattttta agcgcttttt catcatcaac
     7081 aaaacgaagt ttattaatcg ctgatttaaa agattcgctg actaattcaa acactttatt
     7141 acctttctat tatttttaaa ttttaagttg agtattatac aaaatctttt cttaaatggc
     7201 tttaaaaatc taaatttttt atctcaaaac caagctttga aaagctagaa tctaattctg
     7261 ccttaaattg ataatttaaa attcgaattt catgactatg caaatacatc ctatcacttg
     7321 aaattttagc atatttttca tctcctataa ttccatgctt gataaattta gcatgcactc
     7381 ttatttgatg ggttctgcct gttttaatga taattttagc caaagttttt ttagcttgca
     7441 tcataatagg agtaaaaata ctgaccgcgc ttaaaccctc tttagaaatt ttgctcaaag
     7501 ctccattctt agtttttatg gttaatatag gctcatcaat ctcaatttct tctgctaaaa
     7561 ttccatccaa aacagctata tagcttttat aaactctttg ttttttaaac tcttcaatgc
     7621 atatttttcg aaaatcttca tttttacaaa gcagtataac accactagtt tctttatcaa
     7681 gacggttaag taactttgca ttgaattttt tttcaagttc ttcactgata taagcatagg
     7741 gtttatttat ggctatgata ttttcatctt caaaaattac tttaggcttg ctagttttta
     7801 caatgctaaa tttcgtctta tcactcatca aagctcttgc tacaactacc tttttaccat
     7861 gagaaaaaac gcaaccctta tctatcaaat cttttgcttc gcggtttgaa atattttctt
     7921 gcaaagctaa aagtttatat gctttttctt gcatcaatac cttcctgtat agcttgtatt
     7981 atggttgata aatcattatt ttgtgctatt tttgctttta aattgtaatt atgaattata
     8041 ccatcaagtt cttttaagtc ttcacaaaaa tagacattat ccacttcttg aaataaactt
     8101 ttttgattat gtatataaat cccacttatc aatacattat taaaatgagc cacctctatg
     8161 ggattatgtc ctcctatccc ctcaaaaaaa gaacctccca gtacaactac atctgaaatg
     8221 gcgtaaaaat ttacaagctc acccaaacaa tctaataata aaatatcttg attaaatttt
     8281 ttatcttcat tttgcaataa actaaattta tcaaatttta aacctttatc gtgcaataat
     8341 tgttccactt ctaaaaaacg ctcaggatgc cttggagcga tgattaattt ctcttgttta
     8401 tccattttat aatgcttgag taaaagttct tcttcaccct tatgagtgct tgcaaaaata
     8461 atcaattttt gcttaggttt aaggtatttt tgtgtaggaa atatttgcaa tttggattta
     8521 atatttgaaa aaattttaac atttttagca cccaaatctt ctaatcttat tttatccacc
     8581 tcactttgtg caaaaacttc atctatataa caaaaaattt tcttataaaa aaatctaaat
     8641 tttttatagc ttgcatatga attatctgaa attctagcat ttagcaaaat aaccttactt
     8701 ttttgaagct ttgctataaa aacgagcatt aaccaatact cggcttcaaa aatcactaat
     8761 accttgctag gtttgagcca aaatggaatc caattttcaa aagcaagata atttacctta
     8821 ttgcaaattt ctttagcata atcataaccc gtctgtgtaa tagtcgtaat tcttgaatca
     8881 aatcttaaaa caagctcttt gacacttctt gcttctccat atgagcaaac atgaaaatgc
     8941 acatccgatc ttttttgaga tatattacga aagagaaaaa atctagcctt taagctatat
     9001 ttatattttg gcttaaataa agaaagtaaa aaaagtggga tagcgcagag taaaaaagct
     9061 atccacacta aaatataata aagaaaaatc aattttgatc ttcttgctct ttatataaaa
     9121 ttcttccaca atgaggacaa gttataatct cttcaccctt aatcactgat aaataagttt
     9181 tatcataaat tttcataaag cagccataac aagcctgttt tttaacggga actacggctg
     9241 tatttttagc ccattttcta atcttttcat aaaagcttaa aactttttga ttcatctctg
     9301 caactaattt agtcttttta gtataaacat tcattctttc tttctccaag ccatccattt
     9361 gagaactaat gcttactctt atttcatcta aattttgctc ctcttttgct ctttcttcca
     9421 aaagttcttt tttgaaaagc tctttatttt ctaaaatttt atccaaacga acaatctcat
     9481 cattagccgc atcaagctgc tctttagcga tatcttcttc gatttttaaa gcatttgctt
     9541 ctttttctgt cttaacagct ccactctttt tagaaagctc tttgatttta gctgaaaact
     9601 ctgaaatatg agcattattt tgaacttttt gattttctac atcttgaatt tcattttcta
     9661 aattatttaa ctcaacatta aatttagcaa tcttattttc agcatctttt aaagtcttgc
     9721 taatactttc catcttcggt tcaaagctgt caatttcttg atctattttt gataaaagca
     9781 ctaattgttc gagatattta ttcatttatt ttccttaaaa atattgaaat ggattttttg
     9841 aaactgttat tataactttt agcggcaaat ttttcaagtg ttttgctaaa cattgagcaa
     9901 aatagcgttc gctctcaaaa tgtcctaaat caatcaaatt tagatgattg cttatggctt
     9961 ctaaggcttg atggtattta aaatcgccac ttaaatagca atctgcctta acttcattta
    10021 acaaatctcc cccactccct gtgcaaacag ctaagcgttt caaatattct tttccacaaa
    10081 aacttgttct tagaatttct aaatttaaac gctttttaac cacaatacaa agctcttcaa
    10141 aactcatatc tacatctata taagctaaaa atttattttt agaagaaatt tcaaatccca
    10201 aaatttcttc tataaaataa gtatttaaat ggctaatatc aaaattagta tgcatagaaa
    10261 ttaaagaaag attttttcta agcatttcct taacaaaagc tctaggatag gctgaatttg
    10321 ccaaatcctt caagccttta aaaattaaag gatgatgcgt gataaataag gaattttctt
    10381 ctgcattttg gatcaactgc tcatctatat caaggcttag ataaacatta tgaatttcat
    10441 cgttaaaatt cccaagtaaa agaccgctat tatcccaaat ttcttgagtt tcaaaagggc
    10501 ttagcttgtc taaaaaatta taaatttcaa tcagtttcat ctaaattttt cttataaatt
    10561 tcagcacaag ttttcgaaag ctcgcgaatt tttagcatat aatcttgtct ttgtgcaaca
    10621 gaaatagcac cccttgcatc aagcaagtta aaagtatgag ctgcaagcat acaataatca
    10681 taagcaggca aagccaatcc ctgttctaaa atacttttac attctttata agtatcttca
    10741 aattgctgat ttaaaaaatc tacattgctg atttcaaaat tatatttact aaattcatac
    10801 tcgctgcgct tatgcacatc tgcgtattta attttttccc cattaaattc gctccaaaca
    10861 atatcataaa cattatctac attttggaga tacatagcaa ttctttcaag cccataagtg
    10921 atttcagcac ttaccaaatc tactgcgatt ccaccaactt gttgaaaata ggtaaattga
    10981 gttacttcca taccatcaag ccaaacttcc caaccaagac cccaagcgcc aagacttgga
    11041 ctctcccaat tgtcttcaac aaaacgcaca tcatggcttt taagatcaaa acctaaattt
    11101 tcaaggcttt ttaaataaag ctcttgaata ttatcaggac ttggcttcat taggacttga
    11161 aattgataat aagccccaag acgattagga ttttctccat atcttccatc tgttggacga
    11221 cgagaaggag ccacataagc tgtagcccaa ggttttttac ctagacttct taaaaaagtt
    11281 gctggatgga aagttccagc tcctgctggc atatcgtaag gctgcatgat tgcacaacct
    11341 tgtttttgcc aaaactcttg taaatttaat atcatctgag aaaaagtcat tttaaccttc
    11401 tttattttca tttaattttt catttgctgt actagaattt tcatcttttt tcatttccaa
    11461 atcaggctca gttcttgccc caaaaatttc agccgtctta ctccacataa gcttatattt
    11521 acgttttaaa aattctattt cttctcgggc gtgttttaat tcatgattta aagtttcaat
    11581 agtttttcta tcttcatcat aaagctcttg cattgaataa agtgcatctt ttaaaaattt
    11641 attttcattt tttaaagcat caagagtttc atcctttgca tctaaaacct tctcatgcaa
    11701 atttaaaatt gttcctatag tcttttctac aaagctttct cctgccaaag tcatagaatt
    11761 taccatagca ggctttgagt tagaagcact tggaacaacg ctaaaagttc cttggtttgc
    11821 ttcgatataa atttttccct cttcttcttt gaaatttaaa gcaccatttg ccatcattcc
    11881 ctttacaaca tcttcattta aatgcacaag tttacaaaat tcttggagct ctaaataagt
    11941 ttgcattttc atcctttttt acaataaaac ttctacactc ttagaatcac tgattaagtt
    12001 ttcttcttga ttttttctat cttgctttaa agcttttgct aaagtttcat cattaagagc
    12061 aagaatttgc atagctaaat aagctgcatt tttagctcct gctttgccaa ctgctaaagt
    12121 tcccacagga attccacctg gcatttgcac ggttgaaaat aaagaatcca tactcgctaa
    12181 agcacttcca ggcataggta ctcccaaaac aggtttggtt gtataagctg caactgctcc
    12241 tgctaaatgc gctgccatcc cagcagctgc gataaaaact ttagctcctt tttcttctgc
    12301 ttctttaata tattcctgag ttcgctttgg actacggtga gcagaactga taatgagttc
    12361 atattttaca ccaaattttt caagcgtttt ggcacattcg ctcatgattt cataatcact
    12421 cttgcttccc atcataattg atacaaattt catccaattt cctttcttaa aaaactaaaa
    12481 ctgctgattt tatttggcat tttgatttcg ttttcgtttc cgctatgaat ttcgttgaat
    12541 tctttattgt ttttagaaat aagtttttta aattctacaa aatatttatc ttctttttta
    12601 taaatcttac ccaatttatt atcacaagtc tcaatttcat cacctaaagg cattaaaatt
    12661 tcataagctt tgtttaaaac aaccttgccc ttgcatttaa aatactctcc atcctcaacg
    12721 atagcatgta cttgatgagt accctcttct atgctcgtat cgtgattttg tgtatctgct
    12781 ttttctaaag ggcgtgagac aagataaccg tctgtaaaac cgcgattttt aagcgtagca
    12841 atttcttttt catacttact tgcctcaaat ttaccttcta aaacatcttg tatggccatt
    12901 ttgtaagttc tagttgtaag tgcaacataa tactcacttt tagtacggcc ctctatttta
    12961 aatgcgctta tgcaatcttc tttcataatt ttttctatgt aagagcataa atttaagtct
    13021 ttagagttaa atacatgggt accattttca tcttcttcta aacgaaaaag tactccattt
    13081 tcaggatttt ttgcataaag ttcgtaatta aatctacaat cattagcaca agagccacga
    13141 ttactcattc ttccgctttg aaccgagctg atcaaacagc gacccgagta agcaaaacac
    13201 atcgatccat gcacaaaagc ttctagctca atatcgcaat tttcttttaa acttttagca
    13261 tctttaagac tcaactctct tgcgataact actcgttttg cacccatatt tttataaact
    13321 cttgcgtcaa gatagtttaa aacattagct tgagtagata catgcaaggc tatttcagga
    13381 gctaactctc gaaccaaagc cattgcaccc actgaagcta ctataaaagc atcgggtttc
    13441 atctctttaa gctttaaaat atgttttttt aaagattcta tttgtccacc caagtgaaaa
    13501 ccatttaaag taacataaac ctttttgcct ctttggtggg tatactcaat agcttcttca
    13561 aaactctcat aattaaattc tctagcagtg cgagagcgca aagaaaaatt atttacccct
    13621 gcgtaaactg catcagctcc ataagctaaa gcgattttta attttgcaaa atttcccgca
    13681 ggagctacaa tctctggaat aatcattttt gacccaaact tgctataagc gcttctatat
    13741 catcattgct tacaatatca gtagtagaat caccttcaat atgaactgca gaactcactc
    13801 gtttcttatc atcaatccta ccttcaaaca aagaactcat atagcgactc aaggcacgca
    13861 ttacattgat aacgcgctct attttttgac ggtgaatatc ttgatattgc atagcatcca
    13921 ttgccatcat tacttcatct tgtccacatt gcaacttatc aataatttct tgacttgttt
    13981 ttttcacttt tgaatttaac tgcaaagctt cattaaaact gacaacattt ggaaatttct
    14041 catttagttt tgaaaatatt tcaatatttt tagctaatac tttatcaatc tcactaaaca
    14101 aattttcaga atctgcaaag aaattattga tactttctag cttatccatc atctcagtag
    14161 cttttaactc actgtcttta gtaacatcat caagttgatg aactacctta tgttcttgat
    14221 ttggtggtgg tggtggccat acaacactag gatctggttt ataatcagac acctttacat
    14281 cttctagcat taatccttct tcagattcta tattgtgaga ctctgtttcg cttttaatgt
    14341 tagactctgc atcctcatca aaatttacat caccattcat caaggcgtca agttcttctt
    14401 gagtcatctt tttccttttt taaacctaga ttttgtttta gtactacgat tataatcaaa
    14461 tttatctaaa atgaaaatat aaatttaaat tttcatagtt ttgtaagtaa atttcaaaaa
    14521 atgattaaaa aaatatatta attaaacctg aattaaaaaa aatatgatac aattttcata
    14581 aattatctta aagaaggagt aaaagatggg caaatttgtt aacaatgtta atgaattctt
    14641 tgatttttgt aaacaaaacg aagttctttt tgtagatttt cgctttactg atatgatagg
    14701 aacttggcat catatcacct ataatcttca tgcaattagc gaagaaactt ttgaagcagg
    14761 aattccattt gatggtagtt caattcatgg atggcaacct attgaaaaat cagatatgat
    14821 tttaaaacct gatgcgcaaa gtgcattttt agatcctttt acagctgatt ctactattat
    14881 agttttttgc gatgtttatg acatttataa aggacaaatg tatgaaaaat gtccaagaag
    14941 tatagcaaaa aaagcaatgg aacatcttaa aaatagtggc atagctgata ctgcttattt
    15001 tgggcctgaa aatgaatttt ttgtttttga cagtgtaaaa attgtagata caactcattg
    15061 ttctaaatat gaagtggata cagaagaagg agagtggaat gatgataaag atttcgcaga
    15121 tagctacaat acaggtcatc gtccacgaaa caaaggcgga tattttcctg ttcaacctat
    15181 agattctttg gtagatattc gctctgaaat ggttcaaact cttgaaaaag taggacttaa
    15241 aacctttgtt caccatcacg aagttgcaca agggcaagcg gaaattggag taaattttgg
    15301 cacacttgtg gaggctgcag ataatgtaca aatctacaaa tatattgtca aaatggtagc
    15361 tcatttaaat ggcaaaactg caacttttat gccaaagcct ctttatggtg acaatggaaa
    15421 tggtatgcat gttcatatga gtctatggaa agatggtgtg aatttattct atgacaaaga
    15481 aggttatgga ggacttagcc aaactgctat taattacata ggtggggttt taaaaaatgc
    15541 tcgttctgtt gcagctttta ctaatccaag ctcaaattca tacaaaagaa tagttccagg
    15601 ttttgaagct ccttgtattt taacttattc ttgccaaaat agaagtgcaa gttgtcgcgt
    15661 gccttatggt ataggtaaga attcagctcg tgttgaaatt cgtttccctg atagcaccgc
    15721 taatccttat ctagcttttg ttagtctttt aatggcagga cttgatggaa tcaaaaacaa
    15781 aaccattcct gtaggaccta tggatgaaaa cttatttgat cttactttag atgaaattcg
    15841 tgaaaaaggc atagagcaac taccacacac tctaagagga agtcttgaag ctttaattcg
    15901 ttacaacgct ttcttaaaac ctgtaatgag cgatattttt atagatgatt atcaacattt
    15961 gaaatttgaa actcaagttt ggcctgttga agcgcgtcca actgcatacg aatttaaaac
    16021 ttgctattct tgctaaataa aaagcaaagc gtaaattttt aaacgctttg ctttatttat
    16081 tgataaattt cttaaatcca tatctttgat attatataaa tttattttca aaaaagaatt
    16141 aaaaattatt attgcagcag aatattattt attttcattg tttataccat gattttagta
    16201 agtatatgaa attttaagtg aattaatatg agaaaaattt atggcataaa aataccataa
    16261 atttatataa ttaatttaaa ttatcttttt aattgattga caattccaag catatcatca
    16321 ctcgtcgtga tagcttttga acctgcttcg taagctcttt gtcctgtgat aagatctgtc
    16381 atctcttcaa caagctgcac gttgcttaac tctataaagc catgtcttat tgttccaagt
    16441 ccatcttggg ttgctatacc tgctacaggt gtaccgcttg cccctgtttc aagataaaga
    16501 ttatctccca tagaatgaag tccagctggg ttgataaatt gtacaagctc aacttgaccg
    16561 atttgtgttt cttgttgttc tcctggaagc attacagaaa ctgtgccatc agtagccaca
    16621 ttaatcgcag ttgcaccctc tggtatagtc atttcaggta aaagtctata accatctgca
    16681 ttaacgatat ttccctcatt atcttttgta aattgtccat ttcttgtata agctatcgtg
    16741 ccatcaggaa gttgaatttg aaaaaaacca tttcccgcaa ttgccatatc aagactatct
    16801 gtgcttgtag cctttaaatt accttcagta aaaacctttg tcactgctgt tggacgcaca
    16861 ccaataccca cttctatgcc cgatggagaa agtgttgtgg ctgaagttga agttcctgcg
    16921 tatttcataa cttgatacat tagatcagca aattcagcac gacccttttt aaaacctgct
    16981 gtgttaacat ttgcaatatt gtttgaagta acatcaattt gtgtttgctg cgctaccatt
    17041 cccgtagcag cagtatgaag tgatctcatc attttttatc ctttaattta ttttatatta
    17101 ttttatttaa cggctgcaag tttattgata gcttcttggt ttaagtcatc catatgagct
    17161 gtcataactt tttgatacat ttctaccatt ctatttgcct ctataagtcc taccatttcg
    17221 gttactggat tgacattaga gccttgagaa aaaccttgac gcactgcatt agaattatcc
    17281 aaatctctaa tacgcgttaa atcatctatc ctataaacat tatccccatc tttttgcaaa
    17341 gctcttatat catctacttg agcgataaat aatctcgcat tttgaacgcc atctacctca
    17401 atacttccgt ttttatctac attgatataa accgcaccat taggaagacg aattcctgca
    17461 ttttgaggat tattaaaata atcactgctt aaaattctat atccttgttt attgactaaa
    17521 tatccctctt cgttaagttg aaaatttcca tctttactta atcttatttc accatccttt
    17581 gtttgaacta aataaaaagc atcctctcta gtaatggcca aatccaaagg gttattagtc
    17641 gtttttaaag aacctaaact aaaatctgta tatccttgag aaacttgagg aacgccatct
    17701 atggtagtat tgacaaatct tgatgcatct cttgtgtgat tttctatagg caactcatcc
    17761 tgagtttctt taaaaatcct tttaaaatct gcaattacta catcatctct tttgtaacca
    17821 ctcgtgttaa tattggcaag attgtttgta ataacatcaa gtttattaaa ctgagttacc
    17881 atcccacccg ttgcttgata atatccattt tgcatatttt tcacctataa attttgatat
    17941 ttttaatcta taaagcaaag agtgttccaa cttttaaaaa gaatgaattt taggggatta
    18001 agcaagtaga aataaaatac tgaatgataa tttgcatcat attgtgtttt tacaaggaat
    18061 tatactaaaa aaccaaaagt atcattaaat cgcttaaaaa gcagcaacat tcatctcttt
    18121 gcccaagaaa taagagtttt ctttctagga atatgggtaa aaaatatttt aaaataaata
    18181 gtaaaaattt taaaaaagca agacttaagt aaaaatcttg cttaaaaata ttctatttta
    18241 gtccatttgg cggcgtaaga aagtaggagt ttcaatttga gccattatct cttcatcaaa
    18301 accaccactt acttttctaa gatttaaata aggatttttc ttaggagttt cagcttcttc
    18361 agcggctttt ttagctatgc tgtctctatc ttcaaatcct gtggcaataa tggtcacttc
    18421 taccctatct tccatgctat catctgtagt ggaaccaaaa ataatctttg cattttcatc
    18481 aacaatttct tctatattat ttgcagcagc agaaatttca attaaagagc aattagaact
    18541 tgttttaaaa tgtaaaataa cccctttagc tcctttaata tccataccat ctaataatgg
    18601 agattctatg gcattagaaa gagcctcttc gatagcattt tcaccgctag cacttcctac
    18661 gcccataagc gctaaaccac gatggctcat tatggttcta acatcagcaa agtcaacatt
    18721 gatatcacca ttgtctaaaa gtatagacac cataccctta acagcacgcg ccaaaatatc
    18781 atcaactaat ttaaaagcat ctttaattcc tgctttttta tcgataatac ttaaaagctt
    18841 ttcgttttga attacaagga tagaatcact ttcttttttc aattcaagga gtccgttttc
    18901 agcaagtttt tttctttgtt tcccttcaaa agcaaaaggc atagttacaa cagaaacagt
    18961 taaagcacct atttctttag ctgcttgtgc gattactgga gtagcgcccg ttcctgtgcc
    19021 accaccaaaa cctgaagcaa taaaaacgat atcactttgg ctaagactag ctttaatctc
    19081 ttcaaagctt tctctagcac tctctgctcc aacctctggt agcatgcccg cacccaagcc
    19141 ttttgttttt ttctcgccaa gttgaatttt ggtttttgct aatgaatttg aaatagcttg
    19201 tgcatcagta ttagccgcga ttaaatcgag gtcatttaag cccatcttga ccatatgatt
    19261 aatcatattt ccaccgccac caccgcagcc tataacttta attttagcgc ctttattatg
    19321 ttgcatctct tctactaaaa attcgctcat aaaaactttc tccttgttaa aattgattca
    19381 ttattttatg ccaaatattt gaaaaaacac taggcttttt ctcttttggc tctttaaaat
    19441 ctaattgttc ttgtattatt attgtatcat tttcttgcaa attttcgcca aaaaaatcag
    19501 attttgtttc attttccact tctttttgtg gaattatttc ttgtctaatt tggcggttat
    19561 aattttctat ctccccttta tatcttaact tttcatttga atcaagttca taaggcgtaa
    19621 aataacccgc accatataaa caaagtccta tagcacaagt attttcagga tcattaaaaa
    19681 tttcactaaa cccagtaatt aaatcttttc tagcagtagc aagtctaaca gaacgattat
    19741 caaaagttgc aggagctaat tcatcaatac ctgctaattt agtcattccg cctgttaata
    19801 caacgccacc tcctatgcta tttgcataac gattgtcgct taaaattttg gctaaaatca
    19861 ttaaagtttc ttcagctctt gcatagatta catttgagat gatatctaaa gaaacttcat
    19921 ttacttttct ttcatctccc atagaaggaa tttgtatcaa tgcattaggt tgttgagaaa
    19981 gggctgcata atttaattta attttctcag cttcttttaa aggagtgtgc aaagccatcg
    20041 ataaatcttg agtaatatta atcgatccaa tttgcaagca atcattataa cgaattgaat
    20101 ttccagtatg aacaaccata tcgcagatcg ctccacccat atcaatcaaa acagcaccta
    20161 gttctttttc actatcatct aaacaagcta tagctgaagc atagccagaa aggactatat
    20221 tatcaactct taaatcagcc aactcaacag ctttttttaa atttttaata tgagattctt
    20281 gagaaataac tatatgagtt gaaacctcca agcgatttcc gctcataccc aaaggatcat
    20341 ctacatgttc taaatcattt accttaaaat tataaggtaa aacatgaata atttcataac
    20401 cactcggaag atttgcagtg tgtttggctg tgcttaccgc acgatgaatt tctttgatgc
    20461 ctatttcatg atttggtata tttactacac ctatactatc aacactttta gtataagcgc
    20521 ccgaaataga aaccactact ttatcataat gaacaccgct catcatctct gcatttctaa
    20581 ctgcttcctc gatcgatttt gaagcaagct cgatattggt aatagcgcct ttttttacac
    20641 cattggtttt tgcttttgca aaaccaataa tttttaaacc ttcctcatct ttttgagcga
    20701 caatggcaca agtttgtgtt gaacctaagt caattcctaa tatattcaaa attatttacc
    20761 tttataataa atttttattg gatatgtttt tttaagctct tcgattaact cctgcttcat
    20821 ttcattagct tttaaacttt gtaaattttg attaagcatt gtgcgatatt gctgaaattt
    20881 ttcaggattc atatcaagct tttgcttatt aattttataa agtatagcct tatcttcatt
    20941 taaaataaca taagaacgat tttgatcaga attaaaaaca ttcattagaa aataactaaa
    21001 ttctgcttca tttaatatat tactaatttt agcatcattt cttacagtat ccctgcttac
    21061 gaaacctata ttagttccgc taaaattttc taaattttgc ttagcttttt cttctaaatt
    21121 ctttttcacc tgttcgctga tataaatagg cataagctct tctttagcct catcaaaagt
    21181 cttagttctt acaggattgg ttttgttaag cttgataata atataaccat tttgatattc
    21241 actcggtctt aacacatctc cattttttac ccgagataaa gcctcaagtg gatagtaaac
    21301 atctgaatct gtgatatttt catccttttg gaatttatct ttaccttctt tcaattccaa
    21361 aaatttagca ttagctatgt ttttaagctg tgctaaagca taatctttag caacatcctt
    21421 tttagcagct tcaaaactca tgattttgcc actaaaatct ttatatttaa atttattatt
    21481 ttcattatta taaaattctt ctagcttact atcatcaatt ttttgcatat ccaccggtag
    21541 ataataagta gaaatctcat atactttttt tgtcttataa tcttctttgt gttcattcca
    21601 aagcttttta agctcttctt cattaacttt tatattttct ttatcttgct ctagttttgc
    21661 tatatttaaa gaatcttgca taaaataact agctcctagc attttcaact cttcatctgt
    21721 ttgagggaga ttgaatattt gttctagttt gccgataata atttcatttg aaagagtttt
    21781 ctcatattct tttggagtca tattgtttgc attcaaaagt tcataataaa ttgttttatt
    21841 aaaatcacct gaaggatctt gaaaggcttt agtttcagca agtgcttgaa taacttcatt
    21901 ttcacttgaa cctaatccca aatctttagc aaaatttaac aaaagcttat cttcaaccaa
    21961 agagcttaat gcagcatttt caattcccaa ttgcttagca ctctcctcat ttaagccacc
    22021 gttgctaatt tgattgtaat aattaaaaat ctgattatat cttacattaa attcattata
    22081 attgattttt tcatctccaa ctacagcaac actcgaactt ctattaagat taaaatcata
    22141 agcaccccaa cctaaaaacc cagctccaac aaaagctatg gtgctaatcc atatagtaac
    22201 aacaagatat tttttgtgat gttgcatcca agtaagcata tcattccttg ataaaaacta
    22261 aactacatat tttatcgcag aagtgtttaa ttagagttta attagtggtt ttttgttaaa
    22321 tattttcatt ttgattttag ttaaaatttc gttataatta tagcttataa aaattttata
    22381 ggatatagga tttgaaaatt ccacacattc ccgttttgct caatgaggta aatcaagcat
    22441 ttgaaaaact aaactcagga tattttttag attgtacttt gggttttggt ggccatagcg
    22501 aatccttact taaagatcat ccaaacctta aacttatagc atgcgaccaa gacaaagaag
    22561 cgcttgaatt ttctaaaaag cgtcttcatg attttaaaga tagaacagaa tttgtattaa
    22621 gtaattttag tcaaatttta gaccaaattt cacacgataa actgaacgat ctcaaaggca
    22681 ttttagctga tattggagta tcttcttatc aacttgacaa taacaaacga ggctttaatc
    22741 ttcattctga ttttttagac atgagaatga atcaagatgc taaaatttca gcttttgaga
    22801 ttattaataa ttatacccaa gagcaattga gtgatatttt caaaaaatat ggggaattaa
    22861 atgatgggta ctttatcgct caaaaaattt gccaagaaag acaaaaaaat aaaataaaaa
    22921 gtgctaaaga actttacgaa ataataggaa aaacaaaaca aaatcacaga agtgtttcta
    22981 aagcaaccct agtttttcaa gctattagaa tagaagtcaa tcaagaactt gaagttttaa
    23041 aaaatttttt agaaaaatta gaaaaaatta aattaaaaaa ttgtattcta gctatcattt
    23101 gctttcattc tttagaagat aggatagtaa aaaactattt taaaaaatgg gctaaaaatt
    23161 gtatctgtga tgaaagagct tttaggtgcg aatgtggaaa caatcattct ttaggagaaa
    23221 ttataagcaa aaaagctata actccaagca aagaagaaat tatgattaat tctcgttcaa
    23281 gttgtgcaaa aatgcgcctg tttcatttta aaaatatgga aaaataatgc tagatgatga
    23341 tttcttaaaa gaaaaacaaa acatacgcca gaaaatgctt aaattttctc gcgctgttaa
    23401 tcaaggtaag cctttagatg atgatttaaa agaagaaatc tctagtgatg atattttaag
    23461 acgccgcttt aaaaaacgct caaatcattt cttggatgaa atagaagaag actatgagtt
    23521 agaatataca aaaaaatcaa atatatactt aaaagaagat ttgataaatg ttaaattgga
    23581 agaaaagcag tctttagcta aaaaaatttt ttccaaaata aaagaaaaaa acaaaaatca
    23641 agaatcaaaa aagaaaaaaa caaaaaaact tttttctttt ctgaaaaaaa aagaaattca
    23701 aggtatacaa aataaaaaca cacacaatac tcaagaaaaa catttgcata cagacaagca
    23761 aatagaaatc aaaaaaatac aaaataacaa gattcaaccc acgcaaactg acccaaaacc
    23821 cgatataaaa caaagtctag aaaatttaca aaaaaaaata caaactcaag aagtaaaaat
    23881 agagattgaa aaatccgaaa ttcaacccat taaaacagaa catgatgaag atacacaaaa
    23941 ggttaaaaat gtattactag aaggatttag taatgctact aaagaagata aaaatctcaa
    24001 tttcaatcac ttactttttg ccgtattatt tgtcagcttt gctcttgttt tatttgtacc
    24061 acaaatttat ataagaaatc aaatttacta tcttagccga gaaattgcca ctttaagagt
    24121 agaagaaagc gtacttgatg aagaaaataa agatttaaaa agacgcttag aaatcatgcg
    24181 ctttcaaaat caaattttag attatttaga atgaatgatt ttttctaaaa catattgttc
    24241 taaatttgcc tttggaattt cttcttttaa ggcttcttta taaaaatttc cagccataat
    24301 agaatatttt tcatatgaaa aataaggaaa gtgcaaagcc catgcttttt gtattaattt
    24361 ttttgaaatc attttacgag cataaacctt aaaaatatca taagaaataa aaacacatgc
    24421 ggtaaccgct acagcgctga taatactgat atgaaaatca aggcgagtaa aaagataatg
    24481 cgtaatgagt aataatggta ataaaaccaa agcacaaaaa attccaaaat atatataaga
    24541 atttaaaatt ttaaaattaa aattaagctt ggaaggatcc acaagcattc catcattaaa
    24601 caaagcatta gcctcaagca aatcacgcaa aagaacaggt tgatcggata tcttaaaaag
    24661 aaaattacaa ctaaaatctt taaatttttt catattttta cacttttaaa tttttagttt
    24721 aaaatactat ctaaagaaaa ttaaatttgg gttaaaacaa aagctcttag cttttgttta
    24781 tcaactcttc tgtgattctg gcaatctcaa gttcttcatc tgtaggaacg ataaaaatct
    24841 ttaccttaga attggcagta ctaatcattc tttcacagct tgcttttttg ttgtttaatt
    24901 ctatatcaag ctcaacacca agatgagata atctttcaca aactttttgg cgaactaaag
    24961 cagcattttc acctataccg cctgtaaaaa taatagcgtc agttctaggt aaaaccgtaa
    25021 aataagcccc tatatatttt aaaaggcgat aacaaaacat atcaaaagct aaacgcgccc
    25081 tatcatcacc ttgctcgatt tttgctccta tatctctaaa atcgttagaa ccgcaaattc
    25141 cataaagtcc gcttttttta ttaagcaaag tatcaatttc ttctattgtt aaacccttaa
    25201 gatggctaat aaatggcaaa attgcagggt ctaaatcacc acagcgagtt cccataacaa
    25261 gaccttcaag aggagtaaaa cccatggaag tgtctatact tttacctccc tcaatagcac
    25321 aaacactcgc accgtttcca agatgtgctg aaattgcgtt taaatcctct ttattttttc
    25381 caagtaattg ggctgcccta gcactcacaa aagcgtgaga agtaccatgg aaaccatatc
    25441 ttcttatatt gtgcttatca taaaaatcat aaggcaaagc atacatataa gcaaaatcag
    25501 gcatagtgcg atgaaaagct gtatcaaaaa tagctgcatt agcaacacta ggtgcagctt
    25561 tgatcattgt ttttatacct gctaaatgcg caggattatg caaaggagca aaaatactaa
    25621 ccctatctat ctctttaaga acataatcat ccactaaaca atgctcgctt aaatttcttc
    25681 ctccatgcac tatgcgatga ccacagccat ctaaagcatt taaatcttcc aaaattccag
    25741 attctttaaa aagctcgttg acaatttgca atccatgttc gtgatttttt ataggaagtt
    25801 ctctttcgaa tgtttcatca tttaaggcat tttttagtat gacttttgat ttttcttctc
    25861 caattttttc taccaaacca ctggctttaa ccactttatc atcaaaaaat ttaaatttaa
    25921 cagatgaaga gcctgaattt aaaactaaaa tcttcattca ctttcctttc ttattgtgct
    25981 tgtatagcac ttaaaataac cgtatctact atatcatcaa ccaaacatcc acgacttaaa
    26041 tcatttacag gttttttaag tccttgcaaa ataggaccga ttgccaaagc atttgctgtt
    26101 ctttgcacag ccttatagca aatatttgca gcgtcaagat caggaaagat atatacattt
    26161 acattacctg ctatcttaga atttggcatt tttttagcag cagttttagg atcataagca
    26221 caatcaaatt gcatagggcc atcgatattt aattctggat atttttcttt agcaattctt
    26281 aaagcttctt taacaagatc tacactctca cccttaccgc tatctccact agaataagaa
    26341 agcaaagcta tccttggctc gataccaaaa gactttgcag tcatagcact tacataagca
    26401 ctagtggcga gttgctcggc atttggattt ggatttacag cacagtctgc aaaagctaaa
    26461 accttatcat caagccccat aaagaaaatt cccgaaacag agtcaacacc ctcttgagtt
    26521 ttgataatct gaagcgcagg acgaatagtt tcagctgtcg tagtagatgc tccacttacc
    26581 atagcatcag ctttcccact atgtatcaac aaggttccaa aataagtcct atctttaacc
    26641 aattctttag cctcttcaag gctcattcct ttagattttc ttgcttcata taacaaagtg
    26701 gcaaattctt cgttatattc tgaatgaagc ggattgagta tttttactgc ggttaaatca
    26761 agtgccaatt catcggcttt ttgtttgata tcttgctcat cacccaataa aataagatcc
    26821 actacactac ttttaagtaa aatttcaact gcttttaaaa ttctttcatc attgctttct
    26881 ggtaaaacaa cggttttttt atttttaaca ctttttttaa tgagttcata tttaaaacga
    26941 tgcggagtca taaaatcata agcttgcaac ttatgcattt cttcaaaatt aaaattttca
    27001 ttaatcaaag cataatctct accatctaaa gcttcatcaa aatatttttg agctattaat
    27061 ttatcctcat tattaataat agccgctata ggagtgttaa gatttttagc caattttata
    27121 ctcaaatcaa aaccatcaag tattccaaat tcgcaaaaac tattaacaag aacaaaatca
    27181 tatttacgat ttaattcctc atactcttct aagatagtat tgaaaaaact atgcggatct
    27241 ttgctaaatt cttccatagc ttctctaaaa gtaaaactat aagcattttt caaagtttgc
    27301 ttaatatcaa attcctcaag ccatccttgc aaaacaggga tacgatgtac ataaatcaca
    27361 ggacagtaaa tagctatatt tttatatatc ttgctatagt ttttcaataa tttcgtggtg
    27421 actaatgtat ttaactcatc actcctagat ctcatcaaat aaagatttgc cattattttc
    27481 tccttggttt taaaaagtgg aacactcttt gctttatact tacttgaaaa actattttaa
    27541 caaataaaaa tgaaatttca tcatttaaag gacgaaaatg aaaaaagttt tattctatgt
    27601 gttacctttt gcattttttg gatgttctgc aacagtagat ccgcaaattt ctatgaaacc
    27661 tcctgcttat gtagaagagc ttgcacctaa acaaagcaac aatgtagaaa cttctcctgg
    27721 atcgcttttt ggaaaaggcg ataatccttt attctctgat aaaaaagcaa tgaatgtaaa
    27781 tgatttagtt actgtggtta tccaagaaag cactactcaa agcactcaag ccaataaggc
    27841 cacaagtaga accaatactt ccaatttagg aggaggagct ttaacaggtg gaagtggctt
    27901 acttggaact gcgatcgata aagtaaatgc ttattctaat ataggctttc aaaccaatag
    27961 tactaacaac taccaaggaa caggtactca aagtcgcaat gaaagtttta acactacgat
    28021 ttcaactcgc gtgattaaaa ttttgtctaa tggtaattat tttattgagg gttcaagaga
    28081 gcttttgatc aatggagaaa aacaaatcat acaacttagc ggtgtgattc gtccttatga
    28141 tatcggtcaa gataatacta tagatagtag atatatagca gatgcaaaaa ttctttacaa
    28201 aactgaaggt gaagtggata aaagcactag aaaaccttgg ggaagcaaag tcatagaagc
    28261 tatatggcct ttttaaataa acttataatt taagtcctta aaataaggac ttaaatttta
    28321 ttgcgatttt attttaaata tctataatta aaataaaatc tattctttta tctctctact
    28381 cttaacctca tcttctactt cagctaaaaa tctatccaca agctcgtttt ctttgagttt
    28441 tgccaccact tctccatgtc ttataacaag tccttgattt tttccaaaag ctatagccac
    28501 atcagcgccc ttagcctcac ccaaagcatt tacaacacag cccataacac tgatatttaa
    28561 aggctctttg atatgtttag tcttttcttc tacgatttta atagcactga ttaaatcact
    28621 ttgaattctt ccacaagttg ggcatgagat gatattaact ccactttttt gcaccccgct
    28681 atcttgtaaa atcgctcttg cgactttgat ttcttcttcg agctcacccg tcattgaaac
    28741 tctcatggta tcacctatac ctttaagaag caaatttccc aaagcgatag aactttttat
    28801 tgtgctatga aatttagtcc ctgcttctgt tactcctaaa tgaaaaggat aatcacaaag
    28861 tggtcttaat ctttcataag cctctatggt cttttgagca tcagaggttt tcattgaaat
    28921 ttttatatca aaaaaatcca aatcctctaa aagcttgata ttatacaacg cgctttctag
    28981 cattgcgtct acgccatatc catatttatc actgaattct ttttctatag aaccgtgatt
    29041 tacgcctata cgtataggaa tacctcgctc cttgcaagct tttaccacgt ctttaatatt
    29101 ttcttttgag cctatattgc ctggatttat acgaactcca tcaataaatt cagcacaaaa
    29161 tacagctaaa ttgtgattaa aatgtatatc tacgatcaaa ggcaaaggac tttttgcctt
    29221 aatctccttt aaagcccttg catccgccat atccaaacat gccaaacgca cgatattagc
    29281 tcctgcaaaa taaagccgat tgagttgctc taaagaacct tcaatatctc ttgttttagt
    29341 aaaaagcatg gattgtactg aaataggtgc atcaccacct attaaaacat cacctacttt
    29401 aatttgtctt gttttaaatc ttttatattc catttttaag cttctttatt ataagtaatt
    29461 ttaaaatttt agctattttt tgctttaatt atagtttaat tttgttagaa ttttaaaata
    29521 gattttagta taacacaata aatttttaaa gggaaaataa tgcaatttat cacaaaaggt
    29581 ggagttattt ggttaactgg cctagcggga agtggaaaaa gctgcattgc agaagcttta
    29641 tatcaaaaat taaaagaaaa atatgacaac attatttatc ttgacggtga tgaatttaga
    29701 gagcttttag gatattataa atatgataaa caaagtcgta ttgaagtatc tataaaacgt
    29761 tcaaaatttg cacattttct cagctctcag aatatgttag ttatcgtaag tgctatttcc
    29821 atgtgggatg aaatttatag atataatagg aaaactttaa aaaactatta tgaaatttat
    29881 attaagtgcg atatcgaaga gttgaagaag cgtgataaaa aaaggcttta tagtaaagca
    29941 ttaagtggga aaatatctaa tgtagtgggc atagatataa attatgatga gcctaatgcc
    30001 gatcttatct tggataattc taagcttgat ttacttgatg aaaaagtcga tagaattttg
    30061 caagccttaa acacataaaa ataaatttaa aaaagatagg gagagggata tcttggaaca
    30121 aattttaaaa attttaaaac aaatgttaag tcctgatcag gcacaaattc tacttaaagc
    30181 attaaaaaat tcaaataatg aaaattttta taactttgct ttagaaaata ttgaaatcat
    30241 ctgcgaatgg ctaaattcta aagaatttca agaaaattat accaatcacc cttatccacc
    30301 tttactaaat ccaaattata tcgatacaga tgcaagtagg cattgtgcag aattagcttg
    30361 ggatttaaat ttacccttac ctaaacatta taaatttatc tatatttctc cacatggcgt
    30421 aggtgctgca gcctttttaa gatacctgaa tgaagcatgt aatgtttttt gtcttgcttc
    30481 ttggatgtta ccctatgacg caaaggaaag atattgtatt aattacatgt gcctaaatga
    30541 taaaaatata tccgatcaag ccataaacat ttcggaacta aatataatta atcttgaaaa
    30601 gtatttggct ttattggatc ctcattcaaa agtgatctgt ggaatccgtg atccgatagg
    30661 aattttaaaa cataattggg gaagagactg gagtaaagtt caaagaaact ttcaaaatga
    30721 atttgatcta acttatgact atagaaatta tattaatttt ttaaaccata aaaaacctga
    30781 aataaaaatt aatctggaag aattaaatta cagtgttttt atcataaatt atctatcaaa
    30841 atatttcaat caagagtata tatattatct agatatggaa aaaattaaaa caaaaaatgc
    30901 ttttcaaaca atggaagatt tagcttttag atttggcttt actccacctt gtctaaaaga
    30961 aagtgaaaat ttatttaaaa ttcaagaatt tagaggatat atacgctatc tttttcccat
    31021 taccttatat gcaaatcaga aagatttaag caacatcttt tccattaagt ctcccaacaa
    31081 taatccaaat gctagcattg atacttctac aagcattgct attattttag atagacctca
    31141 taaaaactcg caaaaaatca atattataaa tgagatttta aataacgatt tatcaaacga
    31201 tatgagcgta tatatagata aaagtgactt ggaaaaacta gaaaaaaata ctcttttctt
    31261 taaacaaatt aaaaactatc tctatgaatt tctgcaagca attcacaaaa caatcgaaca
    31321 tacagaagat tcaatgatga aagaggaaga tgtattatta tattttagca aaaataaaac
    31381 tttggcatta gaatttaaag aaatttttaa caaagaatta aataatgtta aacaatctca
    31441 tcccaatatt atagcttctt ggaaatacta tcaagaattt gaaaaaatat gtaaaaaatt
    31501 agatgaaaaa gaataaaatt gtatagaaaa gaagatattt ttataaagat atagaattat
    31561 aaaaaaataa tataaattaa acaaataaag atataattat actttaattt agagaaagga
    31621 aatgctatga aacaggggga ttttacagag gtagcaaagc attatcacaa tagacctgct
    31681 tacagtccat ttttgcttga aaagcttata gcttgtatca atgacaaaaa taaaaatatt
    31741 aaaaatttaa atattgttga agtgggtgct ggcacaggaa agcttaccaa aatgctagga
    31801 gaaatgtttg agtgtcaaat cgatgccata gaaccaaatg ataatatgcg tgaagaaggg
    31861 cgaaaattta cacaaaattt gtcgaatatt tcttggcacc aaggaagcgg tgaagaaact
    31921 cggatgaaag acaatcaagc tgattgggtt atcatggcca gttctttcca ttggacggat
    31981 cccaaaaaat ctcttccgga atttaatcgt atattaacag ggggggggta tttcactgcg
    32041 atttggaatc ctcgccacat tgtagagggt tcggtttttg atgaaattga aaaggagatt
    32101 aaacatatta ttccagagct tgctcgtgta agtagtggta ctcaaaatgt taaaaaatgg
    32161 gaagaaattc ttgtttcaac aggagatttc gtagactgct tttttatgga gtgtgattat
    32221 aaagagcttt gggataaaga tcgttatctt ggagcttggc attctgtaaa tgatatacaa
    32281 gcacaagcag gtaaaaaaag atggaaagaa attttagata tgattgagtc taaaatttct
    32341 catatgcaga gtatagaaat tccttataaa ataagggcat ggacagctag aaaagcataa
    32401 aatattttcc ctttttttta tcaagcttgt cgaagataga aaaagggaaa caaaatgcaa
    32461 aaactagtag aacaagtgtg ggattatacc aaacatgcta aattttatag ctatagacca
    32521 aattatgctc caaagactat agatatgttg ataagtttag tcggaaaaaa cgatattaaa
    32581 gtagctgata ttggtgcagg aactggaaat ttaagtatca tgcttttaga aagaggatgt
    32641 aaggtagtat ctgtagaacc aaatgatgct atgcgtgaaa ttggtataga aagaactaaa
    32701 ggtgaaaaga tagaatgggt tagagcaaca ggtttgaatt cgacactcca aaatagcgaa
    32761 tttgattggg tgacttttgg tagtagtttt aatgtaatgg atagaaatga agccttgaag
    32821 gaaacacatc gtctgttaaa atcagaggga tatttttctt gtatgtggaa tcatagagat
    32881 ttaaatgatc ctatacaaaa aatagctgaa gatactatca tagaatttgt accaaattat
    32941 actagaggaa ccagaagaga agatcaaaga ccaattatag aaagccgcaa ggatcttttt
    33001 gataatattg tctatattga agaagatttt tattttcatc aaagtatcga aaattatatt
    33061 aatgcgtgga aaagtgttaa aaatccttat tgggatttgg agacagaaga aggaaatgaa
    33121 ttatttaata aaattagtga taaaatttca caaagacttc ctaaagaatt tagtataaaa
    33181 tataccactc gttgttggag tgctaaaaaa atataacaag gaaaaaaatg gcggagttaa
    33241 atttcaaaac caaagcacaa aatttaaaaa atttacaaac aaaattaaaa aaagcaaaaa
    33301 ttctaccttt ggtcttgact tcgcttgaag aattaatatt aaatgaagag aaaattttaa
    33361 gtgatattca agctttaaaa gccaataaac tcatcataag aagttcttct ttaagcgaag
    33421 atagtatgaa aaactccaat gcgggagctt ttctttcctt ggcaaatatc gatgcgaatt
    33481 ctaaagatga attattaaaa gctttatata aagttgctaa ttccatgcca tcaaaaagtg
    33541 atgaaatttt aatccaacct atgcttgaaa atattacact ttgtggtgtt ggttttagcg
    33601 tcgataagga taatttttct ccttattttt gccttcaata tgatgaaaat ggttcaaata
    33661 attccattac agatggaagc agtaagagtg caaaaactta ctatcactat agagagcatt
    33721 tggattttaa agatatcaaa ctccagaaga ttatagagct tataaaagaa ttagaatctt
    33781 tatatgattg ttgtttttta gatgttgaat ttgcatttgc ttttaaagac aataaagaag
    33841 agcttttttg tttacaggta agacctttag tgatgcaaga aaaagaaaat ttatttaatg
    33901 ctttaccaaa agaagctttg caaagatttt ataagcgttt tatttctttg caaaatttgc
    33961 gtcctagagt gttaggagaa aaagcacttt ttggagtaat gcccgattgg aatcctgctg
    34021 aaatcattgg tttaagacca aagcgtttag cttttagttt atataaagaa atcattacag
    34081 ataatatatg ggcgtatcaa agagacaatt atggctacaa agatttaaga tctcatcctt
    34141 tgattcattc ttttttgggc attccttatg tagatgtaag attatctttt aattctttca
    34201 tacctaaaaa attagatgaa aatattgcac aaaaacttgt caatttctac ttagataaac
    34261 ttaataaaaa ccatgaatta catgataaaa ttgaatttga tatcgtttat tcttgttatg
    34321 attttaacag ttctaaaaaa ttacaagagc ttttaaatca cggttttaat gaaaatgagc
    34381 ttaaaagatt agaattttca ttactagaac ttacaaataa gattattaat ccccaatcgg
    34441 gactttactt aaaagatata aagaaagctt acagattaaa agaaagatat gacggtatta
    34501 ttgattcaaa tttttcttta atcgataaaa tttattggct tattgaagag tgtaagcgtt
    34561 atggaacttt accttttgca ggagtagcta gagctgcatt tgtggcaatg caacttttaa
    34621 attctttagt tgagattaat ttcataagca aagaagaaaa aaatgatttt ttaaattcac
    34681 ttaatacagt gagtaaaaat ttaagtaagc aaacaaataa tcttaactct tgtactaaaa
    34741 atcaattttt gatagaattt ggacacttaa gagcgggaac ttataacatc ttatctccaa
    34801 gatatgacga aaattttgag ctttattttg aaataaatca aaaagataat aatgtttatt
    34861 tagaagataa agcttttatt cttccagaag aaaagatgaa agctttaaat actctactta
    34921 aagaacatgg attagaaatt agtgcttgtg aattttttga ttttttaaaa cagtctatcg
    34981 aaggcagaga attgcttaag tttgaattta ccagattgct ttctaaagct atagtttata
    35041 ttgaagaatt aggtaaatat tatgatatca aaaaagaaga tctggctcat cttgatatca
    35101 aaagtatttt aaatctttat tctagtcttt attctataaa tccaagagag caatttttag
    35161 aagagattgc tcgaaataaa aaagaatata aactcacaca agctataaaa cttccttcct
    35221 tactttgcaa tactgaggaa attttttctt tttataatca tagtattatt ccaaatttta
    35281 tcacacaaaa aagtataacc gcatttacag ccaaagaaaa tgataaagat ttagaaggaa
    35341 aaattgtttt aatctatgca gcagatcctg gatatgatta tttatttaca aaaaatatag
    35401 caggacttat cacatgctat gggggtgcta actcacatat ggctattcgt gcttcagagc
    35461 ttggaatgcc tgctgttata ggagttgggg aagaaaattt tgaaaaatat ttaaaggcta
    35521 aaaaaataaa tattgaatgt gaaagtgagc aaatattttg tttataggta ttacccaaag
    35581 gcttatttgc aatgaaagtt attatgagga aagagaatgt ttggcaaaag attggggaga
    35641 attatttaat aaagatttat ttaaaaattt tattcccctt ccgcttagct atgaaataga
    35701 tttttctcgc tacaaagatc ttgtaaaagc tgtgatacta agtggtggta atgatttaaa
    35761 ttttttaaat cctaatgcaa tgtctaaaaa aagggattct tatgaaatac aagtcataga
    35821 agcttgctta aaagaaaaaa ttccactttt aggtatttgt agaggggctc aaataatagc
    35881 tcattatttt aatagttgta taagccccta tgtaaatcat gtaagcaaac atgaaatatt
    35941 ttttttagaa gaaaaattta taagtaattc ttttcacaat tttgcaattg ctagactggg
    36001 agatgaactt gagcccttat gctttgcaaa agataaaact atagaagctt ttaaacataa
    36061 gtatgaaaat atttttggta taatgtggca tatcgaaaga gaagatggat taaacaatgt
    36121 tcaaatttta aaagaatggc ttgatttgat taaggaagaa aaatgaaagc aattatttta
    36181 gcggcaggtt ttggatcaag gctaatgcct ttaacaaaaa atcaaccaaa atgtatggtt
    36241 gaatataaaa ataaaaaaat aatagattat gaaattcaag ccttaaaaga aaacaatatc
    36301 gatgaaatat gtgtagtagg tggatattta tttgatgttt taaggactta tataaatcaa
    36361 agttatgatt tagtaacatt ttataaaaat gaaaactatg ataaaacaaa tatggtgcaa
    36421 actttatttt gcgctagaga ttttttacaa aaatgcatcg aagataaaca agatttaatc
    36481 atctcttatg ctgatatagt ttattttaag aatagcatag aaaaattaaa agaagcaaaa
    36541 gaagattttg ctgttattgt ggataaagat tggaaagaac tatgggaaaa acgatttgaa
    36601 aatccacttg atgatgctga aactttaaaa ttaaaagatg gttttattgt agagcttggc
    36661 aaaaaagcta aaacttatga tgaaattcaa ggtcaatata caggcttatt taagttttca
    36721 tatctttttc taaaggaggt tataaaaact tacgatagtc ttgataagaa tttgacttat
    36781 gatggaaaag attttaagaa tatgtacatg acaagttttt tacaaatttt aattgacaaa
    36841 tacaaaaatg caaaagctgt ggaaatcaaa ggtaattggt gtgagattga ttttatgagt
    36901 gatttggaaa tcaatcctat aaaaaatcaa taggatctat atctacacta acatttttaa
    36961 aatttaaagc atattcttgt atcttaatta agaccttata aaaatcacta cgaagcaata
    37021 tataaaaacg atattgtcct tttagcattt ctatgctgca agctccatat cctatgattt
    37081 caacttttaa agtgccacta atctgatcaa ctaatttctg acataaattt tgagcctgct
    37141 tttgttcttt atcttcgatg acaattctca aaagacgctt aaaaggagga taaagatctt
    37201 ttctgttttc taattcatct tgcaaaaagc tatcataatc ctctatatat ctttcaaaga
    37261 aattcctatt tttagtttgc aaaagtaccc ttccctcacc tttgcgccct gctcttcctg
    37321 ctacttgcat agccaaagct aaagtttctt cacttgcctt aaaattaggt cgaaatagat
    37381 actcatcaag ccccaagata acactcaaat ccacactatg ataatcatgt cctttagcaa
    37441 gcatagaagt tcctataagt atatcgatct tattttcatt aaaatctttc aaaacagcat
    37501 taagctttcg aatgcttgta atctcatcgc tgtcaaattt ggctatcctt gctagaggta
    37561 aagcttcttg caaaagctct tgcaattctg ccgtgcccat cttcctagcc tctagcattg
    37621 caccttgaca gctaggacaa ttttgctcta ttaaagaagt ataattacaa taatgacact
    37681 ttaaaacatt tcttttttta tgcaaactca tagcaataga acaaaaagga cattttatag
    37741 tttgcccaca atctttacat acaatttgtc taaaattagc cctagtaggt aagaaaatga
    37801 tagcttgctt ttgattttcc aagctttttt tcaactcacc taaaagcata ggagttatgt
    37861 ctagttcatt ttcatcatat aaaaaatgtt ttttgctttc aaaaaaagta cccttaagcc
    37921 taaaactctt ttgcttataa aaactcgtta aagaaggagt agctgagccc aaaagcactt
    37981 tgatatcaaa tttcgagcct aaaaaaagcg ctaaatctct agcattaata tagggttgat
    38041 tagacgcttt gtaagaatta tcatgctctt catccactat aataagccct aaatttacaa
    38101 aaggtaaaaa taaagccgat cttgctcctg cgaccaaaag tgcttcaccc ttgcaaaaac
    38161 gctctaaatt ttcttgcttt tttttctttg aaattttaga atgccataga aaaaatttat
    38221 ctttaaaata cacctctaag cgcttttgca tctgcggggt aagagaaatt tctggcatta
    38281 aaagcaaaac ctgtttccct tgttctaaat attgctttat taaacaaata taaatttcag
    38341 tttttccact acccgtatct gcaaaaagca aagaagtagg atgagtctct ataaatttta
    38401 aagcttcttc ttgcttttgg cttaattcgg gtttattttc tattttagtc gcactacaag
    38461 tataagtttg atgagtagaa aaaagtccta atacaaaacc aagttttgaa gtataataat
    38521 acgaaataaa tttcgccaat tcaaactgcg tatgacttaa tgaaaagggt gtgatttctt
    38581 taatttcttt tgtttgaaat tcaggctttt ggcattcttt taatactaaa gctctaagat
    38641 tttttttatt ttttaaatca ataataacct ctcttaaagc cggaatttct tccttgctat
    38701 gaaaggttaa attttgcaaa taaagtccaa aaactgctaa ttcataatat ctcataacaa
    38761 ttctttacaa tatttttcac taagacattc taaaatagca aaattggcat tataaaaaaa
    38821 atcaacccat tcttttgcat ttaaaaaaaa tctatatcgg ttgggtgctg ttttcatcca
    38881 agcattaaaa ctagaataaa tgggtgtgtg aagtaaagaa taagtgcaat tttggctagt
    38941 ttggcagtaa aaaagttttt ctttttgagt gttgattttt gcttcatcaa gattaggaga
    39001 aaaagaactg atttgtttga gttcaacttg agtacgcata agggataggg ctgaatttag
    39061 catttcataa tctattttca attttaataa tttcgcatcg tttttatttt gattggcaaa
    39121 agagaagctt aaacttgcca atatccccaa aatcaatatc acaaaaacaa gctctaagag
    39181 agtaaaagcc tttttcattt tacagggagt tcttcattga tcgcttttat aagtttttta
    39241 agttctcttt ctaagatata attctcatag ctttttttta caaaagcatc gacgaaacgc
    39301 tttaattcta tttttttagt accaccagaa ataagagcga tatcatcttc taaaaaattt
    39361 gcaaattctc cactgcattt aacaatgaaa tcctttgcag aaacattgat gataacttgt
    39421 tttaaattat cacttgccaa gtacagcctc tatttttttg aaaatatctt cactttctat
    39481 attgcgagac ttaagctctt cttctaaacg catgatttga ttgctctttg cttcattttg
    39541 tgctttaacg cttacaagct catttcttaa attttcattt gcttcacaca cttcattata
    39601 tttttcaatc agctcattaa ctttatctga cattgtgtta ataatttttt catcaaacat
    39661 aaatttgcct tctgctatag aaatttaaaa taaaaatatt tcttgtaatt gtagcagaaa
    39721 aaaatttaaa tttaggtttt ttatagtcaa ttaattttta attaaagcat tttcttttag
    39781 aatttttcta aaaaaacttt caaaaagtgg gaaaatgtta gaacttacaa gcgattttaa
    39841 accaagtcct gatcaaaaac aagcaataca aggcatagta aaaagtataa aaaaaggtaa
    39901 taaatatcaa accctgcttg gcgtaacagg aagtggaaag acttttacca tggcaaatgt
    39961 cataaaagaa ctcaatatgc caactcttat catgagccac aataaaagcc tttgcgcaca
    40021 actttacagc gaatttaaag gttttttttc taagaaccat gtggaatatt ttatttctta
    40081 ttatgattat tatcagcctg aagcttatat accgcgcacc gatgttttta tagaaaaaga
    40141 cagttctaca aatgaagatc tagaacgctt aagacttagc gcaactgctt cgcttttaag
    40201 ctatgaggat gtggtttgta tcgctagtgt ctcggctaat tatggacttg gaaatccaaa
    40261 tgaatacata ggaatggttt taatctttga actagacatg caaatttcac aaaaagaact
    40321 tttaaagaaa cttgtagaca tgggttataa aagaaatgat aatttctttg atcgtgctga
    40381 ttttcgcgta caaggtgata ttatagatat ttatccagct tattatgaag atgaagtagt
    40441 aagacttgaa ttttttggcg atgagcttga tgctatgtat cattacaatg ttttagaaaa
    40501 taaaaaagtc aaagatttaa aacgcttcat actctatcct acaagccagt ttagtgtagg
    40561 tgaaacaaga ctaaaacaag cgataaaaga cataaaagca gaacttaacg aacgccttgc
    40621 ttattttgaa catgaaaata aactcgtaga atatcaacgc cttaaacaaa gggttgaatt
    40681 tgatcttgaa atgcttacaa gcacaggaat gtgtaaaggc gttgaaaatt atgcaagaca
    40741 tttaacaggg cttaaagaag gtgatactcc ttatacgctt tttgattatt ttgcgattaa
    40801 aaataggaaa tttcttgtta tagtcgatga aagccatgtt tctttaccac aatttagagg
    40861 tatgtttgca ggggatagaa gcaggaagca aactttagtg gattatggtt ttcgtcttcc
    40921 atcagctctt gataaccgcc ctttaatgtt tgatgaattt atccataaag attgtcagtt
    40981 tctttttgtt tcagccactc ccgccccact tgaacttgaa cttagcaaag aaaatatctt
    41041 tcatcaaatc atgcgcccaa cgggactact tgatcctttg atagaactta aagatagcga
    41101 taatcaggtt gaaattttat ttgatgaagc caaaaaagtt atacaaagaa acgaacgcgt
    41161 tttggttact gtactgacta aaaaactagc tgaagagctt acaagatatt atttagagct
    41221 tggtattaaa gtaaaataca tgcattcaga tatcgatgca atagagcgca atgaaatcat
    41281 aagaggctta agaagtggtg cttttgatat gttaataggt ataaatttac ttagagaagg
    41341 acttgatcta cctgaggttt cgcttattgc cattatggat gcagataagg agggtttttt
    41401 aagaagtact acaagtttaa tccaaaccat gggaagagct gctagaaatg tcaatggtaa
    41461 ggttttgctc ttttgtaaaa agattacaaa atctatgcaa gaagctatgg ataccacaaa
    41521 tgagcgtcgc aaacttcaag aagcttacaa tcaaaaacat aacatcactc caacttcagt
    41581 caagcgacac atcgaagaaa gcttaaaaaa tgaagaaaac ttaggagaaa tttatcgcaa
    41641 aggtaaaaaa cttgaaaaaa tgcctgccaa tgaaagagct aaaatcataa aagagcttcg
    41701 taaacaaatg cttgaggctg ctaaagcact cgaatttgaa aaagcagcag ctttaagaga
    41761 tgaaatcaat aaattaaaag atttatagta tttttatttt gcaggaaaaa tcctgcaaaa
    41821 tattaaagat atcctgctgc taaagctaag aaatatcccg caacacaaga actaatcacg
    41881 cctataagac ctggtaaaat aaaactatga ttgataacaa atttacctat atgagtcgta
    41941 cctgatctat caaattgtat agtcgctaag tcacttggat aagttggtaa aatataatac
    42001 ccatagcaag ctgccgcaaa agccacaatc acacctggtt caacacctat tcctaaggcc
    42061 aaaggaacaa aagctgcaat agctgctgct tgagagttta caaattttga aataagtaaa
    42121 agcatgattg cataagtcca aggataatct acaactacat ctccaagagc ttttttcatc
    42181 ataggagtat gaacagcaaa catagtatca gccatccaag aaattccaaa aactgcaaca
    42241 agagctatca taccggattt aaaaatctca tttgagccga ttttttttac atctgtttta
    42301 gtaaagataa taatcaaaga acctgctaaa agcatgaaca tttgaatcac tgaaaccata
    42361 gataaaatat ccattttagg attgcctaaa gcatctactt gaggaatacc attttttaca
    42421 acttgtcccc aatttgggcg taaagaatca aatataccta ataaagccac taaagcaata
    42481 gctcctaaga aaatccacat tgcaatccaa ttgctttttg gaagttgaac acctaaaagt
    42541 gttttagaat caccataaac atatttttta aattcaggat ctttaagttt ttcttgaaaa
    42601 acctcatctt tatccaaatc ttttcctcta aaccaagaaa aaattcccac acataaaaca
    42661 ccaaaaagcg tactaggtat agtaatttga agaagattga tatagccatc aaaacctgct
    42721 aatttatgtt ctgcatttaa aagcaaagct gttaaactca caactgcaac agaaacagga
    42781 cttgcaataa tacccatttg tgaagatata gaagctgctg ccatagggcg ttctggacga
    42841 attccatttt taatcgctat gtcataaata ataggcataa tagtataaac cacatgtcct
    42901 gtcccacaaa gtatggttaa aaagcaagtt acaaagggag ctaaaatggt taagaattta
    42961 ggattgcgtc ttaaaattct ttcagctatt tgaagcatta catcaagacc gccacttgct
    43021 tgtaaagtcg cacttgcaac aaccacagct aagatagtaa gcattacatc tatagcgggc
    43081 tttccaggtt ttatatgaaa agcaaaaaca agcattaaaa tacctatacc accgagtaag
    43141 ccaagagcta taccaccttt ttttgcaccg taaaaaagac aaattaaaac aatgatgatt
    43201 tgtatcaaaa actgaatact ctcatctaga ctggttaaaa agtccatttt aactcctttt
    43261 atggaataaa tttaaaaatt attgtgatta tagcacaatt ttaaataaaa aaaacatata
    43321 gttaaaataa tataccaata aatattaaaa tatacattaa aataacattc atacaaattc
    43381 agtgtatttt tatatttttg atttgcaaga ttaaagaaat gataaattta agcattatcc
    43441 ttcaagttca tataattttt ttctatccgt tgaacttggt atatttaagt gtttgcgata
    43501 tttagtaata gtgcgtcgtc ctatatcgac tttaaattct tttttaatca actctaggat
    43561 tttactatca cttaaaggtt ttgagcgatt ttcattttta accaaatttg caacaaaatc
    43621 cttaacgccc acatttgaag tctcgccctc ttcatcaagt gcaaaagcaa aaaaatcacg
    43681 caaagggata agccctctat cacaacttag gtatttattt gccactgctc ttgaaatagt
    43741 tgaagcattg cgctctaaat caagagctaa gtctttaaaa gtcataggtt taatatcctt
    43801 acccatgaaa aaatcgtatt ggtattctac tatcatgagt cctattttat aaagcgttgc
    43861 ttttctcatc attaaagcat caactaaatt ttttgcttct ttgatgtagt gatttaagta
    43921 ttcgtgagtt aaaccatcag tttcaatgga aatttcagga taataatcat cattgatttt
    43981 taccttgatt tcattatttt ccctataaac aaagatatcg ggtataataa cgcgagaatc
    44041 ttcaaaatac tccaaaaaag gcggtatgct aaaacgctta aaaatcgcta atgcttcctt
    44101 atataaaggc tctttagtgt aattttgtat attttcaaaa tcctgaataa gcattttaca
    44161 aaaatcataa agctctgcat caagttctat attttctagc gcaaataaaa aagcttcttt
    44221 ataatctttt gctcccactc ccacaggatc aagaaattta aatcttgctc ttatgcgctc
    44281 taattcattt atatcataat cttttaaaat ttcttcatcg tattcaaaat atccctcatg
    44341 atttaaacat tctacgattt tgcctgcaag ttcttgagat ttacttgtag gaaaaagagg
    44401 gggtataatc tgttcattaa gaagttcata tacgcttttt gtggcaagac ctttattatc
    44461 cacaaatgcc gaatttgcgt tgcgtttata aaaagaatca aaataatttt tattatgctc
    44521 gtgtgtttga atgggttctt gaacgcttaa aaaagggttt tcttctgcga atttgtctaa
    44581 attttctttt aaatcttcta tatttgcttg taatataggc aaccacgaac gcagagtttg
    44641 agaaatctta gttttaggag cctgggtagt cttttgcctt aacatcaatc aaggagttta
    44701 aactccgctc ctaaataata ttttttaaca tctttattat ttgctatttc ttcagcattt
    44761 ccgcttgcaa gtaaagagcc tgatcttatt acataagctc tatcgcaaat tgctaaagtt
    44821 tcgcgaacat tatgatcagt aattaaaatt ccaatatcaa gctttttaag ctcattgata
    44881 agactttgaa tttcagccac tgcaatagga tccacccccg caaaaggctc atcaagaagc
    44941 aaaaatttag gctcacacat caaagatctt gcaatttcac atcgtcttct ttctccaccg
    45001 cttaagctta agccttttct taagcgaata ggttctatac ttaaaagctc gagcatttgc
    45061 tccacttttt catgtaaaat tttcttatcc ttgtaaaaaa tttgagcagc taaaagcaaa
    45121 ttatcttcaa cgcttaaatc cttaaaaata ctgctttctt gaggtaagta acctatgcct
    45181 agccttgctc gtttatttaa aggctcttta gtaatatcca aaccatctaa aagcactttt
    45241 ccactacttg gagatattag tccacatatc atataaaatg tagttgtttt tcctgctcca
    45301 ttaggcccta aaagtcccac aacctcacca ctatttaatt ctaaggatat gccttggata
    45361 atctttgttt ttttaataat tttttctaaa tttacaattt ctagtttact catgaattac
    45421 atactttctt ttatcatctt ctacactgat ttttatttcc aagctaggaa ttccaagttt
    45481 tagcaaagct ttttttaaat tctcatctcc ccattcaacc aaatgtaaac cctcttcaaa
    45541 aaaattctca aacaaaccat tttttaaaag tccttctaaa ccctcttgat atatatcata
    45601 atgataaata catatatctt gattttcata tttttgcatg atagaaaagg tgggagaatc
    45661 tactttctca tctaaattta aaaaactaac ccaagcttgc actaggcttg ttttaccact
    45721 agctaattct ccttgtaata aaacaacacc ttgttttggt aaagtttgaa gcatggtatt
    45781 gagttcattt ttagctagaa taaattcttt cataacttca ccacatattc actttgtgca
    45841 ttttttggaa tatttttagt agtaggcaaa gctaaaacct tatattcttg cgtataatca
    45901 gtaaaatgca aactgataat atctcctacc ttaacctctt tgctcgcctt tactatcact
    45961 ccattaatcc ccactacacc acttctacac atatcttcag aaatagctct tcttttagta
    46021 atattaaccg catttaaaaa tttatctact ctcataatgg aattttacca aaaaaattaa
    46081 atttttgaaa cccattttgc tttgactaac ttttcttcat caatttaaaa acttttcttt
    46141 aatgaatttt agatacaatt tgacaattaa atcaatattg acaaaggata ctctatgaaa
    46201 aatgaagtaa aaaaagtcgt tttggcatat tctggcggac ttgatacaag tattatttta
    46261 aaatggcttc aagatgaata caaatgcgaa gtagtaactt ttacagcaga tattggacag
    46321 ggcgaagagc tcgaacctgc tagaaaaaaa gctctttcat tagggatcaa agaagaaaat
    46381 gttttcatta aagatttaag agaagaattt gttaaagatt atgtatttcc tatgtttaga
    46441 gccaatacta tttatgaggg tgaatactta cttggaacta gcatagcaag acctttgatt
    46501 gcaaaaactc aagcacaaat tgccctgcaa acaggagctg atgcggtaag tcatggggct
    46561 acgggaaaag gaaatgatca ggtgcgtttt gaattaggtt atttagcctt taatcctgac
    46621 ttaaaaatca ttgctccttg gcgtgaatgg gatttaaata gccgcgaaaa actcttagct
    46681 tatgcgcaaa aacatggtat tgatatttct aagaaaaaag ggaaatctcc ttattctatg
    46741 gatgcaaatt tgcttcatat ttcttatgaa ggacttgttt tagaagatcc tgcacacgca
    46801 cctgaagagg atatgtggag atggagtaaa agtccaaaag aagcaccgaa tgaaagtgag
    46861 attatagaac ttgattttca aaagggagat ttagttgcca tcaatggaga gcatttaagc
    46921 cctgctgggc ttttaagcaa gcttaatgag cttggtgcaa aacatggcat aggacgcctt
    46981 gatatagtag aaaatcgcta tgtaggaatg aaaagtcgtg gctgctatga aacaccagga
    47041 ggaactatac tcttaaaagc acaccgtgca attgaaagca tcacactaga tagagaagct
    47101 gcgcatttaa aagatgaact tatgccaaaa tatgcaagtt tgatttataa tggttattgg
    47161 ttctcgcctg aaagaatgat gcttcaagct ctaatcgacg aatctcaaaa acatgccaat
    47221 ggtagagtaa aacttgaact ttacaaaggt aatgtaatgg ttataggccg agaaagtgct
    47281 aatgatagtt tatttaatgc agcttattgt acctttgaag aagatgaagt gtataatcaa
    47341 aaagacgcag caggttttat caaactgaat gctttgcgtt ttattattgc aggaaaaaat
    47401 ggaagaaaat tttaaacaag gattaaaaaa atgaaagtat tattaatcaa agatgttaaa
    47461 gctcttggaa aagcaggtga aatcaaagaa gtaaaagatg gctatggtca aaattttctc
    47521 attgctaaag gctttgctaa ggcagcaaca aacgaagttt taagaaaata tgaaagtgac
    47581 aagaaaaaag aagcagagaa tttacgcttc gaacttgcaa gcttagaaaa gctaaaagaa
    47641 gagcttagta aagttacact tgaaatttca aagcctgtag gagctaatgg aagtttattt
    47701 ggcggggtaa ctaaagatga aatcgcccat gctttaaaag agcaaaccca tatagaaatc
    47761 gataaaaaaa gcttggagtg tgatacccta aaaagccttg gcactcatga agtcagcgtt
    47821 aaattaggtc atgctatcca cgcaaaattt aatataaaca taaaggctga ataatgtttc
    47881 atgcaacaac tattttagct tacaaaggca aaaacaaatc cgtaattggc ggagatggac
    47941 aagtaagctt tggaaatacg gtgctaaaag gcaatgctgt aaagattaga aaactcaaca
    48001 acggcaaagt tttagcaggt tttgcaggat caacagctga tgcttttaat ctttttgata
    48061 tgtttgaaaa tctacttcaa agctctaagg gtgatctttt aaaagcagcg attgattttt
    48121 ctaaagaatg gcgaaaggat aaatatctaa gaaaacttga ggctatgatg ctagtacttg
    48181 atagaaatca tattttctta ctttcaggca caggcgatgt agtcgagcct gaagatggac
    48241 aaattgctgc cataggaagc ggtggaaact atgcactttc agcagctaga gctttggcaa
    48301 aacatgcaaa tttggatgaa gaagaactag tcaaatcaag tcttcaaatc gcgggcgaaa
    48361 tttgcattta taccaatacc aatataaaaa cttatgtaat tgaggatgaa aaatgaattt
    48421 aactcctaaa gaaatcgtta aatttttaga tgattatgtc atagggcaaa aaaaagctaa
    48481 aaaaattata gcaatagccc taagaaaccg ctaccgaaga atgcagctta gccctgaact
    48541 ccaagatgat atagtgccaa aaaatatcct tatgatagga tcaacgggtg tggg
//
LOCUS       DARAII010000003        43018 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.003, whole genome shotgun sequence.
ACCESSION   DARAII010000003 DARAII010000000
VERSION     DARAII010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 43018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 43018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..43018
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.003"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..983
                     /gene="cmeC"
                     /locus_tag="SB143_000103"
     CDS             <1..983
                     /gene="cmeC"
                     /locus_tag="SB143_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEF9748682.1"
                     /translation="YEAARLSIVSSVVQTYFNFVNANENEKALKDAYESAQEIYQINY
                     EKFQVGAVGEYEIAQSRANLESTALQYNEAKLNKENYLKALKILTSNDLNDILYQDQV
                     YQVFKLKDFDIPSGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPNLSLTGLLG
                     FESGDLNTLVEAGSRTWSIGGNFVMPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLVAA
                     FGEIRYALIARKTIRLQYNNAQANELSYKRIYEISKERYDVGEMSLQDYLQARQDWLN
                     ATVAFNNTKYSYANSIVNVIKAFGGGFEQGENISKNIEEESKTLDMSFRE"
     gene            complement(1012..1263)
                     /locus_tag="SB143_000104"
     CDS             complement(1012..1263)
                     /locus_tag="SB143_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748683.1"
                     /translation="MDKTKVVENLNALFKQRAEFYSYFDKNISKVGNTEVFDFSNAKD
                     LNAEEVYKQFYHLDYAMRKLLPAIYKAYEVSDSDLNRDF"
     gene            1388..2698
                     /locus_tag="SB143_000105"
     CDS             1388..2698
                     /locus_tag="SB143_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEF9748684.1"
                     /translation="MNLFQNLALKYSHAMMEKSLHKSFNVELLKNPQEKQAKKDKTYM
                     LYAHIPFCHTFCPYCSFHKYYYDEGLAKIYFENLRKELMLIKDKGFDFSSMYVGGGTT
                     LINENELLKTLELCKKLFNIKEISCESDPNHIIPEKLSMFKGIIDRLSCGIQSFDDEI
                     LKKIARYNKFGSSKQLQEKISKALGILPIFSLDLIFNFPSQTEEQLLNDLKIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVETKDNEFKYYQMIRNFFKDYQQNNGWSFSLEKNQ
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFDLNDYAKMIQEKQNANIAKASFTRKE
                     IIKYIFLTEMFAGKIQIDKFNQTLNCDLEKELFKELLGLKISNAIKKENGALITSEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDSKRLKNKDFINIMKENISSI"
     gene            complement(2732..3184)
                     /gene="hemJ"
                     /locus_tag="SB143_000106"
     CDS             complement(2732..3184)
                     /gene="hemJ"
                     /locus_tag="SB143_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEF9748685.1"
                     /translation="MTEWINEYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAENKNNK
                     GFVDVVKIQERRLYFGIQNPAMIATVISGSLMLHAHKEVLMVGSGFMHAKLTCATLLI
                     IFHIHNYFCLKALANDTSTKSGRYFRIYNEFPTLMFIIIALMMVIRPF"
     gene            complement(3168..3638)
                     /locus_tag="SB143_000107"
     CDS             complement(3168..3638)
                     /locus_tag="SB143_000107"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEF9748686.1"
                     /translation="MVKRYKTILIFILVFIAVFAFDQWVKSLTLSGLRWQSEYLDLTY
                     ALNTGVAFSMFSFLEHYLKYLHLALILALVIYLLWQKQFLREHLVAFGMMLGAGCSNL
                     LDRFIHGGVVDMFFWHKWFHFAIFNVADVMINISVALILIKEIFIKKEKNDRMD"
     gene            complement(3631..4968)
                     /locus_tag="SB143_000108"
     CDS             complement(3631..4968)
                     /locus_tag="SB143_000108"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEF9748687.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSVTNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYYDDKLIQSSKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALYPSNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALFLKEQGK
                     LKSSVVATIMSNGALKEFLNGHGIELDTCNVGDKYVLEKLKVRGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLCKKKSASTILGQIKPYPQLLTNLKISEKKDLDKIKGLK
                     ELKQDLENKNINVLFRYSGTENLIRLLLEAKDAKILEKEMKNVVEFFKKALNG"
     gene            complement(5064..6089)
                     /locus_tag="SB143_000109"
     CDS             complement(5064..6089)
                     /locus_tag="SB143_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEF9748688.1"
                     /translation="MKVKSLLIASLVAFSSLNAQSLIEEAKNSGLVALPKDQKGVDEI
                     LKANGVKATEFTLDKVELGKKLYFEPRLSKSGIISCNTCHNLGLGGADGISAAVGHKW
                     TANPHHLNSPTVYNAVLNTTQFWDGRAGTLADQAKGPIESEAEMATPAKLAVEKIASL
                     PEYVKEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDNFLNGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDENGMVKTPTLRNVVETAP
                     YFHNGAIWKLTDAIKEMGSVQLGIQISDKEAKSIETFLKSLTGTKPAVVYPQLPVSTE
                     KTPKPEL"
     gene            6268..6879
                     /gene="plsY"
                     /locus_tag="SB143_000110"
     CDS             6268..6879
                     /gene="plsY"
                     /locus_tag="SB143_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEF9748689.1"
                     /translation="MENLIIYAIAYLLGSIPFGLILAKQFAQINIQNQGSKSIGATNV
                     LRVVKEKDPALAKKLAIATIVLDFAKATIPLLVLKFLNYDLNLLWTVAVLTVFGHCFS
                     IYLLFEGGKGVATGAGAMIVLLPLELITAFIVWFIVGKIFKISSLASLLALLVFIGSS
                     FIFNYDMQTIKTHAPVFIIAFIIIYKHLPNIKRLVFKEECKVI"
     gene            6864..7181
                     /locus_tag="SB143_000111"
     CDS             6864..7181
                     /locus_tag="SB143_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEF9748690.1"
                     /translation="MQSHINIKMQFKCIIGILKFERKKKQKVCIYLTAKANDFLDYAK
                     VSKRIKKYYKKEQFLTLEESLEFVCAKLHRKFPQIYYIKIKTYKPEIIKNARVGVKLK
                     KFY"
     gene            7260..7931
                     /gene="hsrA"
                     /locus_tag="SB143_000112"
     CDS             7260..7931
                     /gene="hsrA"
                     /locus_tag="SB143_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEF9748691.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLASWNLPDGDGAELVNTIKHKSPRTSVMIMSAKADKDTEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            8046..8291
                     /locus_tag="SB143_000113"
     CDS             8046..8291
                     /locus_tag="SB143_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEF9748692.1"
                     /translation="MALLITKDCVCCDACREECPDEAIYEHSPIYVIDADLCSECVND
                     FSEPACIVACPYECIIPDPDNVESIEELKLKNRNREF"
     gene            8291..9751
                     /locus_tag="SB143_000114"
     CDS             8291..9751
                     /locus_tag="SB143_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEF9748693.1"
                     /translation="MAKKTAVVDLGSNSIRMVVFEKTSRYSFYTTCEYKRKVRLGENA
                     YNNGKILQEDSMQRAENALAFFKQCALKHKCKKIFIIGTSALRDAPNSKDFIKRIKDK
                     LNLNIRCIDGKNESYLGGLATLNLLSPFKDGTTLDIGGGSSELCLIKNNKIISCISLD
                     LGTVRLKELFYDKGKADALDDFIKPILEQIPSEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNIHDFRYMLEDEKEHILKIFNSKADALINFGIKKDRFDTIKEGIFIFLKIAEKL
                     KAKQIITSGVGIREGVYLQDLLRPKHTFPVNFNPSLKSLQDRFLQGNINNKTPYFSIQ
                     IFKVLQGLHKIHEKYQQSLLNAAKLCHLGEYLNFYFANEHSAYFILNGLNYGFSHQEK
                     VLIATLIKLNGKKVNPYNLEPYRQLLPNTHIISWLNFILSLAKILSTNENKIEIAFVN
                     NTLYIYSESKILDLPKDELKKITKPATIALAINQKP"
     gene            complement(9748..10539)
                     /locus_tag="SB143_000115"
     CDS             complement(9748..10539)
                     /locus_tag="SB143_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748694.1"
                     /translation="MKVLLLSILALPLFAVELISYNIYDRNDRVDLMLSFDSAYGGKI
                     SQKKEKNLTLLTLSDLKYSKEELKSLNSGLVDKISISSKDNNTYIMLQNKEPISLELS
                     SINDKFGVRIRAVQQGKESINPEQSNLSTNEEPILNSKKTSLEGYDYTNYILVMLVLF
                     VLLIVLWWLKRTLAFKNTGVSRDFRMVFQRFLDKNNQLIVFEYASKRYTMIVGNSNIV
                     LEEIEIPDYEPKVTEKSEKNFDSFFEENKKRIQSLIEQRQKNKKS"
     gene            complement(10539..10847)
                     /gene="fliN"
                     /locus_tag="SB143_000116"
     CDS             complement(10539..10847)
                     /gene="fliN"
                     /locus_tag="SB143_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEF9748695.1"
                     /translation="MGSDIDFGDRHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(10847..11269)
                     /locus_tag="SB143_000117"
     CDS             complement(10847..11269)
                     /locus_tag="SB143_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748696.1"
                     /translation="MLKVLEYSITHFFEHILRLHIEKAEDIVGELYGASIPVMEKSGR
                     EYHFYLFFPKEFLQTIANVLVRDEKFKEDDWCDLSKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGRVDFSSIILDESLTYSFENHYFRIGYCK"
     gene            complement(11339..12088)
                     /locus_tag="SB143_000118"
     CDS             complement(11339..12088)
                     /locus_tag="SB143_000118"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEF9748697.1"
                     /translation="MVDFTKFYKDKANVAYMVLGYPNLKISEEFLKRLDESSIDVLEL
                     GIAYSDPIADGEIIANAAKIALEQGADIHKIFELLAKIKTKKALVFMVYYNLIFSYGL
                     ENFVKKAKALGISALIVPELSYEESKPLYKECQKYDIALITLVSITTPKERVKELVKN
                     AKGFIYLLASVGITGGQSADNKLLQEKIQEIRSFTQLPIYVGFGVKNNTDVRNMRKLA
                     DGVIVGTNIVKLFASNDVNQILKGVEEIFEK"
     gene            complement(12081..13259)
                     /gene="trpB"
                     /locus_tag="SB143_000119"
     CDS             complement(12081..13259)
                     /gene="trpB"
                     /locus_tag="SB143_000119"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEF9748698.1"
                     /translation="MKKAYYGEFGGQFLPESAMFALNELEDAFLKFAQDKAFKKELQG
                     LLTTYVGRPTPLYFARNLSKKYGHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKVNAIQSGL
                     KTLKEATTAAIQAWVGDIKNLFYVVGSAVGPYPYPKMVTHFQSVIGKECKSQLKKLGK
                     KVDYIIAAVGGGSNAGGIFYEFIKDESVNLIGIEAGGLGVDTLYHAATLTKGKTGIIH
                     GMKTKVLQDELGNILPVHSVSAGLDYPGIGPLHAFLSQSGRAKYYAITDEECMMALKM
                     LCKEEGIIPAIESSHALAFLEKLCPKLNKKSVIVVNLSGRGDKDMQTIREYKKGTIYG
                     "
     gene            complement(13256..13855)
                     /locus_tag="SB143_000120"
     CDS             complement(13256..13855)
                     /locus_tag="SB143_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEF9748699.1"
                     /translation="MTKLKICGIKDENNAKEIAELNVDFMGLIFAKSPRQLSLEQAMN
                     LSDIIHAGFKKSVGVFVDENLEFILKAIKQAKLDGVQIHRKISEFEFKTLKESGVFVW
                     QVLSVGDRLELEENIYADLILFDTKGKFHGGNGESFNWDLLKDFKKDFALAGGIGTHN
                     INEALSLKPKIIDLNSKIEKENHLKDVEKIKYILKEMRK"
     gene            complement(13842..15434)
                     /gene="trpD"
                     /locus_tag="SB143_000121"
     CDS             complement(13842..15434)
                     /gene="trpD"
                     /locus_tag="SB143_000121"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEF9748700.1"
                     /translation="MILLIDNYDSFVFNIKSMLENVYKGEILVVRNDKITLDEIKALN
                     PNYIILSPGPKHPKDSGVCLEIFKSRLNIPTLGICLGHQALGFSFKAEIAKLQNPMHA
                     KNSLIKIYNKDTIFKDFEDEVSVMRYHSLEVKNLPDDFEILALSDDNVIMAIKHKTLP
                     YFGVQFHPESYFSEYGIKIFANFLNQEKAVQDKKHTLGFYLQKMSENHYLESEDFSEI
                     CKIIMSRDYEPLQAAALLVLISEKSLNQKSLSSLVREILRYSKTFSDESDMIDICGTG
                     GDNFKSINVSTASAFILAALGVKVAKHGNRAISSSSGSTDVLDALDVKIPDNLECALN
                     DLQNKNLAFFHAPYFHPLVGELRELRAKLGIRTVFNVLGPLLHPNLKLKYQMMGNYHA
                     PVHKLLAEVLRSLGRKRALVVRGNDGMDEISICDETKIFEVREGEIYEYGVTPEQFGF
                     KRAFHSEIMGGNAYENAKDLKDILSGKIQGAKFDIVVLNSMFALYTANKVSTPLKAKD
                     IILEAIYSGKVMEYFRSLNDKA"
     gene            complement(15436..16677)
                     /locus_tag="SB143_000122"
     CDS             complement(15436..16677)
                     /locus_tag="SB143_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEF9748701.1"
                     /translation="MLEMKANLYYRQILKEFPSSYFAEDSTRVIIGIDCDFYDAKDIT
                     LSELKAKFYENASREQICKYSGFFGVFSANFISLFENLPSNENKNYDFPNFLFANAKA
                     YLVYEKTSKMFFKYGENKYFDFLKEDFVFDKKVCEYKILQDFQEEKRDFIQGVEKAKE
                     YLLSGDIFQVVLSKQLCIEHNFDSFEFYETLSELNPSAYMFYFPTQYGVVLGSSPEFL
                     LKIKNKEIFLAPIAGTRNLDENSDILKLEKDLLSDEKELSEHKMLVDLARNDASKFGT
                     NTRVENLFSITRNKFVMHIVSEVYATMDKQANIFDIIGAVFPAGTLSGAPKIRALEII
                     NELENLDRGVYGGAVGFLNFNEDVVLAIIIRSAFFKENKAFIASGAGIVLQSDPQKEY
                     EEICAKRKALLVSFEKMAKRS"
     gene            17061..17846
                     /locus_tag="SB143_000123"
     CDS             17061..17846
                     /locus_tag="SB143_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEF9748702.1"
                     /translation="MNFTDLPYIFIGIFSGITSGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAIFGSYINYKKKNLNLKDGIVIGLGGLLGASFSGILLQALSDVALTA
                     IFLGVSCVFFIKYAFGIKESVVKSHKSVWVKNGILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASISGIISFANSGVIDAEVIHKGVLVGFASMIGV
                     FIGIKIIEKMHISAHRKILLCVYALSILATTLSLLRKLGILAF"
     gene            17934..20756
                     /gene="uvrA"
                     /locus_tag="SB143_000124"
     CDS             17934..20756
                     /gene="uvrA"
                     /locus_tag="SB143_000124"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEF9748703.1"
                     /translation="MNDTIKIIGAKENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVGEILKFPKGAKIIIYAPLVREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEDIELSKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLEESFGEIEIEVLNPDEVGLNKHYHFSEHSACFACKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDESLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKLPFAELSEEQKRLVLYGNAKTIDFFWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCAGHRLKPESLAVKIASKGLGEILDMSIEDSTSFFANKKNFSYLSEQERL
                     ISEPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFAGTYKELLKSKSETALYMNGKKQISQLQNREQKEWLELKNVNINNIKDLSVSFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCHGKRYNDATLEIKYKGKNISEILNMSVLEASEFFAAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKIISTGSVE
                     KVAKDHKKTKSYTGYYLDLELKNAKS"
     gene            20758..21291
                     /locus_tag="SB143_000125"
     CDS             20758..21291
                     /locus_tag="SB143_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748704.1"
                     /translation="MTQEQKISFFKIKRLSIYIFFCALYNFFYFFSYENVGSLHCEFL
                     CISGRFLCFFSWIYIVLAFIFMVARIYFLFSSKKILIYFLLAIISLGSSFFLLENKIL
                     FLGLLALFFVFYFLFSLTLASLFKEVKMSFYFVFLCMLLAFLFFEKLSFLFFFLALHF
                     LTFAYAFDRYETLKKLY"
     gene            21313..21990
                     /locus_tag="SB143_000126"
     CDS             21313..21990
                     /locus_tag="SB143_000126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748705.1"
                     /translation="MSNLNFHQMFEIQRQNDFKSIKKLAWVVFISFLLCVCFQFLPII
                     LDFAYDLKLLKFNSNTNILAMVFNAIFLISYLIMILKLYFVSQSKVLLISFFIAAFTQ
                     FIALLSLNYLIASPVVDKILRIFLYGFSFLCLAIAIFCTFIFFKTLKTLCENKIYFKL
                     CFIFKSAILIIIYILMFVLIYSEHSLALIIAYFMIFFFAGLLFTIYYALFAFALSKNQ
                     NIKLSQT"
     gene            22003..22593
                     /locus_tag="SB143_000127"
     CDS             22003..22593
                     /locus_tag="SB143_000127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748706.1"
                     /translation="MKKKIFKFSILFTIFISLSQSTLVFIFNHYLIIDYSAYETLPQS
                     FAMLNLADQKLYHLTQNLRFLHSILAFLLIISFFFVHLFFFYISRKEKFIPYSFFCFV
                     LMVISAIANLLEGIEQKESIFWYYKAFLDVGVCLIYLLFLDKFFQSHLFKIFFVCACL
                     CTILTKFKFMDFTTPFVLPIYLFILLILMRKKSFNV"
     gene            22586..23029
                     /locus_tag="SB143_000128"
     CDS             22586..23029
                     /locus_tag="SB143_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEF9748707.1"
                     /translation="MFDFLYNDISYLGLFIVCFLSSTLLPLASEAFVVAFIKLDFNAH
                     LVLFIATLGNTLGSLSTYALAYLGKEKILEKYFSKSLKKLDKFNANFTKFGSLYAFLT
                     FLPLIGDIFALGLGFAKYPFIKACFFISLGKLSRYIFIIFIANSL"
     gene            23093..25732
                     /gene="polA"
                     /locus_tag="SB143_000129"
     CDS             23093..25732
                     /gene="polA"
                     /locus_tag="SB143_000129"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEF9748708.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIIFALDSKGKTFRSDIDPNYKKNRTPPPPELLEQIPICIEMIEKMGFMSA
                     SYEGYEADDIIASVVKTCKDKDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEEA
                     CFEKYGVKPYQIKDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRKLLLEGKENAFLSKKLASLYEDLEVSNLLEKADFPQDEPLLKILEILEHYELN
                     VLLKKLRQNPDNKDKNLGFKATLIQDEDKLFEILNSLEQESIIAFDTETTSIDTKEAK
                     IVGFSFCMSENEAFYVPLTHNYLGVGKQVSLQSAKKAIELIFKHFIIGHNLKYDFKII
                     ENNFKLSLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLEPHLLDLAKNYEFDFIKIIMMMEENGIKLDT
                     HALEILMKKFESEIKILSEEIYALCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNELLDKHPVISKILDYRELAKLYSTYCEPLLKLALKDENSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFIAKEGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFKNDEDIHARTAIMIFGESNYETRSIAKSINFGLIYGMGYKTLSKNLKIEANLAK
                     TYIEKYFENFTSIKSYFEKVKNEAKANGFISTLSGRKRYFDFENAKPMQVAMYERESI
                     NSILQGSAADIIKFAMLEIAKILNQDKRLILQIHDELIFEVKDELCENFVKKTSDIME
                     NIVKLKVKLKTSSSIAKKWGDLK"
     gene            25748..26524
                     /gene="motA"
                     /locus_tag="SB143_000130"
     CDS             25748..26524
                     /gene="motA"
                     /locus_tag="SB143_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEF9748709.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVIHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKIVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTNE
                     IENEFLRNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIIFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGRKMKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            26527..27258
                     /gene="motB"
                     /locus_tag="SB143_000131"
     CDS             26527..27258
                     /gene="motB"
                     /locus_tag="SB143_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEF9748710.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTATQTVQQETQDTYKYKGSQEEKEDELSKLKQMAVNQQEVIKKL
                     QAALDQSENQEILNLPSKVEFERGSAQIVSADIQDYLKRIAQLISYLPPQIEIEIRGY
                     TDNSDSALRSYDLGYTRAENVLKYLIEGGVSTKNINLKSYGLNSPINGNPQALENNRV
                     QIYFKVDIKDNDAKQSVLDLIEKSK"
     gene            complement(27273..28361)
                     /gene="flhB"
                     /locus_tag="SB143_000132"
     CDS             complement(27273..28361)
                     /gene="flhB"
                     /locus_tag="SB143_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEF9748711.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIVGFVI
                     TLFMMGFIGERITNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLILLAPIVLSIMIAG
                     ILGNVMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKLVESVKIVLKVGVVFTVAFI
                     VLLKFMQELPLVERYNIIGQLIWLRDRAIILAAIVIIAFLVIAVLDIFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTTKEQAPRVVAKGVDFLALRIKQVAYDNNVVVYENPPLARELYKACDINDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKNN"
     gene            complement(28483..29079)
                     /locus_tag="SB143_000133"
     CDS             complement(28483..29079)
                     /locus_tag="SB143_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEF9748712.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVEDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMIRMVDTML
                     FTNEHGEVCPAGWNKGDAGMKANPKGVAEYLDKNEDKL"
     gene            29335..29619
                     /locus_tag="SB143_000134"
     CDS             29335..29619
                     /locus_tag="SB143_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEF9748713.1"
                     /translation="MAVKITDSCIACGSCIDECPVSAIVDDANNPEGEDRYYVYADKC
                     VECVGHNDQPACASACPTDGCIVWSEIASGQPSRDNIGSDMRDGTTPVFA"
     gene            29720..30133
                     /gene="ndk"
                     /locus_tag="SB143_000135"
     CDS             29720..30133
                     /gene="ndk"
                     /locus_tag="SB143_000135"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEF9748714.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AEAFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAQPGTIR
                     ADFAESIDANAVHGSDSLENAKIEIEFFFKSNEIC"
     gene            30133..30492
                     /locus_tag="SB143_000136"
     CDS             30133..30492
                     /locus_tag="SB143_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748715.1"
                     /translation="MKIAFSRINNTNYPFKLNLENVVFEGNLVKVNPKLVKINATMQG
                     FVYRPCDSCGEELELEIKENLDLFASDGIFKDNTNELSNTIEFFDGHIDLIEVAVSEL
                     EAYLSDYFYCNNCKNKS"
     gene            30516..30662
                     /gene="rpmF"
                     /locus_tag="SB143_000137"
     CDS             30516..30662
                     /gene="rpmF"
                     /locus_tag="SB143_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEF9748716.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPN
                     TKEY"
     gene            30668..31654
                     /gene="plsX"
                     /locus_tag="SB143_000138"
     CDS             30668..31654
                     /gene="plsX"
                     /locus_tag="SB143_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEF9748717.1"
                     /translation="MIDIAIDAMGGDFGEKPIIEGVIEALKERPFNAILVGNPNILRP
                     LIPKNLEQYIQYENANEVFSMNENATDALKRKETTIYKTIELVKNGKAKAAVSAGHSG
                     ASMSLATLRLGRLKGVLRPAIATLMPNTTSKTLFLDVGANTDCKAENLFQFAIMGDAY
                     AKEIMKISKPRLALLSNGEEECKGNELTKEAHQLMKQIPSFVGNAEGRDIFNGEVDVL
                     VCDGFDGNVILKACEGVATAIIHILKNEIKQSLISKIGALLMKPSFKRLKKHIDWQEY
                     GGAPLLGVNGCVIISHGKSDARAIKNAIFQAINFSESNINQIIEKELEKYNA"
     gene            31647..32624
                     /locus_tag="SB143_000139"
     CDS             31647..32624
                     /locus_tag="SB143_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEF9748718.1"
                     /translation="MPKASLKSIASYIPEQILSNHDLEKIIDTTDEWITRRTGIKERR
                     IASKDESTSDLGTKAAIKAIERANLKPQDIDAILVATLSPDYFTMPSTACKIAANLGL
                     NGISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKASSIMDYTDRSICILFG
                     DGAGAGVVSLDENNPIIDVHTASNGNYGDLLMTERSQESKEASSLAMKMKGNEVFKIA
                     VQTLSNDVVEILSKNQILPEQIDLFIPHQANLRIIKAVQERLNLSDEKCVVTVHKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENFS"
     gene            complement(32852..33928)
                     /gene="serC"
                     /locus_tag="SB143_000140"
     CDS             complement(32852..33928)
                     /gene="serC"
                     /locus_tag="SB143_000140"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEF9748719.1"
                     /translation="MRKINFSAGPSTLPLELLEYAKNELCDYQGKGYSIMEISHRSKV
                     FEEVHFGAMQKAKELYGLNDDYEVLFLQGGASLQFAMIPMNLSLGGVCEYANTGVWTQ
                     KAIKEAQILGVNVKVVASSEESKFDHIPQVEFSDNADYAYICSNNTIYGTQFKNYPKT
                     KAPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGISCLFIRKDMLERSQNKNLPS
                     MLKYSIHAQNQSLFNTPPTFAIYMFNLEMKWLLDQGGLDAIDAKNSQKAAMLYECIDS
                     SEGFYKGHADKKDRSLMNVSFNIAKNSELEPIFVKEAEEVGMLGLKGHRILGGIRASI
                     YNAVTLDQVKTLCEFMKEFAKKYN"
     gene            complement(33938..35101)
                     /locus_tag="SB143_000141"
     CDS             complement(33938..35101)
                     /locus_tag="SB143_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEF9748720.1"
                     /translation="MKVSELNLKAKALLETHLNDIVLSGELSKITMHGSGHWYFDLKD
                     EKSSIACAMFKGANLKVDFQPKVGDFLELVGSVSLYAESGRYQFIASSMKKAGMGDLE
                     AQFLALKERLQKEGLFNSEYKKTLPQFPKKIGIITSKTSAALQDMLKLINQKEYFLAK
                     IYVFNALTQGSGAAYSLIQALKKADEIGLDVIIIARGGGSREDLFCFNDEGLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLLYSRLDLEQGLDLLEEKLTKLW
                     ESKLEYCENLLSNLHKFFKAKSLEAMIEAKEKQLAFLLKQAKIIIESKIQKAELELQK
                     LQNAFFQHENFFKKSKNLISIKKNGKIANLEELKSEDIITLSSQTLQKEAKIL"
     gene            35274..36232
                     /locus_tag="SB143_000142"
                     /pseudo
     CDS             35274..36232
                     /locus_tag="SB143_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787974.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter substrate
                     binding protein"
     gene            36237..36680
                     /locus_tag="SB143_000143"
     CDS             36237..36680
                     /locus_tag="SB143_000143"
                     /inference="COORDINATES: protein motif:HMM:NF018979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter TctB
                     family protein"
                     /protein_id="HEF9748721.1"
                     /translation="MSSIRIVAGILLVISLIGIYIGWNIHSDFNYEPLGPRPFPVGTL
                     ILIALCSIFLVFFSEDTKVKWGDFILWKKLIVLTLAFLIYALFFKFLGFIICTIFLIF
                     TITLLFGATLIKAIVFSISSSIILYYLFNTLLQITLPFGFIFDNF"
     gene            36694..38187
                     /locus_tag="SB143_000144"
     CDS             36694..38187
                     /locus_tag="SB143_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tripartite tricarboxylate transporter permease"
                     /protein_id="HEF9748722.1"
                     /translation="MDTWMYLMQGFSIALDPYNILIALIGCFIGTIVGMLPGLGPING
                     VAILLPLAFAMNLPAESAIILLATVYMGCEYGGRISSILLGIPGDAAAIMTTLDGHPL
                     AKKGQAGKALSISALSSFIGSFIAICGIILFAPLIAQWSLKFGPAEYFALIVFGLATL
                     GSMLAQKPIRSFLSALIGLFLTTIGIDGNTGVYRFTFDSPHLYDGISFVVLVMGLFSV
                     SEIFLMLEHTQTSQNIINKTGKILVNIKEFFFCFWTIIRSSIIGFFVGVLPGAGATIA
                     SAITYMSEKKIAGEKGKFGQGDLKGVAAPEAANNASACGSFIPMLTLGLPGSGTTAVM
                     MGALTLYNITPGPTMFTDQVNIVWGLIASLLFANVILLLMNLPLVGIFVKILSIPMWS
                     LAPIIAIVSIIGVYSINSTDFDIILILIIGILGYFLRKLEFPMAPLILGFVLGEQLET
                     NLRRALSISNGDFSILWSGIIAQSLLIGAVLIILIPLLIKKLRKSKF"
     gene            complement(38184..38891)
                     /gene="ubiE"
                     /locus_tag="SB143_000145"
     CDS             complement(38184..38891)
                     /gene="ubiE"
                     /locus_tag="SB143_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEF9748723.1"
                     /translation="MQKQDKIIKMFNEIAPTYDKANRILSFGVDVSWRKFACKRVLKL
                     YQKDNLNIVDVACGTGDMIEIWQESAKKLNKNIAHIKGIDPSEGMLNIAKQKFPNIEF
                     IEAGAQELPLQSESVDIVSISYGIRNVVERKKALREFSRVLKQDGIFVVLEFTKREKG
                     GFVASCRDFYLKNILPSLGGMISKNKSAYEYLPNSIEGFLSKEEFIAELKQVGFEMLE
                     FKSFSFGVSSMFIAKKV"
     gene            complement(38891..40093)
                     /locus_tag="SB143_000146"
     CDS             complement(38891..40093)
                     /locus_tag="SB143_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748724.1"
                     /translation="MVHEIQKTFLLPDATLLEKLQKDGIVFEIYEIETFYTKITYFYD
                     VKFQNLNGNFYKITRLNNPILEQNQEEKISKKDYEKARKKLIEKSIKKKRYEFKLCSF
                     KSLIDVYEDFNLYVLKVFFPTLEMANLFTPPKEFRIQRELCGVLDSKNIILYGFNNLE
                     IDIEKCFKIIEKNQNFTLDFPSSILAFDGYRIFLFYLFRKLKLYWNLALENRQREVFC
                     EFFSYARKIYIILMSTEEIFDEELNKNLALRFEDLVKQSYCILANNELDENLLLFLGS
                     EDLQNLLSDFDFFIKEDSFYKSEQEKYFFKQMIAMQLRKRLVLFKKNLLKNFEIETFE
                     ENFLGLSVFLEYFHNLYNLKILSKLYNKYFICDLEKKTLLKLTKKKEKLGKLIHKASK
                     KLKIYKGY"
     gene            complement(40139..40549)
                     /gene="perR"
                     /locus_tag="SB143_000147"
     CDS             complement(40139..40549)
                     /gene="perR"
                     /locus_tag="SB143_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEF9748725.1"
                     /translation="MELLQILKKHELKATPQRLCVLKILKRHEHPNIEELYEEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVANQKTCYDIYEERHIHIICNKCGNIEDMSFQD
                     AELDEYQEKLEKKMGNIIDHLAVCAHVSTCKKCH"
     gene            complement(40686..42563)
                     /locus_tag="SB143_000148"
     CDS             complement(40686..42563)
                     /locus_tag="SB143_000148"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEF9748726.1"
                     /translation="MNEIIKKDYQFAYTKEELEKLNLTQLEDLAARIREKIIDVVSKN
                     GGHLSSNLGAVELTIAMHTVFDNGIDPLIFDVSHQSYTHKLLSGKENVFESLRQFGGL
                     SGYTKPNDGDYFVAGHSSTSISLAVGACKAIALKGEKRTPVALIGDGALSAGMAYEAL
                     NELGDSKFPCVVILNDNEMSISKPIGAISKYLSQAMATQFYQNFKKRVAKMLDALPDS
                     ATYMAKRFEESFKLITPGLLFEELGLEYIGPIDGHNLSEVISALKQAKAMQKPCIVHA
                     QTLKGKGYSLAEGKNAKWHGVSAFDVDSGESVKKSDTKKSATEIFSKNLLDLASKYEN
                     IVGVTAAMPSGTGLDKLIEKYPNRFWDVGIAEQHAVTSMAAMAKEGFKPFIAIYSTFL
                     QRAYDQVIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDE
                     LMMKNIMEYAYTHEGCLAFRYPRGSFILDEEFNPTKIELGKAQWLVKNQSNIAFLGYG
                     QGVGKAWKVLRKLQDEGQNANLIDLIFAKPLDKLLLKELAKQSQIWFVFSENARIGGV
                     ASLLESFVQENDLKIKIVSFEYEDSFIEHGKTNEVEKALKLDIDGLVQRVKINWVDNI
                     L"
     gene            complement(42556..>43018)
                     /locus_tag="SB143_000149"
     CDS             complement(42556..>43018)
                     /locus_tag="SB143_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEF9748727.1"
                     /translation="KFSKEGYEQARAEFEKELNDLRDKYLKSVSKLEEACVNLNAFIE
                     KNEKELADTAIDIAKEVILKELENNSSKIAYALAKDLINELKGAGSIEIKVNSIDYNY
                     LKEHFSENSHIKITLDDAISKGSVIILSDSGNIESNLNARLIKIKKMVNNE"
BASE COUNT        14709 a         7110 c         6331 g        14868 t
ORIGIN      
        1 attatgaagc tgcgagactt tctatagttt caagcgtggt tcagacttat tttaattttg
       61 taaatgcaaa tgaaaatgaa aaagctttaa aagatgctta tgaatctgca caagaaattt
      121 atcaaattaa ttatgaaaaa tttcaagtag gagcagtagg agaatacgaa atcgcgcaat
      181 caagagcaaa tttagaaagt actgctttac aatacaatga agcaaaatta aataaagaaa
      241 actatcttaa agctttaaaa attctaactt caaatgattt aaacgatatt ctttatcaag
      301 atcaagttta tcaggttttt aaactcaaag attttgatat accgagcgga atttcaagca
      361 ctatactctt gcagcgtcct gatattggat cttctttaga aaaacttact caacaaaatt
      421 atctagtagg agtagctcgc acagctttct tgcctaatct ttctttaaca ggcttattag
      481 gatttgaaag cggggattta aatacacttg tggaagcggg ctctaggact tggagtatag
      541 gtgggaattt cgtaatgcca attttccact ggggagaaat ttatcaaaat gtgaatttag
      601 caaaactcaa caaagatgaa gcttttgtaa attatcaaaa taccttagtt gcagcttttg
      661 gagaaattcg ctatgcttta attgcaagaa agactattcg cttgcaatac aataacgcac
      721 aagcaaacga attatcctac aaaagaattt atgaaataag taaagagcgt tatgatgtgg
      781 gcgaaatgtc tttgcaagac tatctacaag cgcgtcaaga ctggttaaat gctacagttg
      841 cttttaataa taccaaatat tcttatgcta attctatagt caatgttatc aaagcttttg
      901 gtggcggatt tgaacaaggt gaaaatatca gcaaaaatat agaagaagaa tcaaaaactt
      961 tagatatgtc ctttagagag taaaacttac tctctaaatt agagcttatt tttaaaaatc
     1021 tctatttaaa tcagaatcac taacctcata tgctttataa atagctggta ataattttct
     1081 catcgcataa tctaaatgat aaaattgctt ataaacttcc tctgcattta agtccttagc
     1141 attgctaaag tcaaatactt cagtattgcc aacttttgaa atattcttat caaaataaga
     1201 ataaaattcc gccctttgtt taaacaatgc gtttaaattt tctactactt ttgttttatc
     1261 cataagccat cctttctaat tattttgaaa gttatagcat ttttttgcta aaaataaaaa
     1321 aaatttacac ttgatttaat aaaaaattga taaagttata ttatattttc tactttaagg
     1381 tgggttaatg aatttatttc aaaatttggc tttaaaatat tctcatgcta tgatggaaaa
     1441 atctctacat aaaagtttca atgtcgaact tttgaaaaat cctcaagaaa aacaagccaa
     1501 aaaagataaa acttatatgc tttatgctca catacccttt tgtcatacct tttgtcctta
     1561 ttgtagtttt cataaatact attatgatga gggattggct aaaatttatt ttgaaaattt
     1621 aagaaaagag cttatgctta taaaagataa aggttttgat tttagctcaa tgtatgtagg
     1681 gggtggaaca acattgatta atgaaaatga attactaaaa actctagaac tttgtaaaaa
     1741 acttttcaat atcaaagaaa tttcttgcga aagcgatcct aatcatataa ttcctgaaaa
     1801 actctctatg tttaaaggta taatcgatcg tttaagctgt ggaattcaaa gttttgatga
     1861 tgaaatttta aaaaaaatag caagatataa taaatttggt tcttctaaac aattacaaga
     1921 aaaaatttca aaagctttgg gaattttgcc aatttttagc cttgatttaa tttttaattt
     1981 cccctcacaa acagaagaac agcttttaaa tgatttaaaa atcgctaaaa atttagctcc
     2041 tcaacaaatc acaacctatc ctttaatgaa atccaatcta accaaagaca atatagccaa
     2101 aagtcttggt gttgaaacta aagataatga atttaaatac tatcaaatga tacgaaattt
     2161 tttcaaggat tatcagcaaa ataatggctg gagtttttct ttagaaaaaa atcaactcaa
     2221 tgatgaatat gtaagctctc accatgaata tttaggcgtt ggaagtggag cttttagctt
     2281 tttagatggg gagttgctta tcaatgcttt tgatttaaat gattatgcaa agatgataca
     2341 agaaaaacaa aatgccaata tagcaaaagc gagttttaca cgaaaagaga ttatcaaata
     2401 catattttta actgaaatgt ttgcagggaa aatacaaatt gataaattca atcaaaccct
     2461 taattgtgat cttgaaaaag aactcttcaa agaactttta ggacttaaaa taagcaatgc
     2521 tatcaaaaaa gaaaatggcg ccttaatcac aagtgaattt ggacagtatc tctttgtggt
     2581 cttaatgaag gatttttaca caggaatgga tcttgtgcgc gcggtattta gagatagtaa
     2641 gcgcttaaaa aataaagatt ttatcaatat aatgaaagaa aatataagtt ctatttaatt
     2701 tctttttttt gaaattaaat agaaatgaaa attaaaacgg acgaatcacc atcattaaag
     2761 caatgataat aaacattaaa gtaggaaatt cattataaat tctaaaatat cttccgcttt
     2821 ttgtagaagt atcattcgcc aaagctttta agcaaaaata attatgtata tgaaaaatga
     2881 ttaaaagcgt agcacaggta agttttgcat gcataaagcc agaacccacc atcaaaactt
     2941 ctttatgagc atgtaacatt aaactcccac taataaccgt tgctatcatc gctggatttt
     3001 gtataccaaa ataaagtctt ctttcttgta tctttacaac atcaacaaaa cctttattgt
     3061 ttttattttc tgcatgatat acaaacaaac gaggcaaata aaaaagtcct gccatccaag
     3121 aaacaaatgc taaataatgc acccatttaa tccaaaaata atactcatta atccattctg
     3181 tcattttttt ccttttttat aaaaatttct tttattaaga ttaaggcaac gcttatgttt
     3241 atcatcacat ctgctacatt aaaaatagca aaatgaaacc atttatgcca aaaaaacata
     3301 tccactactc ccccgtgtat aaaacggtca agcaaattcg aacaccccgc ccctagcatc
     3361 ataccaaaag ccactaaatg ttctcttaag aattgttttt gccacaaaag gtatataaca
     3421 agcgccaata tcaaggctaa atgtaaatat tttaaataat gctctaaaaa actaaacata
     3481 gaaaaagcaa ctcctgtgtt tagagcataa gttaaatcca aatactcact ttgccaacgc
     3541 aaacccgata aagttaaaga ttttacccac tgatcaaaag caaaaactgc aataaaaact
     3601 aaaatgaaga tcaagatagt tttatatctt ttaaccattt aatgctttct tgaaaaattc
     3661 aactacattt ttcatttctt tttctaaaat tttagcatct ttagcttcta gtaaaagtct
     3721 gatcaaattt tctgttccag aatagcgaaa taacacatta atatttttat tttccaaatc
     3781 ttgttttaat tccttcaaac ctttaatttt atccaaatct tttttttctg aaattttaag
     3841 attggttaaa agttgaggat aaggtttgat ttgtcctaaa atagtacttg cggacttttt
     3901 cttgcaaagc atcaaagcac taaattgcaa agctgctata agaccatcgc ctgtttttgc
     3961 ataatcgcta aaaataatat gcccactttg ctctccgcca aagtttccac ccctaacttt
     4021 taatttctca agtacatatt tatcgcctac attacaagta tcgagctcta tgccatgtcc
     4081 atttaaaaat tctttcaaag ccccattgct catgatagta gctaccacac tggattttaa
     4141 tttgccctgt tcttttaaga aaagagctaa aactccaagc aggctatctc catttgctac
     4201 ttcacccttt tcatctacca ctaccaaacg atccgcatct ccatcaaaag caaaaccaac
     4261 atctgcacgc aaacgcttta cttcagcggc taaatttgaa ggatacaagg ctccacaatt
     4321 ttcattgata ttaagcccat taggtttatc actcatcact ataacttcag ctcccagttc
     4381 tttaaaaaca gtcggagcta ccttataagc cgctccatga gctacatcta aaactacacg
     4441 caatgatttt agagttaaat ccttagggaa ggaattctta atagaaacaa tatatcttcc
     4501 tataacatca tcaattcttt tagcttggcc aattttctcc atatcaactt tagagctttg
     4561 gataagctta tcatcataat aaatttcttc aatctttttt tctatatctt cgctaagctt
     4621 attcccatgt gcatcaaaaa atttaatccc gttatcataa taaggattgt gtgaagctga
     4681 aatcataata cccgcatcac aacgcatatc ttcagttaaa aatgcaattg caggtgttgg
     4741 catagggcct atttgtatca cattatatcc tatagaagta agacctgaaa caatagcatt
     4801 ttctatcata taaccacttc ttcttgtatc tttacctact aaaatattat ttgtaacact
     4861 cttatcttta aaataaattc cagcggccat agcaagacgc atagctaaaa aactatctaa
     4921 aaattcgccc gcttttccac gaacgccatc tgtcccaaaa agtttcatca ttaaaccttt
     4981 ctcaatgaaa ttctagaaat tatagcaaag ctaggataaa gaaatttaaa caaaccctaa
     5041 aaagatttag ggtttgataa gccttatagt tcaggctttg gagttttttc tgtagaaaca
     5101 gggagttgag gataaaccac tgctggttta gttccagtta aagattttaa gaaagtttct
     5161 atactttttg cctctttatc agaaatttga atgccaagtt gcacactacc catttcttta
     5221 attgcatcgg ttaatttcca tatcgcacca ttgtggaaat atggagctgt ctcaactaca
     5281 tttcttaaag ttggagtttt aaccatacca ttttcatctc ctttaaaatc acccaaattt
     5341 gcaaatttat acttacctgc aacctcaaat gcttgcatat ttccacctaa attcacacca
     5401 ttatgacaag ctacacaacc tttgtcaatg aaaagtttta aacctttttg ctcctcttta
     5461 gttaaagctt tttcatctcc atttaagaaa ttatcaaagc gagatggagt gattaaagtt
     5521 ctttcaaaat ttgctatcgc atcagcaata ttgtcaaaat tcacaccgct tttgccataa
     5581 attttcttaa attctttaac atattcaggt aaagaagcga ttttttctac agctaatttt
     5641 gctggagttg ccatttcagc ttcagattca ataggtcctt tggcctgatc cgctaaagtt
     5701 cctgcacgcc catcccaaaa ttgagtcgtg tttaaaacag cattatatac agttggggaa
     5761 tttaaatgat gagggtttgc agtccattta tgtcccactg ccgcactaat accatcagct
     5821 ccaccaagtc ctagattgtg acaggtatta catgaaataa ttccactttt tgaaaggcga
     5881 ggctcaaaat aaagtttttt accaagctca actttatcaa gagtaaattc agtagccttt
     5941 actccatttg ctttcaaaat ctcatccacg cctttttgat cttttggtaa ggcaactaaa
     6001 cctgaatttt tagcctcttc tataagactt tgagcattta aacttgaaaa agcaactaat
     6061 gatgcaatca ataacgattt gactttcatt tacaaactcc tttactttta gatataaact
     6121 taaactaaat aatatagctt tattacttaa atatttataa aaattattaa ataatattaa
     6181 taattaatta atacaaaata tatcctattt ttttgattta tttatttttt ttgcatataa
     6241 tgcttcaatt atttcttaag gttaataatg gaaaatttaa tcatttatgc aattgcttat
     6301 cttttaggct ctattccttt tggtttaatt ttagccaagc aatttgctca aatcaatata
     6361 caaaatcaag gctcaaaaag tataggcgca accaatgtat taagggttgt taaagaaaaa
     6421 gatccagctt tagctaaaaa acttgcaatc gctactattg ttttagactt tgcaaaagca
     6481 actataccct tactcgtact taaattttta aattatgatt taaatttact ttggactgtc
     6541 gcagttttaa cggtatttgg acattgcttt tccatctatc ttttatttga aggcggcaaa
     6601 ggggttgcaa ctggagcggg tgctatgata gtacttttac ctttggaact cataacagca
     6661 tttatagttt ggtttatcgt gggtaaaatt tttaaaattt catccttagc gtctttattg
     6721 gctttattag tttttatagg aagttctttt atctttaatt atgatatgca aactataaaa
     6781 acgcatgcac ctgtatttat tatagctttt ataatcattt ataaacactt acccaatatc
     6841 aaaagattgg tttttaaaga agaatgcaaa gtcatataaa tatcaaaatg cagtttaaat
     6901 gcattatagg aatattaaaa tttgaacgca agaaaaaaca aaaggtttgt atttatctta
     6961 cagctaaagc aaatgatttt ttagattatg ccaaggtatc aaaaagaatc aaaaaatact
     7021 ataaaaaaga acaatttctt accctagaag aatctttaga atttgtttgt gcgaaattac
     7081 atagaaaatt tccgcaaatt tactatatta aaatcaaaac ttataaacct gaaataatca
     7141 aaaatgcaag agttggtgta aaattaaaaa aattttatta aattttgttt aaagatatct
     7201 aaacatttac ttaaactatg ttatactttt ttaaaaattt cttaatgaag gatataatga
     7261 tgaggatttt agttatagag gatgagatta gccttaataa aactattata gataatctta
     7321 atgaatttgg ttatcaaact gactcttcag aaaatttcaa agacggtgaa tattttatcg
     7381 gtataagaca ctacgactta gtacttgcaa gctggaattt gcctgatggc gatggtgcag
     7441 aacttgtcaa tacaattaag cataagtctc caagaacttc tgtgatgatc atgtctgcaa
     7501 aagcagataa agatacagaa attaaagcac tcaaagctgg agcagatgat tttgtaaaaa
     7561 aacctttaga ttttgatatt ttattggcca gaatagaagc aagacttaga cttggtggta
     7621 caaatgtaat caaaatagaa gatttagtta ttgaccctga tgaagagaaa ataacctata
     7681 aaggccaaga tatagaactt aaaggaaagc cttttgaagt tttaactcat ttagcaagac
     7741 attcagatca aattgtatct aaagaacaac ttttagatgc tatttgggaa gaacctgaac
     7801 ttgttacgcc taatgtaatt gaagtagcga tcaatcaaat acgccaaaaa atggacaaac
     7861 ctttaaatat ctctactata gaaactgtta gacgcagagg atatcgcttc tgttttccta
     7921 aaaaatccta agcattttgc accctttggt gcaaaatttt tatctttata tttatttttt
     7981 atattttatt taagttttgt tattgtataa actaaaaatt atttttaaaa ttttgaaagg
     8041 tgataatggc tcttttgatt actaaagatt gcgtatgttg tgatgcttgt agagaagagt
     8101 gtccggatga ggctatttat gaacatagtc ctatctatgt gattgatgct gatctttgtt
     8161 cagagtgtgt taatgatttt tcagaacctg cttgtatagt ggcatgtcct tatgaatgta
     8221 tcatacctga tcctgataat gttgaaagca tagaagagtt aaaattaaaa aatcgtaata
     8281 gagaatttta atggcaaaaa aaaccgctgt tgtagactta ggatcaaatt ccattagaat
     8341 ggtggttttt gaaaaaactt cgagatatag tttttatact acttgtgaat acaaacgcaa
     8401 agttagactt ggagaaaatg cttataacaa tggcaaaatt cttcaagaag actctatgca
     8461 aagggctgaa aatgctctag ctttttttaa acaatgtgcg ctcaaacaca aatgtaaaaa
     8521 aatattcatt ataggtactt cagctttaag agatgctcca aattctaaag attttattaa
     8581 aagaattaaa gataagctaa acttaaatat tcgatgtatt gatggaaaaa acgaaagtta
     8641 tcttggcggt cttgcaacct taaatttatt aagtcctttt aaagatggca ccacacttga
     8701 cataggtgga ggttcaagcg aactttgtct tataaaaaac aataaaatca tctcttgtat
     8761 ttcattagac ttaggaacgg ttagattaaa agaattgttc tatgataaag gtaaagcaga
     8821 tgctttagat gattttatca aacccatttt agaacaaatc ccttctgaat tttgcaatca
     8881 aaatctcatt gcaataggtg gaagtttaag agccatttca aattccatta tgcaaaaaaa
     8941 ctcttatccc ttaaaaaata tacatgattt tagatatatg ctcgaagatg aaaaagagca
     9001 tatcttgaag atttttaact ctaaagcaga tgcattgatt aattttggta tcaaaaaaga
     9061 tcgttttgat actattaaag agggtatttt tatctttcta aaaatagcag aaaaactcaa
     9121 agccaaacaa atcattacta gcggggtagg cattcgcgag ggtgtgtact tgcaagattt
     9181 gctacgccct aaacacactt ttcctgtaaa ttttaaccct agtttaaaat ctctacaaga
     9241 tagatttctt caaggaaata taaacaacaa aacaccttat ttttctatac aaatttttaa
     9301 agtcttacag ggtcttcata aaatccatga aaaatatcaa caaagcctat taaatgccgc
     9361 aaaactttgt catttgggtg aatatttgaa tttttacttt gctaatgaac actctgcata
     9421 ttttatttta aatggattaa attatggctt ttcacaccaa gaaaaagtgt tgattgcaac
     9481 tcttattaaa ttaaatggca agaaggtaaa tccttataat cttgagccct atagacagct
     9541 tttgccaaac acgcatatca tttcttggtt gaattttatt cttagcttag ctaaaatact
     9601 aagcacaaat gaaaataaaa tcgaaattgc ttttgtcaac aatacacttt atatttatag
     9661 tgagtcaaaa attcttgatc tacctaaaga tgaactgaaa aaaatcacca aaccagccac
     9721 gatagcctta gctatcaatc aaaagcctta agatttttta ttcttttggc gttgctctat
     9781 aagactttgg atacgctttt tattctcttc aaagaaagaa tcaaaatttt tttcagattt
     9841 ttctgtaacc tttggctcat aatctggaat ttcaatctct tctaatacaa tattagaatt
     9901 gcccactatc atagtataac gcttgcttgc gtattcaaaa actatcaatt gattattttt
     9961 atctaaaaat ctttgaaata ccatacgaaa atctctagaa acacccgtat ttttaaaagc
    10021 taaagttctc ttaagccacc aaagcactat aagcaagaca aataaaacca gcattactaa
    10081 aatgtaattt gtataatcat agccttctaa gcttgtcttt ttagaattta aaatcggctc
    10141 ttcatttgta cttaaattgc tttgttcagg atttatactt tctttacctt gctgaaccgc
    10201 tcttatccta actccaaatt tatcattaat agagcttaat tctaaggaga ttggctcttt
    10261 gttctgtagc atgatatatg tattattatc tttagaactg atactgatct tatccacaag
    10321 tcctgaattt aaacttttga gttcttcttt gctgtatttt aaatcactca aggttaaaag
    10381 agtaagattt ttttcttttt tctgagaaat tttaccccca taagcactat caaaagatag
    10441 cattaaatct actctatcat ttctatcgta aatattataa ctgattaatt ctacagcaaa
    10501 aaggggcagt gcgagtatgc ttaataataa aactttcatt aaatttcttt tttgaaatat
    10561 tgaagtacgg ttttagaatc tagaatttca ttaattctaa ttgctaaatt tttctcataa
    10621 accataactt cgcccttacc aaagatgcgc ttattgatat acaattcaac actttcccca
    10681 gcaggttttt caagatcgat aaccgaacct acttcaagtt ttaaaagttc ggctacactc
    10741 atattggtag tgccaagctc actaacaaaa tctactgtga tatctaagat atcttcataa
    10801 gactgcaaaa gtccgtgacg atctccaaaa tcaatgtcac tgcccattat ttacaatatc
    10861 ctattctaaa ataatgattt tcaaagctat aagttaaaga ttcatctaat atgatagatg
    10921 aaaaatcaac cctacctaaa tactctggta tgccaagttt atactcatca tctcccttag
    10981 catcattgag taaatttttt gcatagccta tgatttgatt ggcgcattct ttacttaaat
    11041 cacaccaatc atcttcttta aatttttcat cacgaactaa aacattagca attgtttgta
    11101 gaaattcttt tggaaaaaat aaataaaaat gatattctct accacttttt tccattacag
    11161 gaatactggc tccataaagt tcacctacta tatcttcagc cttttcgata tgaagtctta
    11221 ggatatgttc aaaaaaatgt gttattgaat attcaagaac tttcaacata atatcacctt
    11281 tataaaaaac ttaattaaaa attatagtaa atataaaata aaaatatgtt ttaaaaaatt
    11341 atttttcaaa aatttcttct acacctttta aaatttgatt tacatcattg cttgcaaaaa
    11401 gctttactat attcgttcct actatcactc catcggctag tttacgcata tttcttacat
    11461 ctgtgttatt ttttacccca aaaccaacat aaataggcag ttgtgtgaaa gatcggattt
    11521 cttgtatttt ttcttgcaaa agtttattat ccgcactttg tcctcctgtt atgcctacac
    11581 tagcaagtaa ataaataaaa cccttagcat tttttacaag ttctttaaca cgctctttag
    11641 gagttgtaat gcttacaaga gtaatcaaag ctatgtcata cttttgacat tctttataca
    11701 aaggcttact ttcttcataa cttagctcag gaactatcaa agcagaaatt cccaaagcct
    11761 tggctttttt aacaaaattt tctaagccgt aggaaaaaat taaattataa tacaccataa
    11821 aaacaagggc tttttttgtt tttattttgg ctaaaagctc aaatatttta tgaatgtctg
    11881 cgccttgttc tagggcaatt tttgcagcat tggcgatgat ctcaccatca gcaataggat
    11941 cactatatgc gattcctaat tccaaaacat cgatcgaact ttcatccaaa cgctttaaaa
    12001 actcttcact aatttttaaa tttggatagc ctaaaaccat ataagctaca tttgccttat
    12061 ccttgtaaaa ttttgtaaaa tcaaccataa attgttcctt ttttatattc tctaatcgtt
    12121 tgcatatctt tatcgcctct acctgataaa ttaaccacta tcacgctctt tttgtttaac
    12181 ttaggacaaa gtttttccaa aaatgccaaa gcatgagaac tctcaatagc agggataatc
    12241 ccctcttcct tacaaagcat ttttaaagcc atcatgcatt cttcatcggt aatggcataa
    12301 tattttgccc taccgctttg agataaaaaa gcatgcaaag gaccaattcc tggataatca
    12361 agtcccgcag aaacactatg cacaggtaag atgtttccta attcatcttg caaaaccttc
    12421 gttttcatac catggataat acctgttttt cccttggtta aagttgctgc atgataaagg
    12481 gtgtcaacac ccaatccccc tgcttcaatt ccaataagat ttacactctc atctttgata
    12541 aattcgtaaa aaattccacc cgcattactt ccacctccta ctgcagcgat gatataatct
    12601 acttttttac ctaatttttt aagttgactt ttgcattctt ttcctataac actttgaaaa
    12661 tgtgtaacca ttttaggata aggataaggt cctacagcac ttccaactac ataaaaaaga
    12721 tttttaatat cccccaccca agcttggata gcagcagttg tagcttcttt taaggtttta
    12781 agtccacttt gtatagcatt aaccttagct cctaaaagct ccattttata aacatttaaa
    12841 gcttgtcgtt gcacatcagt cgctcccatg taaatttcac actcaagtcc taaaagtgct
    12901 gcagcagtag cagttgctaa tccatgctgc cctgcccctg tttcggcaat gatttttttc
    12961 ttacccattt tttttgctaa aagtgcttga gctatagcat tgttgatttt atgtgctcct
    13021 gtatggttta aatcttcacg cttaagataa atttcatgtc cgtatttttt acttaaattt
    13081 cgagcaaaat aaagcggagt ggggcgtcct acataagtag ttaaaagccc ttgaagctct
    13141 tttttaaagg ctttatcttg tgcaaatttt aaaaaagcat cttcaagctc atttaaagca
    13201 aacatcgcac tctcaggcaa aaactgccca ccaaattcac cataatacgc ctttttcatt
    13261 ttctcatctc ctttaaaata tacttgattt tttccacatc ttttaaatga ttttcctttt
    13321 ctatctttga atttaagtct atgatttttg gttttaaact taaagcttca ttgatattat
    13381 gagttcctat gcctcctgct aaggcaaaat cttttttaaa gtctttcaaa agatcccagt
    13441 taaaactttc cccattgcct ccatgaaatt ttcccttagt atcaaataaa attaaatccg
    13501 cataaatatt ttcttccaat tccaaacgat cccctacact taaaacctgc caaacaaaaa
    13561 ctccactttc ttttaaggtt ttaaactcaa attcactgat ttttctatga atttgcactc
    13621 catcaagctt tgcttgtttg attgctttta aaataaattc caaattttca tcgacaaaaa
    13681 ctcctacact ctttttaaat cccgcatgga tgatatcgct taaattcatt gcttgttcta
    13741 aactaagctg tctagggctt tttgcaaaaa taagccccat gaaatcgaca tttaattcag
    13801 cgatttcctt ggcattattt tcatccttaa tgccacaaat tttaagcttt gtcatttaga
    13861 ctcctaaaat actccatcac cttgccagaa tatatagcct ctaaaataat atcttttgct
    13921 tttaaaggtg ttgaaacttt gttggctgta taaagtgcga acatagaatt taaaaccacg
    13981 atatcaaatt tagccccttg tatttttcca cttaagatat cttttaaatc cttagcattt
    14041 tcataagcat tgccacccat aatctcacta tgaaaagctc gcttaaaacc aaattgttcg
    14101 ggtgtaacgc cgtattcata aatttcaccc tctcttactt caaaaatctt tgtttcatcg
    14161 caaatactga tctcatccat gccatcattg ccacgcacca ccaaagctct ttttcgtcct
    14221 agtgatctta aaacttcagc caaaagctta tgcacaggtg catgataatt tcccatcatt
    14281 tgatatttaa gctttaaatt aggatgaagt aaaggtccta aaacattaaa tacagttctt
    14341 atgccaagct ttgccctaag ctctcttagc tcacctacta aaggatgaaa atacggggca
    14401 tgaaaaaagg ctaaattttt attttgcaaa tcatttaaag cacattctaa attatcagga
    14461 atttttacat ctaaagcatc taaaacatcg gtgcttccac ttgaactaga aatcgctctg
    14521 tttccatgtt ttgctacttt tacccccaaa gctgctaaaa taaaagcact tgctgttgaa
    14581 acattgatac ttttaaaatt atctcctcca gtaccacata tatctatcat atcgctttca
    14641 tcactaaagg ttttagaata acgcaaaatt tcacgcacaa gactgcttaa tgatttttga
    14701 ttgagggatt tttcactgat taaaacaagt aaagcagccg cttgtaaagg ctcataatcc
    14761 ctgctcataa taatcttgca aatttctgaa aaatcttcac tttctaaata atgattttca
    14821 ctcatttttt gcaaataaaa tccaagagta tgttttttat cctgaactgc tttttcttga
    14881 tttaaaaaat tagcaaaaat tttgattccg tattcgctaa aataactttc aggatgaaac
    14941 tgcacgccaa aataaggtaa agttttatgt tttatagcca tgataacatt atcatcactc
    15001 aaagccaaaa tttcaaaatc atcgggcaaa tttttaactt ctaaagagtg ataacgcatc
    15061 acacttacct catcttcaaa atctttaaaa attgtatctt tattataaat tttaattaag
    15121 gaattttttg catgcatagg gttttgcaat ttagcaattt cggccttaaa actaaaaccc
    15181 aaagcttgat gtcctaagca aattccaagc gtagggatgt tgagtcgtga tttaaaaatt
    15241 tcaagacaca ctccactatc ttttgggtgt tttggaccag gacttaaaat gatatagttt
    15301 ggatttaaag ctttgatttc atcaagagtg attttatcgt ttcgaacaac taaaatttca
    15361 cccttgtata cattttcgag catggatttg atattgaaaa caaaagaatc ataattatca
    15421 attaaaagta tcatcttaac tccttttagc cattttttca aaacttacta ataaagcttt
    15481 acgcttagcg caaatttctt catattcttt ttgtggatca ctttgtaaaa ctatacccgc
    15541 tccacttgct ataaaagctt tattttcttt aaaaaaagcc gatcttatga taatagctaa
    15601 aaccacatct tcattaaaat ttaaaaaccc aacagcgcct ccataaactc ctctgtctaa
    15661 attttcaagc tcattgataa tttctaaagc tctaatcttt ggggcaccac ttaaagttcc
    15721 tgctggaaaa accgctccta taatatcaaa aatattggct tgcttatcca tcgtcgcata
    15781 aacttcactg actatatgca tgacaaattt atttcttgtt atactaaaaa gattttcaac
    15841 tcgcgtattt gtaccgaatt tagatgcatc atttctagct aaatcaacaa gcattttatg
    15901 ctcactcaat tctttttcat cgcttaaaag atctttttct aattttaaaa tatctgaatt
    15961 ttcatccaaa tttcgagtac ctgctatagg agctaaaaaa atttctttgt tttttatttt
    16021 cagtaaaaac tctggagaag aacccaacac aaccccatat tgagtcggaa aataaaacat
    16081 ataagcacta ggatttaact cacttaaagt ttcataaaat tcaaaactat caaaattatg
    16141 ctctatgcaa agctgcttgc ttaaaaccac ttgaaaaata tctccgctta aaagatattc
    16201 cttggctttt tccacacctt ggataaaatc tcttttttct tcttgaaaat cctgcaagat
    16261 tttatattcg caaacttttt tatcgaaaac aaaatcttct tttaaaaaat caaaatactt
    16321 attttctccg tatttaaaaa acattttgct agttttttca taaaccaaat aagctttagc
    16381 attggcaaat aaaaaatttg gaaaatcata atttttattt tcatttgagg gtaaattctc
    16441 aaacaaagaa ataaaatttg cactaaaaac accaaaaaat ccagaatatt tgcaaatttg
    16501 ctcccttgaa gcattttcat aaaatttcgc ctttaattcg ctaagagtga tatccttagc
    16561 atcataaaaa tcgcaatcaa tacctataat aaccctagta gaatcttcag caaagtaaga
    16621 agaaggaaat tcttttaaaa tttgcctata atataaattt gctttcattt caagcataat
    16681 acaaccttta taaaaaataa aataaaaaaa tattgagaag ttaaaaaaga agcttagaag
    16741 cgccaaaaac gaagagtgtg tgttgatact aaaattaaag aattatttaa aaaatcgttt
    16801 ttattcatct tctacctttc aaaaaattaa gcctcatttt aaactatgat gacttttatt
    16861 aattttagag aaaaaaacat aaaattatcc tttaatattt atttcatttt caaaaaaata
    16921 aatccatgta actctgtgga aaatattttg tcaaaataag ccttgtaaaa cattataaaa
    16981 aattttaaaa ctaagataag cttgataaga taaaattact ccttatttaa tcaacaaacg
    17041 atataaattt aggaaaaagt atgaatttta cagatttgcc ttatatcttt ataggtatat
    17101 tttcaggtat tacttcagga ctttttggca taggtggggg aatgattatc gtgccctcaa
    17161 tgtttgcttt aggagcaagt gctcatcatg ctattggaat ttctgtatta cagatgatct
    17221 ttgcggccat ttttggttct tatattaatt ataaaaaaaa gaatttaaat ctcaaagatg
    17281 gtattgttat aggactgggc ggtcttttgg gggcaagttt tagtggaatt ttattacaag
    17341 ccttaagcga tgtagctctt actgctatat ttttaggagt aagttgtgta ttttttatca
    17401 aatatgcctt tggcatcaaa gaaagtgttg taaaaagcca taaaagcgta tgggttaaaa
    17461 atggaatttt atttatagcg ggagctttta cgggaatttt tgctatttct ttaggtatag
    17521 gcggagggct tttaatcgct ccaattttag cttatttctt aggctatgat agcaaaaaag
    17581 tggtttcgct ttctttattt tttgttattt ttgcttcaat ctctggtatc atctcttttg
    17641 caaattcagg tgtaattgac gctgaagtta tccacaaagg tgttttagta ggttttgctt
    17701 ctatgatagg tgtttttata ggtataaaaa tcatagaaaa aatgcatatt tcagctcata
    17761 gaaaaatttt actttgcgta tatgctttat ccatacttgc aaccactctt tctctgctta
    17821 gaaaacttgg aattttagca ttttaatcca ttaaaatgct aaaaaattta aaaacataat
    17881 ttttatattt ttatgttaaa atgttaaatt tatttaatgc ttaggaaaaa cttatgaatg
    17941 atacgataaa aatcattggc gcaaaggaaa ataatcttaa aaatattcat cttgaaattc
    18001 caaaaaataa actcattgtt tttacaggat taagcggtag tggaaaatca acccttgctt
    18061 ttggcacact ctatgccgaa ggtcaacgcc gttatataga aagtttgagt gcttatgcaa
    18121 gacaattttt agacaaggta ggcaaacccg atgtggataa aatcgaaggt ttaacccctg
    18181 ctattgcgat tgatcaaaaa accacttcta aaaatccgcg ttctacagtc ggaaccatca
    18241 ctgaaattta tgattattta agacttttat atgcaagagt gggcattcag cattgccatc
    18301 aatgcggaca aaaaatctca tctatgagtg caagtgatat agtaggagaa attttaaaat
    18361 ttccaaaagg agctaaaatc atcatctacg ctcctttggt gcgtgaaaaa aaaggaactt
    18421 atgcggattt acttgaaaat ttgcgcaata aaggctatgt aagagcgcaa attgatgggg
    18481 ttttagtaag acttgatgaa gatatagaac tttcaaaaac taaaaaacat acgataaaac
    18541 tcgtcattga tagactcgaa atacaagaag atctactttc tcgccttgca agcgatatag
    18601 aaaaaggttt ggaagaaagc tttggagaaa tcgagataga agtcttaaat cccgatgaag
    18661 taggacttaa taagcactat cactttagcg aacactccgc ttgctttgct tgtaaaattt
    18721 cctttgttcc tcttgagcct ttaagttttt cttttaactc tccaaaaggg gcttgtgaag
    18781 cctgtgatgg acttggaatt cgctataccc tagatatgaa aaaaatcatc gatgaaagcc
    18841 taagtcttga aaatggcgcg gtaaaaataa tgtatggatt taacaaaagc tattattata
    18901 aatttttaat tgctttttgc gagcaaaatg aaattcctat taaactccct tttgctgaac
    18961 ttagcgaaga acaaaaacgc cttgtgctat acggaaatgc aaaaaccatt gacttttttt
    19021 ggaaaagaaa tcgcctcaaa cgcacctttg aaggtgtggt aaaaatggct tatgaaatgc
    19081 taaaagatga aaaagactta gcagaataca tgagtgaaaa aatttgcaaa gattgtgcag
    19141 gtcatcgttt aaaacctgaa agtttagccg taaaaatagc ctctaaagga ctaggcgaaa
    19201 ttttagatat gagtatagaa gatagcacta gcttttttgc aaataagaaa aatttctctt
    19261 atttaagcga gcaagaaaga cttatctctg aacccatatt aaaagaaatc aacgaaagac
    19321 ttttcttttt atatgatgta ggactaggct atttatcttt aggacgcgat gcaaggacga
    19381 ttagcggagg tgaggcacaa agaattcgca tcgcttcaca aattggcagt ggtttaagtg
    19441 gggtgatgta tgttttagat gaacctagta tcggacttca tgaaagagat acagcgaaac
    19501 tcattaaaac cttaagaaat ttacaacaaa aaggcaatac tctaattgtc gtagagcacg
    19561 ataaaatgac tatagaagaa gctgatttta tcgtagatat tggcccaaaa gcaggaaaat
    19621 ttggaggcga agtggtattt gctggaactt ataaagaact tttaaaaagc aaaagtgaaa
    19681 ccgcacttta tatgaacggc aagaagcaaa tttcacagct tcaaaacaga gaacaaaaag
    19741 aatggctaga acttaaaaat gtaaatatca ataatatcaa agatctaagc gtttcttttc
    19801 ctttgcaaaa tttagtcgcg atcacaggtg tttcaggatc tggaaaaagc tctctcatac
    19861 ttcaaacctt actgcctttt gcacaagaag aattaaaccg cgccaaaaaa gtaaagaaat
    19921 taggtggggt gcagattgaa gggcttgaaa aactagataa ggttatttat cttgatcaaa
    19981 gtcctatagg acgaaccccg cgatcaaatc ctgctactta tacaggtgcc atggatgaaa
    20041 ttcgcaatct ttttgctgct accaaagaag ctaaaatgcg aggctataaa gcggggcgtt
    20101 tttcttttaa tgttaagggt ggaagatgtg agaaatgcag tggcgatgga gagattaaaa
    20161 tagaaatgca cttcttgccc gatgtaatgg tggtttgcga tacttgccat ggcaaacgct
    20221 ataatgatgc cacactagag attaaataca aaggtaaaaa tatcagtgaa attttaaata
    20281 tgagcgtttt agaagcaagt gaattttttg cagctgtgcc aaaaatcaaa caaaaacttg
    20341 ataccttagt aaaagtcgga cttgattatc ttaccctagg acaaaatgca acgactttaa
    20401 gtgggggtga agcgcaaagg ataaaacttg caaaagaatt aagccgcagt gacacaggaa
    20461 aaacgcttta catacttgat gagccgacca cagggctaca ttttgaagat gtcaataaac
    20521 tcattttagt tttacaacac ttagtcgatc ttaaaaattc tgtttttgtg atagagcata
    20581 atttagatgt gattaaaaat gctgattata tcatcgatat gggtccagaa ggcggagtaa
    20641 agggtggaaa aatcattagt acaggaagcg tggaaaaagt tgcaaaagat cataagaaaa
    20701 caaaatctta tacaggatat tatttggatt tagagcttaa aaacgcaaag agttaaaatg
    20761 acacaggaac aaaaaatatc attttttaag attaaaagat taagtattta tatatttttt
    20821 tgtgctttat ataatttttt ttactttttt tcttatgaaa atgtgggaag tttacattgt
    20881 gaatttcttt gtatcagcgg tagattttta tgcttttttt cttggattta tatagttctt
    20941 gcttttattt ttatggtggc aagaatttat tttttatttt cttctaagaa aattttaatt
    21001 tattttttgc ttgccattat aagccttggc tcatcttttt ttcttttgga aaataaaatt
    21061 ttatttttag ggcttttagc tttatttttc gttttttatt ttttattttc actcactctt
    21121 gcttcgcttt ttaaagaagt gaaaatgtcc ttttattttg tgtttttatg tatgctttta
    21181 gcatttttat tttttgagaa attaagcttt ttatttttct ttcttgcttt acatttttta
    21241 acttttgctt atgcttttga taggtatgaa actttaaaaa agctgtattg agttcaattt
    21301 taaaggaaga aaatgtcaaa tttaaacttt catcaaatgt ttgaaattca aagacaaaat
    21361 gattttaaaa gtatcaaaaa gcttgcgtgg gtagttttta taagtttttt actttgtgtt
    21421 tgttttcagt ttttacccat tattcttgat tttgcctatg atttaaaatt gttgaaattt
    21481 aattctaaca ctaatatttt agctatggtt tttaatgcaa tttttttaat ttcttatttg
    21541 attatgattt taaaacttta ttttgtaagt caaagtaagg ttttattgat cagttttttt
    21601 atagctgcat ttactcaatt tatcgcttta ttaagcttga attatcttat tgctagtcct
    21661 gttgttgata agatattacg tatttttcta tatggctttt cttttttatg tcttgcaata
    21721 gccatttttt gtacttttat attttttaag actttaaaaa ctttatgtga aaataagatt
    21781 tattttaaac tttgttttat tttcaaaagt gcgattttga taattatcta tatacttatg
    21841 tttgttctaa tttatagcga gcattctctt gctttaatta tcgcttattt tatgattttt
    21901 ttctttgcag gcttattatt taccatttat tacgcactat ttgctttcgc gcttagtaaa
    21961 aaccaaaata tcaaattatc ccaaacttaa agcttatatc caatgaaaaa gaaaatattt
    22021 aaatttagta ttttatttac catttttata agtctaagcc agagtacttt ggtttttatt
    22081 tttaatcatt atttaattat tgattatagt gcttatgaaa cactgccaca aagctttgca
    22141 atgctaaatt tagccgatca aaaactttat catttaacgc aaaatttacg ctttttacat
    22201 tctattttag cttttttatt aataatatca tttttctttg tgcatttatt tttcttttat
    22261 atttccagaa aagaaaaatt tataccttat tccttttttt gttttgtgct tatggtaata
    22321 agtgctattg ctaatttact tgaaggtata gagcaaaaag aaagtatttt ttggtattac
    22381 aaggcatttc ttgatgttgg tgtttgttta atttatcttt tgtttttaga taaatttttt
    22441 caaagtcacc tttttaaaat cttttttgta tgtgcttgct tgtgtacaat tttaacaaaa
    22501 tttaaattta tggattttac cacgcctttt gttttgccta tttatctttt tattttattg
    22561 attttaatgc gtaaaaagag ctttaatgtt tgatttttta tataatgata ttagctactt
    22621 agggcttttt atcgtatgtt ttctttcaag cacgcttttg cctcttgcaa gtgaagcctt
    22681 tgttgtagct tttataaaac ttgattttaa tgctcatttg gttttattta tagctacttt
    22741 aggcaatacc ctaggaagct taagcaccta tgctctagcc tatcttggca aagaaaaaat
    22801 tttagaaaaa tatttttcca aatctttaaa aaagcttgat aaattcaatg caaattttac
    22861 taaatttgga agtctttatg cttttttaac ctttttaccc ttaataggag atatctttgc
    22921 tttaggcctt ggttttgcaa aatacccttt catcaaagct tgttttttca taagtcttgg
    22981 caaattaagc cgctatattt ttataatttt tatcgctaat tctttataaa aatcatcaat
    23041 ctttaaagtg aattttggga taataattta aaacccacta agaaagacaa ccatgaaaac
    23101 tttaactatt atcgatactt ttggcttctt ttttcgtctt tattatgcac tcaaaggatt
    23161 taaaaattct caaggacaag ctagtggaat gattagcggt tttgctaatt ttatctatag
    23221 tcttaaaaac gaatataaaa gcgattatat tatttttgca ctagattcta agggcaagac
    23281 atttcgtagc gatattgatc caaattataa aaaaaatcgc accccgcccc cacccgaact
    23341 tttggaacaa attccaattt gtatagaaat gatagaaaaa atgggcttta tgagtgcctc
    23401 ttacgagggt tatgaggcag atgatatcat cgcttcagtg gttaaaactt gtaaagataa
    23461 agatattttt gtacgcatta taacacagga taaagatctt tatcagctta taaaagatgg
    23521 taaaacaagt atttatagcc ctatttcaaa aaatgactat gatgaagaag cttgctttga
    23581 gaaatacggt gtcaaacctt atcaaattaa agatttttta gccttatgtg gagatagctc
    23641 ggataatatc ccaggagtta aaggcatagg agcaaaaggt gctaaaacat tgcttgatga
    23701 gtttggaagt atcgaaggca tttatgaaaa tttgactcta gtacgcaatg aaagaagtcg
    23761 taaattgctt ctagaaggta aagaaaatgc ttttcttagt aaaaaacttg cttctttgta
    23821 tgaggattta gaagtaagca acttgttaga aaaagctgat tttcctcaag atgagcctct
    23881 tttaaaaatt cttgaaattt tagagcatta tgaactcaat gtcttactta aaaaacttcg
    23941 ccaaaacccc gataataaag ataaaaattt aggctttaaa gccactctta tccaagatga
    24001 agacaaactc tttgaaattt taaattctct tgaacaagaa agtatcatag cttttgatac
    24061 tgaaaccaca agcattgata ccaaagaagc aaaaattgta ggatttagtt tttgtatgag
    24121 tgaaaatgaa gccttttatg tacctcttac tcataattat ttaggtgtgg gtaagcaagt
    24181 atcattacaa agcgctaaaa aagctataga gcttattttt aaacatttta tcatagggca
    24241 taatcttaaa tatgatttta aaatcataga aaataatttt aaactctctt tgccgcaaaa
    24301 atatgctgat actatgattt tagcatggct taaaaaccct tccttaagag tcaatatgga
    24361 tgatttggct ctaagacttt ttaattatga aaccttacat tttgaaagtc ttgtaaaaaa
    24421 aggagaaaat tttgcaagcg tagagcttga aaaagcttgc aagtatgcag ctgaagatgc
    24481 ttatatcact ttaagatttt atctttattt tttaaaaaat cttgaacctc atttgcttga
    24541 tcttgctaaa aattatgaat ttgattttat taaaattatt atgatgatgg aagaaaatgg
    24601 cataaaactc gatacgcatg ctcttgaaat tctcatgaaa aaatttgaat ctgaaattaa
    24661 aattttaagc gaagaaatct atgctttatg tgaagataga ttcaatctta attccccaaa
    24721 acaagtaggc gatatacttt ttgaaaaact caagcttcca agtggaaaaa aaggtaagac
    24781 agggtattct accgatgaaa aagtcttaaa tgaacttctc gataaacatc ctgttatttc
    24841 taaaatttta gattatagag aactggccaa gctttattcg acttattgcg agcccttgtt
    24901 aaaacttgct ttaaaagatg aaaattcaag aatttattcg agctttttac aaacaggtac
    24961 tgctacaggc cgtctttcat ctaaagatcc caatttacaa aatatccccg cgcatggaca
    25021 atatgcaaaa gattataaat cctgctttat agccaaagag ggatttagtt ttatcagcct
    25081 tgattattct caaatcgaac ttagaatgct agcgcacttt agcgaagatg aaaaactttt
    25141 aaatgctttt aaaaacgatg aggatataca tgcaagaacc gctataatga tatttggcga
    25201 gagtaattat gaaacaagaa gtatagcaaa aagtattaat tttggcttga tttatggtat
    25261 gggttataaa accttaagca aaaatctaaa aattgaagcc aacttagcta aaacctatat
    25321 agaaaaatat tttgaaaatt ttactagcat taaaagttat ttcgaaaaag taaaaaatga
    25381 agccaaggct aatggtttta ttagcacctt aagcggacgt aaacgctatt ttgactttga
    25441 aaatgctaaa cccatgcaag tggctatgta tgaaagagag agtataaatt cgattttaca
    25501 aggatcagct gcagatatta taaaatttgc catgctagaa attgctaaaa ttttaaatca
    25561 agataaaagg cttatcttgc aaattcacga tgaacttatc tttgaagtta aagatgaatt
    25621 atgtgaaaat tttgtgaaaa aaactagtga tattatggaa aatatagtaa aattaaaggt
    25681 aaaattaaaa acaagctcaa gtatcgccaa aaaatggggc gatttaaaat aatcaaggag
    25741 tgatttaatg gatctttcaa ccatattagg aatggttctt gcagtaacta gtatctcagt
    25801 aggagatata ctcgagggag gaaatcctct gcatgttatc cacctttctt cttttctaat
    25861 cgttatgcca acggcagctt tttgtgccat gacttcaact cataaaaaaa ttgtaaaagc
    25921 agcctataaa gaacttaaaa tcgtttttaa aggttcaggt gtaaatctac ctgaaagaat
    25981 agctcagctt atcgaattcg caattattgc acgccgagat ggtcttttgg ctttagaatc
    26041 aagaacaaat gaaattgaaa atgaattttt aagaaatgct atgatgatgc tagtagatgg
    26101 aaaaagtttt gaagaaattc atgaaagtat ggaaattcaa accgaacaac ttgaagaaca
    26161 ctataaagaa tgtgcagaat actggataat ctttggtgaa acttgtccta ctatgggact
    26221 tgttggagcg gtttttgggt tgattttagc actgaaactt ctagataatc ctcaagcaat
    26281 ggcagcaggt atttcaggtg cttttacggc tacggttaca ggtattttcg gtgcatatgc
    26341 actttttgct ccttggggaa gaaagatgaa agctaatggt atggatcttg taaaagagca
    26401 aattgtcatt actgaagcta taaaaggaat tgcagaaggt gctaatccta gagatttaga
    26461 agctaaactt tttaacttct taagtcacga tgatccaaga atttcacaat ttgacaaagg
    26521 ttaaaaatgg ctaaaaaaca taaatgccca gaatgtccag caggtgaaaa atgggctgtg
    26581 ccttatgcag actttctaag tttgcttttg gcgcttttta ttgctctttg ggcaatttct
    26641 aaaacaaatc cagctaaagt agaagcactg aaaaccgaat ttgtaaaaat ctttgattat
    26701 actgcaaccc aaaccgtgca acaagaaaca caagatactt ataaatataa gggttctcaa
    26761 gaagaaaaag aagatgaatt gagcaaactt aaacaaatgg ccgtaaatca acaagaagtt
    26821 attaaaaaac ttcaagccgc tcttgatcaa tccgaaaatc aagaaatact taacctacct
    26881 tccaaggttg aatttgaaag aggaagtgca caaatagtat ctgcagatat tcaagattat
    26941 cttaaacgca ttgctcagct tatttcatac ttacctcctc aaatagaaat tgaaatcaga
    27001 ggttatactg acaatagtga ctcagcctta agaagctatg atctaggcta tacaagagca
    27061 gaaaatgttt taaaatatct tatagaaggc ggagttagca ccaaaaatat aaaccttaaa
    27121 agctatggat taaatagtcc catcaatgga aatccacaag ctttagaaaa caatagagtg
    27181 caaatttatt ttaaagtaga tattaaggat aatgacgcaa aacaatcagt gcttgatctt
    27241 atagaaaaaa gcaaataata aaatttattt gcttaattat ttttcttgac ctgtcctgct
    27301 aaacgacttt tattgttagt attgtaaaca aatccaagta cctctgctac agctttaaac
    27361 atttctctag gaataagatc attaatatca caagccttat aaagctctct cgctaaaggc
    27421 ggattttcat aaacaactac attattatca taagcaacct gttttatacg aagtgccaaa
    27481 aaatctactc ctttagccac aactctagga gcttgttctt ttgttgtatc ataacgaatc
    27541 gctacagcat aatgcgtcgg gtttgtaata accacatccg cccctgcaac atcttgaacc
    27601 atacggcggc gtgctgcttc catttgtaag cgacgaatcc tcccttttac ctgaggatct
    27661 ccctccattt gcttgtattc atctttaatt tcttgcttgc tcattcgcaa gcctttaaaa
    27721 tactgaaaac gcaccaaaaa aatatccaaa acagcaatca ctaaaaatgc tatgattaca
    27781 atagctgcca aaataatagc cctatcccta agccaaatga gttgtccaat gatattataa
    27841 cgctcaacca aaggtaattc ttgcataaat tttaaaagca ctataaaagc tacagtaaat
    27901 actacgccta ccttaagcac gatcttaaca ctctcgacaa gcttttttaa agaaaataaa
    27961 ttttttaagc cttttaatgg attgattttt cctaaattag gcattatagg tttggtcgta
    28021 aaaataaaac caaactgcat aacattacct aaaatacctg cgatcataat actcaaaact
    28081 ataggtgcta gcaaaatcaa aacttcaaaa atgcttttaa tcataatggc ttggataata
    28141 cgcaaatcaa attcaacacc tataaaactt tgataatatc tatatagatt agtaattctt
    28201 tcaccgataa aacccatcat aaaaagtgta atcacaaaac caactattaa agtaacaata
    28261 gctgctgcgt cttgggattt ggggacattg ccttcttttc ttgcgtcttc tattttcttg
    28321 gacgtgggtt cttcagtttt ttcttgatct tcgcctgcca taattagcct aaatttaagt
    28381 ttataaaatt agataaaatt atataaaaaa atgatgaatt ttaattaaag ttaagagaag
    28441 aaattttatc aagaagaaaa gccctttttt aagggcttgt tattatagtt tatcttcgtt
    28501 tttatcaaga tactcagcaa cacctttagg gttagctttc ataccagcat cacctttgtt
    28561 ccagcctgca gggcaaactt caccgtgttc attagtgaaa agcatagtat ctaccattct
    28621 gatcatttca tcaatatttc ttccaagtgg taagtcatta actacagcgt ggcgaactgt
    28681 tccatctgca tcaagcaaga aagaaccacg aagagcaact gcttctgcat aaagtacatc
    28741 aaaatttcta gcaatttgtt tagttaaatc tgcaacaagt gggaatttaa cttgaccaat
    28801 acccccttga tttactggag tgtttttcca tgcaaaatgt gaaaattcat tgtcgcctga
    28861 aattccgatt acttcaatac cacgattttt aaattcttga tatcttttat caaaagcaat
    28921 tatttctgaa ggacaaacaa aagtaaaatc ttttggatag aaaaatacta ccgcaccttt
    28981 tgggcctata tttttataaa gattaaaatc ttcaacgatt tcgttatttc ctaatactgc
    29041 tggagcagta aagtctaaag ctttttttgt aactatcatg tttttctcct aattaataaa
    29101 ttttattgat agcgaaatta tatcgtttaa atcctttaaa gatttttaaa tgataataaa
    29161 tttttgaaaa tattttttat agtattttat attatattat aaatgataat caaaatctaa
    29221 aaattatcaa atatatatat tttttgatta tcaaaattat agttttttaa gaatactttg
    29281 ataaaatgct tagttgaaaa aagtaaattt catattaatc aaaaaggaga caaaatggct
    29341 gtaaaaatta cagatagttg tattgcttgt ggttcttgta ttgatgagtg tccagttagc
    29401 gcaatcgttg acgatgcaaa caatccagag ggcgaagata gatattatgt ctatgcggat
    29461 aaatgtgttg aatgtgtagg acacaatgat caaccagctt gtgcaagcgc atgcccaact
    29521 gatggctgta tagtatggag tgaaattgct tcagggcaac caagtcgtga taatatcggt
    29581 agcgatatga gagatggaac taccccagtt tttgcataat tctacaaagg ctagttaaaa
    29641 agctagcctc tttttaactt tttttaaaca aattcaagta taattttaag ctttataaaa
    29701 accaaggagt ataatcaaaa tggaaaaaac cctatcgatt atcaaacctg atgccgtaaa
    29761 aaaaggtgtt ataggtaaaa ttttagatcg tttcgaaagt aatggattaa gaattgctgc
    29821 tatgaaaaaa gttcaactta gcaaagaaca agctgaagct ttttatgctg ttcacaaaga
    29881 aagacctttt tttaaagatt tggttgaatt tatgatcagc ggccctgttg tggtttctgt
    29941 tttagaaggc gaaggtgctg ttcttaaaaa tagagattta atgggagcaa caaacccaaa
    30001 agaagcacaa cctggcacca ttagagcaga ttttgctgaa agcattgacg caaacgctgt
    30061 tcatggaagc gatagcttag aaaatgcaaa aattgaaatt gaatttttct ttaaatctaa
    30121 cgaaatttgc taatgaaaat agccttttct aggattaaca atactaacta tccttttaaa
    30181 ctcaatcttg aaaatgttgt ttttgaagga aatttagtaa aagtaaatcc taaacttgtt
    30241 aaaataaatg ccacaatgca aggttttgtt tatagacctt gtgatagctg tggtgaagaa
    30301 cttgagcttg aaataaaaga aaatttggat ctttttgcaa gtgatggtat ttttaaagat
    30361 aatacgaatg aattaagcaa taccattgaa ttttttgatg gtcatattga tttaatagaa
    30421 gttgcagtta gtgagcttga agcttatttg agtgattatt tttattgtaa taattgcaaa
    30481 aataaaagct aacaaatttt aaaaaaggag ataaaatggc agtacctaag agaagagtga
    30541 gtaaaactcg tgcagcaaaa cgcagaactc actataaagt aagtcttcct atgcctataa
    30601 aagacaaaga tggaagctac aaaatgcctc atcgtgcaaa tccaaatact aaggaatact
    30661 aaaatcaatg attgacattg ctatagatgc aatgggcgga gattttggag aaaagcccat
    30721 tatagaaggc gttatcgagg ctttaaaaga aaggcctttt aatgctatct tagtgggaaa
    30781 tcccaatatt ttaagacctc taatacctaa aaatttagaa caatacattc aatatgagaa
    30841 tgccaatgaa gttttctcta tgaatgaaaa tgcaacagat gccctaaaaa gaaaagaaac
    30901 tacgatttat aaaaccatcg aacttgtcaa aaatggaaaa gcaaaagccg ctgtttcagc
    30961 aggacatagt ggtgcaagta tgtctttagc aactttaaga ttgggcagac tcaaaggagt
    31021 attacggccc gcaattgcaa ccttaatgcc aaatactaca agtaaaactt tgtttttaga
    31081 tgtgggtgca aataccgact gtaaagccga aaatttattt caatttgcta taatgggcga
    31141 tgcttatgca aaagaaatta tgaaaatttc aaaacctcgc ctggctttat tgtctaatgg
    31201 cgaagaagag tgtaaaggca atgaacttac taaagaggct catcagctta tgaaacaaat
    31261 tcctagtttt gttggaaatg ctgaaggtag agatattttt aatggtgaag ttgatgtctt
    31321 agtttgtgat ggatttgatg gcaacgtaat cctaaaagcc tgtgaaggcg tagctacagc
    31381 aattatccac attttaaaaa atgaaatcaa gcaatctttg atatcaaaaa taggcgcatt
    31441 gctaatgaaa ccttcattta aaagacttaa aaaacatatt gattggcaag aatatggcgg
    31501 cgccccactg cttggtgtca acggctgcgt tattataagt catggaaaaa gcgatgctag
    31561 agcaatcaaa aatgctattt ttcaggctat taactttagt gaatcaaata tcaatcaaat
    31621 aatagaaaag gagcttgaga aatacaatgc ctaaagcgag tttaaaaagt atagcttctt
    31681 atatacctga acaaatttta agtaatcacg atcttgaaaa gattattgat acaacagatg
    31741 agtggatcac aagacgcaca ggtataaaag aaagacgcat tgcaagcaaa gatgaaagca
    31801 caagtgattt aggcaccaaa gcagctataa aagctataga aagagcgaat ttaaaaccac
    31861 aagatattga tgcgatacta gtagctacct taagccctga ttattttacc atgccttcaa
    31921 ctgcttgtaa aatcgcagca aatttaggac ttaatggaat cagtgctttt gatatttcag
    31981 cagcctgctc aggttttatc tatcttttag agcaagctaa ggctcttgta gaaagtggtt
    32041 tgaaaaaaaa tgttttaatc ataggagccg aaaaggcaag ctctatcatg gattataccg
    32101 ataggagtat ttgtatactt tttggcgatg gtgcaggtgc tggagtagta agtcttgatg
    32161 agaacaatcc tataatcgat gtacatacag caagcaatgg aaattatggt gatttactaa
    32221 tgacagaacg ctctcaagaa tcaaaagaag cttcaagcct agcaatgaaa atgaaaggta
    32281 atgaagtctt taaaatagcg gtgcaaactt taagcaatga tgtcgttgaa attttatcta
    32341 aaaatcaaat tttgcctgaa caaattgatc tttttatccc acaccaagca aatttacgca
    32401 tcattaaagc tgtgcaagaa agactgaatt taagcgatga aaaatgcgtt gtaactgtgc
    32461 acaaatatgg caatacctca gctgcttcta tccctatggc gatgaatgat gcctatgaag
    32521 agggtcgtct taaaaaaggg aatttgatcc tgcttgatgc ttttggcggt ggttttactt
    32581 ggggttctgc cttacttaaa tttggtggtg agaatttctc ctaaaacctt aaatttacat
    32641 tttaacactg tgtaaaattt accttaaaaa agatttgaac caaatctaat taaactttct
    32701 atatcttaat actagatatt ttattggatt aaatttattt tgaaaattta catatttcta
    32761 tttttacttt tttgggattt tttatttaaa acttgagtaa attttctgcc acctttgagt
    32821 gaattttatg caaagtggca gaaggattag tttagttata ttttttagca aattctttca
    32881 taaattcaca cagggtttta acctgatcta aagtaacagc attataaata cttgcgcgaa
    32941 ttcctcctaa aattctatga cctttaagtc ctagcatacc cacttcttca gcttctttta
    33001 caaatattgg ttcaagttct gaatttttag cgatattaaa gcttacattc atcaaggatc
    33061 tatctttttt atcagcatgt cccttgtaaa atccttcact tgaatcaata cactcataaa
    33121 gcatcgcagc tttttgagaa tttttagcat cgatagcatc tagtccacct tgatctaaaa
    33181 gccatttcat ttcaagatta aacatataaa ttgcaaaagt cggaggagta ttaaacaaag
    33241 attgattttg tgcatgtatg gagtatttta acatacttgg caagttttta ttttgagatc
    33301 tttctaacat atctttgcgt ataaaaagac agctgatgcc cgaaattcct gcattttttt
    33361 gtactccgcc ataaaaaagc gcaatatttg aaaaatcaac ttttcttgag aaaaaatcac
    33421 tcgaagcatc gacgattaaa ggggctttgg ttttaggata gtttttaaat tgtgtgccat
    33481 aaatagtatt atttgagcaa atataggcat aatcggcatt atcactaaac tcaacttgag
    33541 gtatgtgatc aaacttactt tcttcactac tagcaacaac cttgacattt acccctaaaa
    33601 tttgagcttc ttttatagct ttttgagtcc aaactcctgt atttgcatac tcacaaaccc
    33661 cgcctaaaga taaattcata ggtatcatag caaattgcaa actcgcacca ccttgcaaaa
    33721 ataaaacctc atagtcatca tttaaaccat aaagttcttt tgctttttgc attgctccaa
    33781 aatgcacttc ttcaaatact tttgaacggt gagaaatttc catgatagaa tagcccttgc
    33841 cctgataatc acaaagctca tttttggcat attctaaaag ctccaaaggt aaagtagatg
    33901 gacctgcgct aaaattaatt tttctcatta tttttcctta tagaattttt gcttcttttt
    33961 gtaaagtttg agaactcaaa gtgatgatat cttcactttt tagctcttct aaatttgcta
    34021 ttttaccatt ttttttaatg gaaattaggt ttttgctttt tttaaaaaaa ttttcatgct
    34081 gaaaaaaagc attttggagt ttttgcagtt ctaattcagc tttttgaatt ttgctttcta
    34141 ttatgatttt tgcttgctta agcaaaaatg caagctgttt ttcttttgcc tctatcatag
    34201 cttctaaaga ttttgcttta aaaaatttgt gtagattgct gagtaaattt tcacaatatt
    34261 ctaatttact ttcccaaagc tttgtcaatt tttcttccaa aaggtcaagt ccttgttcta
    34321 aatcaagtct agaataaagc aaagtatcga tagcagctga tggagtgggt gctctaaaat
    34381 cagctacaaa atcactgatc acataatcaa tctcatgacc aattgccgaa ataataggtg
    34441 ttttagcttt aaaaatttcc cttgctaagc cctcatcatt aaaacaaaaa agatcctctc
    34501 tgctaccacc ccctctagcg ataatgataa catctaatcc tatctcatca gcttttttta
    34561 aagcttgaat caaagaataa gctgcgccac ttccttgcgt aagtgcgtta aaaacataaa
    34621 ttttagctag aaaatattct ttttgattga taagttttaa catatcttgc aaggccgctg
    34681 aagtctttga agtgatgatt ccgatttttt tagggaattg aggcaaggtt tttttatact
    34741 cactattaaa caatccttct ttttgcaagc gctcttttaa tgctagaaat tgagcctcta
    34801 aatctcccat tcccgctttt ttcatgctac ttgcaataaa ttgataacgc ccactttcag
    34861 catacaaact cacacttcca acaagctcta aaaaatcacc taccttaggc tgaaaatcaa
    34921 cttttaaatt tgcaccctta aacatagcac aagctatact tgatttttca tcttttagat
    34981 caaaatacca atgtcctgat ccgtgcatgg tgatttttga aagctctccg cttaaaacaa
    35041 tatcattaag atgtgtttcc aataaagcct tggcttttaa atttaattcg cttactttca
    35101 tgattttcca tatataaagt attacaaaaa gtatcaattt aactatattt tgtataataa
    35161 agttacattt ttttaagaat tttaatcttt atcttataaa aatagtaaat tttataaaaa
    35221 agattatata taatacttat atatttcaaa cttaaagatt aaaggatttt atcatgaaat
    35281 taaaaatttt ttgttctgtt ttgatttttc gttaactttt gctaaagaac ctaaccgtcc
    35341 cgagtgtatt gccccagctc aacctggagg cggttttgat ctaacatgta agctaattca
    35401 agtaggtatg cttaaagcta acattatttc aactcctatg agagttacct atatgcccgg
    35461 aggagtaggt gttgtagctt ataacactat ggttaataat agatctaaag atggtaatgt
    35521 tgttgtagct ttttcaagtg ggacattact gaatatagcc acaggaaaac atggaaaata
    35581 taatgaaaat aatgtcaaat ggcttgcttc agcgggtgta gattacggaa tgatagccgt
    35641 caaatcagac tctccttata aaaatttaga agatctaata aatgccttgc ataaagaccc
    35701 aaattctatt agtataggtg cgggaggttc aataggagga caagactgga tgcaaacagc
    35761 attacttgca aaaactatta atatcgatgt aaaaaagata cgctatgtgg cttttgaagg
    35821 aggaggagat gctttaactt ctcttttagg aaatcatatt gatgtgatta gcgcaggcat
    35881 agctgaactt gtacctcaaa tcgaaacagg aactattaga gtattggcta tcttttcccc
    35941 aaagagactt ccgggcactt tagcaaatat tccaaccgct aaagaattgg gctatgaggt
    36001 agaatggcca gtaattagag cttactatat gggggcaaaa gtttcagacg aagcttataa
    36061 ttggtggctt gatgcatttg ataaatttca acaaacccaa gaatataaag atcaattaaa
    36121 acaaagatct ctatttgaat tcgataaaaa aggtaaagag ttagaagatt ttgtcaaaaa
    36181 acaaactgat caatacagaa ttttagccaa agaattcgat cttataaagt aaaatcatgt
    36241 caagtataag aattgtcgct ggaattttat tggttataag tttaattgga atttacatag
    36301 ggtggaatat acattcagat tttaattatg agcccttagg accgcgtcct tttccagtag
    36361 gtactttaat tttaatcgcc ctttgttcta tatttcttgt ttttttctct gaagatacta
    36421 aggttaaatg gggtgatttt attctttgga aaaagctcat cgttttaact ttagcttttt
    36481 taatttatgc gctttttttt aagtttttag gctttataat ttgcacaatc tttttaattt
    36541 ttacaataac tttacttttt ggggcaactt taattaaagc tattgttttt tctatctcaa
    36601 gtagtattat tttatactat ctctttaata ctttattgca aattactttg ccgtttggtt
    36661 ttatatttga taatttttaa ttaaaggaaa tttatggata cttggatgta tttaatgcaa
    36721 ggatttagca tagccttaga tccttataat attcttatag ccttaatcgg ttgttttata
    36781 ggtactattg taggtatgct tccaggactt ggacccatta atggagtagc cattttactt
    36841 cctctagctt ttgcaatgaa tttacctgca gaatccgcaa ttattttact tgcaacggtt
    36901 tatatgggtt gtgaatatgg aggtagaatt tcttccatac tacttggaat acccggagat
    36961 gcagcagcta ttatgacaac cttagatgga catcctttgg ctaaaaaagg tcaagcagga
    37021 aaagctctta gcatctcagc tcttagttct tttattggtt catttatagc aatttgcggt
    37081 attatacttt ttgctccact tattgcacaa tggtcgttaa aatttggtcc tgctgaatat
    37141 tttgctctta ttgtctttgg tttagcaact ttaggaagta tgttagccca aaaacctata
    37201 agatcttttc tatcagcttt gataggactt tttttaacca ctataggtat agatggaaat
    37261 acaggtgttt atcgctttac ttttgatagt ccacatttat atgatggaat ttcttttgtt
    37321 gttttagtaa tgggactttt ttctgttagt gaaatttttc taatgttaga gcatactcaa
    37381 acaagtcaaa acatcatcaa taaaacaggt aagattttgg taaatatcaa agaattcttc
    37441 ttttgctttt ggaccattat aagatcctct attataggat tttttgtagg agttttaccg
    37501 ggtgctggag caactatagc tagcgccatt acttatatga gtgagaaaaa aatagccggt
    37561 gaaaagggta aattcggcca aggagattta aaaggtgtgg cagcccctga agcagctaat
    37621 aatgcttcag cctgtggttc ttttatccca atgttaacac ttggtcttcc aggttcagga
    37681 acaactgcgg ttatgatggg cgcattaaca ctttataata ttactccagg tcctacaatg
    37741 tttactgatc aagtaaatat agtgtgggga cttatagctt ccttgttatt tgcaaatgta
    37801 attttacttt taatgaattt gcccttggta ggaattttcg taaaaatttt aagcatacct
    37861 atgtggagct tggctccaat tatagcaatt gtttcaatta taggtgttta ttctatcaat
    37921 agtactgatt ttgatatcat tttaatctta attattggta ttttaggcta ttttttaaga
    37981 aaacttgaat ttccaatggc tccacttata ctcggttttg tattgggaga acaattagaa
    38041 accaatctaa gaagagcttt atctatcagc aatggagatt tttcaatact ttggagtggg
    38101 atcatagctc aaagtttact gataggagct gtgctaatta tactaatacc ccttttaata
    38161 aaaaagctaa gaaagtctaa attttagact ttcttagcta taaacataga acttacgccg
    38221 aaactaaaac ttttaaattc aagcatttca aaacctacct gtttaagttc ggcgataaat
    38281 tcctctttac ttaaaaaacc ttctatagaa ttaggcaagt attcgtatgc acttttattt
    38341 ttgcttatca ttcctcccaa gcttggtaaa atatttttaa gataaaaatc cctacaagag
    38401 gctacaaaac ctcctttttc tcttttagta aattctaaaa ctacaaaaat tccatcttgt
    38461 ttaagcactc ttgaaaattc tctcaaggct ttttttctct ccactacatt gcgtatccca
    38521 tagcttatac ttacgatatc aacactttca ctttgcaaag gcaattcttg cgctccagct
    38581 tctataaatt cgatatttgg gaatttttgt tttgctatat ttaacatacc ctcacttgga
    38641 tcaatacctt tgatgtgggc tatattttta tttaattttt tcgcactttc ttgccaaatt
    38701 tctatcatat ctcctgtgcc acaagccacg tcaactatgt ttaaattatc cttttggtaa
    38761 agctttaaaa ctcttttaca agcaaattta cgccaactta catcaacacc aaaactcaaa
    38821 attctattag ccttatcata ggtcggagct atttcattaa acatttttat gattttatct
    38881 tgcttttgca ttaatatcct ttataaattt tcaatttctt acttgcttta tggattaatt
    38941 ttccaagttt ttcttttttc ttggttaatt ttaaaagcgt ctttttttca agatcgcaaa
    39001 taaaatattt attatatagt ttgctcaaaa ttttcaaatt atataaatta tgaaaatatt
    39061 ctaaaaaaac tgagagtcct aaaaaatttt cttcaaaagt ttcgatttca aaatttttca
    39121 ataaattttt cttaaacaat acaagtcttt ttcttaactg catggcaatc atttgcttaa
    39181 aaaaatattt ttcttgctcg ctcttataga atgaatcttc tttgataaaa aaatcaaaat
    39241 cactcaataa attttgtaaa tcttcactac ctaaaaataa aagtaaattt tcatctagct
    39301 cattatttgc caaaatacaa taagattgct ttaccaaatc ttcaaatcta agagctaaat
    39361 ttttatttaa ctcctcatca aaaatttctt ctgtactcat taagataatg taaatctttc
    39421 tcgcataaga aaaaaactca caaaaaacct ctctttgccg gttttctaaa gctaaattcc
    39481 aatacaattt taattttcta aatagataaa ataaaaaaat tctatatcca tcaaaagcta
    39541 aaatagaact tggaaaatct agagtaaaat tttgattttt ttctataatt ttaaaacatt
    39601 tttctatatc tatttctaaa ttattaaaac cataaagtat tatattttta gaatccaaaa
    39661 ccccgcaaag ctctctttga attctaaatt ctttaggtgg tgtgaaaaga tttgccatct
    39721 ctaaagtcgg aaaaaaaacc tttaaaacat acaaattaaa atcctcatat acatcaataa
    39781 ggcttttaaa agaacaaagt ttaaattcat agcgtttttt cttgatgctt ttttctatga
    39841 gttttttacg ggctttttca taatcctttt tagaaatctt ttcttcttga ttttgctcta
    39901 aaatcgggtt atttaatcgg gttattttat aaaaatttcc atttaaattt tgaaatttta
    39961 catcataaaa atatgttatc ttagtataga atgtttcaat ttcataaatt tcaaaaacaa
    40021 ttccatcttt ttgtaatttt tctaaaagag tagcatcagg aagtaaaaaa gtcttctgaa
    40081 tttcatgaac cattaaaata acccttaaat tctttgggtt attttaactt tattttgctt
    40141 aatggcactt tttacaagtg ctaacatgag cacaaactgc taaatgatcg atgatatttc
    40201 ccattttttt ctctaatttt tcttgatatt catcaagttc agcatcttga aaactcatat
    40261 cttcgatatt gccacatttg ttgcaaatta tatgtatatg tctttcttca tagatatcat
    40321 aacaagtttt ttgatttgct acattgattt ctacaactaa gccttgttct tgtaaagtgt
    40381 taagattttt ataaactgta gcaagagaaa tggaagggta ttcttttttg atttcctcat
    40441 aaagctcttc gatatttgga tgttcatgtc tttttaaaat ttttaaaaca cacaatcttt
    40501 gtggggttgc cttcaattca tgttttttaa gtatttgtaa caattccatt cttttatcct
    40561 agttcttttt aactaggaat aataataaat tttttattaa aaaaagttta tatcaaatga
    40621 tattttttat tagataataa gaagctatga aattttaaac atttttttgt tgttttggtt
    40681 caaatttaaa ggatgttatc gacccaattt atttttaccc tttgcaccaa accatcaatg
    40741 tcaagtttta aagctttttc cacttcattg gttttgccgt gctcaataaa actatcttca
    40801 tattcaaaag aaacaatttt aatttttaaa tcattctcct gtacaaagct ctctaataaa
    40861 ctcgctacgc cacctattct tgcattttcg ctaaaaacaa accaaatttg actctgtttt
    40921 gctaactctt ttaaaagtag tttatctaag ggtttagcaa aaatcaaatc aatcaaatta
    40981 gcattttgcc cctcatcttg caattttctt aaaaccttcc aagccttacc caccccttgt
    41041 ccataaccta aaaaagcgat attgctttga ttttttacaa gccattgcgc ctttccaagt
    41101 tctatcttgg tagggttaaa ttcctcatct aaaataaaag atcctctagg ataacgaaaa
    41161 gccaaacatc cctcatgggt ataagcatac tccataatat ttttcatcat aagctcatct
    41221 cttggagcta aaagagtgaa atttggcaaa ggagctaaaa aactaagatc aaaaacacct
    41281 tgatgcgtct ccccgtcttc gcctactatc cctgctctat ccatagcaaa aaccacattt
    41341 aaattcataa tcgcacaatc atggataact tgatcgtaag cgcgttgtaa aaaagtgctg
    41401 tatatagcaa taaaaggttt aaatccttct ttagccatag ccgccataga agtaacagcg
    41461 tgctgctcag caatacccac atcccaaaaa cgatttggat atttttctat aagcttatca
    41521 agacctgttc cacttggcat agccgccgta actccaacaa tattttcata ttttgaggct
    41581 aaatcaagca aattcttaga aaaaatttca gtagcagatt ttttagtatc acttttttta
    41641 acactctctc cactatctac atcaaaagca ctgaccccat gccatttagc attttttcct
    41701 tcggctaaac tataaccttt tccttttaaa gtttgcgcat gaacaataca aggtttttgc
    41761 atagcctttg cttgttttaa tgcagaaata acctcactta aattatgtcc atcaataggc
    41821 cctatatatt caagccctaa ttcttcaaac aaaagcccag gagtaataag tttaaaactc
    41881 tcttcaaaac gcttggccat ataagtagca gaatcaggta atgcatctaa cattttagcc
    41941 acgcgttttt tgaaattttg ataaaactgc gttgccatgg cttgagagag gtattttgaa
    42001 atcgcgccta tgggttttga aatactcatt tcattatcat ttaagataac tacacaagga
    42061 aatttagaat ctcctaattc attcaaggcc tcataagcca tacctgcact tagagctcca
    42121 tcgcctatca aagctacagg agtgcgtttt tcgcctttta gtgctatggc cttacaggct
    42181 cctacagcta aagaaataga agtacttgag tgtcctgcta caaaataatc cccatcatta
    42241 ggcttggtat acccactaag cccaccaaat tgacgcaaag actcaaaaac attttctttt
    42301 ccacttaaaa gcttatgtgt gtaagattga tgggatacat caaatataag aggatctatc
    42361 ccattatcaa ataccgtgtg catagctata gtaagctcaa ctgctcccaa attggagctt
    42421 aaatgccctc catttttact tactacatca ataatttttt ctctaatgcg agccgctaaa
    42481 tcttcaagct gggttaaatt tagcttttct aactcttctt tagtataagc aaattgataa
    42541 tcttttttaa ttatttcatt cattattaac catttttttg attttaataa gacgcgcatt
    42601 caaattggat tctatattgc cactatcgct taaaatgata acactaccct tgctaatagc
    42661 atcatcaaga gtgattttaa tatgagaatt ctcactaaaa tgctctttta gataattata
    42721 atctatagaa tttactttta tttcaataga acctgctcct ttaagctcat tgatgagatc
    42781 tttagctaaa gcataagcaa ttttgcttga gttattttca agctctttta aaataacctc
    42841 tttggcaata tctatagctg tatcagcaag ttctttttca tttttttcaa taaaagcatt
    42901 aagatttaca caagcttctt ctaactttga aacacttttt aaatacttat cgcgcaagtc
    42961 atttaattct ttttcaaatt cagctctagc ctgttcataa ccctctttag aaaatttt
//
LOCUS       DARAII010000004        35078 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.004, whole genome shotgun sequence.
ACCESSION   DARAII010000004 DARAII010000000
VERSION     DARAII010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35078)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35078)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35078
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.004"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1125)
                     /locus_tag="SB143_000150"
     CDS             complement(<1..1125)
                     /locus_tag="SB143_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEF9748728.1"
                     /translation="MLKLSNENKKFIKVILDGFFRIYLAKLFSNFKPKKHKGFTQYAI
                     ISAVYNVEKYLDDYFKSIINQRLDFKKNIFMILVDDGSIDNSAQIIKKYQKKYPKNIV
                     YLYKENGGQASARNLGLKYMQENDYQIPWVTFTDPDDFLDRNYFYEVDKFLVTHKAND
                     ICMIGCNIIFYHEKQKLYKDNHALNFKFKNGIQVKENCNLDNFIQLSAASCFMNIGYL
                     DKLLFDEKLKPNFEDAKFINEYLLDNINLKSAFLPTVKYFYRKRVEQNSTLDGKDKIK
                     DYYTMVPNFGYLNLFKDIKITKVPYFVQNVVLYDIFWQIKTLILNPEKLAILNNEEKK
                     LFKELLFENFKFIDSCNIKNFNLHAFDFFYKKGILNYFKNE"
     gene            complement(1126..2103)
                     /locus_tag="SB143_000151"
     CDS             complement(1126..2103)
                     /locus_tag="SB143_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular biosynthesis protein"
                     /protein_id="HEF9748729.1"
                     /translation="MKYKYSVIIPIDLDLRPFDILKKVKSILKRSSDEVEIVFGHNDR
                     GSIFDKYLKRITKKNNVKLVSGKFYTRLICQSLLRNRAVEQCSSEFIYLMDVDCLFDE
                     ELSDGCINDIKSDKNPLIILFCLYLSKKGSREVFKHTREEMFDKYIAFRKDLYLHLAS
                     PSASIFMKKTDYFAVGGFDEEFMGHGGEDFEFMIKLALYKNVIKPTKDLMLNKFYKAP
                     LLSEGFRKYLAFNGLPYFFDKKIVFHLHHRRNKLFGYFKQYHKNSNLLQEKIKLDSSL
                     EENEESLIEFYEQLCKKYDVSIDKYSVLFDSYKPKKFTLDHILLFLKRL"
     gene            complement(2104..3051)
                     /locus_tag="SB143_000152"
     CDS             complement(2104..3051)
                     /locus_tag="SB143_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEF9748730.1"
                     /translation="MDALKIAKEVFATEAKAIEDLALNLDENFSKAIELMLHTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPDDILIAISNSGETEE
                     ILKIIPAIKKRKIPLIAMCGKENSTLVKQGDIFLNISIKEEACPLQLAPMSSTTATLV
                     MGDALAAALMKARNFRPDDFALFHPGGSLGRKLLTRVSDLMVSKNLPIVHPDTEFNDL
                     VDVMTSGKLGLCLVLENEKLVGIITDGDLRRALKANDKPRFDFKAKEIMSINPKVVDA
                     DAMASEAEEIMLKYKIKEIVVSKEDKVVGIIQLYAIGNV"
     gene            complement(3078..4709)
                     /locus_tag="SB143_000153"
     CDS             complement(3078..4709)
                     /locus_tag="SB143_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEF9748731.1"
                     /translation="MKKILILFLSCIFCFGAIDVSQISSSGNSSTTSFVQGLENNISK
                     SAPTQIPVFGAELFNGNFKNYTQRVYNPDYKIAVGDQISLKIWGAVEFEQILVVDSQG
                     NIFIPKVGAVNLLGVKNSALVSVIKAQVNKIYKNNVFVYADMNAYQNVSVFVTGSVNA
                     PGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNAVIKKIDLYDFLLKGQMDLF
                     PFRSGDVVLVGNVQSYVFVNGDVQRPFRFELANDIKTLFDLARVAGAKPIVTNAILRS
                     YGNDHKLEVSAYNKMQFSKVLLKTGDEVQFNPEYISQNISITVNGEHSGLKTLVVRKG
                     TTLEDVSRLIVANGQSDMNALQVFRKSVAKTQKDLINAQLKELETLALTSPSVTSQGA
                     AIKAEQAKLILEFIQRARELEPKGQIVIDKPKSYAEVILEEGDTINVPSKNNLIIVQG
                     EVTLPGAFVYNKGENLKYYINLAGGYGERADTSKVLVIRNNGKAQRYSGSVDMMPGDS
                     VLVLPKVESENLQIFSMLTQILYQIAVATNVVLNL"
     gene            complement(4711..5826)
                     /locus_tag="SB143_000154"
     CDS             complement(4711..5826)
                     /locus_tag="SB143_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEF9748732.1"
                     /translation="MTKINTFFNKIKDLSIFDSFKIVWILMIFVVIYYTLVAADRYVS
                     TITMSVKSTTGSTQASGVLSLLTATSNTSEDIKFLQGYIESLDMLKILDEKIHLKKLY
                     NEQYIDLFFSLSSSSSIESYLKYYQSRVKVHVDDKTGLLNVEVEGFTPESAHLIAKTI
                     MQESEKFINEISHKAAREQMSFAEEELIKYKERYQKAQNDLIAFQNKYGVFDPLKQAE
                     AKAGLVTQLESDIAQREAKLLTMQSYMNDHAPEIVTLKAEITALKKQLVKERSKISAD
                     NSSQKLNDLAAKFQDLTIEAGFAQSAYEAALKAYESARIEALRKIKQLVIVQTPDVPQ
                     SAKYPEKIYNILTAFIVLSLIFGVIKFVKMIIEEHKY"
     gene            complement(5826..6488)
                     /locus_tag="SB143_000155"
     CDS             complement(5826..6488)
                     /locus_tag="SB143_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9748733.1"
                     /translation="MIKVLNLTKSYPLFNGGRHYVFKDFTFEFPENCSIGLMGRNGAG
                     KSTLMKLLSGSELPDRGKIITNKKFSWPLGLSGAFQGSLTARDNAKFVARVYGYKGEE
                     LHEKVKFVEDFAELGKFFDEPMNTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPK
                     FREKSHKLYKERLSQSKVIMVSHNVAEIKEWCDKIIFMENGKVTVYDDVDEGIAVYQG
                     KK"
     gene            complement(6485..7267)
                     /locus_tag="SB143_000156"
     CDS             complement(6485..7267)
                     /locus_tag="SB143_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9748734.1"
                     /translation="MLNVIHALFFRELKTRFGKNKYLGYFWVIGEPMSVILILTTIVT
                     ILREYHHQLMPEGISVFMFLISGIVPYFMFRSIVTQLMNGIGANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFVAVLFIVGWFFRLEVIPRHFLSVMICIFLLMCSGFALGMVFA
                     IIGYFLEPLKTLLNYFSIVFYWGSGVIFPTWLMPKPILDILYYNPLLHVMELLRFNFF
                     ENYPLQDDYTYTYPIFCIICTSFVGLFLYYYNRQALTAVRRT"
     gene            complement(7331..7747)
                     /locus_tag="SB143_000157"
     CDS             complement(7331..7747)
                     /locus_tag="SB143_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748735.1"
                     /translation="MDERILEFIKNEQLLSWAMSDEKGVYIANAFYIFDEKNLAFIIA
                     SHEDTKHIKLASENPSIALNIAKESKIAFLKGIQAKAKFKSASKEQIKIYFSKFPFAK
                     LDKSAKIYALELDWLKFTNNALGFGKKLEFYKDKIL"
     gene            7824..8387
                     /locus_tag="SB143_000158"
     CDS             7824..8387
                     /locus_tag="SB143_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9748736.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSLSYSNDEEGKSL
                     NLKRQYGFSFTFEGSKLTQADLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQSNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQNNAEKGLNLYA"
     gene            8427..9116
                     /locus_tag="SB143_000159"
     CDS             8427..9116
                     /locus_tag="SB143_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEF9748737.1"
                     /translation="MKNVEILENMLKLQKKLNDETNGLNWEEGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISSPTNWENVRMEIVDIWHFILSLLLEEYTNKKDKNFQAIA
                     NEIICVSVFQDFCKEEGNPSENDLYSILNDIELIIHKCSGFGFSLGELLSNYFILAIK
                     CGLNLEILYKAYIGKNILNIFRQNNGYKQGTYKKIWNGREDNEVLAEILEQELDFDTI
                     YKKLEEYYKKA"
     gene            9118..9828
                     /locus_tag="SB143_000160"
     CDS             9118..9828
                     /locus_tag="SB143_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEF9748738.1"
                     /translation="MRILRLAIKDFFTLQFLKFALIPLVFSFILMVFLAVFGFSALLN
                     YFNSLFSVGEDSFWAWFYTLHFVQILITIISFLFSGFVIIFASVFLALFITSFLTPLI
                     VKQINNKYYHHEVQNISNMYIIFEIFKIFLKFIGIFLLCTLALFLPFINLFVYYLAFY
                     YLFHKLLMLDITSSVLDKENFKIFNAQASTFEFKFSTLCFYLLSSIPLLGIFLQVFFV
                     IFLTHLAYQRILKLEVKG"
     gene            complement(9811..10776)
                     /gene="tilS"
                     /locus_tag="SB143_000161"
     CDS             complement(9811..10776)
                     /gene="tilS"
                     /locus_tag="SB143_000161"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEF9748739.1"
                     /translation="MQIKDEILSLLKKGRNLLAFSYGSDSSALFRFLVQKKIDFDLVM
                     INYKTRKNSDLEEQKAKELALKFHKKIFIKSAPVIKGNFEKEARDFRYDFFEKICLEQ
                     NYSNLILAHHLNDQLEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFMSKDEIL
                     SYLKENDIFYFQDESNENEKYFRNYIRKNFSNAFVSKFHQGLKRSFFYLDEDRKKLYD
                     LESIKEIQGLMICPKNESLIAKAVKMKGLLLSAAQRKEFLKGDCVLGGKIGIVYKDEK
                     AIVFKYETCQKLPKEFKEACRIAKIPRLLRAYLYNHKIDISSLNF"
     gene            complement(10766..12085)
                     /gene="rimO"
                     /locus_tag="SB143_000162"
     CDS             complement(10766..12085)
                     /gene="rimO"
                     /locus_tag="SB143_000162"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEF9748740.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQGENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIEGI
                     KAARILYLYPTSASEALIKRIIASKIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSVPNSFLRTGFIVGHPGESDADFEELCEFIKDFGFDRVSVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGKKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEIIQNVDKKLIAKALRKIDAN"
     gene            12159..13256
                     /gene="prfB"
                     /locus_tag="SB143_000163"
     CDS             12159..13256
                     /gene="prfB"
                     /locus_tag="SB143_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEF9748741.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWNDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASMLYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANAGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKSE"
     gene            complement(13340..13612)
                     /locus_tag="SB143_000164"
     CDS             complement(13340..13612)
                     /locus_tag="SB143_000164"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748742.1"
                     /translation="MEKGFELIKAKNNNANMDFYSPETLKNFDEKRYKYLKSKDFRLY
                     GSVKGYQYMIFSVNKDKSDKREFWALICEDSKVENCKIENATGRGV"
     gene            complement(13845..14963)
                     /gene="truD"
                     /locus_tag="SB143_000165"
     CDS             complement(13845..14963)
                     /gene="truD"
                     /locus_tag="SB143_000165"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEF9748743.1"
                     /translation="MNLAEENTIFKPLYSLKHSPINTYFSKNSDDFVVRERPLYELSG
                     KGEHLILYINKKDLSTNEALRILSEVSGVKMRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLANFSHPKLKILETFVHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALINLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFTEKELAQIYSISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     ERFKARDISAMGLLIGAKAYEASQGLALNLENEIFKDALEFKAKMQGSRRFMWSYLED
                     VKWRYDEQKAHFCMEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(14932..15753)
                     /locus_tag="SB143_000166"
     CDS             complement(14932..15753)
                     /locus_tag="SB143_000166"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEF9748744.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWL
                     TLEQIATKAMLVNISDAIVMNAKPKYALLGLALPNSLGEDEIKALQKGFLKTAKKFNI
                     KIIGGDTISNDKIDISITIISKVRNKAIFRKGLKKGHLLAYTGVLGKSLRGLEILQNG
                     GTLNSNHVFIKPKLRPDFFYEIAPFISCAMDISDGLSKDLSRLLAQNKCGISWFKTLD
                     DYTLYSGEEYEILFAFDEKEYPKIEKIARKHGVKLNIFGKAVKGKYEFSGREHHF"
     gene            15835..16908
                     /locus_tag="SB143_000167"
     CDS             15835..16908
                     /locus_tag="SB143_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HEF9748745.1"
                     /translation="MKNLELRIFRFDKQKDYEAYYKPYVYNNYENFATLYDLLLQVQN
                     DDIYFDFEKNDKSYIVVNKEFLPLNTPLDILVKKYDFNLIIEPLSTKRSVKDLIINKD
                     NFLEKFKYLAPFANEEDKKLYEKYDYLYYSSEILDFLPEYMGDAVFYLASKMIEKYPD
                     KKIKILKTICDTQKGIFYHLTSKNEDLENTIKNLQKEIIDLKLINEAALEFDLPKINA
                     FDNEIKELGEIKYDFNDFNIACYGFKIKDDIKSKIKAHFISYENSDKNNGFSLLQLNP
                     ELSYKMAANIILDAYDSGADFMVVNQAKDFYMFDTCSKKLMQSSGREFKDFYVLSYFE
                     FLSLIQGIKNPSLQNHDLKVSLT"
     gene            16905..17288
                     /locus_tag="SB143_000168"
     CDS             16905..17288
                     /locus_tag="SB143_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEF9748746.1"
                     /translation="MKISLECKDLIIEKALELFLKEHLVMKKDCDFIISDEKISTQKP
                     LFIIAKNSPFLSLPFSKEALMNSLNEFDSALKATAQKLADERRRVLEARIDKIASEFK
                     RDYQSKIDLAISELKDKLVKALMYE"
     gene            17281..17970
                     /locus_tag="SB143_000169"
     CDS             17281..17970
                     /locus_tag="SB143_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HEF9748747.1"
                     /translation="MNNEFISVKDFLQGKKNIHFNDSTQPNKKEKTKKTLPKLYTSIE
                     SGIYKGKKLLLPSLQTTRSTKSIVKKCVFDVLRSDLRNKIFIEAFGGSALMAAEALSN
                     YALKAYAIELDLNAYKIALENAKNIDTNLKVIHANTFEILPKLIEDSKEDIILYLDPP
                     FDIREGFSGIYEKIYNFLEKLKLDALFCIILEHNSKIKTPDNIANFTKIKEKKFGSTS
                     LSFYQKNILEE"
     gene            18033..19079
                     /locus_tag="SB143_000170"
     CDS             18033..19079
                     /locus_tag="SB143_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEF9748748.1"
                     /translation="MRVLIFFLLLMTSVFATQIKDIANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTARPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQDSDLTLSLKVADFKTASDIERILNTIFEEDVARAVDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYTPQSKVIIDERTGTVIAGVDIEVEPVLITHKDITIKIDP
                     NNNAAAAQNEIDMKDGGFVDPNSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            19079..19420
                     /locus_tag="SB143_000171"
     CDS             19079..19420
                     /locus_tag="SB143_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748749.1"
                     /translation="MKVDNFLSTYSMNNALLERAAKARILESDFKINNNEIITKTKED
                     EALKEQTDAFEAFFLKQVLDVSLKTQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            19483..19680
                     /locus_tag="SB143_000172"
     CDS             19483..19680
                     /locus_tag="SB143_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEF9748750.1"
                     /translation="MINPIQQSYVANTTLNTTKTDKETKTNDTQKTENDKAARIAEQI
                     KNGSYKIDTKATAQAIADSLI"
     gene            19719..20153
                     /locus_tag="SB143_000173"
     CDS             19719..20153
                     /locus_tag="SB143_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEF9748751.1"
                     /translation="MLKQRLDEVNAILTKLIELTQEDIENIKIAKHDTVASSVEEKNK
                     LISEFSAAKKKLDSALVELNNSSTKGLSELLDEEDKQKLDELKKNLQTLHTTNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTTPESIFKINV"
     gene            20163..21989
                     /gene="flgK"
                     /locus_tag="SB143_000174"
     CDS             20163..21989
                     /gene="flgK"
                     /locus_tag="SB143_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEF9748752.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTSNNISNANATFYTRQRVVQT
                     TNGFVTTGGVQVGTGTAVESIVRLHDEYSYYKLKGASNQLEYTKYMASTLEEIAQRFP
                     DLQSTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGVNFHPLKLDYDDKNKAYSIYYET
                     PDEKVRDLTAKINGGQLGAQLDLRGRNYSKSEGKYSDGIIQGYMDSLNTFAKTMINET
                     NNLYASSAKSSVTSDYLPGLTEDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITVD
                     VNTTMEDIMRQITANTDDNGNNNANDDVDDHINASFSYDAKTGDSLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTNASDIKVKDSILNDPSTVRASLNGVDSGNDMANKIIQ
                     LQYDKVNFYNEDGTIDNLTMEEYYRKLTGKIGSDGENNNVVNASNQTLYNSVYSEYQS
                     KSGVNTNEELAALIQWQSSYGAAAKIVTTVDQMLDTLLGLKS"
     gene            22006..22770
                     /locus_tag="SB143_000175"
     CDS             22006..22770
                     /locus_tag="SB143_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEF9748753.1"
                     /translation="MKNFTPLKNKLDSLVEEKNTNKALFESPDPLQVAKFHNDEFIAL
                     LCALFAYGNAKNIVNFLKKLDFSLLDLSQKQIQKELKNLKYRFQNEKDIQEIFLTFAR
                     LKNEISLHELFSTAYQKRENTTDAILAFLQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHTHKISLTLGLLKRKIYDYKSV
                     LELTHNLKRLDANDPIKYDFALYRLGQNKELSKLKE"
     gene            22773..23537
                     /locus_tag="SB143_000176"
     CDS             22773..23537
                     /locus_tag="SB143_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEF9748754.1"
                     /translation="MGFEHLDTIYYFVLFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAYGIFFTALGAAIGSYSVLFVKDEH
                     LKLIILIFLTLTFLYTALRPSLGKHESEAKIKNIKFFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMKKASINTKILNFTSNVVALFIFLWQYELLWIVGLLMGVGQILGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(23534..24709)
                     /locus_tag="SB143_000177"
     CDS             complement(23534..24709)
                     /locus_tag="SB143_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEF9748755.1"
                     /translation="MKLYELEIKGKTKQTKHLRAKNLNEAQAKAIAKKWEILNIKEIQ
                     KASFKRLDDARFILFFQELSLLCEVGISIKDALKELDKIYSHKMIAKLCDNLNLGQNL
                     SLAFENANFGLTHAELALIKTSQNTGKLSEIFMQISRLRQNNVENEQRVKKALRYPLI
                     VFLSVCAAFVLLMLFVVPNFKDLFEDLNLALPFITELIIYIYNFLDKYILLVFCLIAL
                     ILFLTLFLYRKYYFFSYFCDSLLLKLPLLSKFIIYQQNYSFFMIFSLLLKSGISLLEA
                     FKLATLALNNKKVLLYYQEIRTFMDSGLEISHAFKKVDLFDPLVFSMLSIAMKSSKLE
                     FLSEEIAKYYKNKSENLMDKFLSFLEPIMTLWVAILVLFLALGIFLPIWELSSGVNF"
     gene            complement(24696..26258)
                     /locus_tag="SB143_000178"
     CDS             complement(24696..26258)
                     /locus_tag="SB143_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEF9748756.1"
                     /translation="MIERFLFEDYINGKITLEQIDREHKIDSEIFLKALASDKNISYS
                     TLEELDLSLGEKFPCSFLFKFKILPILSKENTLHIASSKPCSLELLDEIRIFYEVKNI
                     EVLIASEFKIMKFLYKLQVREKLKNLSTNLRLEWKENRSQDEQSCISQIFDFILDEIL
                     EFNPSDIHIEARENDTLIRFRVDGILREFACLEKDIYEALVFHIKFLSQLNVAESRKA
                     QDGNFELKIKENRYDFRISSLPLQNGESIVIRILKHNEEILDLENLNLGEKNLTILKK
                     ALYNPYGMILLTGPTGSGKSTSLYACLNELKSIEKKIISVEDPIEYKMPLIQQILLNP
                     KAGLEFNNALRAILRQDPDIIMVGEIRDEESLDIAIKASLTGHLLLSTLHTNNAISTI
                     DRLIDMSAKPYLIASALRLVIAQRLVRKLCPKCKQKSTKVYEIKGDFFEAKGCEYCHH
                     SGYQGRELISECLYIDEEIAQVIREGGYKNKILELAKVKGFQSMFEQGLQKAKEGITS
                     IDELLRVLNEAL"
     gene            complement(26251..26847)
                     /locus_tag="SB143_000179"
     CDS             complement(26251..26847)
                     /locus_tag="SB143_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEF9748757.1"
                     /translation="MNIEERVRELEDKYKRYLLKKYFKFLFIFAILIACMLISFFMVQ
                     DFYKQKALALEALEYKKTLNWQITQAQIANEKNKILQERLSKDESKDELEEELKTQID
                     IYSKILNISDLKRSFYQNPSYQKAMNLATQYYENKDYEKSIFWSLKANDIDRKNSDSW
                     VLFAKAKQALGKDEEAKQALDTYVSYYGLIEFDKEIDD"
     gene            complement(26844..27440)
                     /locus_tag="SB143_000180"
     CDS             complement(26844..27440)
                     /locus_tag="SB143_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9748758.1"
                     /translation="MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLAL
                     YHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGMYSPNVLELIRIYSDEMSFVLSS
                     HKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
                     RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK"
     gene            complement(27433..28851)
                     /gene="mshL"
                     /locus_tag="SB143_000181"
     CDS             complement(27433..28851)
                     /gene="mshL"
                     /locus_tag="SB143_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEF9748759.1"
                     /translation="MIRLIFIKILFFTNLIYAMECQKRLFDININEDLSIEESLKELA
                     SYCSFSVVIKDTIAKEKLKAIQSSINIHQMSLDEIFKLFIEEQDLAYKFDGKILKISA
                     LQTRIFKINYITSVREGQSITKASVDSKPRQSEYYSAFEDNEDNMIKSMEKFDFWQNI
                     EKEIMILLSSSHENYDIKAPIVNPNAGLVIVTGTHSQLQRVKAYLQKLESRLKKQVII
                     DVSILAVNLNKNHSSGINWQNFNIGLNSQTSDNTNSFMQIQNGQGFVKNLGLRANLNF
                     DSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESSKGTENGTTVSESY
                     SNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKL
                     SSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNITEIVFII
                     TPSIVDNTHIPSLRELGFKYNE"
     gene            complement(28829..29140)
                     /locus_tag="SB143_000182"
     CDS             complement(28829..29140)
                     /locus_tag="SB143_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEF9748760.1"
                     /translation="MCFCTLLSYEDFEEYFKILNTKQNVELGNLQNPFFNPTFEKIKD
                     IKIIAIMLDRVKIDNKWYKKGDKIGEAVITDITTKEIILRYDTLDFKIAFKNNDKINI
                     Y"
     gene            complement(29164..32724)
                     /gene="nifJ"
                     /locus_tag="SB143_000183"
     CDS             complement(29164..32724)
                     /gene="nifJ"
                     /locus_tag="SB143_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEF9748761.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGTVHGSLQTGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLCA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYEHFDRLLDRKALLEFRNSALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNGYMREISKITGREYKPFTYYGHKEPERIVIAM
                     GSVTQTLEEVVDHLNSKGEKVGIVKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDIKSAFYGKENAPIIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLQTGEKISLGDESAIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPSWKNLE
                     IKEKEQINAYKGTEFVEKIVKPMNAAKGDELPVSTFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKESTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIIANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRYRIENIMNENMQKVPNALA
                     ALFKEWIANKDKGAESVEIKDKMIPILEQNTDIKAVQDILNLKHFLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYSHLIKAIMAAEAYDGPSLIICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTMVGKEPDWDLYESFLMNEVRYNSL
                     KKSNPEHAKELFERNKKDAQRRYRQLKRIAMADFSDEVES"
     gene            complement(32828..33466)
                     /locus_tag="SB143_000184"
     CDS             complement(32828..33466)
                     /locus_tag="SB143_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEF9748762.1"
                     /translation="MKKTILFDLDGTLIDSIDAILNSFQGAFKILGLTPKNNEEIKNL
                     IGYPLEHMFKILYHEKAHLSQEFVLAYREIYSQIYLEQTTLLPKAKEALELAFEIADL
                     GIVTTKGGKFTPLLLEHLGVKKFFKTLITLEDITNPKPHAEPILLALEKMQKTKENAY
                     MIGDTILDIQAAMAANITPLALSCGYGDEDELKRYSMVFPSAYKSVLYIKND"
     gene            complement(33466..34464)
                     /gene="cadF"
                     /locus_tag="SB143_000185"
     CDS             complement(33466..34464)
                     /gene="cadF"
                     /locus_tag="SB143_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEF9748763.1"
                     /translation="MRKLLLCLGLSSVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLELGLEHYSDVKYTNSTLTTDITRTYLSAIKGIDLGEKFYF
                     YGLAGGGYEDFSKGAFDNKSGGFGHYGAGLKFRLSDSLALRLETRDQISFHDADHSWV
                     STLGISFGFGAKQEKVVVEQTKEVVNKPQVVTPAPAPVVSQSKCPEEPREGALLDENG
                     CEKTIYLEGHFDFDKVNINPAFEEQIKEIAQILDENVRYDTILEGHTDNIGSRSYNQK
                     LSERRANSVAKELEKFGVDKSRIQTVGYGQDKPRSSNDTKEGRADNRRVEAKFILN"
     gene            complement(34585..34974)
                     /gene="rpsI"
                     /locus_tag="SB143_000186"
     CDS             complement(34585..34974)
                     /gene="rpsI"
                     /locus_tag="SB143_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEF9748764.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGIDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            complement(34977..>35078)
                     /locus_tag="SB143_000187"
     CDS             complement(34977..>35078)
                     /locus_tag="SB143_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uL13 family ribosomal protein"
                     /protein_id="HEF9748765.1"
                     /translation="LPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
BASE COUNT        12077 a         6142 c         4905 g        11954 t
ORIGIN      
        1 ttcattttta aaataattta atataccctt tttataaaaa aaatcaaaag catggagatt
       61 aaaattttta atattacaac tatcaataaa tttgaaattt tcaaacaata attccttaaa
      121 aagctttttc tcttcattat ttaaaatagc tagtttttca ggatttaaaa tcaaagtttt
      181 tatttgccaa aaaatatcat ataaaacaac attttgcaca aagtaaggaa cttttgttat
      241 ttttatatct ttaaaaagat ttaaataacc aaaatttgga accatagtat aatagtcctt
      301 gattttatct ttaccatcaa gagtagaatt ttgctccacc ctttttctat aaaaatattt
      361 gactgttggt aagaaagcgc tttttagatt gatattatcc aacaaatatt catttataaa
      421 tttagcatct tcaaagttgg gttttagttt ttcatcaaat aataatttat caagatatcc
      481 aatattcata aaacaactag cagcagataa ttgtataaag ttatcaagat tacaattttc
      541 tttaacttgt ataccatttt tgaatttaaa atttaaagca tggttgtctt tatatagctt
      601 ttgcttttca tgataaaaaa ttatattgca tcctatcata caaatatcat tagctttgtg
      661 ggttactaaa aatttatcca cttcataaaa ataatttcta tctaaaaaat cgtccggatc
      721 agtgaaggta acccaaggaa tttgatagtc attttcttgc atatatttta agcctaaatt
      781 tctagcacta gcttgtccgc cattttcttt gtaaagatag acgatatttt taggatattt
      841 tttttggtat tttttgatta tttgtgcaga attatcaata gaaccatcat ctactaatat
      901 cataaagata ttttttttaa aatcaagtct ttggtttatt atggatttaa aataatcatc
      961 taaatatttt tctacattat atacagctga tattatagcg tattgagtga agcctttgtg
     1021 ttttttgggt ttaaaattag aaaagagttt tgcaagatat attctaaaaa aaccatctaa
     1081 tataacttta atgaattttt tattttcatt tgaaagtttt aacatctaca gtctttttaa
     1141 aaaaagtaaa atatgatcta aagtaaattt ttttggttta taactatcaa ataaaacact
     1201 atatttatct atacttacgt catatttttt acaaagctgc tcatagaatt ctattaagct
     1261 ttcctcattt tcttctagac tagaatcaag tttaatcttt tcttgtaaaa gatttgaatt
     1321 cttatgatat tgtttaaagt atccgaataa tttatttctt ctatgatgaa ggtgaaaaac
     1381 aatcttttta tcaaaaaaat atggtaaacc attaaaagcg agatattttc taaaaccttc
     1441 acttaaaagt ggtgctttat aaaatttatt aagcattaaa tctttagttg gtttaatgac
     1501 atttttatag agtgcaagct ttatcataaa ttcaaaatct tctccaccat gacccataaa
     1561 ttcttcatca aagccaccca cagcaaaata atcagttttt ttcataaaga tacttgcact
     1621 cggagaagct aaatgtaaat acaaatcttt tctaaacgcg atatatttat caaacatttc
     1681 ttctctagta tgcttaaaaa cttccctaga accttttttt gaaagatata ggcaaaataa
     1741 aattataaga ggatttttat cactcttgat atcattaata caaccatcgc ttaattcttc
     1801 atcaaacaaa caatcgacat ccataagata aataaattcg ctcgagcatt gttctaccgc
     1861 tctgtttcta agcaaacttt gacaaatcaa tcttgtataa aatttccctg aaactaattt
     1921 aacattattt tttttagtga ttctcttaag atatttatca aatatacttc cgcgatcatt
     1981 atgcccaaaa acgatctcga cctcatcact ggatcttttt aaaatacttt taactttttt
     2041 tagtatatca aaaggtctaa gatctaaatc aataggaata atgacactat acttatactt
     2101 caactacaca ttccctatcg cataaagctg tatgatgcct accactttat cttctttaga
     2161 aacgacaatt tctttgatct tatactttaa catgatctct tctgcttcac ttgccatagc
     2221 atcagcatcg accactttag gatttatact catgatctct ttagctttaa aatcaaatct
     2281 tggtttatca ttagccttta aagcgcggcg caaatcccca tctgttataa tacctactag
     2341 cttttcattt tcaagcacca aacaaagtcc taatttccca cttgtcatca catcaacaag
     2401 atcattaaat tcagtatcag gatgaactat gggaagattt tttgatacca ttaaatcgct
     2461 taccctagtt aaaagctttc tacctaaact tccacctgga tgaaaaagag caaaatcatc
     2521 aggtctaaaa tttctagcct tcatcaaagc tgctgctaaa gcatcaccca ttactaaagt
     2581 agcggttgtc gaagacatcg gagcaagttg caaaggacat gcttcttctt ttatggatat
     2641 atttaaaaaa atatcccctt gttttacaag ggtagagttt tcctttccac acatagctat
     2701 aagagggatt ttgcgttttt taattgcagg gatgattttt aaaatctctt cagtttcacc
     2761 tgaatttgaa atagctatca aaatatcatc aggagtaagc atcccaagat ctccatgcaa
     2821 agcctctcct gggtggataa aaaagctagg tgttcctgta cttgctaaag ttgcagctat
     2881 cttagcccct atatgacctg attttcccat gccactgact atacaacgcc cctttgtatg
     2941 aagcataagt tctatggctt tagaaaaatt ttcatccaaa tttaaagcca aatcctctat
     3001 agccttagcc tctgtcgcaa aaacttcttt agctatcttt aaagcatcaa ttttcattgt
     3061 atatcatcct aaaatcatca taaattcaat actacattcg ttgcaacggc aatttgatat
     3121 aaaatttgcg ttagcataga aaaaatttgt aaattctcac tctcaacctt aggcaaaacc
     3181 aagacagaat cgcccggcat catatcaaca cttccactat atctttgagc cttgccattg
     3241 ttgcgtataa caagtacttt ggaggtatct gctctttctc cataacctcc tgcaagattg
     3301 atatagtatt ttaaattttc acccttatta taaacaaaag ctcctggtaa agtaacctca
     3361 ccttggacta tgataagatt gtttttacta gggacattga tagtatcacc ctcttctagt
     3421 ataacctctg cataagattt tggtttatcg ataacaattt gccccttagg ctctaattct
     3481 cttgctcttt ggataaactc aagtatcaat tttgcttgtt ctgctttgat agccgcaccc
     3541 tgagaagtca ctgaaggact agttaaagca agggtttcaa gctctttaag ctgagcattg
     3601 ataagatctt tttgagtttt ggcaacactt tttctaaaaa cttgcaaggc attcatgtcc
     3661 gattgcccat ttgctacaat cagtcttgaa acatcctcta gcgtcgttcc ttttcgaact
     3721 accaaagttt taagcccgct atgctcgcca ttgactgtta tactgatatt ttgcgaaatg
     3781 tattcgggat taaactgcac ctcatcaccc gtttttaata aaactttaga aaattgcatt
     3841 ttattataag cacttacttc aagcttatga tcatttccat aacttcttag tatcgcatta
     3901 gttactatag gtttggcgcc tgctacgcgg gctaaatcaa ataaagtttt aatatcattt
     3961 gcaagctcaa agcgaaacgg tctttgcaca tctccattta caaaaacata actttggaca
     4021 ttgcccacca aaaccacatc gccacttcta aaaggaaaaa gatccatttg acccttaagt
     4081 aaaaaatcat acaaatctat ctttttaatc acagcattat tgcgtaaaat ttgaatatct
     4141 ctaaaacttc cgtattctaa atttatcccg cctgccttat caagatactg gatcacagaa
     4201 tccgagctaa gaccttgata aagccctgga gcattaacac tgcctgtgac aaaaacgcta
     4261 acattttgat aagcattcat atccgcataa acaaaaacat tatttttata aattttattt
     4321 acctgagctt taatcacact tacaagagca ctatttttta cccctagcaa atttaccgct
     4381 cctaccttag ggataaaaat atttccttga gaatccacaa ctaaaatttg ttcaaattca
     4441 accgcacccc aaattttaag actgatttga tctcctactg cgattttata gtcaggatta
     4501 taaacccttt gagtgtaatt tttgaaattt ccattaaata attccgcgcc aaatacagga
     4561 atttgagtag gggcactctt actgatattg ttttctaatc cttgaacaaa gctagttgtg
     4621 ctagaatttc cacttgagct aatctgtgaa acatctatag ctccaaaaca aaaaatacaa
     4681 cttaaaaata aaattaatat ttttttcatt ttaatacttg tgctcctcta taatcatttt
     4741 aacaaattta atcaccccaa aaatcaaaga taatacaata aatgctgtta agatattata
     4801 aattttttca gggtattttg cactttgggg tacatcaggg gtttgaacga taactagttg
     4861 tttaatcttt cttaaagctt ctatccttgc actttcataa gctttcaaag ccgcctcata
     4921 agcactttga gcaaagcctg cttctatggt tagatcttga aatttagcag ctagatcatt
     4981 gagtttttga gaagaattat cggctgaaat tttagatctt tctttgacta attgtttttt
     5041 taaagcagtg atttcagcct ttagggttac aatttcaggt gcgtgatcat tcatatagct
     5101 ttgcatggtt aaaagcttag cttctctttg agcgatatct gattcaagtt gagttactaa
     5161 gccagcttta gcttctgctt gttttagagg atcaaaaact ccgtatttat tttgaaaggc
     5221 aatcaaatcg ttttgcgctt tttgatagcg ttctttatat tttatcaatt cttcttccgc
     5281 aaagctcatt tgttctcttg ctgccttgtg tgaaatttca ttgataaatt tttcactttc
     5341 ttgcataatg gttttggcga ttaaatgcgc agattctgga gtaaatcctt caacctcgac
     5401 atttaaaagt cctgttttat catccacatg tactttaacg cggctttgat aatattttaa
     5461 ataactttct atagagctag aacttgataa gctaaaaaat aaatcgatat attgctcatt
     5521 gtaaagtttt tttagatgaa ttttttcatc tagaatcttt aacatatcaa gcgattctat
     5581 atagccttgt aaaaacttga tatcttcgct agtattggaa gttgcggtta aaagcgacaa
     5641 aaccccgctt gcttgagtgc ttccagtagt tgattttacg ctcatagtaa tagtgcttac
     5701 ataacgatct gcagcgacta aagtataata aataactaca aaaatcatca agatccatac
     5761 tatcttgaaa gaatcaaaaa tacttagatc tttaatttta ttaaaaaatg tatttatttt
     5821 tgtcattatt ttttcccttg atagacggct atgccctcat ctacatcatc ataaacagta
     5881 actttcccat tttccataaa gataatttta tcacaccatt ctttaatttc agccacattg
     5941 tgtgaaacca tgatcacttt agattggctc aatctttctt tatataattt atggcttttt
     6001 tctctaaatt taggatctcc tacagctcct gcctcatcga ttagataata atcaaaatca
     6061 aaagccatgc taagcccaaa agctatccta gcactcatac ccgaagaata agtattcata
     6121 ggctcatcaa aaaatttgcc aagctctgca aaatcttcta caaatttgac tttttcatga
     6181 agctcttcac ccttatagcc ataaacccta gctacaaatt tagcattatc tctagctgtt
     6241 aaggatcctt gaaaagctcc gcttagcccc aagggccaag aaaatttttt attggtgatg
     6301 atttttcctc tatcgggaag ctcagagcca cttaaaagct tcattaaagt tgattttcct
     6361 gcaccatttc tacccattaa acctatacta caattttcag gaaattcaaa agtaaaatct
     6421 ttaaaaacat aatgccttcc gccattaaat aaaggataag atttggttaa atttaaaact
     6481 tttatcatgt tcttctcact gctgttaaag cttgtctatt gtaataatat aaaaaaagtc
     6541 ccacaaaaga agtgcatata atgcaaaata taggataagt ataagtataa tcatcttgca
     6601 aaggataatt ttcaaaaaaa ttaaatctta aaagctccat aacatgaagc aaaggattat
     6661 aatataatat atcaagaata ggttttggca taagccaagt aggaaagata acacccgaac
     6721 cccaataaaa tactatacta aaataattaa gcaaagtctt taagggctct aaaaaatatc
     6781 caatgatagc aaaaaccata cccaaagcaa aacccgaaca cataagcaaa aatatacaaa
     6841 tcatcacgct taaaaaatgc ctagggataa cttctaatct aaaaaaccaa cccactataa
     6901 acaatactgc tacaaatata acaaaataaa tacaaaactc aagcaaagtc ctagcgataa
     6961 aaacatgtat gggttttaca ggtttgtaag caaaaagagc taaatttgct cctatgccat
     7021 tcataagctg agtgactata cttctaaaca taaaataagg aactataccc gaaattaaaa
     7081 acataaaaac agaaatccct tcaggcatta gttgatgatg gtattctctg agaatagtca
     7141 caatggtagt aagtattaaa atgacactca taggctcgcc aataacccaa aaataaccca
     7201 gatatttatt tttaccaaat ctagtcttta attctctaaa aaacaaagcg tgaattacat
     7261 ttaacattta ttttctatac ttaaaaaatt tttacataaa ctataattat aactcgtttt
     7321 tttaaacaaa tcataaaatt ttatctttat aaaattcaag ctttttgcca aatcctaaag
     7381 cattgtttgt aaatttcagc caatcaagtt ctaaagcata aatttttgca ctcttatcca
     7441 attttgcaaa aggaaatttt gaaaaataaa tttttatttg ctccttgctt gcgcttttaa
     7501 atttggcctt agcttggata ccttttaaaa aagctatctt gctttcttta gctatattta
     7561 gtgctatgct aggattttcg ctagctaatt ttatatgctt cgtatcttca tgtgaggcga
     7621 tgataaaagc taaatttttt tcatcaaaga tataaaaagc attggctata taaacacctt
     7681 tttcatcact catagcccaa gataaaagct gctcattttt tataaattct aaaattcttt
     7741 catccattgg gtaaaattat actaaatttt tttaaaaaat aaccgatttt tcattttaag
     7801 catatcaata caaggggagc aaaatgcaaa ttgatgcgag caaaaatcaa agtttttcaa
     7861 tggactatac aacaaaaagt ggcaaacacc tagccttgtc tatgtatgat aatcaaagct
     7921 taagttatag caatgatgaa gaaggtaaaa gtcttaatct taaacgccaa tatggtttta
     7981 gcttcacttt tgaaggctct aaactcaccc aagctgatct tgatgagata aaaaatgcaa
     8041 tgaaagaagt cgaacccatg ataaaagact ttttggcaaa ttctaaagta ggagaattaa
     8101 aaccaaaaga aatcatagaa tcagcaatgc aaatggcaaa tgtattgcca acgccaaatg
     8161 atgaaaacca tcaaaatgct atcatgaata attttacaaa taaacttagt gatttactca
     8221 aacaaaatca aagcaatgat aaagatatca atacatccat gctcgaagat agcaaaaaac
     8281 tactagatga agtgttagag caaatgaaaa agcagcttga aaaacagcaa gaaaaagcta
     8341 aagaaaatca aaataatgca gaaaaaggtt taaatcttta cgcttaaatt ttataataaa
     8401 tcataaaaaa ttaaaaaagg cacaagatga aaaatgttga aattttagaa aatatgctca
     8461 agctccaaaa aaaactcaat gatgaaacta atggtttaaa ttgggaagaa ggttatacca
     8521 aggaaggaaa gctcatcagc tggagacgtt gtatttatat ggaatgtgcc gaacttatag
     8581 attcttttgc ttggaaacat tggaaaaata tttcaagccc tactaattgg gaaaatgttc
     8641 gtatggaaat cgtagatatt tggcatttta tcctcagtct tttacttgaa gaatatacaa
     8701 ataaaaagga taaaaatttc caagccatag cgaatgaaat catctgtgtt agtgtttttc
     8761 aagatttttg caaagaagag ggcaatccta gcgaaaatga tctttatagc attttaaatg
     8821 acatagaact tatcattcat aaatgcagtg gctttggatt tagccttgga gagctacttt
     8881 ctaattattt tatcctagct atcaaatgcg ggcttaatct tgaaattctt tataaagcct
     8941 atataggaaa aaatatttta aatattttta gacaaaacaa tggctacaaa caaggtactt
     9001 ataaaaaaat ttggaatgga agagaagata atgaagtatt ggctgaaatt ttagagcaag
     9061 agcttgattt tgataccatt tataaaaaat tagaagaata ttacaaaaag gcataaattg
     9121 agaattttaa gacttgcgat taaggatttt ttcacacttc aatttttaaa atttgcctta
     9181 attccacttg tttttagttt tatcttgatg gtatttttgg cagtttttgg cttttcggct
     9241 ttgcttaatt attttaattc tttatttagc gttggagagg attcgttttg ggcgtggttt
     9301 tatacccttc attttgtaca aattttaatc accatcataa gttttttatt ttcaggcttt
     9361 gttataattt ttgcttcagt tttcctagcc ctttttatca cctcttttct tactcctctc
     9421 attgtaaaac aaatcaataa caaatactat catcacgaag tacaaaacat ctcaaatatg
     9481 tatataattt ttgaaatttt caaaatattt ttaaaattta taggaatttt tttactttgc
     9541 accttggctt tgtttttgcc ttttatcaat ctttttgtgt attatcttgc tttttattat
     9601 ctttttcaca agcttttaat gcttgatata acaagttcgg ttttagataa agaaaatttt
     9661 aaaattttta acgctcaagc atctaccttt gaatttaaat tcagcacttt atgtttttac
     9721 ttgctctcat ctatcccgct tttaggaatt tttttgcaag tattttttgt gattttttta
     9781 acacatttag cttatcaaag aattttaaaa ttagaagtta agggatgaaa tatcgatttt
     9841 gtgattgtat aaataagctc tcaaaagtct tggtatttta gcgattctgc aagcttcttt
     9901 aaattctttt ggcaattttt gacaagtttc atatttaaaa acgatagcct tttcatcctt
     9961 atacacgatg cctatttttc cacctaaaac acaatcgccc ttcaaaaact cttttctttg
    10021 tgctgcgctt aaaagcaaac ctttcatttt tacagcctta gcaatcaaac tttcattttt
    10081 aggacaaatc ataagacctt gaatttcttt tatagactcc aaatcataga gtttttttct
    10141 atcctcatca agataaaaaa aacttctttt taaaccttga tgaaatttac tcacaaaggc
    10201 attggaaaaa ttttttctta tataatttct aaaatatttt tcattctcat tactctcatc
    10261 ttgaaaataa aaaatatcat tctcttttaa ataacttaaa atttcatcct tactcataaa
    10321 aagcaaaggg cgtaaaagtg tataatttga gcgcttttca cactcttgca tgcctaaaat
    10381 ttcagccaaa cccgccccac gagaaagctg cattaaaaac cactccaatt gatcattgag
    10441 atgatgagct aagataagat tgctataatt ttgctcaaga caaatttttt caaagaaatc
    10501 ataacgaaaa tccctagctt ctttttcaaa attccccttt atcacaggag cactttttat
    10561 aaaaattttt ttatgaaatt ttaaggcaag ctccttggct ttttgctctt ctaaatcgct
    10621 attttttcgt gttttataat taatcatcac aagatcaaaa tcaatctttt tttgcactaa
    10681 aaaacgaaaa agtgcactag aatcacttcc ataagaaaaa gcgagtaaat ttctaccctt
    10741 ttttaacaag gataaaattt catctttaat ttgcatctat ttttcttaaa gccttggcta
    10801 tgagcttttt atcaacattt tgaatgattt cgcattcata aatttgtccc atttccaaat
    10861 tcccgcattc gctttcattg ataagaattt ctccatcaat ctctctatcc catcttaaat
    10921 ctttagctgc gataaaaaac tcaccctcgc tactctcacc tgtacaaaca actaagcgct
    10981 tttttcccac ttctttttca aaactttttt ctatgacttc atctacaatt ttttctatga
    11041 ttttaagcct tttattgatc actttaaaag gcacttgctc catatcaaaa gcagctgtat
    11101 cttcttcttt agaatacgca aaaacactca ctctatcaaa accaaaatct ttgataaatt
    11161 cacaaagctc ctcaaaatcc gcatcacttt cacctgggtg ccctacgata aaacccgtac
    11221 gcaaaaagct atttggcaca cttttcatca aatttaacat ttctttaagt cttgtgctat
    11281 ttgctccgcg tttcataatc ttaagcatat tatcactaat atgttgtaaa ggcatatcaa
    11341 aataatttac aaaaatttta gaagctataa tgcgcttgat caaagcttca ctcgcacttg
    11401 taggataaag atataaaatt ctagctgctt taataccctc gatcttttct acctcatcaa
    11461 tcaaacgtat aagcccatct ttttcaccct tatcaaacaa ataagaactc gtatcttgtg
    11521 cgataaaaga aaaatcctta taacccctag ccaccaaatc tttaagctcg gctataatgc
    11581 tagaaatttc acgcgatttt aacttaccct taaaacttgg gatcgcacaa aaagaacatt
    11641 tttgattgca accttcagcg atttttataa aagcatgcga attagaacct gtgatgatgc
    11701 gtttggagtt ttcaccctgc aaataagtcg aatttgaaaa taaattggtt tttttaagta
    11761 tcatttcatc gattctttca taatcaccca caccagtaaa aagatcaact tcaggaagtt
    11821 ctttcataag ctcttcgcgg taacgctgca tcaaacaacc cgtcacaacc aaaagcgaat
    11881 ctttttttct ttgctcatgc aaatctaaaa tcgcattgat actttctttt tttgcactat
    11941 ctataaagcc acaggtattt acgattaaaa catcagcttt acttggctca tcgcaaagct
    12001 cataagcgct aagacgccct agcataatct cactatcgac taaattttta ttacagccta
    12061 aagacataag ataaagtttt gacatttttt tcctatatta aagttttatt ttgatataat
    12121 ctttgatttt aaaaatataa ttatagcaaa gaaattttat ggataattac gaatttagcg
    12181 aacttttaaa aactttaaaa aacaaagtcg gcaacatagc ctctatcatc aagcctgaaa
    12241 acatccaaac aaggcttaaa gagatcgaag agcttgaaaa ttctccttct ttttggaatg
    12301 atgtcaagca agcaggaatc ataggcaaag aaaaaaccaa gattaccaat ctactaaaaa
    12361 actacgaaaa tgctttcaat gctctaaatg acgcaagcga acttttcgat ctagccaaca
    12421 gcgaaaacga tacagaaacg cttgaagctt tatttaatga tgcgccaaaa cttgaagata
    12481 ccatcacaag tcttgaaatt tccatgcttt taagcggaga aaatgatggc aaaaatgcta
    12541 ttgtttccat tcatcctggt gcgggtggaa cggaaagtaa tgactgggca agcatgcttt
    12601 ataggatgta tttaagattt tgcgaaagag aaggttttaa agtcgaaact ttagactttc
    12661 aagaaggcga agaagcagga cttaaagatg tgagcttttt ggttaagggt gaaaatgctt
    12721 atgggtattt aaaagctgaa aatggaattc accgcttagt aagaacctct ccttttgata
    12781 gcgcaggacg ccgccacaca agcttttcaa gcgttatggt aagccctgaa ctcgatgatg
    12841 atatagaaat agaaatcgaa gaaaaagata taagaataga ttattataga gcaagtggag
    12901 cgggtggaca acatgttaac aaaacagaat cagccgtaag aatcacacat tttccaaccg
    12961 gtatagtcgt acaatgtcaa aacgatagaa gccaacacaa aaacaaagcc accgctttta
    13021 aaatgctaaa atcccgcctt tatgagcttg aactcatgaa acaacaagat agtgctaatg
    13081 caggtgaaaa aagtgagata ggctgggggc atcaaatccg ctcttatgtg cttttccctt
    13141 atcagcaagt taaagataat cgcagtggag aagctttttc tcaagtagat aatatccttg
    13201 atggggatat caaaaaaatg atagagggtg ttttgattgc tttaaaatca gagtaacagg
    13261 cttaaaaata agtaatttcc gcaaaatgtc ggtataaaaa gaattagaaa gatagcggga
    13321 ttttcccgct tgttttattt taaactccac gccctgtagc attttctatt ttgcaatttt
    13381 ccactttgct atcttcgcaa attaaagccc aaaattccct tttatcgctc ttatctttat
    13441 tgacactaaa tatcatatat tgataacctt taacactgcc ataaagtcgg aagtcttttg
    13501 attttaaata tttgtatctt ttttcatcga aattttttaa agtttctgga gaataaaaat
    13561 ccatattagc attattgttt tttgctttaa ttaactcaaa acctttttcc acaaaagaat
    13621 ttaattcgtt tttattaaat tttccacaaa acgatcatca ccgccacaac ctataatcaa
    13681 agtcatagct cctaaagcca aagcacttgt taaaattttt ttcattttta ctcctatttt
    13741 aaaaattaaa ttaatataat tgtacctaaa tttaaaattt aaatatcatt tttgtaataa
    13801 atttttaaag taaaaatcac attaaaattt aactcgcaat catttcattc aaacaaattt
    13861 ttatgcaaaa tttcttctaa aactacagta gcgtaagagc ctttttgcaa gaaaaactcc
    13921 atgcaaaaat gggctttttg ctcatcataa cgccatttaa catcttctaa atacgaccac
    13981 ataaagcgtc ttgagccttg cattttagct ttaaattcca aagcgtcttt aaaaatttca
    14041 ttttccaaat ttaaagccag tccttgacta gcctcataag ctttagcacc gattaaaagt
    14101 cccatagcac tgatatctct tgccttaaaa cgttcaagtt cagcacttaa atcctcgcat
    14161 aaaaagcatt ttccaaaagg ataatgcccc aaaacctcgc cttttaaaag cttaaaaaac
    14221 tgctcttgtt ttttaagttc tttagcttct tctttggaga tgctataaat ttgtgccaat
    14281 tctttttcgg taaaatcatt tgcaaaatgc gataattcca ctcttttact caaataacga
    14341 ttaaaaagct cgctttgaaa agcagagatt aaaaactcct tcattttgac atttttcatc
    14401 tttttaccac gtaaaatttc aagcccttct ttgtaattgt ccccaaattt tccaaagcgt
    14461 tgataaccaa aataatttgc aaaaccctgt ttatctaaat ttatcaaagc ctgctctagc
    14521 tttaaagcat cgctaggcaa aacttttttt aagcgtataa aaaaggaatt tccttttaaa
    14581 tggcctattc ttaatttatt ttcatgaaca aaagtttcta aaattttaag cttaggatga
    14641 gaaaaattag ccaaaaaact ctcgaatttt ttaggcatag aaaggtattg aaaagtagag
    14701 ccttgcttgt ctttaagccc agcatagcca aaatcacgca tcttaacccc acttacttcg
    14761 cttaaaattc ttaaagcttc attggtgctt aaatcttttt tattgatata caagataaga
    14821 tgttcgccct tgccactcaa ttcatacaaa ggcctttcac gcactacaaa atcatcgcta
    14881 tttttgctaa aatacgtatt aataggactg tgttttaagc tatataaagg cttaaaaatg
    14941 gtgttctctt ccgctaaatt catattttcc cttcactgct tttccaaaga tattgagttt
    15001 tacgccatgt tttcttgcga ttttttctat ctttggatac tctttttcat caaaagcaaa
    15061 taaaatttca tattcttccc cgctataaag cgtataatca tcaagtgttt taaaccaaga
    15121 aatgccgcat ttattttgtg ccaaaagtct tgataagtct ttactcaaac catctgaaat
    15181 atccatagca caagatataa aaggggcgat ttcataaaaa aaatcaggcc ttaattttgg
    15241 ttttataaat acatgatttg aatttaaagt gccgccattt tgcaaaattt caagccctct
    15301 taaactttta cccaaaaccc ctgtataagc aagcaaatgt ccttttttta gtccttttct
    15361 aaaaatagcc ttatttctca ctttagaaat gatagtaatg ctaatatcaa tcttatcatt
    15421 actaatcgta tcaccgccta taattttgat attaaatttt ttagccgttt ttaaaaaacc
    15481 tttttgcaag gccttaatct catcttcacc taggctattt ggcaaagcaa gccctaaaag
    15541 tgcgtatttt ggcttagcat tcatcacaat agcgtctgaa atatttacca gcattgcctt
    15601 tgtagcaatt tgctctaaag tcagccattc tcttttaaaa tgcacatttt caaaaaacaa
    15661 atccttacta aaacaccaat catcaataat agctccatca tcgccgtttt tttcatttaa
    15721 aaaagctttg attataaaat cttccttatt catgaaaaga ttttataaaa tttcctttta
    15781 aattctagtg aattttaaaa aaattttata taatacttat caaaaggaaa aagcatgaaa
    15841 aatttagaac ttagaatttt tagatttgat aaacaaaaag attatgaggc ttattataaa
    15901 ccctatgttt ataataatta tgaaaatttt gccactcttt atgatttact tttgcaagtg
    15961 caaaatgatg atatttattt tgattttgaa aaaaatgata aaagctatat cgtagtcaat
    16021 aaagaatttt taccattaaa tacaccttta gatatcttgg tgaaaaaata cgattttaat
    16081 ctcatcatag agccactaag caccaaaaga tcagtaaaag acctcattat caacaaagat
    16141 aattttttag aaaaatttaa ataccttgct ccatttgcaa atgaggaaga taaaaagctt
    16201 tatgaaaaat atgattattt gtattattca agcgaaattt tagacttttt acctgaatat
    16261 atgggcgatg cagtgtttta tctggcttca aaaatgatag aaaaatatcc tgataaaaaa
    16321 ataaaaattt taaagacaat ttgcgatacg caaaaaggca tcttttatca tcttacaagt
    16381 aaaaatgaag atttagaaaa tactatcaaa aatttacaaa aagaaatcat agatttaaaa
    16441 cttatcaacg aagcggcttt ggaatttgac ttgccaaaaa tcaatgcttt tgataatgaa
    16501 atcaaagaac ttggtgaaat taaatatgat tttaatgatt ttaatatcgc atgttatggt
    16561 tttaagatca aagatgatat aaaatcaaaa atcaaagctc attttatctc ttatgaaaat
    16621 agcgataaaa acaatggatt ttcactactt caactaaacc ctgaacttag ctataaaatg
    16681 gcagcaaata tcatccttga tgcttacgat agtggtgctg attttatggt ggtaaatcaa
    16741 gcaaaagatt tttatatgtt tgacacttgc tcgaaaaaac ttatgcaaag tagtggaaga
    16801 gaatttaagg atttttatgt tttaagttat tttgaattcc tttctttaat ccaaggcatt
    16861 aaaaatcctt ctttgcaaaa tcatgacttg aaagtaagtt tgacatgaaa atttctttag
    16921 aatgtaaaga tttgatcatc gaaaaagcct tagagctttt tttaaaagag catttagtga
    16981 tgaaaaagga ctgcgatttt atcataagcg atgaaaaaat ctctactcaa aagcctttat
    17041 ttatcatcgc taaaaattca ccctttttaa gtttgccttt tagcaaagaa gctctcatga
    17101 attccttaaa tgaattcgat agcgcgctaa aagcaacagc tcaaaaacta gccgatgaaa
    17161 gaagaagagt gctagaagca aggatagata aaatcgcaag tgaatttaaa agagactatc
    17221 aaagcaagat agatcttgct atcagcgagc ttaaagataa actggttaaa gctttaatgt
    17281 atgaataatg aatttataag cgttaaggat tttttacaag gtaagaaaaa tatccatttt
    17341 aacgactcta cccagcccaa taaaaaagaa aaaaccaaaa aaaccttgcc taaattatat
    17401 acaagcatag aaagtggcat atataagggt aaaaaactgc ttttacctag tcttcaaacc
    17461 acaagaagca ctaaaagtat cgtaaaaaaa tgtgtttttg atgtcttaag atcagattta
    17521 agaaataaaa tttttatcga agcttttgga ggaagtgctt taatggctgc tgaagcttta
    17581 agcaattacg ctcttaaagc ttatgctata gaacttgatt taaacgctta taaaatcgct
    17641 ttagaaaatg ctaaaaatat agatacaaac ttaaaagtaa ttcatgctaa tacttttgaa
    17701 atactgccta aacttataga agattctaaa gaagatatca ttttatatct tgatccgcct
    17761 tttgatataa gggagggttt tagtggaatt tatgaaaaaa tttataattt tttagaaaaa
    17821 ttaaaattag atgctttatt ttgtatcatt ttagaacata attctaaaat caaaactcct
    17881 gataatatag caaattttac caaaataaaa gaaaaaaaat tcggatcaac tagtcttagt
    17941 ttttatcaaa aaaatattct agaagaataa attttaatct tggaacactt attgcttctt
    18001 ttattctaac tatcagatta aaggaagaat cgatgagggt tttaatattt tttttacttt
    18061 tgatgacaag tgtttttgca acacaaataa aagatatagc caataccgta ggcgtaagag
    18121 ataatcagct cataggttat ggtcttgttg taggattaaa tggtagcgga gatggaacaa
    18181 gctcgaaatt tacactacaa tccatatcca atcttttgca gggtatgaat atcaaagtag
    18241 atcctaacga tatcaaatca aaaaacacag cagcagttat ggtaacagct aaacttccag
    18301 cctttgcaaa aagtggagat aagctcgata tcacagtttc atctatgggc gatgcaaaat
    18361 ctttgcaagg tggaacactc ttgcttaccg cacttcgtgg aatcgatggg gaaatttatg
    18421 ctattgcaca aggttctatc tcaacaggag gattaactgc tagaccagga ggagcaggct
    18481 ctcactctac tgctgctact gtgatgggtg gtgctaatgt agaaagagaa attccgcaaa
    18541 attttagcca agatagtgat ttaaccctaa gcttaaaagt agcagatttt aaaacagcaa
    18601 gcgatataga aagaatttta aatactatat ttgaagaaga tgtggctaga gctgttgatt
    18661 ctcgtacggt aaaacttaaa aaacctgaag atctttctaa tgttgatttt atggcaagag
    18721 ttttagagca agatattgct tatactcctc aaagtaaggt aattatcgat gaaagaacag
    18781 gaacggtgat tgcaggagtg gatattgagg ttgagcctgt tttaatcacc cataaagata
    18841 ttaccataaa aattgatcca aacaataatg cagcagcagc tcaaaatgag atcgatatga
    18901 aagatggtgg ctttgtagac cctaattcaa ataccctaag aatcaacaat gctaaaagca
    18961 cagttgcaaa cattgctaga atgctaaaca aacttggagc aacgccaaat gatatcattg
    19021 ctatcatgga aaatttaaaa agagcgggtg ctatcaatgc agatttggag atcatctaat
    19081 gaaagtagat aattttttaa gcacttatag tatgaataat gctttgcttg aacgcgcagc
    19141 taaggcaaga atcttagaat ctgactttaa gatcaataac aatgagataa taacaaaaac
    19201 caaagaagat gaagctttaa aagagcaaac cgatgctttt gaagcttttt ttctaaaaca
    19261 agttttagat gtatctttaa aaactcaaaa ttcacttttt ggaaaagatg cgagtgatga
    19321 aatttattca tctatgtata atgataccat gagtaaagcc ttaagcggtg gcatgggatt
    19381 ttcaaaatta ttatacgatt ttttaaaaga aaggggttaa gttttttaat ttttagtcga
    19441 tatagtttgt agaggattta tataagatca aaggaggcag aaatgatcaa tcctatacaa
    19501 caaagttatg tggcaaacac cactttaaat acaacaaaaa cagacaaaga aactaaaaca
    19561 aacgacactc aaaaaacaga gaatgataaa gctgcaagaa tcgcagagca aattaaaaat
    19621 ggtagctata aaatagacac aaaagctaca gctcaagcaa tagcggattc tttaatttga
    19681 tttcattctc ctttttttga gttaaaaagg agaatgaaat gcttaaacaa agactcgatg
    19741 aagtcaatgc catcttaaca aaactcatag aattaacaca agaagatata gaaaatataa
    19801 aaattgcaaa acacgataca gttgcttcaa gtgttgaaga aaaaaacaag cttatctctg
    19861 aatttagtgc tgctaaaaaa aaacttgatt ctgctttagt tgagcttaat aacagttcta
    19921 ccaaaggatt gagtgaattg ctcgatgaag aagataagca aaaattagat gaacttaaaa
    19981 agaacttaca aactcttcat actacaaata aagaatacgc gaaatttgtt cttattgtta
    20041 aagattttct cgatggcttg gttaataaaa tgtttgatat caatgatgga acaaataatg
    20101 cttatggaga taaaaagact actccagagt caatttttaa aatcaatgtt taaggattaa
    20161 agatgggtat ttttggaact ttatatacag gggttactgg tttaaaggca agtgaagtac
    20221 aaattgcaac cacaagtaat aacatctcca atgcaaatgc aaccttttat actcgtcaaa
    20281 gagtggtaca aactacaaat ggctttgtta caacaggtgg agtacaagtt ggaacaggaa
    20341 cagccgtaga aagcatagtc cgcttgcatg atgagtactc atactataag cttaaaggtg
    20401 cttcaaatca gttagaatat acaaaataca tggcctcaac cctagaagaa atcgctcaac
    20461 gctttcctga tttgcaaagt actggaattt tacaagactt agaaaattac aataaagcat
    20521 ggaatgattt tgcatctaac cccaatgaaa atgccaccaa aatagccctt gtaaaagctt
    20581 ctcaaacctt gacagaaagt gtaaataata cctttgctac cttagataaa atccaaaaaa
    20641 aagtaaatga tgatattaaa aatacagttg atgagattaa tagaattggc gaagaaattg
    20701 ctactataaa taaacaaatt tatggacaag aagccttacc aacagaacac gcaaatgaac
    20761 ttagggatag aagagatgaa cttgagctta ctctttcaaa gctagttagt gcagttgcaa
    20821 gcaaaaatga aatcaatcaa gacaatcgcc ttgatacaac catcactgat ccaggacatc
    20881 aatacaatct cagcatagaa ggttttagta tagtagatgg tgttaatttt catcctttaa
    20941 aacttgatta tgatgataaa aataaagctt atagcattta ttatgaaact ccagatgaaa
    21001 aagttcgcga tctaactgca aaaattaacg gtggacaact tggagctcaa cttgacttac
    21061 gcggaagaaa ttatagcaaa agcgaaggaa aatatagcga tggaatcatt caaggctata
    21121 tggattcttt aaataccttt gcaaaaacca tgatcaatga aaccaataat ctttacgcaa
    21181 gctcagcaaa aagctcagta acttctgatt atcttccagg acttacagag gacattcctt
    21241 tggtaaatta tgatagaacc atacagcctg gaagttttga tatagttatt tatgatgata
    21301 agggcgataa aaaacttaca aaaaccatta ccgttgatgt aaataccact atggaagata
    21361 tcatgcgtca aatcactgct aacacagatg ataatggcaa caataatgca aatgatgatg
    21421 ttgatgatca tatcaatgca agttttagct atgatgcaaa aacaggggat agtttatttc
    21481 aaatcaatgc aaaatcaggc tttaaagtag ccatagaaga taagggaacc aattttgccg
    21541 gtgcatttag cataggagga ttttttagcg gaactaatgc tagcgatatc aaagtaaaag
    21601 attctatctt aaatgatcca agcacagtaa gagcaagcct aaacggtgtt gatagtggaa
    21661 atgatatggc aaataaaatc atacaacttc aatatgataa agtgaatttt tacaatgaag
    21721 atggaacaat tgataatctt actatggaag agtattaccg caagcttacg ggtaaaatag
    21781 gctctgatgg tgaaaacaat aatgttgtaa atgcgagtaa tcaaacgctt tataactccg
    21841 tttatagcga atatcaatct aaaagcgggg taaataccaa cgaagaatta gccgctctca
    21901 tacaatggca atcaagctat ggtgctgcag caaaaatcgt aaccacagta gatcaaatgc
    21961 tagatacctt attagggctt aaatcctaag ctctagcggt atctagtgaa aaattttact
    22021 ccacttaaaa acaaacttga ttctttggtc gaagaaaaaa ataccaacaa agctcttttt
    22081 gaaagtcctg atcctttgca agttgctaaa tttcataatg atgaatttat cgctttactt
    22141 tgtgctttat ttgcttatgg gaatgctaaa aatatagtca attttttaaa aaaacttgat
    22201 ttttctttgc ttgatttaag ccaaaaacaa attcaaaaag aacttaaaaa tttaaaatat
    22261 cgctttcaaa atgaaaagga tatacaagaa atttttctca cttttgcaag gcttaaaaat
    22321 gaaatttcac tccatgaact ttttagtaca gcctatcaaa aaagagaaaa tactaccgat
    22381 gcaatcctag cttttttgca aaaaatcaag actttaaatt cgtattcgag ttatggttat
    22441 gattttttct ttggtaaaat ttggcaaaat acccctactt cacctcttaa gcgttataat
    22501 atgtatctaa gatggatggt tagaaaagat gagcttgatc ttggactttt taccaaaatt
    22561 cacaccaaag atcttttaat ccctcttgat acacatacac ataaaatttc cttgacttta
    22621 ggtcttctaa agcgtaaaat atacgactat aaaagcgttt tagaactcac gcataattta
    22681 aaaagattgg atgcaaatga tcctataaaa tatgactttg cgctttatcg tttggggcaa
    22741 aataaagaac ttagcaaact aaaggagtaa aaatgggctt tgaacatcta gatacgattt
    22801 attattttgt attgtttttt gtagctcttt ttgcaggatt tattgattct attgtgggtg
    22861 gaggtgggct tatcacactt cctgcgctta tagcctgtgg aattcctgca catctttctt
    22921 tggcaaccaa taaactccaa agtgtctttg gctcttttac agcgacttta acttatttta
    22981 aatcaaccac cctacctcat cttgcttatg gtattttttt cacagcctta ggcgcagcca
    23041 taggaagtta cagcgtgctt tttgtaaaag atgagcattt aaaacttatc attttgattt
    23101 tcttaacttt gactttttta tacactgctt tgcgtcctag tttgggtaaa cacgagagtg
    23161 aagcaaagat aaaaaatatc aaattttttc atttaatttg tggtttaact ttgggttttt
    23221 atgatggttt tttagggcct gggacgggtt cattttggat ttttgcttgc gtaatgctac
    23281 tgggttttaa tatgaaaaaa gcaagtatta atacaaaaat tctaaatttc accagcaatg
    23341 tcgttgctct ttttatcttt ttgtggcaat atgaactttt atggatagta ggtttgctta
    23401 tgggtgtagg acaaatttta ggggcctatc ttggttcaaa attagtactt aaaaccaatg
    23461 gcaaatttat aaaaaccttg tttttaatcg tcgtaggtgc tactatcatc aaggttgctt
    23521 gggattattt ttcttaaaaa tttactcctg agctaagttc ccatataggt aaaaaaattc
    23581 caagtgctaa aaacaatact aaaatcgcaa cccataaagt cattataggt tctaaaaagc
    23641 ttaaaaactt gtccattaaa ttttcacttt tgtttttata atatttcgca atctcctcgc
    23701 tcaaaaactc aagcttagaa cttttcatag ctatactcaa catagaaaaa accaaaggat
    23761 caaaaagatc tactttttta aaggcgtgac ttatttcaag gccagaatcc ataaatgttc
    23821 taatttcttg ataatacaat aatacctttt tattatttaa ggccaaagtg gctaatttaa
    23881 aagcttccaa aagagaaatg ccgcttttta aaagtaaaga gaaaatcata aaaaaagaat
    23941 aattttgctg ataaataata aatttagata acaaaggaag ttttaaaagc aagctatcgc
    24001 aaaaatatga aaagaaataa tattttctat acaaaaataa agtaagaaat aaaataagtg
    24061 cgatcaaaca aaacacaagc aaaatatact tatccaaaaa attataaata taaattataa
    24121 gctcggttat aaagggtaag gctaaattta aatcctcaaa taaatcttta aaattaggca
    24181 caacaaaaag catgagtaaa acaaaagccg cgcacacact taaaaaaaca atcaaaggat
    24241 atcttaaagc ttttttgact ctttgttcat tttctacatt attttgtctt aatcttgaaa
    24301 tttgcatgaa aatttcactt aattttcctg tgttttggga agttttaata agggctaatt
    24361 ccgcatgagt aagcccaaaa tttgcatttt caaaagcaag gcttaaattt tgtcctaaat
    24421 ttaaattatc gcaaagcttg gcaatcatct tgtgagaata tattttatca agctccttta
    24481 aagcatcttt tatgctgatt cctacttcgc aaagcaaaga taattcttga aagaaaagga
    24541 taaatcttgc atcatctaat cttttaaaac ttgctttttg tatctctttg atatttaaaa
    24601 tttcccattt tttagcgata gcttttgctt gagcttcgtt taaattttta gcccttaaat
    24661 gctttgtctg ttttgttttg cctttaatct cgagctcata aagcttcatt aagtaccctt
    24721 aaaagctcat ctatgctagt tataccctct tttgcttttt gcaaaccttg ctcaaacata
    24781 ctttgaaaac cctttacttt agcaagctct agaattttat ttttataacc accctctcta
    24841 ataacttgag ctatttcctc atcgatatat aaacactcac tgatgagttc tctaccttga
    24901 tatccactat gatgacaata ctcgcagcct ttagcttcaa aaaaatcacc ttttatttca
    24961 taaaccttag tgcttttttg cttgcattta ggacaaagct tgcgcactaa acgctgggca
    25021 atgacaagcc ttaaagcaga agcgatcaaa taaggctttg cactcatgtc aattaatcta
    25081 tctatggtag aaatggcatt atttgtatgc aaagtactta aaagcaagtg ccccgttaag
    25141 gaagccttaa tcgctatatc aaggctctcc tcatctctga tttctcctac catgataata
    25201 tcaggatctt gtcttaaaat ggctcttagg gcattattaa attcaagtcc tgcttttgga
    25261 tttagcaaaa tttgctgaat taaaggcatt ttatattcta taggatcttc cacagaaatt
    25321 attttctttt ctatgctttt tagctcattt aaacaagcat ataaacttgt actttttcca
    25381 cttcctgtag gacctgttag taaaatcatt ccgtaagggt tgtatagggc tttttttaga
    25441 attgtaagat ttttttcgcc caaatttaaa ttttctaaat ccaaaatttc ttcgttgtgt
    25501 tttaaaattc ttatcacaat gctttcgcca ttttgcaaag gcaaagatga aatcctaaaa
    25561 tcatatctat tttctttgat tttaagctca aaatttccat cttgagcctt tcttgattct
    25621 gcaacattaa gctgcgataa aaatttaata tgaaaaacca aagcctcata aatatctttt
    25681 tcaagacaag caaattcgcg taaaattcca tctactctaa atcttatcaa agtatcattt
    25741 tctcttgctt ctatatgtat atcgctagga ttaaattcaa gaatttcatc gagtataaaa
    25801 tcaaaaattt gactgataca actttgctca tcttgacttc tattttcttt ccattctaat
    25861 ctaagattgg tgcttaaatt tttaagtttt tctctaactt gaagtttata taaaaatttc
    25921 ataatcttaa attcgcttgc gatcaaaact tctatattct taacttcata aaaaattcta
    25981 atctcatcta aaagctctaa agaacaaggt ttggagcttg ctatatgaag tgtattttct
    26041 ttacttaaaa tgggcaagat tttaaattta aaaagaaaac tacatggaaa tttttcaccc
    26101 aaactaagat caagttcctc taaagtagaa taagaaatat ttttatcact agccaaagct
    26161 tttagaaaaa tttcactatc gattttatgc tcacgatcaa tttgctcaag ggtgatttta
    26221 ccattaatat aatcttcaaa taaaaatcgc tcaatcatct atttccttat caaattcaat
    26281 caagccataa taacttacat aagtatccaa agcttgctta gcctcctcat cttttcctaa
    26341 agcttgttta gccttggcaa ataaaaccca tgagtctgaa ttttttctat cgatgtcatt
    26401 ggcttttaaa gaccaaaaaa tagacttttc ataatctttg ttttcataat actgagtagc
    26461 taaattcata gctttttgat agcttggatt ttggtaaaaa ctccttttta aatcacttat
    26521 atttaaaatc ttagaataaa tatcaatttg agttttcaac tcctcttcta actcatcttt
    26581 gctttcatct ttggataatc tttcttgtaa aattttattt ttttcatttg caatttgcgc
    26641 ttgtgtaatt tgccaattga gtgttttttt atattctaaa gcttctaaag ctaaggcctt
    26701 ttgtttgtaa aaatcttgca ccataaaaaa gcttataagc atgcatgcta tcaaaatggc
    26761 aaagataaat aaaaacttaa aatatttttt caataaatat cttttatatt tatcctcaag
    26821 ctcgcgcact ctttcttcta tattcatttt aaaaatccct gttctaatgc gcttagtctt
    26881 aaaatataat cttgactttt tttattgttt aaataggtgt ttaattcgca aaaactttga
    26941 agtatcttgt ctaaatacct taaatttcct tgataaattt tcataagaaa ttttaaagat
    27001 ttttggggaa agtcttgatt aaatttcatt ttgatataat tgcttaattc atttatatca
    27061 ggtttttgaa gccaaaaaat agcactaaaa cgacttttaa aatactcctc ttcaaaaaga
    27121 ttgatttttt tatgcgagct aagcacaaaa ctcatttcat cgctataaat ccgaattagt
    27181 tctaatacat taggactata catccccact tcatctagta tgataatttt tcgtttttta
    27241 tcttgtataa aatgatgaaa atctttttca tctgtaaaaa tttcattggt aaaatcttca
    27301 ttatgatata gcgcaagtct ttgcaataaa acacttttcc cactaccgct tttaccccaa
    27361 agtaaaatca aagctttatt ttttaataag gcattgattt gatcaaaaca ttcttgtcta
    27421 aaagcaatta tattattcat tgtatttaaa tcctaactcc ctaagactag gtatatgtgt
    27481 attgtctact atgcttgggg tgatgataaa aacaatttct gtgatattgg aattttcatc
    27541 ttcacttcta aataaagaac ccaaaatggg aattttagat aaaaaattaa cagaattatc
    27601 attttgtgag cgattatgag agataagtcc gcccaaaatt aaagtttgat tattttctac
    27661 ttgcaccaca cttgaaagct ttttttgaat tgtatcaggc gcgatagtgc ggggttcttt
    27721 ttgtctttta ttgtcctctg gatatttaaa gtcgcttaga cttggattga tcctaagcat
    27781 gatttttcca tcatcagaaa tttcgggcaa aatattaagc aaaattccta tgaaaataga
    27841 ataattacta taactctcac ttacagttgt gccattttca gtacctttag agctttcttt
    27901 tacttgataa ttcacagtat cgcctatgga aataatggct tgttgattgt ttaaagccat
    27961 taatttagga ttagataaaa cactggtttt tccactttga gataaaaaat tgacaatgga
    28021 atcaaaattc aaattcgctc ttaaacccaa atttttaaca aaaccttgac cattttgtat
    28081 ttgcataaaa gaatttgtat tatcgctcgt ttgagaattt aatcctatat tgaaattttg
    28141 ccaattgatc ccactagaat gatttttatt aagatttaca gcaagtatac tcacatctat
    28201 aataacttgt tttttaagac gactttcaag cttttgtaaa taagctttta cgcgttgaag
    28261 ctgagaatgc gttccagtaa cgataacaag cccagcattt ggattgacta taggtgcttt
    28321 tatatcatag ttttcatgtg aggagctaag caaaatcata atctcttttt ctatattttg
    28381 ccaaaagtca aatttttcca tacttttaat catattatct tcattatctt caaaagcgct
    28441 ataatactca ctttgccttg gcttagaatc caccgaagcc ttggttatgc tttgtccttc
    28501 tctaactgaa gtaatatagt tgattttaaa aattctagtt tgcaaagcag aaatttttaa
    28561 aatcttgcca tcaaatttat aagctagatc ctgttcttct ataaaaagtt taaaaatttc
    28621 atctaaactc atttggtgga tattgatact gctttgaatg gcttttagtt tttccttagc
    28681 aattgtatct ttaattacca cgctaaaaga gcaataacta gcaagttctt ttaggctttc
    28741 ttctatgctt agatcttcat tgatatttat atcaaataag cgtttttggc attccatggc
    28801 ataaataaga ttggtaaaaa atagaatctt aataaatatt aatcttatca ttgtttttaa
    28861 acgctatttt aaaatccaaa gtatcatatc ttaaaataat ttcttttgta gtaatatcag
    28921 taatcacggc ctcccctatc ttatcaccct ttttatacca tttattatca atctttactc
    28981 tatcaagcat aatagcaata atttttatgt ctttgatttt ttcaaaagta ggattaaaga
    29041 atggattttg aagatttcca agctctacat tctgcttggt gtttaaaatc ttaaaatatt
    29101 cttcaaaatc ctcatatgat aacaaagtgc aaaagcacaa tgttatactt aaaaaatatt
    29161 ttatcagctc tcaacctcat cgctaaaatc agccatagca attcttttaa gctgtctata
    29221 acggcgttgt gcatcttttt tattgcgctc aaataattct tttgcatgct ctggatttga
    29281 ttttttcaaa gaattataac gcacctcatt cattaaaaag ctttcataaa gatcccaatc
    29341 aggctctttt cctaccatag ttaaaggatt tttgccttgt tcttctagtc ttggatcaaa
    29401 agtataaaga ggccaataac cgcattttgt agcaagttca ccttgctcgc ctgaatatcc
    29461 aagcccaccc ttgataccat gagcgataca aggagaatag catataatca aagaaggacc
    29521 atcataagct tcagctgcca taatagcttt gattaaatgg ctataatttg ccgtagaatt
    29581 aacttgtgct acaaaaatat aaccataagt catagcaatc tgacccaaat cttttttctg
    29641 tataggtttt cctgctgcgg caaattgcgc aactgcacct gttcttgaag attttgaact
    29701 ttggccccct gtattagaat acacttctgt atcaagcact aaaatattta cattttcacc
    29761 gcttgctaaa acatgatcaa gcccgccata acctatatca taagcccagc catcaccacc
    29821 aaaaatccaa tgagattttt tacttaaaaa atgttttaaa tttaaaatat cctgaacagc
    29881 tttaatatca gtattttgct ctaaaatagg tatcatctta tctttgattt ctaccgattc
    29941 tgcacctttg tctttattag caatccattc tttaaacaat gctgctaaag cattaggtac
    30001 tttttgcata ttttcattca taatattttc aatgcgatat cttgtatttt cagttgcaat
    30061 tttcataccc aaaccaaatt cggcattatc ttcaaacaat gaattccccc aagcagggcc
    30121 atgtccattt ttcacgcttt ttctataagg agtagaagga gctgaacctc cataaatcga
    30181 actacatccc gtagcattag cgataatcat tctttcacca aataatctag taatcaaagt
    30241 aatataagga gtttcaccac aacctggaca tgctccatgg aattcaaata aaggttgagc
    30301 aaactgagcc cctttggtgc tttctttatt taaaatatca tctttgtaag taatttcttt
    30361 aaataaataa tctgcatttt cttgctcacc aaaatccatt tcttcttgaa gaggaaccat
    30421 aaccaaagat ttttccttag taggacactc atgcacacaa agctcacagc ccgtacaatc
    30481 aagtggagaa acctgaattt tgaagctcaa tttttcacct ttagtaccct tagcttctaa
    30541 agcgtgatct tttactcctc ttggagcttt agccatttct tcatcattga ttaaaaatgg
    30601 tctaataacc gcgtgcggac atacagaagc acattgatta cattggatac aattagcctc
    30661 tatccatctt ggtaccatta ccccaacgcc gcgtttttcg tattcggtcg ttccatgctc
    30721 aaagcttcca tcttcataac ctaagaaagt agatacaggt aattcatctc cttttgctgc
    30781 attcataggt ttaacgatct tttcaacaaa ttcagtaccc ttgtaagcat tgatttgttc
    30841 tttttctttg atttctaaat ttttccaact tggatcaact tctactttta caagtccatc
    30901 tgctcctaca tcaatagctt tgtaattcat ctctacaata gcatcgcctt ttttgctata
    30961 agacttataa gctaattctt tcatatattt ttgagcatct tcataaggaa tgatttttgc
    31021 aagtttgaaa aaggcagatt gcataatagt atttgtgcga tttccaagtc ctatatcacg
    31081 agcaagtttt gtagcattga taatataaaa attcacttct ttttcagcca aagtcttctt
    31141 aactgcatct ggaagttgtc ttatagtttc ttcagcattc caaatactat ttaaaaggaa
    31201 agttcctcct tttcggattc ctgctaaaac atcataaatt tcaagataag ccgctaccga
    31261 acaagcgatg aaatgtggag ttgaaacaag ataggttgag cggattggtt ttttagaaaa
    31321 tcttaaatgg cttcttgtat agccccctga ttttttagaa tcataagcaa aatacgcttg
    31381 tgcataaaag tctgttttat ctccgatgat tttaatagaa tttttattag cacccacagt
    31441 accatctgca cctaacccat aaaataaaca ttctatagcg ctttcatctc ctagtgaaat
    31501 tttttcacct gtttgcaaag aagtatgagt aacatcatcg ataataccca ctgtaaaacc
    31561 atcttttgga ttatcaagtt taagattttc aaataccgct atcatttgtg caggatcaac
    31621 atctttagaa gaaagtccat atcttcctcc tacgataata ggagcatttt ctttgccata
    31681 gaaagctgat ttaatatcaa gatataaagg ctctccaaga cttcctggct ctttagttct
    31741 atctaaaaca gctatttttt tcacagattt tggcataaca tcaaagaaat attttaaact
    31801 aaaaggacga tataaataaa cctttacaat ccctactttt tcacccttag aattaagatg
    31861 atcaacaacc tcttcaaggg tttgagtcac agaacccata gctataacaa ttctttcagg
    31921 ttctttgtgt ccataataag taaatggctt atattctcta cctgtgattt ttgaaatttc
    31981 tcgcatatat ccatttacaa catctggtaa agcatcataa aaacgattgc ttacttctct
    32041 tgtttgaaaa taaatatcat cattttgtgc tgtaccgcgt gttttagggt tttcaggatt
    32101 taaagcacta tttctaaatt caagcaaagc tttgcgatct aacaatctat caaaatgctc
    32161 ataatccatt acttcaactt tttgaatttc atgcgaagtt ctaaaaccat caaagaaatg
    32221 caaaaatggc actcttcctt taatcgcaca taaatgtgca actccagcta aatccatagt
    32281 ttcttgtaca gaatgcgaac aaagcatagc aaaaccaatt tgtcttgcag cataaatatc
    32341 ttgatgatca ccaaagatag ataaagcttg cgctgctaaa gaacgcgctg ccacatggat
    32401 tacacagggg agtaattgcc ctgcaatttt atacatattt ggaattttta gtaataaacc
    32461 ttgagaagct gtataagttg tggttaaagc tcctgtttgc agtgatccat gcacagtacc
    32521 tgctgcacct gcctcacttt gcatttcaac gatttttact ggaacaccaa aaagattttt
    32581 tttacccgca gctgcccaca tatcagtata atcagccata ggagagctgg gtgtaatagg
    32641 ataaataccg gctacttcag taaaggcgta tgcagcatat gcagcggcct catttccatc
    32701 catagttttc ataattttac ccatagaaac cttcctttta ttattaattg ataattttta
    32761 taatttttcg gccaccaatt tactataaat tctcttaaaa ggcgtttaac aaaaacttga
    32821 agttagttta atcatttttt atatataaaa ccgatttata ggcacttgga aataccatag
    32881 aatagcgttt taactcatct tcatctccat aaccacaact taaagctaag ggggtaatat
    32941 ttgctgccat tgctgcttgg atatctaaga tcgtatcgcc tatcatatag gcattttctt
    33001 tagttttttg cattttttct aaggctaaaa gtatgggttc tgcatgaggt tttggatttg
    33061 ttatatcttc aagtgttatt aaagttttaa agaatttttt cactcctaaa tgctctaaca
    33121 acaagggagt aaattttcca cccttagttg tcactatacc taagtccgca atttcaaaag
    33181 ctaattctaa agcttctttt gctttaggca aaagagtagt ctgctctaaa taaatctgtg
    33241 aataaatttc acgataagct agaacaaatt cttgactcaa atgcgctttt tcatggtaaa
    33301 gaattttaaa catatgctct aaaggatagc ctataagatt tttaatctct tcgttatttt
    33361 ttggagttaa tccaaggatt ttaaaagctc cttggaaaga atttaagatg gcatcaatag
    33421 aatcaatcaa agtgccatct aagtcaaata aaatagtctt tttcattaat ttaaaataaa
    33481 tttagcctct actcttctat tatctgctct accctcttta gtgtcattgc ttgagcgtgg
    33541 cttatcttga ccataaccaa ctgtctggat acgactttta tctacaccga atttttcaag
    33601 ctcttttgca acgctgttag cgcgtctttc tgaaagtttt tgattgtatg atctagaacc
    33661 tatattatca gtatgaccct ctaaaatagt atcatatctt acattttcat ctaaaatttg
    33721 agcaatttct ttgatttgtt cttcaaaggc tgggttgata tttactttat caaaatcaaa
    33781 atgtccctct aaataaattg ttttttcgca accattctca tccaacaaag caccctctct
    33841 tggttcttca ggacattttg attgtgagac tacaggagct ggagcagggg ttacaacttg
    33901 aggtttatta actacttctt ttgtttgctc cactacaact ttttcttgct tagcgccaaa
    33961 accaaaacta atgcccaaag ttgaaaccca actatgatct gcatcatgga aagaaatttg
    34021 atctcttgtt tcaagtctta aagctaaaga atcactaagg cgaaatttta aacctgctcc
    34081 ataatggcca aatccgccac ttttattatc aaaagcgcct ttagaaaaat cctcatatcc
    34141 cccaccagct aaaccataaa aataaaattt ctcacctaaa tcaatgcctt taatagcact
    34201 caaataagtt ctagtaatat cggtggtaag agtagaattt gtatatttta catccgagta
    34261 atgttctaaa cctagttcta attgatcaag ccaaaaatca tcaaaatgat accctagtct
    34321 aatccctggt gcatagcgat tatccatatc taaattacct tcaaaataat tgtaattcaa
    34381 agtaggagtg atttcaaatt ttacattgtt atctgcacca aataaaacgc ttgacaaccc
    34441 taaacatagc aataactttc tcatcaaaag cctttcatag ataaattcac ttaagtagta
    34501 cgaagttcaa ttatatcata aaatataaaa aaataaatag taaatagaga taaaatataa
    34561 aaagcgggaa aatcccgcca aagattaacg tttagagaat tgtgggcttc ttcttgcttt
    34621 gcggcgtcca tattttttac gctcaacagt tctgctatct ctagtaagaa gtcctttagg
    34681 tttcaataaa gctctaaaat cagcatccat agccgctaaa gctcttgaaa ttccgtgtct
    34741 taaagcttct gcttgagcac tataaccacc acctaaagtc gttgctttga tatccattga
    34801 agtttcttgc ttagttacaa gtaaaggctg aactacttta agcttgatcg cttcatgtcc
    34861 accaagccaa gtatttaaat cgataccatt aacgctgatt ttaccgctac ctggttttac
    34921 ccatactttt gctatagcag tttttctttt acctgttgca tatgttgttg ccatgattat
    34981 tttccttctt tagcaatttg cgcagtgtgt gggtgctcac tacccgcata aatttttaat
    35041 tttttaagca tcgctctacc caaatttgtt ttaggaag
//
LOCUS       DARAII010000005        34449 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.005, whole genome shotgun sequence.
ACCESSION   DARAII010000005 DARAII010000000
VERSION     DARAII010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34449
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.005"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..159
                     /gene="rpsE"
                     /locus_tag="SB143_000188"
     CDS             <1..159
                     /gene="rpsE"
                     /locus_tag="SB143_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="located at the back of the 30S subunit body where
                     it stabilizes the conformation of the head with respect to
                     the body; contacts S4 and S8; with S4 and S12 plays a role
                     in translational accuracy; mutations in this gene result
                     in spectinomycin resistance; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEF9748766.1"
                     /translation="PASEGTGVIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATI
                     KALTMLKG"
     gene            164..556
                     /locus_tag="SB143_000189"
     CDS             164..556
                     /locus_tag="SB143_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEF9748767.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIAKPYVINVEKITAVKELNEITIESIKSVHKISKSV
                     TKIKLIGASAKDLASKIKDENISVTGSK"
     gene            556..1821
                     /gene="secY"
                     /locus_tag="SB143_000190"
     CDS             556..1821
                     /gene="secY"
                     /locus_tag="SB143_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEF9748768.1"
                     /translation="MNKALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDGMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMIENLNMFIALCAISMLAGTMLLM
                     WIGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFVILALILIT
                     IGVIIYVELGERRIPISYSRKVVMQNQNKRIMNYIPIKINLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTANYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFNFGGTSVLI
                     VVQVALDTMRKIEAQIYMNKYQTLNAIGL"
     gene            complement(1883..3142)
                     /locus_tag="SB143_000191"
     CDS             complement(1883..3142)
                     /locus_tag="SB143_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9748769.1"
                     /translation="MKKKSYKFHPNDTKLDKKMVEITEKSGFKIAVFSMAAMTMLGSV
                     VISSALPAINRHFEDILIQSGANMQTNFTLAHLDILVRLVLTLPAIFVMILSPFAGIL
                     MDKLGKLKFVFPAMIVWTLAGVSGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLIAMI
                     YLFEPRKFKFYNHTKIEEKTNYWKFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KFIGISMSISALCYGIFSLSYKYIMRFLSIKMIYIATLFIVGCSFLILFLIDDFIAVL
                     FALALLGMGGGIMLVNNTAYLFSICPENARARAYGILASCIFLGQFLSPIISQPIVRQ
                     LGLVDAFLIWAILNFIVCIVFLFLKQR"
     gene            3371..5473
                     /gene="topA"
                     /locus_tag="SB143_000192"
     CDS             3371..5473
                     /gene="topA"
                     /locus_tag="SB143_000192"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEF9748770.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKEYEVIASKGHIRDLPKSSFGI
                     KIENDEFIPEYRITSDHSVLVKELKEKAKGAKEIYLATDEDREGEAIAYHIAKAIGKD
                     ENVLPRIVFHEITKNAIENALKNPRKLDMNSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLNAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPTKANVY
                     TTKAKGAQEAHEAIRPTNLNFTPEIAAKFLDKDELKLYTLIYNRFLACQMNPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGENLKIQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVKIDKKQLIPSEVAFSVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKANWQETLKEFYYPFMRKVEEGKTKIASQKTV
                     TKLGENCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKNESKNEAEVSVSKAKAKG
                     IGITCPSCKEGEIVERLSKRGKFYGCSAYPKCNFISKYKPSDEKCEECGENLVIKELK
                     KGTFLECLKCKIKKEIKD"
     gene            5476..6312
                     /locus_tag="SB143_000193"
     CDS             5476..6312
                     /locus_tag="SB143_000193"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEF9748771.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLETSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPKLSADEALKIISDTKEALPN
                     TVVMVAGGREVVLQERQYEIFKAGAGAIVIGDYLTTKGEEPSRDIVKLKEMGFTFASE
                     CH"
     gene            6293..7468
                     /locus_tag="SB143_000194"
     CDS             6293..7468
                     /locus_tag="SB143_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEF9748772.1"
                     /translation="MHPSVIDSQGLIDLQILIVIALCLLFSPHIAKILRLPISATEII
                     LGALMAYFGFIGKSENFTILANVGFYYLMFIAGMEVNLRAFFNMDKEIAKKSFFYIIL
                     LYSFSSAIVWVFELSFVFVLIIPVMSVGLLSLLYKDFGKECYWLNTAMIVATLAEVVS
                     IVLLTIAGAFLREGTNIIDVVQSILYLNIFLGLCLLGFKVLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMIITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSSFG
                     HGFLIPIFFIHIGTTFDLKMILEYEIVFDAILLMFVMVGLRILCASVFWKKIGFQNMV
                     LFGLSHSMPLTLLIATATLGYSGKVISEELYSALILTALFEAIVVMSAIKFISNIKK"
     gene            7598..8866
                     /locus_tag="SB143_000195"
     CDS             7598..8866
                     /locus_tag="SB143_000195"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEF9748773.1"
                     /translation="MSNSVTVTDNRNGKSYEFPIYDGTTGPSVVDMGSFYKQTGMFAY
                     DEGLTSTATCKSKITYIDGEEGVLMHRGYPIEWLAENKLFLDVVHLLLYKELPSNERL
                     EAFRYELKKRSYIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVREEYM
                     EMAARVVAKIPTIVAAAYRYKNGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACISAGIGALWGHAHGGANEGVIRM
                     LEEIATVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALQDDYFVQRNLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQETLKIVRPRQLYLGETSKI"
     gene            8940..9704
                     /locus_tag="SB143_000196"
     CDS             8940..9704
                     /locus_tag="SB143_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEF9748774.1"
                     /translation="MFKLDNLLKTAIDASNEASKAILKERKNLQIWQKQDQSPLTSAD
                     LASNEILNDILGKTDIKILSEEGLLSQEESKNLQSYWLIDPLDGTSGFLKGSDEFCIM
                     ISLIHEDRPILALIKNPSKGDIFYAHQNTRVYKNDKILDISEQDFIDNQSKALLSVNH
                     LSKEDENFAKKHNLTPINIGSGLKFCAILEGRAGVYKRFEKLNSWDIAAGDFLVNQKG
                     GFMGTFSKEMILYSPLNYKCEPFICVSKKSFLNIYT"
     gene            9741..10502
                     /locus_tag="SB143_000197"
     CDS             9741..10502
                     /locus_tag="SB143_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748775.1"
                     /translation="MKIFLILFMSILLNSSLFANNFSQKKIIKLEQQESFEIIDLQQN
                     VEKQNLDQQKGIFDSSSLMSKKESIRKDNDVDFAIAMSFRQNFGYALDGFNISAKEFS
                     TLFAKNLVDNLRLNFVNSAANGVYQDLRTLARFSPKDSKLLNVSPFLKKEKDKSQIYA
                     KFTDYLVVVNLDDFYVNITNYFVAITKNAVANINFKVVSTSNGKILTSKNVRLNFALH
                     AQDPRVNYQELVNQMPNMLAEVINKELEKLNLTVQ"
     gene            complement(10507..10680)
                     /locus_tag="SB143_000198"
     CDS             complement(10507..10680)
                     /locus_tag="SB143_000198"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748776.1"
                     /translation="MQININPEEMTKWQITYELKRILSSLDPITAHEIAKELRQEFLS
                     IEELQDRIRQIND"
     gene            complement(10789..11565)
                     /locus_tag="SB143_000199"
     CDS             complement(10789..11565)
                     /locus_tag="SB143_000199"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEF9748777.1"
                     /translation="MIIDFKKYSSVKIGGEFEVEVLEQIREFDGFLIGGANNLLISPK
                     PKNIGILSDNFNFIEILEQNKDFLHLRIGCKTKASQMYRFSKENNLYGFEYLSKIPGT
                     LGGLLKMNAGLKDECISQNLVKIATSKGEILRENIDFSYRFCPLNMPFFWAEFKLGFG
                     FDKIKDENLKNARNNQPSGASFGSIFKNPKGDFAGRLIEAVGLKGFSKGDAMLSVKHA
                     NFLINKKNASFDDAIFLIELAKKKVFEEFGIKLEEEVIII"
     gene            complement(11562..11831)
                     /gene="fliQ"
                     /locus_tag="SB143_000200"
     CDS             complement(11562..11831)
                     /gene="fliQ"
                     /locus_tag="SB143_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEF9748778.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLIISIFQATTQI
                     NEMTLSFVPKIILVVIVIIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            complement(11843..12706)
                     /locus_tag="SB143_000201"
     CDS             complement(11843..12706)
                     /locus_tag="SB143_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEF9748779.1"
                     /translation="MKKTITIAHSPDADDIFMYMAIKLGWIGNDFDYKNTALDIQTLN
                     DLALKNEFDATAISFGLYPLIAKEYALLRTAVSFGEGYGPKLIKKQNTHLKRNFKVAL
                     SGANTTNALIFRMKYPEARIIYKNFLEIENAVLSGEVDAGVLIHESILEFDSSLCVEA
                     EIWDIWLELAQENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIANSNRRILAPMLM
                     ERNLIRVNEEKLDTYLNLYANKNSICMSETQFKAVDVLFKLGYDYKFYDKIIHAKDYL
                     IPSEYEEFRNS"
     gene            12816..13847
                     /gene="recA"
                     /locus_tag="SB143_000202"
     CDS             12816..13847
                     /gene="recA"
                     /locus_tag="SB143_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEF9748780.1"
                     /translation="MDDNKKKSLDAALKSLDKAFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGIPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVDTDNLYISQPDFGEQALEIVETIARSGAIDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKEIQNSMGIEGMIS
                     SSEDEEGEE"
     gene            13847..15091
                     /gene="eno"
                     /locus_tag="SB143_000203"
     CDS             13847..15091
                     /gene="eno"
                     /locus_tag="SB143_000203"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEF9748781.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVVLSDGSMGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVSNVNETIADEILGLDALNQAQLDDTLRELDGTNNY
                     SKLGANATLGVSMATARAAANALGVPLYRYLGGANASILPVPMCNIINGGAHASNNID
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANLGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKEGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDVFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            15157..15360
                     /locus_tag="SB143_000204"
     CDS             15157..15360
                     /locus_tag="SB143_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748782.1"
                     /translation="MVFWAFLVIIGAIYFGNMLFGQYSLDTLLSLEATKEELNKKISF
                     LKEQNAKAQKDYFELQGLYPNEN"
     gene            15350..16012
                     /locus_tag="SB143_000205"
     CDS             15350..16012
                     /locus_tag="SB143_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMIN domain-containing protein"
                     /protein_id="HEF9748783.1"
                     /translation="MKTKILGIFLIFISLLNAEENPFKSEQNMSMIMPPDFQKEDIKF
                     NSNARVLKSVSFNYINLDGSEEVLNVDINKSIDWHDTYTLVRTKSPDPSKVFDVSVTI
                     PERNDSKKESNGTANIEIPLQVDKIYDFISYAVYKNKIKLNTSDELISDFSIGNPSKI
                     VVDFKSDLVNPTKNIRISNSLFKRIDFGSHKGYYRLVIYLDGNYNYNIQKDATGYMIN
                     LL"
     gene            16012..16851
                     /locus_tag="SB143_000206"
     CDS             16012..16851
                     /locus_tag="SB143_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEF9748784.1"
                     /translation="MRIFVFLWCVSFAFASDILLLSKISEQEIQNKNFNGYLMSEKLD
                     GVRGIWEAGKFKTRQDNPIYTPSYFTYNFPSFKLDGELWIARAKFDEVSALIRGDNLD
                     SSLWKSVTYNVFDVPNACEEFKLTSCTLSNRLKVLEQYLQQNPNPYIKIIKQIPIKDQ
                     EHLKEFYKDIVLNKGEGVVIRKDLVPYEKGRSKNAFKLKPYEDAECKVIGYTEGKGKF
                     QGKIGALLCQMPNDRVIRIGSGLKDKDRENPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRD"
     gene            16898..16975
                     /locus_tag="SB143_000207"
     tRNA            16898..16975
                     /locus_tag="SB143_000207"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:16933..16935,aa:Pro,seq:tgg)
     gene            17000..17076
                     /locus_tag="SB143_000208"
     tRNA            17000..17076
                     /locus_tag="SB143_000208"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17034..17036,aa:His,seq:gtg)
     gene            17081..17157
                     /locus_tag="SB143_000209"
     tRNA            17081..17157
                     /locus_tag="SB143_000209"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17115..17117,aa:Arg,seq:tcg)
     gene            17172..17248
                     /locus_tag="SB143_000210"
     tRNA            17172..17248
                     /locus_tag="SB143_000210"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17206..17208,aa:Arg,seq:tct)
     gene            17254..17338
                     /locus_tag="SB143_000211"
     tRNA            17254..17338
                     /locus_tag="SB143_000211"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17288..17290,aa:Leu,seq:tag)
     gene            17540..18295
                     /gene="proB"
                     /locus_tag="SB143_000212"
     CDS             17540..18295
                     /gene="proB"
                     /locus_tag="SB143_000212"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEF9748785.1"
                     /translation="MQRIVVKVGSHVISDENLLNLKRFENLVAFLTKLMQKYEVILVT
                     SAAISAGCTKLHIDRKNLINKQVLAAIGQPFLISVYNEFLAKFGKMGGQILLTGKDFD
                     SRKATKHAKNAIDAMIDLGILPIINENDATAIEEIVFGDNDSLSAYATHFFEADLLVI
                     LSDIDGFYDKNPSEFSDAKRLERVEFIKEEWLNVSVKTGSEHGTGGIVTKLKAAKFLL
                     ENHKKMFLASGFDLSVAKAFLLENKQIGGTLFE"
     gene            18562..19290
                     /locus_tag="SB143_000213"
     CDS             18562..19290
                     /locus_tag="SB143_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748786.1"
                     /translation="MSILVNAVDTFYSTKNEAVFSASKSENIKRNVADFNTDNNTKNS
                     VYFFSDDKEISLNLSNESMELLTNHFSVNDFLKLSNGNIGLSGKAAAFVEGWYKDIMI
                     NRNFLNADRDKNGRIENNEHLSLKNSVEDVAKNQDLSKNFGAVVLRMTQSTTGYVENT
                     ISDKSLSIEALIDESIKSDRNFDGIITRLEYSAKGGTDMQGYTNWAIDALNDILDDSD
                     KAKNSFSCRSYKQNLAFVCRQNIK"
     gene            19205..19504
                     /locus_tag="SB143_000214"
     CDS             19205..19504
                     /locus_tag="SB143_000214"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748787.1"
                     /translation="MIAIKPKIHLVVDPTSKIWHSYAGKTLNEVKAYYDNPFRATSGT
                     SASGFLNIVIEEPRILPSNDLENEKEQLLNEFPEFRALIQNNPNITKEKLLKLKN"
     gene            19739..20656
                     /locus_tag="SB143_000215"
     CDS             19739..20656
                     /locus_tag="SB143_000215"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEF9748788.1"
                     /translation="MKKIIFMGTPSYATCILKALLEDENFELLALFTQPDKAVGRKQI
                     LTPSDTKAFLLQKAPQIPIFTPNSLKDESVIEQICALKPDFIVVAAYGKILPKAILDI
                     APCINLHASLLPKYRGASPIQSAILNADEKSGVCTMLMEEGLDTGAVLESVECDIRDK
                     NVNEVFEILANLAAKLTLSTLLNYEKLLPKKQDESLATHCKKIKKEDGLVSLDNAREI
                     YQKYLAFTPWPGVFLENGLKFIELELVDELKQNAKMGEILELEKESFLLACKQGILRI
                     KKLQESGKKALDGRTYLNGKRLKSADSLC"
     gene            20619..21272
                     /locus_tag="SB143_000216"
     CDS             20619..21272
                     /locus_tag="SB143_000216"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEF9748789.1"
                     /translation="MEKGLKVQIACVESIDSTHLFLCEQIRSGKINENFALYALNQTK
                     GVGSRENSWQSSSGNLHLSFCIKEGDLPSDLPLVSVSIYFAYLLKEILQEKGSRIWLK
                     WPNDLYLDDKKVGGVISTKISDFIVGGMGLNLKFAPHDAALCDVEILLKDLIQEFLQR
                     LEKKFLWKHIFSKYMLEFEKSRQFSVHYEGKVFSLENAFLYEDGSILLGDKRVYSLR"
     gene            21269..22054
                     /locus_tag="SB143_000217"
     CDS             21269..22054
                     /locus_tag="SB143_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEF9748790.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMILKNQIQEVLDEYDFIIIDSPPALGSITINAFVASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINPKLKVRGFLPTMYSSQNNLSKDVVEDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSLAYQNLAYSILG"
     gene            22059..22895
                     /locus_tag="SB143_000218"
     CDS             22059..22895
                     /locus_tag="SB143_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEF9748791.1"
                     /translation="MGLNKNRGLSTLMGDVGEVYSRELGLDKNQVSLVEISKITPNPF
                     QPRKTFDEAALNELANSIKEHGLIQPIIVLKKNDSFILVAGERRLRATQILGKENILA
                     FVSDSDESKLRELALIENIQRENLNPIELANSYKDLIEVYNITQENLAELIHKSRTQI
                     TNTLRLLNLDPKTQDLIASGKISQGHAKVLVGLDKEDEKVLVDSILGQKLSVRDTERL
                     VQKVKNKENTEDVEFENSMQSLKQTLNKLGFASKNNKKELIIRLDNIEKIKKLTEILN
                     KF"
     gene            22954..23379
                     /locus_tag="SB143_000219"
     CDS             22954..23379
                     /locus_tag="SB143_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEF9748792.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNTMLYRPLLKFMDERNDSIK
                     NDENKVKENSQEMLGANDEVEAIHVSTREEIHKIKQNAINAAKEEAQQAIKAKKEELE
                     RKMANFYTELVSQKKELQDHLSAHLPDLKQALQNNIKQH"
     gene            23392..23904
                     /locus_tag="SB143_000220"
     CDS             23392..23904
                     /locus_tag="SB143_000220"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEF9748793.1"
                     /translation="MKKLFYFIFLLPLCAFGASNGSGEYDIVPRTINFLIFVAILYYF
                     VANPFKAFYKNRILRISLKLDEIQKKLLESKAKKLDTMKKLEEAKANAAAALVVAKKE
                     AEVLAQKIKEETQNELALLEKHFEEQKDYEFRKMEKEVVSLTLKEIFEDSNIALKQNE
                     IIDIMMKKVS"
     gene            23904..24425
                     /locus_tag="SB143_000221"
     CDS             23904..24425
                     /locus_tag="SB143_000221"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEF9748794.1"
                     /translation="MNDLIAKRYAKAIALRADISEFYDNLSVLSSAFASPKFKNIIES
                     NQIQKEKKLEFVISLIEKASPSFNNFLKLLAENSRLSCIPQIAKELERQKSFKENIFL
                     GTVYSKEVLSEDNIKELENRLSTKFGVKIKLQNKVGLNEGVKISLEELGYEISFSMKA
                     LQNKMSEYILKII"
     gene            24438..25943
                     /gene="atpA"
                     /locus_tag="SB143_000222"
     CDS             24438..25943
                     /gene="atpA"
                     /locus_tag="SB143_000222"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEF9748795.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFDNGDKGMALNLEESSVGIVILGKGEGLKEGTSVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINSNEFRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQKGQGVVCIYVAIGQKQSTVAQVVKRLEEHGAM
                     DYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGYLDDVAV
                     SKIREFEDGIYPFIEAKYPDLFEQIRSKKALDAELEEKLAKAINEFKANHL"
     gene            25953..26837
                     /locus_tag="SB143_000223"
     CDS             25953..26837
                     /locus_tag="SB143_000223"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEF9748796.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSRV
                     YAQKIDEILSEISFQVNKIVHNEEDSRFVLFHKKNQIKNVDLIFITADKGLCGGFNIK
                     TLKAVSELLKEYEEKNINVRLRAIGKTGIEYFNFQKIELLEKYLGLSSSPDYDKACSV
                     IQAAVDDYLNGITDEVVLVHNGYKNMITQELKISHLIPVEPKQIEGNSNSLLELEPED
                     TDLLGDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            26864..28261
                     /gene="atpD"
                     /locus_tag="SB143_000224"
     CDS             26864..28261
                     /gene="atpD"
                     /locus_tag="SB143_000224"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEF9748797.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKQKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPVFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRSIAEKGI
                     YPAVDPLDSTSRMLDPQIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     IVERARKIEKFLSQPFFVAEVFTGSPGKYISLEETIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            28265..28654
                     /locus_tag="SB143_000225"
     CDS             28265..28654
                     /locus_tag="SB143_000225"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEF9748798.1"
                     /translation="MDNLISFEIVTPMGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKISVLAKGAVWISGSSESEIEKNLESA
                     KELIKSMSSDNTALAATFSKLDNAKVR"
     gene            28655..29209
                     /locus_tag="SB143_000226"
     CDS             28655..29209
                     /locus_tag="SB143_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEF9748799.1"
                     /translation="MNFEAIFQFFGSSSIITYIVLAWLSLYFILSFFILFSRVTYLAA
                     WKNKEKESLEALLLGEKDLSRTRSILRKCTDTSLSHLEIYKNLASRRASNGLTWLSIV
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSNK"
     gene            29220..29609
                     /locus_tag="SB143_000227"
     CDS             29220..29609
                     /locus_tag="SB143_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEF9748800.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKSTSAPSVKSLIVSINAKKEIFLNQEKYSFVSFADNLAQKKVQFNTDEPVFIRADK
                     SLKYDDVIFVLKSIKNLGFNKVALQTE"
     gene            29613..30389
                     /locus_tag="SB143_000228"
     CDS             29613..30389
                     /locus_tag="SB143_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEF9748801.1"
                     /translation="MKEYGLGKINSFLLAVAVYVFIIILIFFRLVAHIQPAIQYTDIQ
                     DSFIDIELMEPSKKVVNEQSAPKDIQKPAQELDIEKLFAQTTNKAVKTEDVDQKASNF
                     NELFGSIKEIQEEKTTKIQSSAKSETTSSSKTQASELVKQLNDSLLEEESINQGESIK
                     NQKTGIYDEFLGKVVRTIAQRWRQYHPNSENISVKVKIFIDENGNFGYTSVEKSGNSL
                     YDAKVAEFLENQKGKFIAYPPQNKSISITMNLKDEAQIQK"
     gene            30403..31614
                     /gene="tolB"
                     /locus_tag="SB143_000229"
     CDS             30403..31614
                     /gene="tolB"
                     /locus_tag="SB143_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEF9748802.1"
                     /translation="MKKIVTVFLIFLGILWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     INLKRSFYNIIVNDLKVSSNFEVVSDASSEAANYTFEYDLSKNGNALNLHVKIKAGGL
                     EKSSQTYALNGVEQYPFLAHKSVKASVNALGLAPVEWMDHKILIARNSSSKKSQIIMA
                     DYTLTYQKVIIDGGLNLFPKWGNKEQSIFYYTAYDHDRPTLYRYDLRTNKASKILASG
                     GMVVASDVSLDGSKLLVTMAPKDQPDVYLYDLNSKNLTQLTNYSGIDVNGNFIGVDDS
                     KFVFVSDRLGYPNIFIQNLNNGSAEQAVFHGKNNSAVSTYKDFLVYSSREPNQVGVFN
                     IYLMSINSTGIRQFTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFP
                     LKVGKIQSIDW"
     gene            31691..32188
                     /gene="pal"
                     /locus_tag="SB143_000230"
     CDS             31691..32188
                     /gene="pal"
                     /locus_tag="SB143_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEF9748803.1"
                     /translation="MKKILFSSIAAFALVISGCSTKSTSVSGDTSVDSNRGTGGSDGW
                     DIDSKISQLNDTLGKVYFDFDKFNIRPDMQNVVNTNANIFNNEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAQGVNSDRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            32192..33145
                     /locus_tag="SB143_000231"
     CDS             32192..33145
                     /locus_tag="SB143_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEF9748804.1"
                     /translation="MKKIFSVALIGATLLYAESSAFGAGDLTSNSPYGLTSSEKLLKE
                     KLDTLSNNNVQANSRINEIEQRVEGLQSTLEGINSQYAKSNSRLTQLETRFEAMENNL
                     STELQNLKAYVEESRKIQDANNKQIKKILTELSSLVDSINANYVSKDDLNSTNLSIKN
                     TVVVPLSIDDKNITSSDENNASVAPVQEKEVKQIDDSWKKKKNNEILDLAIKDLNNNS
                     YENSKIKLNYLISKQYKPARANFWLGEIEYKQKKYNNAIAYYKKSSALSTKGDYFPKL
                     LYHTAISLDKIGDPKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            33161..33733
                     /locus_tag="SB143_000232"
     CDS             33161..33733
                     /locus_tag="SB143_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEF9748805.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYAQPISFILGKGQILE
                     ALEEEVMKLDCPSNADVVIKKDKGLGEYDENAVQVLPKEQFAGIDLKIGMELFGEGEN
                     GETVRVTVKEISDNDVTIDYNHPYAGRDLLFSLNIVDARAASEDELLTGIIAGSHSCG
                     CGSGHGHGHDHHGHGGGGCCGGGGGGCGCH"
     gene            33735..>34449
                     /locus_tag="SB143_000233"
     CDS             33735..>34449
                     /locus_tag="SB143_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEF9748806.1"
                     /translation="MNAVFIFPGQGSQSLGMGKDFYENSKTAKELLENASDFCKIDFK
                     NLLFNENDDLNKSEFTQPAILLNSLMAYSALSELKPDIKVKFALGHSLGEFSALAING
                     AFSFLEATMLVHKRGLFMQEDCAKVEAGMMVILGLDDKKVEELCQKARDEDKKIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASNKLCIELEK
                     ILEPTFKAVISNATAKAYTS"
BASE COUNT        12219 a         4812 c         6421 g        10997 t
ORIGIN      
        1 ccagctagcg aaggtacggg agttatcgcg ggtggttcta ctcgtcctat cgtagagctt
       61 gcgggtatta aagatatctt aactaagtct ttaggttcaa ataactcagc taacgtggtt
      121 cgtgctacaa tcaaagcttt aacaatgcta aaaggataag aagatgaatt tgacaaaagc
      181 agcgggatca acgcataaaa ccaaaagaat aggccgtggc caaggaagtg gaatgggtaa
      241 aaccgccact aaagggggca aaggtcaaac cgctagaaag ggttataatg aaaaaagagg
      301 ttttgaagga ggtcagcaac ctcttcaaag aagattacca aaagttggtt ttacttctaa
      361 aatcgcaaaa ccttatgtga ttaatgttga aaaaatcaca gccgtaaaag agcttaatga
      421 aattacaatt gaaagcatca aaagcgttca taaaatttca aagtctgtta ctaaaattaa
      481 attaatcggt gcaagtgcaa aagacttagc atcaaaaatt aaagacgaga atatcagcgt
      541 caccggatca aaataatgaa taaggcattg acgaataaga ttttaatcac cttagctttc
      601 ttgtttgctt atagggttct ggcttatgtg ccagttcctg gcgtcaatgc tgatgtgatt
      661 gcggaatttt ttaacaataa tcaaaacaat gctttgggtt tatttaatgt ttttagtggt
      721 ggggcagcag aacgcttttc tatcatttct ttaggtatta tgccttatat tactgcttcg
      781 attatcatgg agcttttagc agctactttc ccaaatatcg gtaaaatgaa aaaagaacgt
      841 gatggtatgc aaaaatatat gcaaattatc cgttatgcaa ctatagtaat cactttagtt
      901 caaagtatcg gtgtggctat aggacttcaa agtttacatg gaagaggtgg agcaggcgct
      961 ataatgatag aaaatttaaa tatgtttatt gcgctttgtg caatttctat gctcgcagga
     1021 actatgcttt tgatgtggat aggtgaacaa atcacacaaa gaggtatagg aaatggtatt
     1081 tctttgatta tttttgcagg tattgtttca ggaattccaa gagctatttc gggtacagta
     1141 ggacagataa attcaggcga aatgaatttc ttaaccgctt ttgttatcct tgctttgatt
     1201 ttaatcacta ttggcgtgat tatatatgta gagcttggag aaagaagaat tcctatttct
     1261 tactcgcgta aagtagtaat gcaaaatcaa aataagcgta ttatgaacta tattccaatt
     1321 aaaatcaatt taagtggagt tattccgccg atttttgcta gcgctatttt aatgtttcct
     1381 acgactattt tgcaaacaag tacaaatccg tatttgcaag ctatcaatga ctttttgaat
     1441 ccaaatggtt atttatttca tgttttgact ttcttgtttg tgattttctt tgcgtatttt
     1501 tatgcttcta tagtatttaa cgctaaggat atagcggaaa atcttaaaaa acaagggggt
     1561 tttatccctg gaattcgtcc aggcgaaggg acagcaaatt atcttaatga agtagcttct
     1621 cgtcttactt tatcgggttc tatttattta ggacttgtag caaccttgcc ttgggttttg
     1681 gttaaattca tgggtgtacc ttttaatttt ggaggtactt ctgtattgat tgtagttcaa
     1741 gttgcattgg atacaatgag aaaaattgaa gctcaaattt atatgaataa ataccaaacc
     1801 ttaaatgcaa taggtttata aacttttaac acaaggagga gatatctcct tgtgttttat
     1861 actttctata aaaagcgatt tttcatcttt gttttaaaaa taaaaataca atacaaacta
     1921 taaaatttaa aatagcccat attaaaaacg catcaacaag tcctaattgt cttactatag
     1981 gctgagagat aatcgggctt aagaattgcc ctaaaaatat acaactagct aaaattccat
     2041 aagctctagc tcgtgcattt tcaggacaga ttgaaaaaag ataagcagtg ttatttacaa
     2101 gcatgatacc tccacccatt ccaagcaagg ctaaagcaaa taaaacagcg ataaaatcat
     2161 cgatcaaaaa gagtatcaaa aaagaacagc ccacaatgaa taaagtagca atataaatca
     2221 ttttaatact taaaaaacgc atgatatatt tgtaacttag agaaaaaata ccataacaaa
     2281 gtgcagaaat tgacattgaa atccctataa atttaggatc taagcctaga tgctcttcta
     2341 tataataagg aagttgtgta ggggatatat aataaaccac catgataaaa aatcctataa
     2401 aataaatagg aaaaaatttc cagtaattag ttttttcttc tatctttgta tgattgtaaa
     2461 atttaaattt tcttggctca aaaagataaa tcatggctat gagggtgatt aaaattccaa
     2521 gcccataaac caaaaaagga tagcgccaag aataacttga aacaaagccc gctatagaga
     2581 taaacactgc accacctacc gcacaaaaaa agccttgaag acttaaggca ttttctctac
     2641 ggttaaagcc accacgacta taataatctc ccagcaaagc cgaagcaccc gtcattataa
     2701 aagccgttgc catcccaaaa atagctcttg aagtgagtat agcataaata tcatttaaga
     2761 aaaagccact tactccagca agtgtccaaa caatcattgc aggaaaaaca aattttaatt
     2821 tacccagttt atccattaaa attcctgcaa aaggagataa aatcataacg aaaatagcag
     2881 gtagggttaa tactaaacgc actaaaatat caagatgcgc tagggtaaaa tttgtttgca
     2941 tatttgcacc tgattggatt aaaatatctt caaaatgtct attgattgca ggcagtgctg
     3001 atgagattac cacgcttcct agcatagtca ttgccgccat ggaaaatact gcgattttaa
     3061 agcctgattt ttctgtgatc tcaaccattt ttttatctaa ttttgtatca ttggggtgaa
     3121 atttataaga ttttttcttc atatttgaac ctttttagtt ttattatact caaaaatttt
     3181 tcttttgtat ttaaaattac ttctatttgt aatttatact cctgtttttc atttgtatag
     3241 ataaaatatc tttcattata agtagaattt caaaaatttt tagctaaatt cagcttttaa
     3301 ttttttatag aaattattta tctttaatta ttaatagtat ttttaatgaa atttacaaag
     3361 gcagtagcaa atgaaaaaaa atttgatcat agtcgaatct cctgcaaaag caaaaactat
     3421 aggcaatttt ttgggcaaag aatatgaagt catagcttct aaagggcata taagagattt
     3481 acctaaatca agttttggta taaaaataga aaatgatgaa tttatccctg agtatagaat
     3541 cacaagcgat catagtgttt tagttaaaga acttaaggaa aaagcaaagg gagcaaaaga
     3601 gatttattta gcaaccgatg aggatagaga aggagaggct atagcctatc atattgcaaa
     3661 agctataggc aaagatgaaa atgtcttacc gcgtatcgtt tttcatgaga ttaccaaaaa
     3721 tgctatcgaa aatgctttaa aaaatcctag aaaacttgat atgaattctg ttaatgctca
     3781 gcaaactagg cgtttattag atcgtattgt aggatataaa ttaagtcctt tgctagggca
     3841 aaaaattcaa agaggcttaa gcgcgggccg tgttcaaagt gcggctttaa agattatcgt
     3901 tgatcgtgag aaagaaattc gtgcttttgt tcctttggaa tattttagta tagatatgat
     3961 atttcaaaag gatttaaatg cagaacttgt cgaatttgat aaagcaaaga tagaaaagct
     4021 taccattacc aacaaagatc gtgctaaact tatactagaa gcttgtaaaa atgaagttta
     4081 tagtataagt gacattgaaa gcaaagaaag aaaaattgct ccacctccac cttttatgac
     4141 ttcaacctta caacaaagcg caagcaatcg tttgggattt aaccctaaaa aaactatgat
     4201 gatagctcaa aaactttatg agggagtaaa tactcatgag ggtgtgatgg gggttattac
     4261 ttatatgaga accgatagtt taaatttagc caaagaagca gtagaaaatg caagaaaatt
     4321 catacaagca aattttggca aagactatct tccaaccaaa gcaaatgttt atactacaaa
     4381 agctaaaggc gctcaagaag ctcatgaagc tatacgccct actaatttaa attttactcc
     4441 agaaatcgca gctaaatttt tagataaaga cgagttaaag ctctatacgc ttatctataa
     4501 tcgtttttta gcttgtcaga tgaatcctgc tatctctcaa actcaaaatg tttttgtaaa
     4561 aaatgacaga gcagtgttta agataagtgg taggaaaatt ctttttgatg ggtattataa
     4621 agtttatggt gatatggata aggataaaat tttaccaaat tttaaaatag gtgaaaattt
     4681 aaaaatacaa aatttagaaa tgaactcaca ttttacagaa cctccttcaa gatattccga
     4741 agctggactt gtgaaaaaac ttgaaagctt aggcataggt cgcccttcaa cttatgcgcc
     4801 gactatttct atactcacaa gccgtgatta tgtaaaaatc gataaaaaac aactcattcc
     4861 tagtgaagtc gcttttagtg taactgaagt gcttgaaaag aatttcagtg atatagtaga
     4921 tagtaaattt acttcaaatc ttgaaaatac tttagatgag attgcagaag ataaagctaa
     4981 ttggcaagaa actttgaaag aattttatta tccctttatg aggaaggttg aagaaggaaa
     5041 aacaaaaatt gcaagccaaa aaacggtgac taaattgggt gaaaattgcc ctgattgtgg
     5101 tggtgaactt gcgattagaa aagggcgttt tggagaattt gtagcttgtt taaattttcc
     5161 aaaatgcaaa tactcaagaa atttaaaaaa tgaaagcaag aatgaagctg aagtaagtgt
     5221 tagcaaggct aaagcaaagg gcataggcat tacttgtcca agttgcaaag agggtgagat
     5281 agtagagcgc ctttcaaaac gcggtaaatt ttatggttgt agtgcttatc caaaatgtaa
     5341 ttttataagt aaatataaac caagcgatga aaaatgtgag gaatgtggag aaaatttagt
     5401 gataaaagag ctaaaaaaag gcacattctt agaatgttta aaatgcaaaa ttaaaaaaga
     5461 aataaaggat taatcatgca aatcatgctt tgtgctattt caaatatagc cagtggaaat
     5521 tgttctgaag attgcaaata ctgcacccaa agcgctcatg taaaaacaga tattcaaaaa
     5581 tatcgtcgta aagaactttc acaaatcgtt ttagaagcaa aaatggcaaa gaaaaatgaa
     5641 gccttgggtt tttgtttggt tacagcagga cttgggcttg atgatgaaaa gcttgagtat
     5701 gtttgtgagg ctgctaaggc tgtgcaaaaa gaagtgccta atttgctttt aattgcctgt
     5761 aatggtatgg caagcgtgga acaactcaaa gaacttaaaa aagcaggaat tttttcttat
     5821 aatcacaatc ttgaaacttc taaggaattt tttccacaaa tttgcaccac tcatacttgg
     5881 gaaagtagat ttcaaaccaa tttaaacgct aaagaagcag gacttatgct ttgttgtggt
     5941 ggaatttatg gtatgggtga gagtgaagaa gatagactaa gttttagaaa atctttgcaa
     6001 gaattacagc ctttttcaac gcctattaat ttttttatag ccaatgaaaa tttaaaacta
     6061 caagttccaa aattaagtgc tgatgaggct ttaaaaatta taagtgatac taaagaagct
     6121 ttgcctaata ctgtggttat ggtagcagga ggtcgtgagg tggtattgca agaaagacaa
     6181 tatgaaattt ttaaagcagg tgcaggtgct attgtaatag gagattatct tactacaaaa
     6241 ggtgaagaac caagtcgtga tatagtaaaa cttaaagaaa tgggatttac ttttgcatcc
     6301 gagtgtcatt gattcacagg gtttaattga tctacaaatt cttattgtta tagctttatg
     6361 tttactattt tctccacata tagctaaaat tttgcgctta ccgatttcag ctactgaaat
     6421 cattttgggc gcacttatgg cgtattttgg ttttataggt aagagtgaaa attttactat
     6481 tttagctaat gtgggttttt attatcttat gtttatagcg ggtatggaag tcaatttgcg
     6541 cgcttttttt aatatggata aagaaattgc caaaaaaagc tttttttata tcatattgct
     6601 ttattctttt tcatcggcta tagtatgggt ttttgaactt tctttcgtgt ttgttttgat
     6661 tattccggtt atgagcgtgg ggcttttatc cttgctttat aaggactttg gtaaagagtg
     6721 ttactggctt aatacagcta tgatagtagc aacattagct gaggttgttt ccatagtgct
     6781 tttaaccata gctggagctt ttttacgcga ggggacaaat attatcgatg tagtacaaag
     6841 cattttatat cttaatatat ttttagggct ttgtttgctt ggttttaaag ttttaggtgt
     6901 gcttttttgg tggtatcccc aacttaaagt cgtgctgatg ccttgggaag ataaaaatga
     6961 aaaagatata agattttgta tggcaatttt tattttgatt atcgtggcta tgattattac
     7021 aaagcttgaa atcgttttag gctcttttat tgcaggttct tttatcgcaa ctttttttga
     7081 ccataaaaag gatttagagc ataaactttc tagttttggg catggttttt taattccgat
     7141 tttttttatc catataggaa ctactttcga tcttaaaatg attttagaat atgaaatcgt
     7201 atttgatgct attttgctga tgtttgtgat ggtaggtttg agaattttgt gtgccagtgt
     7261 tttttggaaa aaaattggct ttcaaaatat ggttttattt ggactgagtc actctatgcc
     7321 tttgactctt cttatcgcta ctgctacgct aggatattca ggaaaagtta tcagcgaaga
     7381 actttattcg gcgctaattt taacagcttt atttgaagct attgttgtga tgagtgcgat
     7441 taaatttatt tcaaacatta aaaagtaatc taaataacac aggttacttt tttactcaaa
     7501 aaggttaatg aattttaaaa ttattgacaa tgaaaaagtt gaaaatcgcc ttttttagct
     7561 agaattacta aaagtaaaga ttaaaaaagg agcaaaaatg tcaaattctg ttactgtaac
     7621 tgacaataga aatggtaaaa gctacgaatt ccctatatat gatggtacta ctggtccaag
     7681 tgttgtggat atggggagtt tttataaaca aacaggaatg tttgcttatg atgaaggttt
     7741 aacttctaca gctacttgta aatcaaaaat tacttatatt gatggtgaag agggtgtttt
     7801 aatgcaccgt ggctatccta tagaatggct tgctgaaaat aaactttttt tagatgtagt
     7861 gcatctttta ctctataaag aacttccaag caatgaaaga cttgaagcat ttagatatga
     7921 gcttaaaaaa cgctcttata tacatgaggg tatgcatcgt ctttttgatt ctttccctga
     7981 taatgctcac cctatggccg ttttacaagg cgctgtttca tctcttagtg ctttttatcc
     8041 tgatcattta aatatgaatg ttagagaaga gtacatggaa atggctgcta gagttgtagc
     8101 aaaaattcct actatagtag ccgctgctta tcgttataaa aatggttttc ctatggctta
     8161 tcctaattta gatcgtggat ttactgagaa ctttttatat atgttaagaa cctatcctta
     8221 tgatcatgtt gagcttaaac ctatagaagt aaaagcactc gatactgtat ttatgcttca
     8281 tgcagatcat gaacaaaatg cttctacttc tactgttcgt gccgtaggtt ctactcatgc
     8341 gcatccttat gcatgtattt cagcaggtat tggagcgctt tggggtcatg ctcatggagg
     8401 tgcaaatgaa ggcgttatta gaatgcttga ggaaatagct actgttgata gggtggatga
     8461 atttataaaa agagcaaaag ataaaaatga cccattccgc ttgatgggct ttgggcatag
     8521 ggtttataaa aattttgatc cgcgtgcaaa agtacttaaa aagcttcgtg atcaattaat
     8581 cgatgagtta ggtattgata cgaatttgat taaggtggca actcgtatag aagagattgc
     8641 cttgcaagat gattattttg tacaaagaaa tctttatcca aatgtagatt ttcatagcgg
     8701 cttaatttta aaagctctag gaattccaaa tgaaatgttt gcaacgcttt tcgtgatcgg
     8761 acgtacacca ggctggatag cacaatggat agagcaaaaa gagcaagaaa cactaaaaat
     8821 tgttcgtcca agacagcttt accttggaga aaccagtaaa atttaaatga ttgtgtgaaa
     8881 ttaacttttt cacacaaact tcttatataa tttcaaaaga atattttgaa agtcttacaa
     8941 tgtttaaact cgataattta ctaaaaaccg ccatagatgc cagtaatgaa gcctctaaag
     9001 ctattttaaa agaaagaaaa aacctacaaa tttggcaaaa acaagatcaa agccccttaa
     9061 catcagccga tcttgcttca aatgaaattt taaacgatat tttaggaaaa acagatatta
     9121 aaattttatc tgaagaaggt ttgctaagtc aggaagaaag taaaaatttg caaagttatt
     9181 ggcttattga tccgcttgat ggtacaagtg ggtttttaaa aggtagtgat gaattttgca
     9241 ttatgatcag tttgattcat gaagatagac ctattttagc tcttataaaa aatccttcaa
     9301 aaggcgatat tttttacgct catcaaaata ctagagttta taaaaatgat aaaattttag
     9361 atataagcga acaagatttt atagacaatc aatctaaagc tcttttaagt gttaatcatc
     9421 ttagtaaaga ggatgaaaat tttgctaaaa aacacaattt gacacctatt aacataggat
     9481 cagggcttaa attttgtgct attttggaag gtagagcagg ggtttataag cgttttgaga
     9541 agttaaatag ttgggatatt gcagctggag attttttagt caatcaaaag ggtggtttta
     9601 tgggaacctt ttctaaggaa atgattttat attccccttt aaattataag tgcgagcctt
     9661 ttatttgtgt ttctaaaaaa agttttttaa atatatatac ataaaaacag catataattt
     9721 taaaatctta aaggataaaa atgaaaattt ttcttatttt atttatgagt attttgttaa
     9781 attctagtct ttttgcaaat aatttttcgc aaaaaaaaat cattaaacta gaacagcaag
     9841 aaagttttga aatcatagat cttcaacaaa atgttgaaaa acaaaactta gatcagcaaa
     9901 aagggatttt tgatagctct agtttgatga gtaagaaaga aagcattcgt aaagataatg
     9961 atgttgattt tgctatagct atgagtttta ggcaaaattt tggctatgct ttggatggtt
    10021 ttaacataag tgctaaagaa ttttctactc tttttgctaa aaatttagtg gataatttaa
    10081 gattaaattt tgtaaattca gctgcaaacg gtgtttatca agatttaaga actttagctc
    10141 gttttagtcc taaagactct aaattgctta atgtatctcc ttttttaaaa aaagaaaaag
    10201 acaaaagtca aatttatgcc aaatttacag actatcttgt ggtggtaaat ttagatgatt
    10261 tttatgtaaa tatcacaaat tattttgttg caataaccaa aaatgcagta gctaatatta
    10321 acttcaaagt tgtttctaca agtaatggta aaatactcac atcaaaaaat gtaagattaa
    10381 attttgcact tcatgcacaa gatcctaggg taaattatca agaacttgta aatcaaatgc
    10441 caaatatgct tgctgaagtt ataaacaaag agttagaaaa attaaattta acagtgcaat
    10501 aaaaatttaa tcgttgattt gcctaatgcg atcttgtagc tcttctatgc ttaaaaattc
    10561 ttgtcttaat tcctttgcga tttcatgcgc ggttatagga tcaagacttg ataaaattct
    10621 tttaagctcg taagtgattt gccatttagt catttcttct gggttgatat ttatttgcat
    10681 gaattatcct tttatcgtaa gaaaaaattg tctgattgta gcgtgaattt gattaaaaaa
    10741 tgctatcttt ttaaaaacat atattaaaga aagaagtaga aatttaattt aaatgataat
    10801 cacttcttct tctaatttta tgccaaattc ctcaaaaacc ttttttttgg caagttcgat
    10861 aagaaaaata gcatcatcaa aacttgcatt ttttttattg atcaaaaaat ttgcatgctt
    10921 gacgcttaac atcgcatctc ctttgctaaa gcctttaagt cctacagcct caatgagtct
    10981 tcctgcaaaa tctccttttg gatttttaaa gatagagcca aagcttgctc cgctaggttg
    11041 attgtttctt gcatttttta aattctcatc ttttatctta tcaaaaccaa aaccgagttt
    11101 aaattcagcc caaaaaaaag gcatatttaa agggcaaaag cggtaactaa aatcaatatt
    11161 ttcgcgtaaa atttcacctt ttgaagtggc aattttgact aaattctgac tgatgcactc
    11221 atctttaagc cccgcattca tttttaaaag tccaccaagc gtaccaggaa ttttgctaag
    11281 gtattcaaaa ccataaagat tattttcttt ggaaaaacga tacatttgac ttgcttttgt
    11341 cttacaacct atgcgaagat gtaaaaagtc tttattttgc tctaaaattt caataaaatt
    11401 aaaattatcg cttaaaattc ctatattttt aggcttaggg cttataagga gattgttcgc
    11461 accgcctatt aaaaagccat caaattcgcg aatttgttct aaaacttcga cctcaaattc
    11521 gcctccaatc tttacagatg aatatttctt aaaatcgata atcatttgat aaaagttgga
    11581 atttgattta aaatattttc ggtaaaatca atcattgtcg tagtcatcca aggcattaaa
    11641 aagatgatga ctattactac taagatgatt ttaggcacaa aagaaagcgt catttcatta
    11701 atctgtgttg tagcctgaaa gatactgata ataagccccg cgataagccc cgctaaaagc
    11761 atgggcaaag aaagcaaaag tgtgatttta aaggtttgca ctccaagagc aaccaaggtg
    11821 ctttcatcca ttttaatcct ttttaagaat ttctaaattc ttcatactcg ctcgggataa
    11881 gataatcctt agcatgtatg attttatcat aaaatttata atcatatccc agtttaaaaa
    11941 gcacatccac tgctttaaat tgcgtttcgc tcatgcaaat ggagttttta ttggcatata
    12001 aattcaaata agtatcaagt ttttcctcat taacgcggat taaatttctt tccattagca
    12061 taggggccaa aatgcggcga ttagaatttg ctatttttac agcatttgta agatctcttt
    12121 ctatcttgat agcatcgcta agcggcaaag agcgacgcaa agccattcca cccaaaggta
    12181 gaggtaaatt ttcttgtgca agttctagcc atatatccca aatttcagct tccacacaaa
    12241 gactactgtc aaattctaaa atgctttcat ggattaaaac ccctgcatcc acttcgccgc
    12301 ttaaaactgc attttcaatt tctaagaaat ttttataaat gattctagct tctggatatt
    12361 tcatacgaaa aattagagcg ttggtagtgt ttgcgccact taatgcaact ttaaaatttc
    12421 tttttaaatg tgtattttgt tttttgataa gttttggccc ataaccctca ccaaaactta
    12481 ctgcggtgcg caaaagagcg tattctttag caattaaagg ataaagtcca aacgagatcg
    12541 ctgtagcatc aaattcattt tttaaggcta aatcatttaa agtttgtata tctaaagccg
    12601 tatttttata gtcaaaatca ttccctatcc atcctagttt aattgccata tacataaaaa
    12661 tatcatccgc atcgggtgaa tgtgcgattg taattgtttt tttcatagct ttcctaattt
    12721 ttaatgaaat aatttttatt ctatcaaaat aaactattat ttaattttat tttgttaaaa
    12781 ttctagctaa aaatttgcaa tttttaagga aaataatgga cgataataag aaaaaatcgc
    12841 ttgatgccgc cttaaaatcg ctcgataaag cttttggcaa gggcactatt ttaaggcttg
    12901 gagataagga agtagagcag attgatagca taggaacagg ttctgtagga cttgatcttg
    12961 cacttggtat aggcggaatt ccaaaaggaa gaattattga aatttatggg cctgaaagtt
    13021 caggtaaaac aactttaact ttgcatatta tagcagagtg tcaaaaagcg ggtggggttt
    13081 gtgcctttat cgatgctgag catgctttgg atgtaaaata tgctaaaaat ttgggcgtag
    13141 atacagataa tctttatatt tctcaacccg attttggtga gcaggcttta gagatcgttg
    13201 aaaccatagc acgaagtggg gctatagatt tgatagttgt agatagcgtt gcagcactta
    13261 ctccaaaagc tgaaatcgaa ggcgatatgg gagatcagca tgtagggctt caagcaagac
    13321 ttatgtctca agcattaaga aagcttacag gaattgtcca taaaatgaat acaaccgtga
    13381 tttttatcaa ccaaattcgt atgaaaattg gcgctatggg ttatggaact cctgaaacaa
    13441 caacaggagg aaatgcactc aaattttatg cttcagtgcg tttagatgtt agaaaagtag
    13501 cgactttaaa acaaaatgaa gagcctattg gtaaccgtgt taaagttaaa gtagtaaaaa
    13561 ataaagtagc acctccattt agacaagctg aatttgatgt aatgtttgga gagggtttaa
    13621 gccgtgaggg tgaattgatc gattatggtg taaaacttga tatagtagat aaaagtggtg
    13681 cttggttttc ttataaagat aaaaaattgg gtcaaggtag agaaaattca aaagctttct
    13741 taaaagaaaa tccagaaata gctgatgaaa ttaccaaaga aattcaaaat tctatgggta
    13801 tagaaggcat gattagcagt agcgaagatg aagaaggaga agaataatgt tagtaattga
    13861 agatgttagg gcatatgaag tgcttgatag tagaggaaat ccaactgtaa aagcagaagt
    13921 tgtacttagt gatgggagta tgggtgcagc tatagttcca agtggtgcaa gtacaggttc
    13981 taaggaggct ttagaacttc gtgataatga tgaaagattt ggtggaaagg gtgttttaaa
    14041 agcagtttct aatgtaaatg aaactatagc tgatgaaatt ttaggacttg atgctttaaa
    14101 tcaagctcaa cttgatgata ctttgcgtga gcttgatggt acaaataatt actcaaaatt
    14161 aggcgcaaat gcgaccttgg gagtatctat ggcaacagcg cgtgcggcgg caaatgcttt
    14221 aggagtgcct ttgtatcgtt atttaggggg tgcaaatgcg agtattttgc ctgtgccaat
    14281 gtgcaacatc atcaatggtg gcgcccacgc aagcaataat atagactttc aagaatttat
    14341 gatcatgcct tttggtttta caagctttaa agaagctttg cgttcagttt gtgaaattta
    14401 tgcgatctta aaaaaagagc ttgcaaattt aggacattct acagctttgg gcgatgaagg
    14461 aggctttgct ccaaatttgg ctaacaatac agagcctatt gatcttttaa tgacttgtat
    14521 taaaaaagca ggttatgaaa atcgtgttaa aatcgctctt gatgtggcaa gtactgaatt
    14581 ttttaaagaa ggtaaatacc acatggaggg caaagctttt tcaagtgaag acttaattga
    14641 acgctatgtg gagctttgcg caaaatatcc aatttgcagc attgaagatg gtttagctga
    14701 aaatgatttt gagggctgga tcaagcttac tgaaaaatta ggcaataaaa ttcagcttgt
    14761 gggcgatgat ttatttgtaa caaatgaaga tatcttaaga gaaggcatta tcaaaaaaat
    14821 ggcaaatgct gtgcttatta aaccaaatca aatcggaact attactcaaa ctatgagaac
    14881 tgttcgttta gcacaaagaa acaattataa gtgtgtgatg agccatagaa gtggcgagag
    14941 tgaagatgtt ttcatagcag attttgctgt agctttaaat acaggacaaa tcaaaacagg
    15001 ggctttggca agaggcgaaa gaactgcaaa atacaatcgc ttgcttgaaa ttgagcttga
    15061 aagtgatgaa tatttaggag aaaaactctg agtgatttac tcaaagaata tgacgaaagc
    15121 accaagaaaa agagctttta tgcccatctt ataaagatgg ttttttgggc ttttcttgtc
    15181 attataggag ctatttattt tggaaatatg ctttttgggc agtattcttt agataccttg
    15241 ctttcacttg aagcaaccaa agaagaattg aataaaaaaa tatcttttct caaagagcaa
    15301 aacgccaaag cacaaaaaga ttattttgaa ttacaaggat tataccccaa tgaaaactaa
    15361 aattttagga atatttttaa tttttatttc tttattaaat gctgaggaaa atcctttcaa
    15421 atcagagcaa aacatgagta tgattatgcc acctgatttt caaaaagagg atattaaatt
    15481 taattctaat gcaagagttt taaaaagcgt aagttttaat tatattaatc ttgatggaag
    15541 tgaagaagta ttaaatgttg atattaataa aagcatagat tggcacgata cttatactct
    15601 tgtgcgtact aagagcccag atccttcaaa agtttttgat gtttcagtaa ccatacctga
    15661 acgtaatgat tctaaaaaag aatccaatgg tacagcaaat atagaaatac cgctacaagt
    15721 tgataaaatt tatgatttta tatcttatgc agtgtataaa aataaaatca aactcaatac
    15781 tagtgatgag cttattagtg atttttccat aggtaatcct agtaaaattg tagtggattt
    15841 taaatcagat ctagtaaatc ctactaaaaa catacgcatt agtaattctc tttttaagcg
    15901 tatagatttt ggctctcata aggggtatta tagacttgtg atatatttgg atggaaatta
    15961 taattacaat atccaaaaag atgctacagg atatatgatc aatctattgt gatgagaatt
    16021 tttgtttttt tatggtgtgt tagttttgct tttgctagcg atattttact tttaagcaag
    16081 ataagtgaac aagaaattca aaataagaat tttaatggct atttaatgag tgaaaagctt
    16141 gatggagtca gaggaatttg ggaagcggga aaatttaaaa cccgccaaga taatccaatt
    16201 tatactcctt cttattttac ttataatttt cctagcttta agcttgatgg ggagctttgg
    16261 atagctaggg ctaaatttga cgaggtgtca gctttaattc gtggcgataa tctagactca
    16321 agcctttgga aaagtgttac ttataatgtt tttgatgtac ccaatgcttg tgaagaattt
    16381 aaactcactt cttgtacttt aagcaaccgc cttaaggttt tagagcagta tttgcaacaa
    16441 aatcccaatc cttatataaa aatcataaag caaattccta taaaagatca agagcattta
    16501 aaagaatttt ataaagatat tgtcttaaat aagggcgaag gtgtagttat acgcaaggat
    16561 cttgttcctt atgaaaaagg cagaagtaaa aacgctttta aattaaaacc ttatgaagat
    16621 gctgaatgta aagtcatagg ttatactgaa ggtaagggta aattccaagg taaaatcggc
    16681 gctttactct gtcaaatgcc aaatgatagg gtgattagaa taggcagtgg tttaaaagat
    16741 aaagataggg aaaatccacc taaaataggc tctattgtta cttataaatt taatgggttg
    16801 actaaaaatt ccttaccgcg ttttccagtt tttttacgca taagggatta aaattcttga
    16861 ctttgttttc tttttctgat ataataccta cttttttcgg ggtgtagcgc agtctggtta
    16921 gcgcacttgg tttgggacca aggggccgaa ggttcgaatc ctttcacccc gaccattttt
    16981 tataaattta tacaaaatgg tgagtgtagc tcagtcggtt agagcatcag attgtggtcc
    17041 tgagggtcgt gggttcaatt cccatcactc accccactaa gcgttcgtag ctcaactgga
    17101 tagagcaaca gacttcggat ctgtaggtta tgggttcaat tcctatcggg cgcaccacca
    17161 aatttttata tgcgttcata gctcagctgg atagagcaac ggccttctaa gccgtaggtc
    17221 agaggttcga atcctcttga gcgtaccata ctagcggatg tggtgaaatt ggcagacacg
    17281 ccagacttag gatctggtgc agcaatgcgt gaaggttcaa gtcctttcat ccgcaccaca
    17341 atttaaaatt atatctccct taaattagcg caatcgtctt tttctttaca aaataaaaaa
    17401 tttcattttg ttttaaattt tatttcgatt tttagaaaat taatcatttt tattaaaaaa
    17461 tttgataaaa ttttttaagt ttataaaatg aatttttaat ttaaaaattt caataccata
    17521 taaaattaaa gagaaaagta tgcaaagaat agttgtaaaa gtaggctctc atgtgatcag
    17581 cgatgagaat cttttaaatt taaagcgctt tgagaatttg gtggcttttt tgaccaaatt
    17641 aatgcaaaaa tatgaagtta ttttagttac ttcagctgct atttcagcag gatgtaccaa
    17701 gcttcatata gatagaaaaa atttaattaa taaacaagtt ttagctgcga taggacaacc
    17761 ttttttaatc agcgtttata atgaattttt agccaaattt ggcaaaatgg gtggacaaat
    17821 tttgcttaca ggaaaagatt ttgattcaag aaaggcgact aagcatgcta aaaatgctat
    17881 tgatgcgatg attgatttag gaattttgcc tattattaat gaaaatgatg ccacagctat
    17941 tgaagagatt gtttttggtg ataatgatag tttaagtgcc tatgcgacgc atttttttga
    18001 agctgatttg cttgtgattt taagtgatat tgacggtttt tatgataaaa atcctagtga
    18061 atttagcgat gcaaagcgtt tggaaagggt tgaatttatc aaagaagaat ggcttaatgt
    18121 gagtgttaaa acaggaagcg agcacggaac aggcggtata gttactaagc taaaagcagc
    18181 taaattttta ttagaaaatc ataaaaaaat gtttttagca agtggttttg atttaagtgt
    18241 tgcaaaggca tttttgctag aaaataaaca aataggcgga actttatttg agtgattata
    18301 aatttttatt tttccttaag ttttgaagag taaaataaat tatgcgcata attcataata
    18361 ttaagaagaa atgatgaaaa agtcagtaaa aatacttctt tcagttgcta cttttgcata
    18421 cgatccttat acttgctctt tgcaaaattt aattaatcca ggtagctgca atcctaattt
    18481 agtgcctaat gatgagtatg cttgctaggc tttacctaat gttagagtaa atggcgagcc
    18541 tgtttgtgtg gagtattatt aatgtctatt ttagtaaatg ctgtagatac tttttattct
    18601 actaaaaatg aagctgtatt ttcagcttct aaaagtgaaa atataaaaag aaatgtcgca
    18661 gattttaata ctgataataa tacaaaaaat tccgtgtatt tttttagtga tgataaagaa
    18721 atttctttga atttaagcaa tgaaagcatg gaacttttga caaatcattt tagcgtaaat
    18781 gattttttaa aactttctaa tggaaatata ggcttaagcg gaaaagcagc cgcttttgta
    18841 gaaggctggt ataaagatat tatgataaat agaaattttt taaatgccga tagggataaa
    18901 aatggcagaa tagaaaataa cgagcattta tctttaaaaa attcagtaga agatgtcgca
    18961 aaaaatcaag atttaagtaa gaattttggg gcagttgttt taagaatgac tcaaagtaca
    19021 acaggctatg ttgaaaatac aattagcgat aaaagcttaa gtatagaagc acttatagat
    19081 gaaagtataa aaagtgatag aaattttgat gggattatta cgaggcttga gtattctgct
    19141 aaaggcggta cagatatgca aggctatacg aattgggcta tagatgcttt aaatgatatt
    19201 ttagatgata gcgataaagc caaaaattca tttagttgtc gatcctacaa gcaaaatttg
    19261 gcattcgtat gcaggcaaaa cattaaatga ggttaaggct tactatgata atccttttag
    19321 agcgacgagt ggaacttctg cttctggttt tttaaatata gtgattgaag aaccaagaat
    19381 tttaccaagt aatgatttag aaaatgaaaa agagcaattg cttaatgaat ttcctgaatt
    19441 tagagctttg atacaaaaca atcccaatat tacaaaagaa aaacttttaa aacttaaaaa
    19501 ttagcaaaga atcacacaca attaccaaga tcatcaaaaa caagatttgc aaaaagaatt
    19561 tacacaaaat ttctttaaaa cagatcttaa ggcctaaatt cccttaaaaa attcggcaat
    19621 ttccgcattt aaccttacaa aatttttata aagatgcacc ccgttttgac tggattgagt
    19681 tagctttaaa atcaaatttg ttataatcaa aaccttgaat tttatataaa gcgaaatgat
    19741 gaaaaaaatt atttttatgg gcacaccaag ctatgcaact tgtattttaa aagctctttt
    19801 agaagatgaa aattttgagc ttttagcgct ttttactcag cctgataaag ctgtgggtag
    19861 aaagcagatt ttaacaccaa gtgatactaa agcatttttg cttcaaaaag ctccacaaat
    19921 tcctattttt accccaaatt ctttaaagga tgagagcgtt atagagcaaa tttgtgcttt
    19981 aaagcctgat tttatagtag ttgctgctta tggaaaaatt ttacctaagg ctattttaga
    20041 tatagctcct tgtatcaatc tacacgcttc gcttttgcct aaataccgag gcgctagtcc
    20101 aatacaaagc gcgattttaa atgctgatga aaaaagcggg gtttgcacga tgcttatgga
    20161 agaaggacta gatacaggag ctgtgcttga gagcgtagaa tgcgatataa gagataaaaa
    20221 tgtaaatgaa gtttttgaaa ttttagcaaa tttagcagca aagcttactc tttctactct
    20281 tttaaattat gaaaaactcc ttccaaaaaa acaagatgaa agcttagcta cacattgtaa
    20341 aaagatcaaa aaagaagatg ggcttgtgag tttagataat gcaagagaaa tttatcaaaa
    20401 atatctagct tttacacctt ggcccggggt ttttttagaa aatggtttga aatttataga
    20461 acttgagctt gtggatgagt tgaagcaaaa tgccaaaatg ggcgaaattt tagaacttga
    20521 aaaggaaagc tttttacttg cttgcaaaca aggaatttta cgcattaaaa aacttcaaga
    20581 aagtggaaaa aaagctcttg atggcagaac ttatttaaat ggaaaaaggc ttaaaagtgc
    20641 agatagcttg tgttgaaagt attgattcta cccatctttt tttatgcgag caaattcgca
    20701 gtggcaaaat caatgaaaat tttgcccttt atgccttaaa tcagacaaag ggtgtgggta
    20761 gtagagaaaa ttcatggcaa agttctagcg gaaatttaca tctttctttt tgcattaaag
    20821 aaggcgattt gccaagcgat ttgcccttag tttctgtgag tatttatttt gcttatttgt
    20881 taaaggaaat tttacaagaa aaaggttcta gaatttggct taaatggccc aatgatttat
    20941 atttagatga taaaaaagtg ggaggggtaa taagcactaa aatttcagat tttatagtgg
    21001 gcggcatggg tttaaattta aaatttgctc cccatgatgc agctttgtgt gatgttgaaa
    21061 ttttgcttaa agatttgata caagagtttt tacaaagact agagaaaaaa tttttatgga
    21121 agcatatttt tagcaagtat atgttagaat ttgaaaaatc aagacaattt agtgtccatt
    21181 atgaaggtaa ggtattttca cttgaaaatg cttttttata tgaggatgga tcaattttac
    21241 taggcgataa aagggtgtat agtttaagat gagtgagatt attactatag caaatcaaaa
    21301 aggtggagta ggtaaaacta caacagctgt gaatttagcg gcatctttgg cggtggctga
    21361 aaaaaaagtt cttttaattg atgtggatcc acaagcaaat gctacaacag gcttgggttt
    21421 taatcgcaat aattatgaat ataatattta tcatgttttt ataggtagaa aaaaactttc
    21481 tgatattatt ttaaaaacag aattacccca acttcatcta gctccttcaa atataggtct
    21541 tgtaggcata gagcaagaac ttgcaaaagg cgaaaataac gaaaaaaaaa tgatactcaa
    21601 aaaccaaatt caagaagtac ttgatgagta tgattttatt atcatcgatt ctccgcccgc
    21661 acttggaagt atcactatca atgcttttgt tgctagcgat agtgttatca tacctataca
    21721 atgcgagttt tatgcgcttg aaggtgtggc aatggtttta aatacgatta aaattattaa
    21781 aaaaactatc aaccccaaat taaaagtgcg aggattttta ccgactatgt atagctcgca
    21841 aaataatctt tctaaagatg ttgtagagga tttaaagcaa aattttaaaa agcaactttt
    21901 taccataaat ggcaatgaag atgattttat tgttatccct cgtaatgtaa aactagctga
    21961 aagcccaagc tttggaaagc ctatcatact ttatgatatc aaatctcctg gttctttggc
    22021 ttatcaaaat ttagcatatt cgattttagg ataaaacaat gggtcttaat aaaaatagag
    22081 gtttgagcac cttaatgggg gatgtaggag aagtttatag tagagaacta ggtcttgata
    22141 aaaaccaagt gagtcttgta gaaatttcaa aaattactcc aaatcctttt cagccaagaa
    22201 aaacttttga tgaagcagct ttaaatgaac ttgcaaattc tataaaagag catggattaa
    22261 tacaacctat aatcgtactt aaaaaaaatg atagttttat cttagtagcc ggtgaaagaa
    22321 ggcttagagc tactcaaatt ttaggcaaag aaaatatact ggcctttgtg tcagacagcg
    22381 atgagagcaa gcttagagaa ttagcactca tagaaaatat acaaagagag aatttaaatc
    22441 ctatcgaact tgcaaattct tacaaagact taatagaggt ttataatatc actcaagaaa
    22501 atttagccga acttatccat aaaagcagaa cccaaatcac aaatacttta agacttttaa
    22561 atttagatcc taaaactcaa gatctcatag caagtggtaa aatttcacaa ggacacgcta
    22621 aggttttagt aggcttagat aaagaagatg aaaaagtact tgtagacagt attttggggc
    22681 aaaaactcag cgtaagagac acggaaagac ttgttcaaaa ggttaagaat aaagaaaaca
    22741 cagaagatgt agaatttgaa aattctatgc aaagtttaaa acagacttta aataaattag
    22801 gatttgcatc taaaaacaat aaaaaggaac tcattattcg tttggacaat attgaaaaaa
    22861 ttaaaaaact gactgaaatt ctcaataaat tttaacaaag tattagtttt tatttgttac
    22921 aataaaagac ttataatacc ccaaaggaga tctatgtttg aagatatgca tccttccata
    22981 atgcttgcta ctatggctat ttttttagct atgatagtga ttttaaacac tatgctatac
    23041 aggccccttt tgaaatttat ggatgaaaga aatgattcta taaaaaacga cgaaaacaaa
    23101 gtcaaagaaa attcacaaga aatgttagga gcaaacgacg aggttgaggc aattcatgtg
    23161 agtacaagag aagaaatcca taaaatcaaa caaaatgcca tcaatgcagc caaagaggaa
    23221 gctcaacaag ctataaaagc taaaaaggaa gagttagagc gtaaaatggc taacttctat
    23281 actgaattag tatctcaaaa aaaagaactt caagatcatt tgtcagcaca cttgcctgac
    23341 cttaaacaag ctttgcaaaa taatattaaa cagcactaat taaggagaaa gatgaaaaag
    23401 ctattttact ttattttttt actgccttta tgtgcctttg gtgcatctaa tggtagcgga
    23461 gagtatgata ttgttccaag aacaataaat ttcttaattt ttgtagctat attgtattat
    23521 tttgtagcaa atccttttaa agctttttat aaaaacagaa ttttaagaat ttctttaaaa
    23581 ttagacgaaa ttcaaaagaa gcttttggaa agcaaggcaa aaaaacttga cacaatgaaa
    23641 aagcttgaag aagctaaagc aaatgcagca gcagctttag ttgtggcaaa aaaagaagca
    23701 gaggtgcttg ctcaaaaaat taaagaagaa actcaaaatg agcttgcttt acttgagaag
    23761 cattttgaag agcaaaaaga ctatgaattt agaaaaatgg aaaaagaggt tgtgtcttta
    23821 actcttaaag agatttttga agattcaaat attgctttaa aacagaatga aatcattgat
    23881 attatgatga agaaggtgtc ttaatgaatg atctaatagc taaaagatac gcaaaagcta
    23941 tagccttaag agcagatatt tcagaatttt atgataattt gtctgtttta agttcggctt
    24001 ttgcttcgcc taaatttaaa aatatcatag aatcaaatca aattcaaaaa gaaaaaaaat
    24061 tagaatttgt tatttcttta atagaaaaag ctagtcctag ttttaacaac tttttaaaac
    24121 tattagcaga aaattcaaga ctttcttgca ttcctcaaat tgctaaagag cttgaaagac
    24181 aaaaatcttt taaagaaaat atttttttag ggaccgttta ttctaaagaa gtattaagcg
    24241 aagataatat caaagagctt gaaaatagac ttagtactaa gtttggtgtt aaaattaaac
    24301 tacaaaataa agtaggttta aatgaaggtg tgaaaatttc actagaagaa ttaggttatg
    24361 aaatttcttt ttcaatgaaa gctcttcaaa acaagatgag cgaatatata ctcaaaatta
    24421 tttaaggaga atgtgtaatg aaatttaaag ctgatgaaat cagttctatc ataaaagaaa
    24481 gaatcgaaaa ttttgattta aatttagaga ttgaagaaac aggaaaaatt atttcagtag
    24541 ctgatggtgt ggctaaggtt tatggtctta aaaatattat ggccggtgaa atggtagaat
    24601 ttgacaatgg cgataaaggt atggcattaa accttgaaga aagtagcgtg ggtatagtta
    24661 tacttggaaa aggagaaggc ttaaaagaag gtacttctgt aaaacgcctt aaaaaacttc
    24721 ttaaagttcc agtaggggaa gctcttatcg gtcgtgtggt gaatgcactt ggtgaaccaa
    24781 ttgacgctaa aggtgttatc aatagtaatg aatttagatt tgtagaagaa aaagctaaag
    24841 gtatcatggc tagaaaaagt gtacatgaac ctttacatac agggattaaa gctatagatg
    24901 cattggtgcc aattggtcgt ggccaaagag agctcatcat aggcgataga caaacaggta
    24961 aaactactgt agctgtagat actatcattt ctcaaaaagg acaaggagtt gtttgtattt
    25021 atgtagccat aggacaaaag caaagcacag tggctcaagt tgtaaaaaga cttgaagagc
    25081 atggagctat ggattatact atagttgtaa atgcgggtgc ttcggatcca gcagcacttc
    25141 aatacctagc accttataca ggtgtaacta tgggtgagtt ttttagagat aatgcaaaac
    25201 acgctttaat tgtttatgat gatttgagta agcatgctgt ggcttatcgt gaaatgtctt
    25261 tgattttacg ccgtcctcca ggtcgcgagg cttatcctgg tgatgttttc tatcttcact
    25321 caagactttt agaaagagct agtaaattaa atgatgagtt aggtgcgggt tctttaacag
    25381 ctttaccaat catcgaaact caagcgggcg atgtttcagc ttatattcca accaatgtta
    25441 tttcgatcac tgatggacaa attttcttag aaactgattt atttaactca ggaattcgtc
    25501 cagctatcaa tgtgggtcta tcggtttctc gtgtgggtgg tgcggctcaa attaaagcaa
    25561 ctaaacaagt ttcaggaact ctaagacttg atcttgcaca atatagagaa ctccaagctt
    25621 ttgctcaatt tgcaagtgat ttggatgagg caagtagaaa acaacttgaa cgcggacaaa
    25681 gaatggttga gttattaaaa caacctcctt attctccact tagtgttgaa aaacaagtgg
    25741 ttttaatttt tgcgggaaca aaaggttatt tggatgatgt agctgtttca aaaatcagag
    25801 aatttgaaga tggaatttat ccatttatag aagcaaaata tccagatctt tttgagcaaa
    25861 ttcgttcgaa aaaagcttta gatgcagagt tagaagagaa attagctaaa gcaataaacg
    25921 agtttaaagc aaaccattta taaggttctt ttatgtctaa tttaaaagaa attaaaagaa
    25981 aaataaaaag cgtccataat acgcaaaaaa caaccaatgc gatgaagctt gtttctactg
    26041 ccaaattaaa aaaggcagaa gaagcagcaa aaagatctag agtttatgcg caaaaaatcg
    26101 atgagatttt aagtgaaatt tcttttcaag tcaataagat tgttcacaat gaagaggatt
    26161 caagatttgt tttatttcat aagaaaaatc aaatcaaaaa tgtagatctg atctttataa
    26221 cagcagataa aggactttgt ggcggtttta atatcaaaac cctaaaggct gtaagtgaac
    26281 ttttaaaaga atatgaagaa aaaaatatca atgttcgctt aagagctatt ggaaaaacag
    26341 gaattgagta ttttaatttt caaaaaatag agcttttaga aaaatatctt ggcttgagct
    26401 caagtcctga ttatgataaa gcttgctctg ttattcaagc tgctgtagat gattatttaa
    26461 atggaataac tgatgaagtt gttctagtgc ataatggata taaaaatatg atcacacaag
    26521 aattaaaaat ttctcatcta atcccagtag agccaaagca aatcgaagga aactcgaatt
    26581 cgcttttaga acttgaacct gaagatacag atctcttggg agatttgatg aaaacatatt
    26641 ttgaatacaa tatgtattat gcattaattg attctttggc tgcagaacat agtgcgagaa
    26701 tgcaggctat ggataatgcc accaataatg caaaagctag ggttaaacag cttaatttag
    26761 cttacaataa agcaagacaa gaatctatca ctactgaact tattgaaatt atcagtggtg
    26821 ttgagtcaat gaaatagtaa aatttttaag gagagtataa ataatgcaag gatttatttc
    26881 acaagtatta ggtccagttg ttgatgtaga ttttaacgac tatttgcctc aaattaatga
    26941 agccattgtt gtaaattttg aaagtgaagg caaaaaacaa aaacttgttt tagaagtagc
    27001 agcacacttg ggcgataata gagttagaac tattgctatg gatatgacag atggcttggt
    27061 aagaggactt aaagcagaag ctttgggtgc tcctattagc gttcctgtgg gtgaaaaagt
    27121 tttaggaaga atttttaatg ttacgggaga tttgatcgat gaaggtgaag aaatttcttt
    27181 tgataaaaaa tgggcaattc atagagatcc accagttttt gaagatcaaa gcacaaaaag
    27241 tgagattttt gaaacaggga ttaaagttgt ggatttactt gctccttatg caaaaggtgg
    27301 taaagtaggt ctttttggtg gtgcaggtgt tggtaaaact gttattatta tggagcttat
    27361 tcacaatgtt gcatttaaac atagcggcta ttctgtattt gcaggtgtag gtgagagaac
    27421 tcgtgaagga aatgaccttt ataatgaaat gaaagaaagt aatgttttag acaaagttgc
    27481 tctatgttat ggacaaatga atgaaccacc aggggcaaga aatcgtattg ctttaacagg
    27541 tttaacaatg gctgagtatt ttagagatga aatgggtctt gatgtgctta tgtttattga
    27601 taatatcttt agattttcac aatcaggttc tgaaatgtca gcacttttag gaagaattcc
    27661 atcagctgtg ggttatcaac caaccctagc aagtgaaatg ggtaaattcc aagaaagaat
    27721 tacttcaact aaaaaaggat caattacttc agttcaagca gtttatgttc cagcagatga
    27781 cttaacagac ccagctccag caactgtttt tgctcactta gatgctacaa ctgttttaaa
    27841 tagatctatt gctgaaaaag gtatttatcc tgcggttgat ccacttgact caacttcaag
    27901 aatgcttgat cctcaaatta ttggcgaaga gcactataaa gttgcgcgtg gtgttcaatc
    27961 tgtacttcaa aaatataaag atttgcaaga tatcattgca attttgggta tggatgaatt
    28021 aagcgaagaa gataaattga tcgttgaaag agcaagaaaa attgaaaaat tcttatcaca
    28081 accattcttc gttgcagaag tatttacggg tagccctgga aaatatattt ctcttgagga
    28141 aaccattgca ggctttaagg gaattttaga aggtaaatac gatcacttac cagaaaatgc
    28201 tttctatatg gtgggtaata ttgacgaagc tattgcaaaa gcagataaac tgaaaggtta
    28261 atttatggac aatttaatca gttttgaaat agttacacct atgggtgtga tttatcaagg
    28321 ggaggtaaaa tcagttacct tgccaggaag tgaaggagaa tttggagtac ttaaaggaca
    28381 tgctgcttta gtttcatctt taaaatctgg tgtaattgat atagaaaaag ctgatttaaa
    28441 tcatgaatta atcgcaattg atgcaggtca tgctaaggta gatgaagata agatcagtgt
    28501 tttggctaag ggcgcggttt ggatttcagg ttctagcgaa agcgaaatcg aaaaaaatct
    28561 tgaaagcgct aaagaattaa tcaaatctat gagttcagac aatacagctt tagctgctac
    28621 cttttcaaag cttgacaatg caaaggttag gtagatgaat tttgaagcga tatttcagtt
    28681 ttttggaagt tcaagcataa ttacttatat agtcttagct tggctttcct tatattttat
    28741 actttctttt tttatacttt tttcaagagt gacttatttg gcagcttgga aaaataaaga
    28801 aaaagaaagt ttagaagctc tactcttggg agaaaaagat ttgagtagaa cgcgttctat
    28861 tttaagaaag tgcacagata ctagtttatc acatcttgag atttacaaaa atttagcaag
    28921 tcgtcgcgca tccaatgggc ttacttggct tagtatagta gcttcaacct ctccatttat
    28981 aggacttttt gggactgtta tttctatact tgagactttt ggtggtttag ggacgcaaaa
    29041 ttctttaagt attattgcac ctaagatcag tgaagcttta gttgccacag gctgtggtat
    29101 tttggttgct attcctgctt atacttttca tcttattatt aaaagaaagg cttttgagct
    29161 cttaagtata attgatagtg agattaaagt tattagttct aacaaatagg atttaagata
    29221 tgccatttga cgatgagaag ccagagctta atataactcc tttggttgat atcatgcttg
    29281 ttttattggc tattttaatg gtaacagctc caagcattac ttatgaagaa aaaatcaatc
    29341 ttcctcaagg aagtcaaaaa tccacaagtg ctcctagtgt taaaagctta attgttagta
    29401 ttaatgctaa aaaagagata tttttaaatc aagaaaaata tagttttgta agctttgcag
    29461 ataatcttgc gcaaaaaaaa gtacaattta ataccgacga accggtattt attagggctg
    29521 ataagagttt aaaatacgat gatgttattt ttgttttaaa aagtattaaa aatttgggct
    29581 ttaataaagt cgccttgcaa acagaataag ctatgaaaga atatggtcta ggcaagataa
    29641 attcattttt gcttgctgtc gcggtttatg tttttattat aattcttatt ttttttagac
    29701 tcgtagccca catacaacct gcaatccaat atacggatat tcaagatagt tttatcgaca
    29761 tagagcttat ggaaccctca aaaaaagtcg taaatgagca aagcgctcct aaagatattc
    29821 aaaaacctgc ccaagagctt gatattgaaa aactttttgc acaaactaca aacaaagcag
    29881 taaaaactga agatgtggat caaaaagcca gcaattttaa tgagcttttt ggtagtatca
    29941 aagagataca agaggaaaaa actactaaaa tacaatcaag cgctaaatca gaaacaacaa
    30001 gcagttcaaa aactcaagct tcagagcttg taaagcaatt aaacgatagc ttacttgaag
    30061 aagaaagtat caatcaaggc gaaagtatta aaaatcaaaa gacagggatt tatgatgagt
    30121 ttttgggaaa ggtggtgcgc accatcgccc aaagatggag acaatatcat cctaatagtg
    30181 aaaatatttc agtcaaggta aaaattttta ttgatgaaaa tggaaatttt ggctatactt
    30241 cagtcgaaaa aagcggaaat tctttatacg acgcaaaagt agccgaattt ttagaaaacc
    30301 aaaaaggtaa atttatagcc tatccacctc aaaataaaag cataagtatt actatgaatt
    30361 taaaagatga ggcgcaaatt caaaaataat tgaggagtaa aaatgaaaaa aattgtaaca
    30421 gtatttttaa tttttttagg aatactttgg gcagaagatc ctgtgattga tgtcgtaaat
    30481 tcaggcgtag tcttaccaaa aatcattgtt aaagacaatt cgaatttaag tgatattaat
    30541 ttaaagcgta gtttttataa tatcattgta aatgacttga aagtaagttc aaattttgaa
    30601 gttgtaagtg atgcaagttc agaagctgca aattacactt ttgaatacga tttgagtaaa
    30661 aatggcaatg ctttaaattt gcatgttaag atcaaagcag gaggcttgga aaaatcaagt
    30721 caaacctatg ctttaaatgg tgtagagcag tatccttttt tggcccacaa aagcgtaaaa
    30781 gcttcggtaa atgcattagg acttgctcct gttgaatgga tggatcataa aattttaatt
    30841 gccagaaatt caagctctaa aaaaagtcaa attatcatgg ccgattatac tttaacatat
    30901 caaaaagtaa tcattgatgg aggattgaat ttatttccta aatggggaaa taaagagcaa
    30961 agtatttttt actataccgc atacgatcat gatagaccaa cgctttatcg ctatgactta
    31021 agaactaata aagcaagtaa aattttagca agtggaggta tggttgtagc aagcgatgta
    31081 agcttagatg gtagtaagtt acttgtgact atggctccaa aagatcaacc tgatgtttat
    31141 ttgtatgatt taaattctaa aaatttaact caacttacga attattcagg catagatgta
    31201 aatggaaact ttataggcgt agatgatagt aaatttgttt ttgttagcga tcgcttgggt
    31261 tatcctaata tttttataca aaatctcaat aatggatctg ccgaacaagc agtttttcat
    31321 ggtaaaaata attctgcagt ttcaacctat aaagattttt tagtatattc tagtcgtgag
    31381 ccaaatcaag taggtgtttt taatatttat ttaatgtcaa tcaatagcac aggtattcgt
    31441 caatttaccg caaacggaaa gaatttattt cctagatttt caagtgatgg cggtagtata
    31501 gtttttatca aatatctcgg agcacagagt gctttaggtg ttattcgtgt taatgcaaac
    31561 aagacttttt attttccatt aaaagttggg aaaattcagt ctattgattg gtaaaaattt
    31621 gtaatttttg gttaaattta attaatttta gatataatgc taacaattta ttaactttga
    31681 aaggtcataa atgaaaaaaa ttctttttag ttctattgca gcatttgcat tggttatcag
    31741 tggttgtagc acaaaaagca ctagcgtaag tggtgataca agtgtagatt cgaatcgtgg
    31801 aacaggtggt agtgatggtt gggatattga ttcaaaaatt tctcaactta atgatacttt
    31861 aggaaaagta tattttgatt ttgataaatt taatatccgc ccagatatgc aaaatgttgt
    31921 taatacaaat gctaatatct tcaacaatga agtaagcggt gtaagcatta ctgttgaagg
    31981 taattgcgat gagtggggaa cagatgagta taatcaagct ttaggtttaa aaagagcaaa
    32041 agcagttaaa gaagctttaa ttgctcaagg tgtaaattct gacagaattg ctgttaaaag
    32101 ctatggtgaa acaaatccag tatgcacaga aaaaacaaaa gcttgcgatg ctcaaaatcg
    32161 tcgtgcagaa tttaaactat caagataatt gatgaaaaaa atattctcag tagctcttat
    32221 cggagctact ttactttatg cagaaagctc tgcttttggt gcaggagatt taaccagtaa
    32281 ttccccctat ggtttaacat caagtgaaaa attactcaag gaaaaattag atactttaag
    32341 caataataat gttcaagcaa attctagaat taatgagatt gaacaaagag tcgaaggatt
    32401 gcaaagtact ttagagggta taaattcgca gtatgccaaa tccaattcta gattaacgca
    32461 acttgaaacc cgttttgaag ctatggaaaa taatttaagc acagaacttc aaaatttaaa
    32521 agcttatgtt gaagaaagta gaaaaattca agatgctaac aataagcaaa ttaaaaaaat
    32581 tttaaccgaa ttaagttctt tggttgattc tattaacgca aattatgtgt ctaaagatga
    32641 cttaaatagt acgaatttaa gtatcaaaaa tacagttgtt gtacctctat cgatcgatga
    32701 taaaaacata acttctagcg atgaaaacaa tgccagtgtt gctccagtgc aagaaaaaga
    32761 agttaaacaa atagatgatt cttggaaaaa gaaaaaaaat aacgaaattt tagacttggc
    32821 tatcaaagat ttaaataata attcttatga gaatagcaaa attaagttaa actatctcat
    32881 atcaaaacaa tacaaacctg caagggcaaa tttttggtta ggagaaattg agtataagca
    32941 aaagaaatac aataatgcta ttgcttatta taaaaaaagt tctgctttga gcaccaaagg
    33001 ggattatttt ccaaagcttt tatatcacac agcgatttct cttgataaga taggagatcc
    33061 aaaaacagct aatgggtttt ataaggcttt aaagacaaat tatcctaatt caccggaagc
    33121 aaaagcttcc cccaatagaa aataatatca aggagaaaaa atggctatag aaaaaaatag
    33181 cgtagtttca atgttttatg aattaaaaga tgcaaataca aatgaagttt tagaatcaaa
    33241 tttatatgct caaccgattt cttttatctt aggcaaaggg caaattttag aagctttaga
    33301 agaagaagtg atgaagcttg attgccctag caatgctgat gtcgtgatta aaaaagataa
    33361 aggcttgggc gaatacgatg aaaatgcagt gcaagtttta ccaaaagagc aatttgcagg
    33421 cattgattta aaaataggta tggagctttt tggcgagggt gaaaacggag aaaccgttcg
    33481 cgtaactgtt aaagaaatca gcgataatga tgtaactatt gattacaatc atccttatgc
    33541 aggtcgtgat ttgctttttt ctttaaatat agtagatgcc agagcagcaa gtgaagatga
    33601 gcttcttaca ggcattatag caggaagcca tagttgtggt tgtggaagcg gacatgggca
    33661 tggacatgat catcacgggc atggcggtgg cggatgctgc ggtggcggtg gcggcggatg
    33721 tggttgccac taagatgaat gctgtattta tttttccagg tcaaggctct caaagtcttg
    33781 gcatgggtaa agatttttat gaaaactcca aaaccgcaaa agaacttcta gaaaatgcca
    33841 gcgatttttg taaaattgat tttaaaaatt tattgtttaa cgaaaatgat gatttaaaca
    33901 aaagtgaatt tacacaacct gctatactct taaattcttt aatggcttat agtgctttga
    33961 gtgaattaaa acctgatatt aaggttaaat ttgctttggg tcattccttg ggtgaatttt
    34021 cagctttggc gatcaatggt gcttttagct ttttagaagc aactatgctt gtgcataaaa
    34081 gaggactttt tatgcaagaa gattgtgcaa aagttgaagc gggtatgatg gtaattttag
    34141 ggcttgatga taaaaaagtg gaagagcttt gtcaaaaagc tagagatgag gataaaaaaa
    34201 tttttgcagc taattataac tgcgatgggc aaatcgttgt tgcaggttta aaacctgatt
    34261 tagcaagcta tgaaagtgta tttaaagaag caggcgctaa aagagctatg cttttaaata
    34321 tgagcgtggc aagccattgt ccgcttttag aaaacgcgtc taataaactt tgcatagagc
    34381 ttgaaaaaat actagagcct acttttaaag ctgtaatttc taatgctaca gctaaagctt
    34441 atacgagca
//
LOCUS       DARAII010000006        30041 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.006, whole genome shotgun sequence.
ACCESSION   DARAII010000006 DARAII010000000
VERSION     DARAII010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 30041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30041
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.006"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..410)
                     /locus_tag="SB143_000234"
     CDS             complement(<1..410)
                     /locus_tag="SB143_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEF9748807.1"
                     /translation="MKRNSEIKELFLKHFDKPTTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPELFKAYPDITSLANANLSSLKTYIQSCSFYNNKAQNLIKMAQSVRENFNAEI
                     PLDEEKLKSLAGVGQKTAHVVLIEWCGANCMAVDT"
     gene            493..1314
                     /locus_tag="SB143_000235"
     CDS             493..1314
                     /locus_tag="SB143_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEF9748808.1"
                     /translation="MRKVSLIAAALIAGVTLNLNAATIATVNGKNISDTEVSEFFAPM
                     LRGEDFKSLPDHQKKALLQQYIMQDLILQDAKKQNLEKDPLYKKELERAKDSILVNVY
                     QEKILNSIKVDSSKVKAFYEQNKEKYIKPAAVQAKHILVSSEQEAKDIIKELKGLKGK
                     ALDDKFSQLAQEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSRAKEQIKFDDVKKGIENGLKFEEFKKVINQKGQDLLNNAKVEYK"
     gene            1314..2378
                     /gene="fbaA"
                     /locus_tag="SB143_000236"
     CDS             1314..2378
                     /gene="fbaA"
                     /locus_tag="SB143_000236"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEF9748809.1"
                     /translation="MGLLDIVKAGVVSGDELNKVYEYAKAQGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPQGDVLGAISGAKHVHLLAKAYGIPVILH
                     TDHAARKLLPWIDGLIEANAEYKKTHGQALFSSHMLDLSEEDLEDNLSTCETYLKKLD
                     SLGISLELELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKEKFGLEVDKPINFVFHGGSGSELKDIKDAVSY
                     GVVKMNIDTDTQWAFWDGVREYEAKNREYLQGQIGNPEGEDKPNKKYYDPRVWLRSGE
                     ESMIKRLELAFEDLNCIGRN"
     gene            2477..3931
                     /locus_tag="SB143_000237"
     CDS             2477..3931
                     /locus_tag="SB143_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEF9748810.1"
                     /translation="MDIRSDEISELILPESKEKKGYLVYLKIIFIPALLYVFILLGYY
                     DIINFKVELHTVVMIGFIFFTALVFARHSSEYAYSIFEQQKDEFKQALKRHIMKHFLT
                     IGKDTKSNANFDDFAYAYVRGARNENFASIGAAIFPMMGILGTFISIALSMPNFSSSD
                     TAALEQEIALLLSGVGTAFYVSIYGIFLALWWMFFEKFGKSKIERLLNRQKNSTSGFF
                     WTKEELDQRYLSESLQHFEKISAIFKQVSNQDFFAELDHTIDRKFGIFQDMLNVEEKA
                     IRLSGEHIKQTMGELSRAQRDQRDLGKMYGEMLNGIGMLNQNLKEINMRMSEQYNRLL
                     DISSEKIQHFDKTLLAFDEKVDRFGKNFELYEKAILESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDKLKQEIKNLNEETNEVMAKIGKIPNPAQEEQDNIENEILSS
                     EKITENTEQTKENQNDSDTLDSNKNFNKEEKEDK"
     gene            3928..4878
                     /locus_tag="SB143_000238"
     CDS             3928..4878
                     /locus_tag="SB143_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEF9748811.1"
                     /translation="MKNEQEEGNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDLR
                     EIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLINSQKVELEANITNY
                     EQLSKELNSSIDNKDKQILILLGQLEKKDEEIRNLQESFDKAKEKVQNLSLIRENLSK
                     ELQAKLDSNITIDQKTGSISLPSEVLFDKDSYTLKNEAKASLRKILSEYFNAIINDPK
                     ILSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKDIRLQKLLMASGRSF
                     SDPVLVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            4888..5757
                     /locus_tag="SB143_000239"
     CDS             4888..5757
                     /locus_tag="SB143_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEF9748812.1"
                     /translation="MLISPIEKIQFQGFEFYIKRDDLLGEINGNKARKLAFYLSQNYN
                     QSQRFISYGGIQSNALVALSIFASKRNLTLIYACEKIPTYLRNNPCGNYKLALENNVY
                     FIENHSDKDLKTFALSLCEKDDVFIEQGVANLNAESGYIQLAKEIESQSKNLGLDFDI
                     FLPSGTGTSAAFLAKNSKFKVFTCACVGDECYLKTQILNLIKNYDFSNLEILKSDKKY
                     HFAKLYLEFYQLYKDLKQECQIEFDLLYDMLGLSIALKREWKNPLLYIHQGGISGNSS
                     MLERYIFKYCKDK"
     gene            complement(5759..6214)
                     /locus_tag="SB143_000240"
     CDS             complement(5759..6214)
                     /locus_tag="SB143_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEF9748813.1"
                     /translation="MKKIVFVCLGNICRSPMAEFVMKDLVKKANLEKEFFITSAGTSG
                     EHDGENMHYGTQNKLKSLNIKYQNFTSKKLTQALCDESDFLITMDNSNFKNVQKNYKN
                     TQNKLLKITDFASHLGYDEVPDPWYSGNFDETYQIISLACKNLLSHLQK"
     gene            6268..7452
                     /locus_tag="SB143_000241"
     CDS             6268..7452
                     /locus_tag="SB143_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9748814.1"
                     /translation="MENFNRTLWVCWFGVFTTSMGLSQIAPILPLYIKELGHTDTSEI
                     AFYSGLAFGITPLGMAIFSPLWAYLGAKYGYKNMLLRASLGMSALTLWLSFAHDAMEV
                     VLIRGLTGIVSGFTAAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGVVAGI
                     FSISAVFDLVAFLLACSFVTIFLFIHERKIQKEAKKNTQEFKENKKLIVIIFITTFII
                     QFGTFGVMPILSLYVEQIYQGENLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKV
                     IFSALIFCGICFYLQSLATNVYALIFVRLLIGIGLGGLLPCVNALLKKGVSAKNLSLV
                     FGFNQTCQFLGNFCGAFGGGLITAHFSVELVFAFICCIFILNAIIFLIFERNYIFSNQ
                     GL"
     gene            7473..8129
                     /locus_tag="SB143_000242"
     CDS             7473..8129
                     /locus_tag="SB143_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEF9748815.1"
                     /translation="MELILLSLIVILLVFVIIKQFKNSSKIEEKDIHISNDITQLKSI
                     GELSVFQVFSKEIVTKKDSAFNGIWKSILGWSLSERQIALIFEFEITFLYDLRDKNFE
                     IIVLDNDHYKIIMPECKYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGLSFSENDKNK
                     LIREAKEEVKELSLNLIRNLESKIHKSARDTLEAIAKGFGAKKVEFEFKDNTQKLDIN
                     "
     gene            complement(8126..8335)
                     /locus_tag="SB143_000243"
     CDS             complement(8126..8335)
                     /locus_tag="SB143_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEF9748816.1"
                     /translation="MPFVNIRITKENGEPTSEQKQELIAGVTDLLTKVLNKNKASTVV
                     IIDEIDTDNYGLGGKSITQVRKEKS"
     gene            complement(8789..9271)
                     /locus_tag="SB143_000244"
     CDS             complement(8789..9271)
                     /locus_tag="SB143_000244"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEF9748817.1"
                     /translation="MSEFLTHPFKPFFDKDSKILILGSFPSVKSREDGFYYQHPRNRF
                     WPILETLFDTRLENITKQQAFLKEKNIAIWDVLQSCKIKNSDDKTISYTKANDLNLIL
                     SQAQIQAIFTTGKSAYRFFTKFHPHLKAIALPSSSPANLNFSFEQLLQSYKIIKNFIK
                     "
     gene            complement(9268..11427)
                     /locus_tag="SB143_000245"
     CDS             complement(9268..11427)
                     /locus_tag="SB143_000245"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEF9748818.1"
                     /translation="MQYSIEINGNLEVFDIEKVAKQAAGAVLMRQGKSVVLAAVAREE
                     KPVEEEFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPQVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGRIEEKFVLNP
                     NNEELKNSTLDLYVAGVKDELLMIEMRALPNQKEDEIFIEAPYADVLTQTTSQSMNEL
                     SEDEILEALSLAQKAILNGSNAYEEAFLKHKKSSDLNFKDEIENFELLAFIENNFHDQ
                     IVQAINQMAKSERASELNKIAEKILNFESATKWDEESILNALAKVKHKIVRSQILNTK
                     KRADGRNLNEVRPIAIETNILPNTHGSCLFTRGQTQALVVATLGSENDAQMVDVLTEK
                     NPINERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSIDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALRAAGVPSLKLVAGVAMGLIFEGDQYAILTDIMGLEDH
                     DGDMDFKVAGSKDGITALQMDIKLGGIDQKILKEALYQAKEGRIHILNIMEEALKEIV
                     VNEEVLPKLELFNVDPSKIVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGNENE
                     QIKAAKDYIINITSSQKNNKKGFKEKDLSNFEIGEEFEGKVKKITNFGAFIELKNGID
                     GLLHNSKSKNLNLSENQILKVKVSEIKNGKISVDLCE"
     gene            complement(11501..13549)
                     /locus_tag="SB143_000246"
     CDS             complement(11501..13549)
                     /locus_tag="SB143_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEF9748819.1"
                     /translation="MWRKILFLSASLTLLNATQVDIYALDAKKQGDILTANDDVIIFS
                     DFYFITANKAIYNEKTGDLELFGDVNILRGQNERSHSNYAKINLNSNEANFNNFFFSN
                     NNLEVWFQSKTSYLDENVFKSEISAVSSCNVEDPDWEIRFSKGWLNRENNFVHLYNAK
                     LYVKDFPIFYLPYFGFSADTHRQSGLLIPKIVLKNSEGLYYEQPIYIAPYENWDLELN
                     PQIRTDRGFGLYSTLRFIDSPYSIGEVNLGAFRENSSYYHDENLKNQSHYGAELKYAR
                     NDLIKTLLGDNFQEGLWIDATYLNDIDYLNLGSRDYRDLNSLVTSKINYFLADENNYY
                     GAYAKYYIDTSALNNDNTLQEYPSFQYHRFLNNFFDERLRYSFDASFHNFYRPVGPYA
                     NQLNLNLPISYHNAFFDDFLHFTFTERFYASFLNYSHYPQKDHEHYFRNTHDFNLYTD
                     LSKAYDNFFHTLNFGLKYVLPGAKSGSISEDYLEEIDKEEEHLGFYTTQYFYNNEGQK
                     KIKHRINIDYLNKQGEFDEISNLLSYYYNNNISFNSEIIYSDLQNRFTNIISQMEINP
                     NPKFNWSFSHAYQNDEYGKYSFIGTRANYLANANYHLFGGIWFDTQRAHANMWELGYT
                     FQRKCWNYSLMYRERIDPQLTSAGITAKNQSGIYFIFNFYPLGGVKYDFSLAETESKI
                     "
     gene            complement(13539..13991)
                     /locus_tag="SB143_000247"
     CDS             complement(13539..13991)
                     /locus_tag="SB143_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEF9748820.1"
                     /translation="MKEDLLTRLERENLTIASFNKRILAYFIDNLVLSLIVFVIFYDK
                     LLNAKDLFDTAQILGDFYLGFLLLHITYQTIFTYLYGASLGKMVCKIIILDEDLLDKP
                     NLNQSCIRSIVRQISDMAFMLGFAWALSNDLRKTWEDYLARTIVVNVA"
     gene            complement(13988..15238)
                     /gene="purD"
                     /locus_tag="SB143_000248"
     CDS             complement(13988..15238)
                     /gene="purD"
                     /locus_tag="SB143_000248"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEF9748821.1"
                     /translation="MKIMILGSGAREYSIALALKRVDENLEFYFAPGNGATESLGTNL
                     NFKDPVVLATYAKEKEFDLCIVGSESFLAEGVVDIFKQHNIPIFGPTKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFILSLTPPIVVKADGLCAGKGVIIVKTHEEA
                     IEEASKMLSGESFGEAGKLIVVEEFLDGFELSIFAVCDGNDFVLLPAAQDHKKLLDGD
                     KGPNTGGMGAYAPSSLANESLLRKIQKDIIIPTLAGMKKEGSEFCGVLFIGIMVVGNK
                     PYVLEFNVRFGDPECEVLMPLIENPLELILATTQKRLRHTKIKIKKDYAVGVVCASEN
                     YPYKSSPKSEISITNIPENTHISYAGVSLEDGKLMADGGRVLVCVGTGSSIEEAQKKA
                     YELCENVHFKGKQFRKDIAHQVIQ"
     gene            complement(15479..16939)
                     /locus_tag="SB143_000249"
     CDS             complement(15479..16939)
                     /locus_tag="SB143_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748822.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFSRQIWNDKKSMPSVGML
                     VEFRTLSSDKKSENGAPVPVSKTITGIKPSKFQEFKEGDFITEHDFWKTDSDDELEDL
                     QNSRRSAYITELYRSIDFDSIEKIPLSFTIPQAIQKYFAHEILSVEALQANLQDEKDI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMIADKKPNIT
                     KIFNETFLSLQCHYQALIATIDTRKNRLASLEAQMKALQSEIQLKSNAANADPEKLKA
                     RQEKLAKLQKEAEYYRTTLKRLGAIQEDFYKKNYNIFENAFKLSREKLFKKIITGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKAALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIETFAQNPYFIVKYAPKKVNYQSLMRDNS
                     FDIVFIDEKHIWESVADIILEGKHFDKIGKTKFKLI"
     gene            17073..17591
                     /locus_tag="SB143_000250"
     CDS             17073..17591
                     /locus_tag="SB143_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEF9748823.1"
                     /translation="MFFYEYLKNPKQIGAFCSSSQKLGFVMTQNINLRQANYIVEIGP
                     GTGVFTENILKYKNKKAQFFAIEINKNMADKLKRKIVNLDIEIGSAENLPYFLRQRNI
                     TYADVIISGIPWSLLRDHEQEKLLKIIHKSLKPNGYFSTFAYVLPTYSSLKFRQKIFS
                     LFAEVRIPKVVW"
     gene            complement(17753..18361)
                     /locus_tag="SB143_000251"
     CDS             complement(17753..18361)
                     /locus_tag="SB143_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEF9748824.1"
                     /translation="MENSIKDSYNKICKKWSEFRKNTSINQCIVDFANNLSPNSRVLD
                     IGCGTGYPIALYLSKQGFQVTGIDISEEMIKQAQKLNLHNATFLVEDILNFKTDKKYD
                     AIIAFDSIWHIRYDKQECIYQIISSLLTSGGLFLFTHGKNDGEIISTMWKESFYHSAL
                     DLEKVHKLLKQNGFDILSSIEDYIEETTDDRELLIIAKKKEL"
     gene            complement(18536..20071)
                     /gene="guaA"
                     /locus_tag="SB143_000252"
     CDS             complement(18536..20071)
                     /gene="guaA"
                     /locus_tag="SB143_000252"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEF9748825.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKEVFNLGLPILGICYGMQLMAHHYKANVAPAGHK
                     EYGKASIEIQKDSDLFKNLPKKQIVWMSHSDKVENLPQDFEVLATSENSPYCVFANEE
                     KKFFALQFHPEVQHSEFGKSILKNFAKYACNCESIWNMGSFAKTQAEKIREEVGKDKV
                     LCAVSGGVDSSVVAALLANAIKDQVIVVFVDNGLLRSDEKEQVEFMFKNTLGINLISI
                     DASKIFLDRLAGVTDPEQKRKIIGNTFIEIFEEEAKKHKDVKFLAQGTLYTDIIESSV
                     IGASKTIKSHHNVGGLPEKMNLKLVEPLKEIFKDEVRALGIELGLSKEIVYRHPFPGP
                     GLAIRIMGEVNRPSLELLRKADVILLEELRSTGWYNKTWQAFCVLLNVKSVGVMGDNR
                     TYDNTICVRVVDASDGMTATFSHIPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            20208..20684
                     /locus_tag="SB143_000253"
     CDS             20208..20684
                     /locus_tag="SB143_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748826.1"
                     /translation="MEKFQSPKIIKNTSAILNDLMSKSHYRPLKTLFFCKDFLNSFPP
                     AKQRLIARIYIKNHILNIVTLNSAAYQELNHDNSKIYIKVLIKKYGKMYPLSGFSDIK
                     DLKIFTQKYNNTIKNNENFTAKKPYIELSLGKFENKFENKILAKKFEEIRQMIRNG"
     gene            20677..22491
                     /gene="uvrC"
                     /locus_tag="SB143_000254"
     CDS             20677..22491
                     /gene="uvrC"
                     /locus_tag="SB143_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEF9748827.1"
                     /translation="MAEILLKNTLKEELQTLPANAGVYQYFNAEGKLLYVGKAKNLKN
                     RVRSYFAFTPNLRANPKNSLRIQKMIEEAVHLEFITTNSEADALILENSFIKQLHPKY
                     NILLRDDKTYPYIYVDFNEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYP
                     LKQKASCKSPCIFYQISRCLAPCDKKITQEEYRLILDKAINALLSPSILVKNLEKQMF
                     HLAQNENYEEAAKIRDQIATIRDLEIKVEIDIAKLEDFEIFALACESSMLSTLRFVVQ
                     NGKIISANSKITPLKNNTDFDKNEIYKQLILENFSVDIPLVANTVYVYEDFEDRELLE
                     EILSQRFDKKISIKVPKIGEKRRICDLAFQNACLNIQKEQKNSDFNIQKELKNYFELE
                     NLPNCIEVFDNSHLQGVANVGAMITYKMGTWDKSNYRKFHLKYKNDYEQMREVLTRRA
                     LEFDKMPAPDLWLIDGGKALLDLAKEIILSSGANVDILAISKEKIDAKAHRAKGGAKD
                     KIHSLKGEFALSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLSSSKLVKSGLSAG
                     VIQKLLAYYGSFEAIYEANFEELCQLVGKKSAQKIKED"
     gene            22493..23686
                     /locus_tag="SB143_000255"
     CDS             22493..23686
                     /locus_tag="SB143_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748828.1"
                     /translation="MLLVWIIFIFNIILAFLSIDFTRIHESLEQIKLTFFASIFILSL
                     TLIFFLFRKKRALARKDQKILLIKNEFIHAEEIDIETSLDLIREKIAHLNQDLFKISH
                     EKETYAKLLEDSLYQIGNIEGVVRCLDEEEASKEIKSLVLNALKHQKEQIRLGLNQAL
                     EYHKSIGVAQGNVLQFEASAAIVSDDGLEAFLLANLLSYFGIENTIFKSLSFDINDFH
                     VVFIKDKILEQSSKKADDFIVFGRSKNLYYEYFLSLPFEKKELENILQRKLDKICALK
                     FQTPYQNNVLLFKQNEFDATLFFNIIEKQCSQNMRVNSFSELKKELKKEAYRLILLDY
                     ELIKFDLEQMRSILSAYKKQHPQSHIIFFSRERVRDFDCVSEVLNDISRNDLIALIRK
                     YLPKN"
     gene            complement(23683..24585)
                     /locus_tag="SB143_000256"
     CDS             complement(23683..24585)
                     /locus_tag="SB143_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEF9748829.1"
                     /translation="MKILFGPINSRRFGRSLGIDLSPSKKQCNFDCVYCELEAQKPQE
                     KQDEIVSVEEIILEVQGALEKNVPFDFLTLTANGEPSLYPHLDELISSLRKIAKDKKL
                     LILSNGTVVLDQDKFNTLLKLDVVKFSLDSAISKTFYRIDRALKNINLEKMIEKMAEF
                     KTQFKGDLVMEILVVKDLNDNEEEFIALNQALAKIAPLRVDLSTIDRPPAYAVKKISE
                     ERLLELSKLITSTPVLLPKRHYEGEKLNFNEEELLKMLHLRSQSEIDIENKLDKTSQL
                     LLDKLIKEEKIKILNLAGVKFYKA"
     gene            complement(24582..25604)
                     /locus_tag="SB143_000257"
     CDS             complement(24582..25604)
                     /locus_tag="SB143_000257"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEF9748830.1"
                     /translation="MIFIDACFKKPTPYTPVWMMRQAGRYLPEYMKVRQEAGDFLSLC
                     KDYKRASEVSLQPVDILGVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFQTPISTLED
                     LNKLDDQNAYKKLNYVYDALKLTREKLPLDKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHEILNKLTQVLKSYLEEQIKAGANAVQIFDSWASALECDKFFDFSF
                     KYMLEISDFIKNKYPHIPVILFPKGISGYLDKIDGNFDVFGVDWSTPLDLARDKLSHQ
                     YTLQGNMEPCRLYDKKAIKQGVENILEIMQNKAHIFNLGHGILPDIPVENAKYFIQLV
                     QESSAK"
     gene            complement(25752..26063)
                     /locus_tag="SB143_000258"
     CDS             complement(25752..26063)
                     /locus_tag="SB143_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748831.1"
                     /translation="MVVKDIRTTSSSMFSATTKVKEKSTSADEFQATLNEVKNKEEKE
                     DKKTSSSEFTNEDLDLSAVKEDFKSYAWQKMREDQYKKNEEDLLNKLFATIDAGNTAK
                     I"
     gene            26306..26911
                     /locus_tag="SB143_000259"
     CDS             26306..26911
                     /locus_tag="SB143_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748832.1"
                     /translation="MKIILLTILSFLSLWGLSFDELIYKNEVRASFDCSKVKNNGKND
                     DELIICNKIGAINEFENKKLALMDNIFISLYQELLKNANENIKEDFKLVVKKMFRERK
                     NCAKVISNDLLQADQDPQSPFVYKTDCIEKTYAKVFLELMQKAKKDTQSKERLKQIFN
                     NQADRYENLIQMSIQDPIDLEIFIDNLAQEGLIDDNARLKL"
     gene            complement(26895..27995)
                     /gene="pdxA"
                     /locus_tag="SB143_000260"
     CDS             complement(26895..27995)
                     /gene="pdxA"
                     /locus_tag="SB143_000260"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HEF9748833.1"
                     /translation="MKKLAISIGDINGIGLEILARSHEKLSQICTPYYFIHESLLQKA
                     LKLLNLELLNAKIVAFKDAKNYEFTLLKKHNSLEIYSFGLPLNLKVDENFDIKAGEID
                     AKSGLYSFLSFKAASYFVYKNHAHTLLTLPIHKKAWEDAGLKFKGHTDALRFFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFQNLSIFLKDFYQETRFKKIGLLGFNPHAG
                     DYGVIGGKEEELMQKAITFVNAFLNSKKDEKFFKKALKDEKLQKELLLNFNTKGVYLP
                     YPLVADTAFTKSNLKACNRLIAMYHDLGLAPLKALYFEKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKISTKSYFEAAKFALELPSKASI"
     gene            complement(27998..28765)
                     /locus_tag="SB143_000261"
     CDS             complement(27998..28765)
                     /locus_tag="SB143_000261"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEF9748834.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIAAKFGDQITLHVRE
                     DRRHAQDFDLENIIRFCKSPINLECALNDEILNLALKLKPYRITLVPEKREELTTEGG
                     LNLNHNKIKKSIEKLQNAQIEVSLFINPSLEDIQKSYELKADFIELHTGHYANLHNAL
                     FSNISHTAFALKEFDLSKKTLQSKFEEELNNIEICAKKGVELGLKVAAGHGLNYKNVS
                     QIANIKEICELNIGQSIVARSVFVGLQNAILEMKALL"
     gene            28821..29798
                     /locus_tag="SB143_000262"
     CDS             28821..29798
                     /locus_tag="SB143_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEF9748835.1"
                     /translation="MLGIDLGSNTLRAVFINEKFEKLDEYEFIIGSAKNLDKTGKISD
                     EAIEKLRNALQEIAKKYDLSQARAVATAAFRKASNTNEIFTRLKQEFQIDFKVIDAKI
                     EAKISVLGMKRGLLNLGLNLDCGYCDLGGASCEFSFRDNFQSFDFGIISFYEKCKIKK
                     IANSFSFKKILQKYPNFPYRFKDKKLKIHFLIHDNFLKTMAFEAFGQSNGLKKALKQS
                     KMKNIVLNSGVPTALAALKKGLNYEKYEAKKINGARLNINDFLTFGQKLWYMDEKKAS
                     FWVGNTRKNYLVAGCFLLFSIFEREKLIVIDEGLREGLCMADLNLKDYQ"
BASE COUNT        10185 a         4392 c         4814 g        10650 t
ORIGIN      
        1 gtatctactg ccatgcagtt tgcaccacac cattcgatca aaaccacatg ggctgttttt
       61 tgtcctactc ctgctaagga ttttaatttt tcttcatcca gtggaatttc ggcgttgaaa
      121 ttttcacgga ctgattgagc cattttgatg agattttggg ctttgttatt ataaaaagaa
      181 caactttgta tataggtttt aaggcttgat aaatttgcat ttgcaagact tgtgatatca
      241 ggataagctt taaaaagctc aggggtgata agattaaccc ttttatcggt gcattgtgca
      301 gaaagcatca cacagactaa aagttcatag agatttgaaa actttaattc tgtagtaggc
      361 ttatcaaaat gttttaaaaa aagttctttg atttctgaat ttcttttcat ttttttattt
      421 taattaatta gctttaaacc aagttgagat ataattgatt ttaatctatt ttattaaaaa
      481 aggaagtcta aaatgagaaa agtttcttta attgccgcag ctttaattgc aggtgtaact
      541 ttaaatttaa atgcagctac tatagctact gtaaatggta aaaatataag cgatactgaa
      601 gtgagtgaat tttttgcacc gatgcttaga ggagaggatt ttaaaagctt gcctgatcat
      661 caaaaaaagg ctcttttgca acaatacatc atgcaagatt tgatactaca agatgctaaa
      721 aaacaaaatt tagaaaaaga tcctctttat aaaaaagaat tagaacgcgc aaaagatagc
      781 atacttgtta atgtttatca agaaaaaatt cttaattcta ttaaagttga ttcttctaaa
      841 gttaaagcat tttacgaaca aaataaagaa aaatatatca aacctgctgc agttcaagct
      901 aagcacattt tagtatctag cgaacaagaa gctaaagata tcattaaaga actcaaaggt
      961 ttaaaaggta aagctttaga tgataaattc agccagcttg ctcaagaaaa atcaatcgat
     1021 ccaggttcaa aaaatcaagg tggagaatta ggttggtttg atcaatcaac aatggtaaaa
     1081 ccattcactg acgcagcatt tgcacttaaa aatggcacca ttacaaccac tcctgtaaaa
     1141 acaaattttg gctatcatgt aatcttaaaa gaaaattctc gtgcaaaaga acaaatcaaa
     1201 tttgatgatg ttaaaaaagg cattgaaaat ggtttgaaat ttgaagaatt taaaaaagtg
     1261 atcaatcaaa aaggtcaaga tttgttaaac aatgctaaag tggaatacaa ataatgggct
     1321 tgttagacat cgtaaaagca ggggttgtta gcggagatga gcttaataaa gtttatgaat
     1381 acgctaaagc acagggtttt gctatccctg ccgttaatgt agtgggaact gattcgatca
     1441 atgctgtttt agaagctgct aaaaaagtaa attctcctgt tatcatccaa ttttctaatg
     1501 gaggagcgaa attttatgca ggaaaaaatt gtccacaagg tgatgtatta ggagcgatta
     1561 gcggggctaa gcatgtgcat ttgcttgcta aggcttatgg tatcccagtg attttacata
     1621 cagatcacgc tgctagaaag cttttacctt ggatagatgg acttatagaa gcaaatgctg
     1681 agtacaaaaa aactcacgga caggctttat ttagctctca tatgcttgac cttagcgaag
     1741 aggatttaga agataatcta agcacttgcg aaacatatct taaaaaactt gattctttgg
     1801 gaatttcact cgaacttgaa cttggttgca ctgggggaga agaagatgga gtggataata
     1861 caggtattga taattctaag ctttataccc agcctgaaga tgtagcactt gcatatgaaa
     1921 gacttgggaa aatcagcgat aaattttcaa tagcagccag ctttggaaat gtacatggag
     1981 tttataaacc aggaaatgta agtttacaac ctgaaattct taaaaattca caaaaatttg
     2041 taaaagaaaa atttggccta gaagttgata agccgatcaa ttttgttttc catggtggaa
     2101 gtggaagcga attaaaagat atcaaagatg cggtgagtta tggtgtagta aaaatgaata
     2161 tcgatacaga tactcaatgg gcattttggg acggagttcg cgaatatgaa gcaaaaaacc
     2221 gtgaatattt gcaaggccaa attggcaatc cagaaggtga agataagcct aataaaaaat
     2281 actacgatcc gcgtgtttgg ctaagaagcg gtgaggaaag tatgataaag cgtttagaac
     2341 ttgcttttga agatttaaat tgtataggaa gaaattaagc ctttggctta aatcttccaa
     2401 attttatttt aaagattttt taaattgctt gataacaatc tttaaaatag aatttagcta
     2461 atggggtatt agtgttatgg atataagatc ggatgaaatt tcagaactca ttctaccaga
     2521 aagtaaagag aaaaaaggat atttggttta tttaaaaatt atttttatac ccgctttgct
     2581 ttatgttttt attttattgg gttattatga tattataaat tttaaagtcg aattgcacac
     2641 tgttgttatg ataggcttta tttttttcac agcccttgtg tttgcaaggc atagttctga
     2701 atacgcatac agcatttttg aacaacaaaa agatgaattt aaacaagcct taaaaagaca
     2761 tattatgaag cattttctta ctataggtaa ggatacaaaa tctaatgcaa attttgatga
     2821 ttttgcttat gcttatgtta ggggtgcaag gaatgaaaac tttgctagta ttggtgcagc
     2881 tatttttcct atgatgggaa ttttaggaac ttttatcagt atagccttgt ctatgcctaa
     2941 ttttagctct agcgatacag cagccttaga gcaagagatc gctcttttgc taagtggtgt
     3001 aggaactgct ttttatgttt caatttatgg tatttttcta gctctttggt ggatgttttt
     3061 tgaaaaattt ggaaagagta agatcgagcg tttgttaaat cgtcaaaaaa attctacaag
     3121 tggatttttt tggacaaaag aagagcttga tcaaagatat ttgagtgaaa gcttgcaaca
     3181 ttttgaaaaa atcagtgcca tttttaaaca agtaagcaat caagattttt ttgcagagct
     3241 tgatcatact atagatagaa aatttggaat ttttcaagat atgctcaatg tagaagaaaa
     3301 agctataaga ttgagtgggg agcatattaa gcaaactatg ggtgagttaa gtagagcaca
     3361 aagagatcaa agagatcttg gaaaaatgta tggcgaaatg ctaaatggta taggaatgct
     3421 taatcaaaat ttaaaagaaa tcaatatgcg aatgtctgaa caatataacc gccttcttga
     3481 tatcagtagt gaaaaaattc agcattttga taaaaccttg cttgcttttg atgaaaaagt
     3541 agatcgtttt ggtaaaaatt ttgaattata tgaaaaagcc attttagaaa gtcaagaaaa
     3601 agtttttgaa ggttttaaag caagtctttt tgagggtatg cataaattta aagaagttta
     3661 tgaagaagaa aaaagtatcg atgcgaaaat caaaatgatg gataaattaa agcaagaaat
     3721 taagaattta aatgaagaaa caaatgaagt gatggctaaa ataggtaaaa ttcctaatcc
     3781 tgctcaagaa gagcaagata atatagaaaa tgaaattctt tcaagcgaaa agataactga
     3841 aaatacagag caaaccaaag aaaatcaaaa tgatagcgac actttagatt ctaataaaaa
     3901 ttttaataaa gaagaaaaag aagataaatg aaaaatgagc aagaagaagg taatttttgg
     3961 atagcctatg ctgacttgat ggcagggcta ctttttgttt ttatcctgtt aataggtgct
     4021 attgtggtta aatacgtttt aactcaaagc gatctaagag aaattaaaga taatcttaac
     4081 aaacaagaag cacgcttaga agaaagtaag gaagagctta gaaataaaga agctattgtt
     4141 tttaaattaa gctctgattt aaacaatgct tcaagtgctt taaatcttat aaattctcaa
     4201 aaagtagaac ttgaagcaaa tatcactaat tatgagcaat taagcaaaga gcttaattca
     4261 tctatagata ataaagataa gcaaattttg attttgctag gtcagctaga aaagaaagat
     4321 gaagaaatta gaaatttgca agaaagcttt gataaagcaa aagaaaaggt tcaaaattta
     4381 agtttgattc gcgagaatct aagtaaagag ctacaagcta aactcgatag caatatcacc
     4441 atagatcaaa aaacaggttc tatttcttta ccttctgagg tattgtttga taaggattct
     4501 tatacgctta aaaatgaagc taaggcgagt ttgagaaaaa ttttaagtga gtattttaat
     4561 gctattatca atgatccaaa gattttgtct aatattgaaa atattatcat tgaagggcat
     4621 acggatagcg atggatctta tatttataat cttgatttat cccaaaagcg tgcttatgaa
     4681 gtgatgaatt ttatctatac tttttataag gatataagat tgcaaaaact tttgatggca
     4741 agtggcagat cgttttctga tcctgttctt gtaaatggag tagaggataa agataaaagc
     4801 cgccgcatag agattaaatt cagtattaaa aatgataatg ctttaaaaga tgttgaaaag
     4861 ttttttgagt ttcactaaga attttaaatg ctaatttctc ctatagaaaa aattcaattt
     4921 caaggatttg aattttatat caagcgtgat gatttgctag gagagatcaa tggaaataaa
     4981 gctagaaaac ttgcttttta cctttctcaa aattataatc agagccaacg ctttataagt
     5041 tatggtggca ttcaaagtaa tgctttagta gcacttagca tatttgcaag taaaagaaat
     5101 ttaactctta tttatgcttg cgaaaagatt cctacttatc taagaaataa tccttgcggt
     5161 aattataaat tagccttgga aaataatgtt tattttattg aaaatcatag cgataaagac
     5221 ttaaaaacat ttgcactttc tttgtgtgaa aaagatgatg tttttataga gcaaggagtt
     5281 gctaatttaa atgccgaatc aggttatatt caactagcca aggaaataga aagtcaaagt
     5341 aaaaatttag gtttagattt tgatattttt ctaccctctg gcacaggaac ttcggctgca
     5401 tttttagcta aaaattccaa atttaaagtt tttacttgtg cttgtgttgg agatgagtgc
     5461 taccttaaaa ctcaaatttt aaatcttatt aaaaattatg atttttcgaa tttagaaatt
     5521 ctaaaaagtg ataaaaaata tcattttgct aaactttatc tagaatttta tcagctttat
     5581 aaagatttaa aacaagaatg tcaaatagaa tttgacttgc tttatgacat gctaggattg
     5641 agcatagcct taaaaagaga atggaaaaat cccttgcttt atatccacca aggaggaatt
     5701 tctggaaatt cctctatgtt agaaagatat atatttaaat attgtaaaga taaatgattt
     5761 atttttgtag atggcttaaa agatttttac acgctaaaga aatgatttga taggtttcat
     5821 caaaattccc actataccat ggatcaggga cttcatcata tcctaaatga gaagcaaaat
     5881 cagtgatttt taaaagttta ttttgagtat ttttataatt tttttgaaca ttcttaaaat
     5941 tagaattatc catggtgatt aaaaaatcac tttcatcaca aagtgcttga gtgagttttt
     6001 tgcttgtaaa attttgatat tttatattta agcttttaag tttattttga gtgccatagt
     6061 gcatattttc tccatcgtgt tctcctgagg ttccagcact ggttataaaa aattcttttt
     6121 ctaaatttgc ttttttaaca agatctttca taacaaattc agccatgggg gaacgacaaa
     6181 tatttccaag acatacaaaa actatctttt tcattttcat ccttgaaatt taattgaaaa
     6241 ttataaaaaa tatcatacaa taattttatg gaaaatttca ataggacttt atgggtatgt
     6301 tggtttggcg tctttactac aagtatggga cttagtcaaa ttgctccaat cttgccttta
     6361 tatatcaaag aattaggaca tacagatact agcgaaatcg cattttactc aggattagct
     6421 tttggaatca caccgcttgg aatggctatt ttttcacctt tgtgggcata tttgggtgca
     6481 aaatacggct ataaaaatat gctacttcga gcaagtttag gaatgtcagc tttaacgctg
     6541 tggcttagtt ttgctcatga tgctatggaa gtggttttga tacgaggttt aacgggtatt
     6601 gtatcaggat ttaccgcagc agctgttgtt tttatcgctg taatagcacc caaagaaaaa
     6661 gtagcttatg ctttggggac actttctact gcatctatca gtgggagttt gttaggtcct
     6721 ttatttggtg gagttgtggc aggaattttt agcattagtg cagtttttga tttggtagcc
     6781 tttttgcttg cttgttcttt tgtgacaatt tttcttttta ttcatgagag aaaaattcaa
     6841 aaagaagcaa aaaaaaatac tcaagaattt aaagaaaata aaaaacttat tgttattatt
     6901 tttatcacaa cttttatcat tcagtttgga acttttgggg ttatgcctat tttaagtctt
     6961 tatgtagaac aaatttatca aggtgaaaat ttggctcttt gggcaggtat agttgtagct
     7021 gcaagtggga ttagcaacct tttctttgcg ccaaaacttg gaaaaatagc agataaaatt
     7081 ggccctagta aggttatttt tagcgctttg atattttgtg gaatttgttt ttatttacaa
     7141 tccttggcta ccaatgttta tgcacttatt ttcgtaagat tgcttatagg aataggtctt
     7201 ggaggacttt tgccttgcgt gaatgctttg cttaaaaaag gtgttagtgc taaaaattta
     7261 agccttgtat ttggctttaa tcaaacttgt cagtttttag gaaatttttg cggtgctttt
     7321 ggaggaggat tgataacagc gcattttagt gtagaacttg tttttgcttt tatttgctgt
     7381 atttttattt taaatgctat aatttttttg atatttgaaa gaaattatat tttttctaat
     7441 caaggtttat aattctttag aaaggtgatt ttatggaact cattttactt agtttgattg
     7501 ttattttgct tgtatttgtc attataaagc agtttaaaaa tagctctaaa atagaagaga
     7561 aggacattca tattagcaat gatattaccc aacttaaatc cataggagag cttagtgttt
     7621 ttcaagtctt tagtaaagaa attgttacta aaaaagatag tgcttttaac ggaatttgga
     7681 aaagtatttt gggttggtct ttaagcgaaa gacagattgc tttgattttt gaatttgaga
     7741 tcacattttt atatgattta agagataaaa attttgaaat catagtttta gataatgatc
     7801 attataagat tattatgcct gaatgcaaat acaagcacag cattatagat atgaaatttt
     7861 atgatgaaaa aaatgctaaa tttttgcctt ttttactgcc tgattctatt aatagcacag
     7921 gacttagctt tagtgaaaat gacaaaaata aacttataag agaagccaaa gaagaggtta
     7981 aagaattgtc attaaatctt attagaaatt tagaaagtaa aattcacaaa agtgctagag
     8041 atactttaga agctatagcc aaaggttttg gagcaaaaaa ggtagagttt gaatttaagg
     8101 acaatactca aaagctagat ataaactagc ttttttcttt tcttacttga gtgatacttt
     8161 ttccacctaa gccgtaattg tctgtatcga tttcatcaat gattactacg gttgaggctt
     8221 tgtttttgtt taaaacttta gtgagtaaat ctgtcactcc tgcgataagc tcttgttttt
     8281 gttcgcttgt aggttcaccg ttttctttgg taatgcgtat atttacaaaa ggcatttaaa
     8341 actcctttat atatttttta ataattttaa atagaaaaca ttaatacaag cttattagaa
     8401 aagctcattt tttataaaaa ttattttgat aattaatatt aaatttataa aaacaagatt
     8461 ataatttaat atcagtatta aaatataaat tcatctatag tttaaattta tataaataaa
     8521 aaatgactca ctatcacaaa agctgattaa aatttgctaa aaggatgtca taaatcttaa
     8581 aatgtttgat ttttttataa attatatgat tttttgtgct aaagatcttt ctaaattgtt
     8641 tttaggaact ttagctttat ttttatttgc cttttttgga tttatgtttt ttatatgcga
     8701 aggtgtgttt ttatatgtat tacttttttg tgaaataatt ttatttttat atatgctttt
     8761 gggtattttt tacatacgta atcaaaaatt attttataaa atttttgatt attttatagc
     8821 tttgcaaaag ttgttcaaaa gaaaaattta aatttgcagg agagcttgag ggtagggcta
     8881 tggcttttaa atgaggatga aatttagtaa aaaatcgata agcacttttc cctgtggtaa
     8941 aaatagcttg gatttgtgct tgagaaagga ttaaatttaa atcattagcc tttgtgtaac
     9001 ttatggtttt atcatctgaa tttttaatct tacagctttg aagcacatcc caaatggcga
     9061 tatttttttc ttttaaaaac gcttgttgtt ttgttatatt ttctaatctt gtatcaaaaa
     9121 gtgtttctag tataggccaa aaacgatttc ttgggtgctg gtagtaaaat ccatcttctc
     9181 ttgattttac cgagggaaaa gatcctaaaa ttaaaatttt agaatcctta tcaaaaaagg
     9241 gtttaaaagg atgagttaaa aactcactca ctcgcataaa tccacagaga ttttgccatt
     9301 tttaatctca cttactttta cttttaaaat ttgattttca cttaaattga gatttttact
     9361 tttagaatta tgaagcaagc catcaattcc atttttaagt tctataaagg ctccaaaatt
     9421 cgtgattttt ttgacttttc cttcaaattc ttcgccgatt tcaaagtttg atagatcttt
     9481 ttctttaaag ccttttttat tatttttttg agaacttgtg atattgataa tataatcttt
     9541 tgcggcttta atttgttcgt tttcattgcc cgcaattttt acttcaccct tttcacgatc
     9601 taagtctata gaaacaccaa atttttcaat aatttctttg atagtttttc cagcttgacc
     9661 tatgatatcg actatttttg aaggatcaac attgaaaagc tcgagttttg gcaatacctc
     9721 ttcattaaca acaatttcct taagtgcttc ttccatgata tttaagatat gaattctacc
     9781 ttctttagct tgatacaagg cttctttgag tattttttga tcaataccgc ccaatttgat
     9841 atccatttgt aaggctgtga taccgtcttt gctacctgct actttaaaat ccatatcccc
     9901 atcatgatct tctaagccca tgatatcagt taaaatagca tattgatcgc cttcaaaaat
     9961 aagccccata gctactcctg ctacaagttt taagctaggt actcccgctg ctcttaaggc
    10021 taaagaccct ccacaaaccg ttgccataga actagagcca ttgctttcta aaatttcact
    10081 taccaaacgg ataacataag gataattttc atctatgctt ggataaaggg ctcttttggc
    10141 taagtttcca tgtcctaact ctcttcttcc aggtgctttg atagggcttg cctcgcctac
    10201 cgaaaaacct ggaaaattat aattaaccat aaagcgttca ttgataggat ttttttcggt
    10261 taacacatca accatttgcg catcattttc actacctaaa gtcgccacaa ccaaagcttg
    10321 agtttgtccg cgtgtaaaaa ggcaagagcc atgtgtatta ggtaaaatat ttgtttctat
    10381 ggcaatagga cgcacttcat ttaaatttct accatctgct cttttttttg tatttaaaat
    10441 ttggctacga acgattttat gtttgacttt tgctagggca tttaaaatac tttcttcatc
    10501 ccattttgtc gcgctttcaa aatttaatat tttttcagca attttattta actcactcgc
    10561 tctttcactt tttgccattt gattgatagc ctgtacgatt tgatcgtgaa aattattttc
    10621 tataaaggcg agaagttcga aattttctat ttcatctttg aaatttaaat cgcttgattt
    10681 tttatgtttc aaaaaagctt cttcataagc attagagcca tttaatatag ctttttgggc
    10741 tagacttagc gcttctaaaa tttcatcttc gctaagttca ttcatgcttt gtgaagttgt
    10801 ttgggttaaa acatctgcat aaggagcttc gataaagatt tcatcttctt tttgattagg
    10861 taaagcacgc atttctatca ttaaaagctc atctttaacc cctgctacat aaagatcaag
    10921 ggtgctattt ttaagttctt cattgtttgg atttaggaca aatttttctt ctatgcgacc
    10981 tatgcgaact ccacaaacag gagctttcat aggaatatca ctaagataaa gtgctacgct
    11041 tgctgcattt agactcataa cttgaagatc tacttgagga tcagcagaaa gaaccattac
    11101 gacaatttgt gtcgggtagg catatccttt tggaaaaagc ggacgcaaac ttctgtctat
    11161 aatgcgtgcg gttaaagttt ctgcatcgct tggtttggtt tctcttttaa catagccgcc
    11221 tgggattttt cctgctgcat aggctttttc tatatactga acagttagag gcaaaaattc
    11281 ttcttcaaca ggcttttcct ctcttgcaac cgcggctaaa acgacacttt ttccttgtcg
    11341 cataagcaca gcacctgcag cttgtttagc tactttttct atatcgaata cttctaaatt
    11401 accattgatt tctatactgt attgcatcat ttgtcctttt tttctatata ataaatttgt
    11461 caaactttta aaaatattta gcaaatctca ttccttaatt ttaaatttta ctctccgttt
    11521 ctgctaaaga aaaatcgtat ttaactccac ctaaaggata gaagttaaaa ataaaataaa
    11581 taccgctttg atttttagca gtaattcccg cacttgtaag ttgcggatca attctttctc
    11641 tatacattaa agaataattc caacatttgc gttgaaaagt atatccaagc tcccacatat
    11701 tagcatgcgc tctttgggta tcaaaccaaa ttcctccaaa caaatgataa tttgcatttg
    11761 caaggtaatt tgcgcgcgtg cctataaaac tatattttcc atactcatcg ttttgataag
    11821 catgcgaaaa actccaattg aatttagggt taggattgat ctccatttga ctgatgatat
    11881 ttgtaaaacg attttgaaga tcagagtaaa taatctcact attaaaactg atattgttat
    11941 tataataata gcttaataaa ttgcttatct catcaaactc accttgcttg tttaaataat
    12001 caatattaat tctatgtttg attttttttt gaccttcatt attgtaaaag tattgagtag
    12061 tataaaagcc aagatgttcc tcttctttgt caatttcttc aagataatct tctgaaatac
    12121 ttcctgattt ggctcctgga agaacatatt ttaacccaaa attaagagta tgaaaaaaat
    12181 tatcatatgc tttagataaa tcagtataaa gattaaaatc gtgcgtattt ctaaaataat
    12241 gctcatgatc tttttgagga taatgactat agtttaaaaa tgaagcataa aagcgttcgg
    12301 taaaagtaaa atgcaagaag tcatcaaaaa aagcattatg ataagaaata ggcaaattta
    12361 aattcaattg atttgcataa gggcctacag ggcgataaaa attatgaaaa gatgcatcaa
    12421 aagaataacg caagcgttca tcaaaaaaat tattcaaaaa acgatgatat tgaaagcttg
    12481 gatattcttg taaggtatta tcgttattta atgcagaagt atcgatataa tactttgcat
    12541 aagctccata ataattattt tcatccgcta gaaaataatt gatttttgaa gtaactaatg
    12601 aatttaaatc acgataatcc ctgctgccaa gattaagata atctatatca ttaagatagg
    12661 tagcatctat ccataagcct tcttgaaaat tatcgcccaa cagggtttta attaaatcat
    12721 ttctagcata ttttaattct gcgccgtaat gactttggtt ttttaaattt tcatcatgat
    12781 aataggatga attttctcta aaagctccta aatttacctc tcctatagaa taaggagagt
    12841 cgataaatct taaggttgag taaagcccaa aaccacgatc ggttctaatt tgaggattta
    12901 attctagatc ccaattttca taaggtgcga tataaatagg ctgttcataa tacaaacctt
    12961 cgctgttttt taagactatt tttgggatta aaagtccgct ttggcggtgg gtatctgcac
    13021 taaaaccaaa atagggtaaa taaaatatag gaaaatcttt aacatataat tttgcattat
    13081 ataaatgaac aaaattattt tccctattga gccatccttt agaaaagcga atttcccaat
    13141 caggatcttc gacattacaa cttgaaacag ctgaaatttc gcttttgaaa acattctcat
    13201 ctaaatagct agtcttgctt tgaaaccata cttctaaatt attattagaa aagaaaaaat
    13261 tattaaaatt agcttcattt gaatttaaat tgattttagc atagtttgaa tgagagcgtt
    13321 cattttgtcc tcttaatata ttcacatcac caaaaagctc taaatctccg gttttttcat
    13381 tgtaaatagc cttattggca gtgataaaat aaaaatctga aaaaataatc acatcatcgt
    13441 ttgcagtgag tatatcccct tgttttttag catcaagtgc atagatatca acttgagtgg
    13501 cattgagtaa agtaagacta gcgcttaaaa ataaaatttt acgccacatt aactactatt
    13561 gtccttgcta gataatcttc ccaagttttg cgtaaatcat tgcttaaagc ccaagcaaag
    13621 cccaacataa atgccatatc gcttatttgc ctaacgattg agcgtatgca gctttggttt
    13681 aaattgggtt tgtctaataa gtcttcatct aaaataatga ttttgcatac catttttcct
    13741 aaacttgccc catataaata agtaaaaatt gtttggtaag taatatgaag caataaaaat
    13801 cctaagtaaa aatcgcccaa aatttgagct gtatcaaata aatccttagc attaagtaat
    13861 ttatcataaa aaataacaaa tacaatcagc gaaagtacaa gattatcgat aaaatatgcc
    13921 aatatccttt tattgaaact agcaatggta agattttctc gctcaagacg cgtaagtaaa
    13981 tcttctttca ttgaataacc tgatgagcga tatcttttct aaattgcttg cctttaaaat
    14041 gaacattttc acaaagctcg taagcttttt tctgtgcctc ttctatgctt gagcctgtac
    14101 caacgcaaac caatacacgc ccaccatctg ccataagttt accatcttct aaacttactc
    14161 cagcataaga aatatgtgta ttttcaggaa tatttgttat agaaatttca ctttttggag
    14221 agcttttgta aggatagttt tcactcgcgc atactacgcc cactgcataa tcttttttaa
    14281 tttttatctt ggtgtgtctt aaacgctttt gtgtagtggc taaaataagt tctaaaggat
    14341 tttcaatcaa aggcattaaa acttcacatt caggatcacc aaagcgcaca ttaaattcca
    14401 agacataagg cttattgcct acaaccataa tacctataaa caataccccg caaaattcac
    14461 tgccttcttt tttcatacct gcaagagttg ggataatgat atctttttgt atttttctaa
    14521 gcaagctttc attagctaaa gaacttggag cataagctcc cataccaccc gtatttggtc
    14581 ctttatcccc atctaaaagt tttttatgat cttgtgcagc aggtaaaagc acaaagtcat
    14641 tgccatcaca taccgcaaaa atactaagct caaagccatc taaaaattct tccacaacga
    14701 taagtttacc cgcttctcca aagctttctc cacttagcat tttagaagcc tcttctatgg
    14761 cttcttcgtg agtttttacg ataattactc ctttgccagc acaaagccca tcagctttaa
    14821 cgactatagg aggagttaag cttaatataa agttttttgc tttttctata tcatttgtgt
    14881 ttaaaaattt tgctgtttta atacgatatt tttttaaaaa gcttttcatg aaagatttag
    14941 aagtttcaag catagctgca gcttttgtag gtccaaaaat aggaatattg tgttgtttaa
    15001 aaatatctac aacgccttca gctaaaaaac tttcactacc cactatgcat agatcaaatt
    15061 ctttttcttt tgcataagtg gctaaaacta caggatcttt aaaattgaga ttggttccaa
    15121 gactttcggt agcaccatta ccaggggcaa agtaaaattc taaattttca tccacacgct
    15181 ttagcgctaa agcgatagaa tattcacgag caccgctacc caaaatcatt attttcattt
    15241 attctccttg tataaaaccc aaacagccgc ttaataaaga ttgaccccaa aaagtcaaag
    15301 aaaaccgtta ggcgattttt aaaggctgca acttctcgct tctttcgaaa ctcaaacgac
    15361 gccacagaac acggtaaatc gcacaatcac agttaataaa aatatgttgg atcactttaa
    15421 atatcacgaa ctgtttaggc aagcaaatta tagccttatt tagcttaaaa ttctatgttt
    15481 aaatcagttt aaatttggtt tttcctattt tatcaaaatg ttttccttct aaaataatat
    15541 ctgctacact ttcccatata tgtttttcat cgataaacac tatatcaaaa ctattatcac
    15601 gcattaaaga ctgataattg acttttttag gggcgtactt tactatgaaa taaggatttt
    15661 gcgcaaaggt ttctattttt aatttacaaa gcaaatccaa atccgaagtc acgactaaaa
    15721 atttttttct ttgttctttg gtaatttttt ggatataaac taaaagtttt tgatcaaaag
    15781 gattaagcgc tgctttgttt aagcgactta gataatgctc tgcaaatgaa agagaacaaa
    15841 aggaattttc tatattgctc attgtaaaat atgaattttt aacccctgat gattttaagg
    15901 acaggtgcca aattttaaca tccattatcg tagcacataa attaagacct gtaattattt
    15961 ttttaaagag tttttcgcgt gaaagcttga aagcattttc aaaaatatta taatttttct
    16021 tataaaaatc ctcttgtata gcacccagtc ttttaagggt tgttctataa tactccgctt
    16081 ctttttgaag ttttgctaat ttttcttgtc ttgctttgag tttttcagga tctgcattgg
    16141 ccgcattgct tttaagttga atttcagatt gtaaagcttt catttgtgct tcaagtgaag
    16201 caaggcggtt ttttcttgta tctatagtgg ctattaaagc ttggtaatgg cattgtaaag
    16261 ataagaaagt ttcattaaat attttagtga tattgggttt tttatctgct atcatttgtt
    16321 tgtaagaatt ttctaagtgc atcataatgc tttttagggc gctaaattgg gtttgatcta
    16381 tactattatc cataaaaatt aaagtatcat aagctttaaa taaaaatctc ttaagaatga
    16441 gatagtccaa aatacaagga atatcttttt catcttgtaa attggcttgc aaggcttcaa
    16501 cagataaaat ttcatgggca aaatattttt gtatggcttg aggaatagta aaagataagg
    16561 gaattttttc tatagaatca aaatcaatgc ttctataaag ttctgtaata tacgcacttc
    16621 tgcgagaatt ttgtaaatct tcaagctcat catcactatc ggttttccaa aaatcatgtt
    16681 cagtgataaa atcaccctct ttaaattctt gaaatttgga aggttttatc cctgtgatag
    16741 ttttgcttac aggcacagga gcgccgtttt cagacttttt atcactagag agcgtgcgaa
    16801 attcaacaag catcccaaca cttggcatac tttttttatc attccaaatt tgacgactaa
    16861 agtcaaaaaa agtatttgct gaattcgtta cagttccacg ccctgtggaa tccatatata
    16921 tagctatttt tccatgcata tttcatcctt gaaagttttt aaaagataat tttagcttta
    16981 tttttataaa aattttataa gcaaaagaat aaaattacat gtttgatttt aaaatttttt
    17041 tagttatatt tttttaccat aggaaaaatt gaatgttttt ttatgaatat cttaaaaatc
    17101 caaaacaaat cggtgctttt tgttctagct ctcaaaagct aggttttgtt atgactcaaa
    17161 atattaattt gcgtcaagca aactatatcg tagagattgg acctggcaca ggtgttttta
    17221 ctgaaaatat tttaaaatat aaaaataaaa aagcacaatt ttttgctata gaaatcaata
    17281 aaaatatggc agataagctt aaaagaaaaa ttgtaaattt ggatatagaa atagggagtg
    17341 ctgaaaattt accttatttt ttaaggcaaa gaaatatcac ctatgcagat gtgattataa
    17401 gtggaattcc gtggagtttg cttagggatc acgagcaaga aaagctttta aaaatcatcc
    17461 ataaaagttt aaaacctaac ggatatttta gcacctttgc ttatgtgcta cctacttatt
    17521 caagtttaaa atttcgtcaa aagatatttt ctctttttgc agaggtgaga attccaaaag
    17581 ttgtttggta aaatttccca cccgctgtgg tgtattattg taagaagtaa atttttatcc
    17641 ccattttttt gataaaacac aacttaatgc tttattacac ggattgtcct aaaaataagc
    17701 acgcattgta aaatttttgg attaaagctt gataatttta aataaagcta tattataatt
    17761 ctttcttttt agcaataatg agcaattctc gatcatccgt agtttcttct atataatctt
    17821 ctatggaaga taagatatca aatccgtttt gctttaataa tttatgtact ttttctaaat
    17881 ctaaagcact atgataaaat gattctttcc acattgtgct tataatttcg ccatcatttt
    17941 ttccatgagt aaataaaaac aatccaccag atgtcaacaa agaagaaatg atttgataaa
    18001 tacattcttg tttatcatac ctaatgtgcc aaatagaatc aaatgcgatg attgcatcat
    18061 attttttatc tgttttgaaa tttaaaatat cctctactaa aaaagtggca ttatgtaagt
    18121 taagtttttg tgcttgtttt atcatttctt ctgaaatatc tatccctgta acttgaaatc
    18181 cttgttttga taaatataaa gcgataggat atccagttcc acaaccaata tctagcactc
    18241 ttgaatttgg acttaaatta tttgcgaagt cgacaatgca ttgattgatt gaggtatttt
    18301 tgcgaaattc actccacttt ttacaaattt tattgtatga atcttttatg ctattttcca
    18361 tccatattcc taaaaatttt aacactcttt gatttttata ataaaattaa tacatttaat
    18421 ataagctttt tctatgactt tatatgctag ttttttatgt attaaaaatt tgttaatgag
    18481 ggttttaaat tcttgaaaac ctgtatatta ttatcaggtt ttcagatttt ttaatttatt
    18541 cccattctat agttgcaggt ggtttacttg agatatcata aactacgcgg ttaatacctt
    18601 caacctcatt gataatacga cgcgagatat tttctaaaat ttcataaggt atgtgtgaaa
    18661 aagtcgctgt cattccatca cttgcatcaa caacacgaac acaaatggta ttatcataag
    18721 ttcggttatc tcccataaca ccaacgcttt ttacatttaa caatacacaa aaagcttgcc
    18781 aagttttatt ataccaacct gtgcttctta gttcttcaag taagattaca tctgctttgc
    18841 gtagtaattc aagacttggg cgattgactt ctcccatgat gcgtatagca agaccagggc
    18901 ctgggaaagg atggcgataa actatttctt tgcttaatcc aagctcgata cctaaagcac
    18961 gcacttcgtc tttaaaaatt tcttttaatg gctcaacaag tttaagattc atcttttcag
    19021 gcaatccacc tacattgtgg tggcttttga tagttttgct tgcacctata accgaacttt
    19081 ctatgatatc agtataaagt gtgccttgag ctaaaaattt cacatctttg tgttttttag
    19141 cttcttcttc aaaaatttct ataaaggtat tgcctatgat tttgcgtttt tgctcaggat
    19201 cagtaactcc tgctaagcga tctaggaaaa tcttgcttgc atcaatgctt ataagattaa
    19261 tccctaaagt gtttttaaac ataaattcaa cttgttcttt ttcgtcactt cttaaaagtc
    19321 cattatctac aaaaactact ataacttgat ctttgattgc atttgctagt aaggctgcta
    19381 cgacactgct atctaccccg ccgcttacag cacaaagaac tttatctttg cccacttctt
    19441 cgcgaatttt ttcagcttga gtttttgcaa aagatcccat attccaaata ctttcgcaat
    19501 tgcaagcata ttttgcaaaa tttttcaaga tgcttttgcc aaattcactg tgttgtactt
    19561 cagggtgaaa ttgcaaggca aagaattttt tctcttcatt tgcaaaaaca caatacggac
    19621 tattttcact tgttgctaaa acttcaaaat cttgtggtaa attttcaacc ttatcagaat
    19681 gactcatcca aacgatttgt tttttaggta gatttttaaa caaatcgcta tctttttgaa
    19741 tttctatact tgctttgccg tattctttgt gtcctgctgg agcaacattg gctttataat
    19801 gatgagccat gagttgcata ccataacaaa ttccaagtat gggtaagcct agattaaaaa
    19861 cctctttatc acaaaagtac gcatctgttg cataaacact tgcagggcca ccacttaaaa
    19921 taataccctt aggttctttc gctttgatat ctgctaaact tacattaaaa ggcaaaatct
    19981 cagcataaac gccttgctct ctcaatcttc ttgctataag ctgagtatat tgcgatccaa
    20041 aatctaaaac taaaatatct gcttttttca ttctaccacc tatttaattg ttcgtatttt
    20101 ttaatgcttt ttattgaacc attttgttcg tagctagtgt attgtgggtt gcccttatag
    20161 ccacatgcac acaaaaaaat taagaaaaaa aatgctaaaa tcatcttatg gaaaaatttc
    20221 aaagtccaaa gataattaaa aatactagcg ccattcttaa tgacttgatg agtaagtctc
    20281 attatcgacc cttaaaaacc ttattttttt gtaaagattt tttaaattct tttccgcctg
    20341 ccaaacagcg tttaatcgct agaatttata taaaaaatca tattttaaat atagtgactt
    20401 taaattcagc cgcttaccaa gaattaaatc acgataatag caaaatttat attaaagttc
    20461 tcataaaaaa atacggaaaa atgtatcctt tgagtggatt ttcagatata aaagatttaa
    20521 aaatttttac acaaaaatac aataatacaa taaaaaataa tgaaaatttc acggctaaaa
    20581 aaccctatat agaattaagc cttggaaaat ttgaaaataa atttgaaaat aaaattttag
    20641 caaagaaatt tgaagaaata aggcagatga taagaaatgg ctgaaatttt acttaaaaat
    20701 actctcaaag aagagcttca aaccctacct gcaaatgctg gagtgtatca gtattttaat
    20761 gccgaaggaa agcttttata tgtaggcaag gctaaaaatc ttaaaaaccg cgtaagatct
    20821 tattttgctt ttaccccaaa tttacgcgcc aatccaaaaa attctttaag aattcaaaaa
    20881 atgatagaag aagcggtgca tttggaattt attacaacaa attcagaagc tgatgctttg
    20941 attttggaaa attcttttat caagcaactt catccaaaat acaatatttt actaagagat
    21001 gataagactt atccttatat ttatgtagat tttaatgaag aatttccgcg ttttgaaatc
    21061 actagaaaat tagttaaaaa aagtaaaatc aaatattttg gccccttttt taaaggagct
    21121 agagagcttt tagatgcgct ttatttatac tatcctttaa agcaaaaagc aagttgtaaa
    21181 tctccttgta ttttttatca aatttctcgt tgtcttgcgc cttgtgataa aaaaattacc
    21241 caagaagaat atcgtttgat tttagataaa gctatcaatg ctcttttaag ccctagtatt
    21301 ttagtgaaaa atttggaaaa acaaatgttt catttagccc aaaatgagaa ttatgaagaa
    21361 gcggcaaaaa taagagatca gattgctacg ataagggatt tggaaattaa agttgagatt
    21421 gatatcgcta aattagaaga ctttgaaatt tttgctttag cttgtgaaag ctctatgctt
    21481 tcaactttgc gttttgtggt gcaaaatgga aaaatcatca gcgctaattc taaaatcact
    21541 ccgcttaaaa acaatacaga ttttgataaa aatgagattt ataaacagct tattttagaa
    21601 aattttagcg tagacattcc tttggttgca aatactgttt atgtttatga ggattttgaa
    21661 gacagggagc ttttagaaga aattttaagc cagagatttg ataaaaaaat cagcattaaa
    21721 gttcctaaaa taggggaaaa aagaagaatt tgtgatttgg catttcaaaa tgcgtgttta
    21781 aatatacaaa aagagcaaaa aaatagtgat tttaatatac aaaaagaact taaaaattat
    21841 ttcgagcttg aaaatctgcc aaattgtata gaagtttttg ataattctca tttgcaaggt
    21901 gtggcgaatg taggagctat gataacttat aaaatgggta cttgggataa gtcaaattat
    21961 agaaaatttc atttaaaata caaaaatgat tatgagcaaa tgcgtgaagt tttaacgcgt
    22021 agagcattag aatttgacaa aatgcctgct cctgatttgt ggcttataga tggaggaaag
    22081 gctttgcttg atttagctaa agaaatcatc ttaagtagtg gggcaaatgt tgatatttta
    22141 gcaatctcaa aagaaaaaat cgatgctaaa gctcaccgcg ctaaaggagg ggctaaagat
    22201 aaaattcact ctttaaaagg agaatttgcc ctaagcatta acgataaaaa attacaattc
    22261 ttacagaaat taagagatga agcacatcgt tttgccataa gttttcatca aaacactaag
    22321 aaaaaacaag atttatcaag ctctaagctt gtaaaatcag gacttagtgc gggagttata
    22381 caaaaacttt tggcgtatta tggaagtttt gaagctattt atgaggcaaa ttttgaagaa
    22441 ttgtgccaat tagtaggaaa aaaatcagca caaaaaataa aggaagattg atttgttatt
    22501 ggtttggatt atttttattt ttaatattat tttggctttt ttaagtatag attttacaag
    22561 aattcatgaa agccttgagc aaattaaact tacttttttt gctagtattt ttattttgtc
    22621 tttaacttta atatttttcc tttttcgaaa aaaacgagct ttggctagga aagatcaaaa
    22681 aattttatta attaaaaatg aatttataca tgctgaagag atagatatcg aaacgagttt
    22741 ggatttgatt cgggaaaaaa tagcacattt aaatcaagat ttatttaaga tttctcatga
    22801 aaaagaaact tatgcaaaat tgctagagga tagtttgtat caaattggca atattgaggg
    22861 cgttgtaaga tgtttagatg aagaagaagc aagcaaggaa atcaaatcac ttgttttaaa
    22921 tgcattaaaa catcaaaaag aacaaattag acttggactt aatcaagctt tagaatacca
    22981 taaaagcata ggggtggcac agggcaatgt tttgcaattt gaagcaagtg ctgcgatagt
    23041 aagtgatgat gggcttgaag catttttgct agcaaatttg ttgtcttatt ttggcataga
    23101 aaatactatt tttaagagtt tgagttttga tatcaatgat tttcatgtgg ttttcattaa
    23161 ggataaaatt ttagagcaaa gttctaagaa agctgatgat tttatcgtgt ttgggcgtag
    23221 taaaaactta tattatgagt attttttaag cctacctttt gaaaaaaaag agcttgaaaa
    23281 tattttgcaa agaaaacttg ataaaatttg tgctttaaaa tttcaaactc cttatcaaaa
    23341 taatgttttg ctttttaaac aaaatgagtt tgatgcaact ttgtttttta atatcataga
    23401 aaaacaatgc tcccaaaata tgcgcgtgaa ttcttttagt gaattgaaaa aagaattaaa
    23461 aaaagaagct tatcgtttga tattgcttga ttatgaattg attaaatttg atcttgagca
    23521 gatgcgttct attcttagcg cttataaaaa gcaacaccct caaagtcata ttatattctt
    23581 ttctagggag agggtgaggg attttgattg cgtaagcgag gttttaaatg atatcagcag
    23641 aaatgatctt atagctttga ttagaaaata tttgcctaaa aattaggctt tatagaattt
    23701 aactcctgct agattaagaa tctttatttt ttcttctttt ataagcttgt ctaaaagaag
    23761 ttgagaagtt ttatctaatt tattttctat atctatctca ctttgtgagc gtagatgaag
    23821 catttttagc aattcttctt cattaaaatt taacttttca ccctcatagt gtcttttggg
    23881 caaaagcacg ggagtggaag ttatgagttt ggaaagttcc aaaagtcttt cttcgcttat
    23941 ttttttaacc gcataagctg ggggtctatc aatggtgctt aaatcaactc ttaagggcgc
    24001 tattttagct aaagcttgat ttaaagcgat aaattcttct tcattgtcat taagatcttt
    24061 tacgacaagg atctccatta caagatcacc tttaaattgg gttttaaatt ctgccatttt
    24121 ttctatcatt ttttctaagt taatattttt taaagcccta tcaatacggt aaaaggtttt
    24181 agaaatagca ctgtctaggc taaatttaac cacatctaac tttaataagg tattgaattt
    24241 gtcttgatct aaaaccacgg tgccattgct taaaatgagc aattttttat ctttagcaat
    24301 cttgcgtaag gatgagatca attcatctaa atgaggataa aggcttggtt ccccattggc
    24361 tgttaaggta agaaagtcaa atgggacatt tttttcaaga gcgccttgaa cttctaaaat
    24421 gatttcttct acgcttacaa tctcatcttg tttttcttga ggtttttgag cctcaagttc
    24481 gcaatatacg caatcaaaat tgcattgttt cttgctaggg cttagatcaa tacctaaaga
    24541 tcttccaaaa cgtcttgaat tgatggggcc aaagagaatt ttcatttggc tgaactttct
    24601 tgcacaagct ggataaagta ttttgcattt tcaacaggaa tgtcaggcaa gattccatga
    24661 cctagattga aaatatgagc tttattttgc ataatttcaa gaatattttc tacgccttgt
    24721 ttgatagctt ttttatcata aagtctgcaa ggttccatat tgccttgtag ggtgtattgg
    24781 tgggataatt tatcgcgtgc taaatcaaga ggagtactcc aatcaactcc aaaaacatca
    24841 aaatttccat cgattttatc caaatagcca ctaatgcctt taggaaataa aattacaggt
    24901 atgtgagggt atttgttttt aataaaatca gaaatttcaa gcatatactt aaatgaaaaa
    24961 tcaaagaatt tatcacattc taaagcactc gcccagctat caaaaatttg caccgcattt
    25021 gcacctgctt tgatttgttc ttctaagtaa gattttaaaa cttgagtgag tttatttaaa
    25081 atttcatgca aaagttctgg attttgataa agcatttttt tacattttgc ataattttta
    25141 cttccgcttc cttctatcat ataagttgct atagtccaag gactgccaca aaatcctatc
    25201 aaagctttat caagcggtaa tttttcgcgt gttagtttta aagcatcata aacatagttt
    25261 agttttttat aagcattttg atcatctagc ttgttaaggt cttctaaggt tgaaataggt
    25321 gtttgaaata ccggtccttc gcctttttca aagcgtaaat tcattcccat ttcaagaggg
    25381 actactaaaa tgtctgaaaa gataatcgcc gcatcaactc ctaaaatatc aacaggttgt
    25441 aaagaaacct ccgaagctct tttgtagtct ttacataagg ataaaaaatc tcccgcttct
    25501 tgtctaactt tcatatattc aggcaaatat cttcctgctt gacgcatcat ccaaacgggt
    25561 gtatagggtg taggtttttt aaagcaagcg tcgataaaaa tcataatttt cctttgtttt
    25621 tttcataaaa ttataacaga aattaataaa aataaatgtg ttttgttgta tgaaagattt
    25681 gtgattgtct tattttggtg ttttataaat ttatacgaga attgaaaaat tctcgcaatg
    25741 aaattttaaa tttatatttt agcagtattt cccgcatcaa tggttgcaaa aagtttattg
    25801 agtaaatctt cttcattttt tttgtattga tcttctctca ttttttgcca agcataagat
    25861 ttaaaatctt ctttaacagc actaagatca agatcttcat tagtaaattc acttgaactt
    25921 gtctttttgt cttctttttc ttctttgttt ttaacttcat ttagagtagc ttgaaattca
    25981 tctgctgaag tgcttttttc cttaaccttg gttgtagcac taaacataga gcttgaagtt
    26041 gttcggatat cttttaccac cattttctcc tccttttgtt tttttgattt taaattagat
    26101 aagcaatttt tattccaatt tagaaatttt ggataatttt ttagaaaatt tttgatcatt
    26161 tatcaaaaag taaaaggagt tttcacagtt ttgttaattt gtttgaaata aatctgtatt
    26221 gtgatggtta aaaatttgta ttttgatttt tttaaaaaaa ttaaaaatat ttttattaca
    26281 ataaaacaaa aaataaggag aggcaatgaa gataatttta ctaacaattt taagttttct
    26341 tagcttatgg ggcttgagtt ttgatgagct tatatataaa aatgaagtta gagcgagttt
    26401 tgattgttct aaggttaaaa ataatggcaa aaatgatgat gagttaatca tatgcaataa
    26461 aataggcgct attaatgaat ttgaaaataa aaaacttgct ttgatggata atatctttat
    26521 aagtttatat caagagcttt taaaaaatgc aaatgaaaat ataaaagaag attttaaatt
    26581 ggttgtgaaa aaaatgttta gagaaagaaa aaattgtgcc aaagttatat caaacgatct
    26641 tttgcaagca gatcaagatc ctcaatcgcc ttttgtttac aagactgatt gtatagaaaa
    26701 aacttatgct aaagtatttt tagagcttat gcaaaaagct aaaaaagata ctcaaagcaa
    26761 agaaagatta aagcaaattt ttaataatca agcagataga tatgaaaatt taatccaaat
    26821 gagcattcaa gatcctatag atttggaaat ttttatagac aatctagccc aagagggctt
    26881 gatcgatgat aatgctagat tgaagcttta gaaggcaatt ctaaagcaaa tttagctgct
    26941 tcaaaatagc ttttagtact gattttggca tttttatagg ccttatcaaa ggcggtgcca
    27001 tgatcaacac ttacgcgtat aatgggcaaa tttaaactca cattgatact tttttcaaaa
    27061 tacaaagcct ttaggggtgc taagccaaga tcgtgataca tggctattaa gcgattgcat
    27121 gcttttaaat ttgattttgt aaaagctgta tctgcgacta aagggtaggg caaataaaca
    27181 ccttttgtat taaaatttaa aagcaattct ttttgtaatt tttcatcttt tagagctttt
    27241 ttaaagaatt tttcatcttt tttagaattt aaaaaagcat taacaaaagt gatagccttt
    27301 tgcataagct cttcttcttt gcctcctatc accccataat ctcctgcatg tgggttaaaa
    27361 cctaaaagtc cgattttttt aaagcgagtt tcttgataaa agtcttttaa aaaaatactt
    27421 aaattttgaa aagtgatttt tttgcttact tttgctaagg gtatgtgctc gctaaaaagt
    27481 cctacaaaaa gttctttaca tcctagcatc atgatggcat tttttttaaa aaagaatctt
    27541 agtgcatcag tatgtccttt aaatttaagc cccgcatcct cccaagcttt tttatgtata
    27601 ggtagagtaa gtagggtgtg tgcgtggttt ttataaacaa aatagcttgc cgccttaaag
    27661 cttaagaagc tatataggcc actttttgca tctatttctc ctgctttaat gtcaaagttt
    27721 tcatccactt ttaaatttaa aggcaagcca aaagaataaa tttcaagaga attatgcttt
    27781 ttaagcagtg taaattcata atttttagca tctttaaaag ctacgatttt tgcatttaaa
    27841 agctctaaat ttaaaagttt taaagctttt tgaagcaagc tttcatggat aaaataataa
    27901 ggagtgcaaa tttggcttaa tttttcatgt gagcgtgcta gaatttcaag ccctatgcca
    27961 ttgatatcgc ctatgctaat ggctaatttt ttcatcttta aagcagtgct ttcatttcta
    28021 aaatcgcatt ttgtagtcct acaaaaaccg atcttgctac aatactttgg ccgatattaa
    28081 gttcgcaaat ttctttgata tttgctattt gacttacatt tttataattt agcccatgcc
    28141 cagcagcgac ttttaatcca agctccactc cttttttagc acaaatttct atattgttta
    28201 actcctcttc aaatttactt tgtaatgttt ttttacttaa atcaaattct tttaaagcaa
    28261 aggctgtatg agagatattg ctaaaaagtg cgttatgcaa atttgcataa tgtcctgtgt
    28321 gaagttctat aaaatcagct tttaattcat atgatttttg tatatcttct aagctaggat
    28381 tgataaaaag tgaaacctcg atttgcgcat tttgaagttt ttctatactt tttttgattt
    28441 tattatgatt taaatttagc cccccttctg tggtaagctc ttctcttttt tcaggcacta
    28501 gggtgatacg ataaggtttt aatttaagtg ctaagtttag aatttcatca tttaaagcac
    28561 attctaaatt gataggactt ttgcaaaagc gtatgatatt ttctaaatca aaatcttgag
    28621 catgacggcg atcttctctt acatgcaaag tgatttgatc tccaaattta gcagctataa
    28681 aagcggcttc taaaagatca ggatcattta ccattctagc ttgtcttaat actgcaatgt
    28741 ggtcgatatt tacacctaaa agcatatttt tcctttagaa cttttttgct attatactat
    28801 aaatttaaat aaggatagtg atgttaggta tagatcttgg ctcaaatact ttaagagcgg
    28861 tttttataaa tgaaaaattt gaaaaattgg atgaatatga atttatcata ggttcggcta
    28921 aaaacttaga taaaactgga aagataagtg atgaagccat agaaaaactt cgcaatgcac
    28981 ttcaagaaat agctaaaaaa tatgacttaa gccaagcaag agcagtcgca actgcagctt
    29041 ttagaaaagc aagcaatacg aatgaaattt ttactcgttt aaaacaggaa tttcaaattg
    29101 attttaaagt gatagatgcc aaaattgaag ctaaaatcag cgttttgggt atgaaaaggg
    29161 ggcttttaaa tttaggctta aatttggatt gtgggtattg tgatttaggg ggcgcatctt
    29221 gtgaattttc ttttagggat aattttcaaa gttttgattt tggtattatc agtttttatg
    29281 aaaaatgcaa gataaaaaaa atcgcaaatt ctttttcttt taaaaaaata cttcaaaaat
    29341 atcctaattt tccttataga tttaaagata aaaagctaaa aattcatttt ttaattcacg
    29401 ataatttttt aaaaaccatg gcttttgagg cctttgggca aagcaatggt ttaaaaaaag
    29461 cattaaaaca aagcaagatg aaaaatatcg ttttaaattc aggtgtccct acggctttag
    29521 cggctttaaa aaaaggctta aattatgaaa aatacgaggc aaagaaaatc aatggtgcaa
    29581 gattaaatat caatgatttt ttaacttttg ggcaaaaact ttggtatatg gatgaaaaaa
    29641 aggcaagttt ttgggtagga aatacgcgaa aaaattattt agttgcggga tgttttttgc
    29701 tttttagtat ttttgaaaga gaaaaactta tagtgattga tgagggttta agggaggggc
    29761 tttgtatggc tgatttaaat ttaaaagatt accaatgaaa attaccatag caattatttt
    29821 ttactttatt taccctaatc tttttaagta catgtgcttt taaagaaaaa aagcaagtga
    29881 aatagaaact cttgcaagta attatggtgg aatttatatc tttgataaaa aaataagaga
    29941 agagatattg gaattagaaa aaagaagaat ttcgtagtaa gtatttgggt agtgaaatta
    30001 aagtaggaaa tgaaactcat tttgtgaatt tttcttattt g
//
LOCUS       DARAII010000007        27839 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.007, whole genome shotgun sequence.
ACCESSION   DARAII010000007 DARAII010000000
VERSION     DARAII010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27839)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27839)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27839
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.007"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(297..1031)
                     /locus_tag="SB143_000263"
     CDS             complement(297..1031)
                     /locus_tag="SB143_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S24 family peptidase"
                     /protein_id="HEF9748836.1"
                     /translation="MGRNGDIFDFHFDTEKFKFYLKNRDKKVTYQDLMEILYKNGIES
                     SEATIKKWLMSKEDNKTKPKPQYIKILCNALDIPFNEVILQDVFRNDNQINFRYFPDI
                     YASAGLGTSSQSEEAKIVSVDENFLKEILDIPIKKSYDIIKINGDSMEPILSNGDFII
                     IDRSKNSLGAISNADIVIFRKNDDLFCKKIKKEPFADYIFLVSENKKYEDKKVDNSEF
                     EQCEILGAVVSKMAVETFKNFIEVVG"
     gene            1143..1361
                     /locus_tag="SB143_000264"
     CDS             1143..1361
                     /locus_tag="SB143_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748837.1"
                     /translation="MKKIDFFDFTKILSNHYTVISVKKIRTNKSRPSFKKQIEFKKLY
                     GIPHEFWVDVRSNLTNIPKRGRKRKDRE"
     gene            1370..1558
                     /locus_tag="SB143_000265"
     CDS             1370..1558
                     /locus_tag="SB143_000265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748838.1"
                     /translation="MKRVRIEIDISDETYEIMLKLMKKRKYEKVEDLLFAYMGTMYKM
                     ELAGALLENDKNLSLIKT"
     gene            complement(1555..1704)
                     /locus_tag="SB143_000266"
     CDS             complement(1555..1704)
                     /locus_tag="SB143_000266"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748839.1"
                     /translation="MDDKDLNLLKNIPYLMEKIEELENRIKQLEQAAQPKPYSTQTPN
                     YLGEI"
     gene            complement(1840..2205)
                     /locus_tag="SB143_000267"
     CDS             complement(1840..2205)
                     /locus_tag="SB143_000267"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748840.1"
                     /translation="MFNSFLSEMLKTATLENLVYFLIGVLFGLSIRPLFLYLTKKQKL
                     KRVCIKDMKLENDLTKRLYPNLGYKLVTKKTPFEMVFKKDKFKYIICPYYRDKKCVLD
                     NDKCKILKSQPKYQPLETV"
     gene            2248..3249
                     /locus_tag="SB143_000268"
     CDS             2248..3249
                     /locus_tag="SB143_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748841.1"
                     /translation="MIPSFIASFDVAIGRKRLRERKGYLKLSNTIAYGGLSVDALALY
                     IQLAKLSEKTIVSEIYLREFIKVKNNQRMSLNRLRIAKKELIELRLLEIKKVRNGSLN
                     FYEWILKDENYQVKKHFNKSLSLLKNSDEKLSKTLKNNASSIDRKLTTENEKNQNSLY
                     IETRTHARDNKFINNININNNKFIKKENLENLKNNQEKKERVFNQNASFAVSFLKLDE
                     KECEKMAKKEFKVPNANELMGQIMAFNEKNNTNFGEELANDFIGYWDAREWKRNGKRM
                     SSIAGSLYTWLKYAKENELRKNQRFGRKKEANPSVVDSLMEYYGMKDENKDKLLGCF"
     gene            3260..3907
                     /locus_tag="SB143_000269"
     CDS             3260..3907
                     /locus_tag="SB143_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748842.1"
                     /translation="MQEKIQILIDLLEINKAQATDIVGRYLKNAKDIHSFLDFYFETL
                     ERENIVGTTYEKLRMVCKKAEIEFKKRFEDKEIFLEWLCNKYKNQACFRLHEGDFEYS
                     YFASCGNGKKIKINQKSIDILVCVNAFKQISYKNGEPLENNEFKEALLEFIFKNQDRI
                     GKNLNIPLSVKKIEKVLSLEEKREIEKIEETKLFNENKDRFEIFIKSKKAFKKIS"
     gene            3925..4305
                     /locus_tag="SB143_000270"
     CDS             3925..4305
                     /locus_tag="SB143_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748843.1"
                     /translation="MEKYFLKIDLKSNPVPYKRTTQRSKFACKDYLKYLDFKKLLQME
                     FRRQNNISCFQAFDKQKKYEFSLKIGFNSKRHGDGDNIVKCVLDALFENDKNVLKGDY
                     EIISFKKSFLDLEIKEFNFKEGVA"
     gene            4305..4691
                     /locus_tag="SB143_000271"
     CDS             4305..4691
                     /locus_tag="SB143_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748844.1"
                     /translation="MARMMTNGKSMTKEELVSKIENYFSEKTVLKETKESVIFAPKTK
                     VGLAVHLGISMQTLNEWEKDKDFGEIVSQAKQKCEMDILNHSLIGTYTPSVSMFLLKN
                     QHGYVDKQEILSDNVQKIEIIRSEIK"
     gene            4688..5980
                     /locus_tag="SB143_000272"
     CDS             4688..5980
                     /locus_tag="SB143_000272"
                     /inference="COORDINATES: protein motif:HMM:NF015211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase family protein"
                     /protein_id="HEF9748845.1"
                     /translation="MKLKLDFSYTPAQLKVFDDKNPRFITVAKGRRLGFTRGSAKFVI
                     ENLLLGQNVLWVDTIQANLQNYYELYFTPELKNLPKDFYSWSVQDKKLIINGAVLHMR
                     SAERSENIEGFAYDLVILNEAGIILKGSKGQYLWYNAIRPMLLDNPKSRAIIGGVPKG
                     KNLFYELCRKELSDKNWKHFQFSSYDNPFLKEEQIKELIEEVGGEDSEVVKQEIYGEF
                     IDSGGAELFALTEIENAMSKNSFSIEKMQGENIWGLDVARYGDDKSVLAKRKGFVVDE
                     IKKYSQLGTMELANKILAEYNQSEDKPKGIFIDTCGLGVGVYDVLLNYGLPVFEANSA
                     NSATSNEYLNKRAQMYFTFAKNLKHMELVKDEELKKDMRMIEYEYSDKGLLKIVSKEQ
                     LKKNYGKSPDVSDAVALTFFEKLYSRNNTNEDWSYDGW"
     gene            5970..6242
                     /locus_tag="SB143_000273"
     CDS             5970..6242
                     /locus_tag="SB143_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748846.1"
                     /translation="MAGEFLMIYDAIDVNKIKKLSNLSDEAIKSSLANEFLELVSGFN
                     NISKKKFKREFAEFLFEKGVNEKDILKITNLSKTTIWRIMNENKKN"
     gene            6223..7761
                     /locus_tag="SB143_000274"
     CDS             6223..7761
                     /locus_tag="SB143_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748847.1"
                     /translation="MKTKRTNDERVSFLTQLIRESKSGYENYKPHFKELQDAYLLENK
                     VMQKLRKRNKSSIYIPKINSKVKYLITSLNEVYFNSERMADIETYINSDDTIIELWQN
                     AIDFYSGKINMFKIFQPLFLDVLLVGTSIAKLTWHKGMPRIERVDIDSIFFDPNALNS
                     EDIGYIVNEIYLTYNQIHERQKLGFYKKIEIEKLFDEDDEYKKVKLYDIYERKNDDEW
                     VVSTLFENNLLRNEVTLQDGQPFIWGSMLPQLKKIDNENYISAYGEPIMASAMPLQDE
                     INITRNLLIDAVRSHIMPKIMMPKSMGVSREDIETLGKPIYTDDPKGIQILPPPNINS
                     SGINLQLLESELTEVTGISPQNNGAQTAQNETATEISIKAQEGGRRSADYIRQYNETF
                     IEPLFDRFAMLVFKYGEDSFFNGFQREDIPSFRFKIQTGTGAMNKEVRRAGIQASMQV
                     FSQLYQMYMSIGDANSAYGIINASKELTKELLPILGVKNVNTLFAFENNEDINPQMQG
                     ETNA"
     gene            7754..7957
                     /locus_tag="SB143_000275"
     CDS             7754..7957
                     /locus_tag="SB143_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748848.1"
                     /translation="MLNIEIKSDISKTKGGKNLIEFIKAKYSECFYIAKNNDEKELRL
                     KALDTMAFLDIIINKIKDEEDGK"
     gene            7947..8594
                     /locus_tag="SB143_000276"
     CDS             7947..8594
                     /locus_tag="SB143_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748849.1"
                     /translation="MENDALKDLINVITDDDKGDVANNGDEPTQVEDNESMQVANENE
                     PDYKAMFEAYKSENDNKLNALMSELEALKNPKKEPSEQELQREQYLKELGLDGLDEKL
                     KRLEELDKKQKDKEEQDALIAKYAQVESELRKAYPDADLKAMAELATKLNGLGEGNID
                     SWKTLLNLVGKSNNAKKAEDLSSANNNVRTSDFNDKLKKGEVSEIDLGKELLSLV"
     gene            8605..8985
                     /locus_tag="SB143_000277"
     CDS             8605..8985
                     /locus_tag="SB143_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748850.1"
                     /translation="MDFITALKGGTGLGSSFADTLMKTSNFTPNLASSSGGFLNGLKN
                     SFSNFGDWLFKSSDTNKITNFDRLGNVLGAGGALYGAYNQQKMAQKNYELQKDAYNFN
                     KFLANEELNRRKNMENKLQNVWSN"
     gene            9242..9505
                     /locus_tag="SB143_000278"
                     /pseudo
     CDS             9242..9505
                     /locus_tag="SB143_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049716.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            10298..13603
                     /locus_tag="SB143_000279"
     CDS             10298..13603
                     /locus_tag="SB143_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748851.1"
                     /translation="MTIQIPQGAKTMQLFDMNIDIPEGKTYIDIDDNFLQNKYNQFIQ
                     NNQQQNNFNSQEELALDGKPMSMYQAPQVSQNEPQEQGVWSKINKGLEDFNNLIDPKR
                     MISEGLDYLSPKVTSGEEGARQKIEDATNQVSGGLLPRIFTSPSNEEQKQIFQIAYDE
                     IKKLGYEPFLEINNGDYKYIGVDKNGKEVDFTPSFRNTLASTKNELAFSVAGGYAGSL
                     AKTAGQTIAKKALNYFAPSAIGAGSGAMADLHSQSNNTGIEASYMDYAKRFGSAAAED
                     ALAGAVVGSAIKGIGKTYKSVGDLISSVKTGARAGKDMIDGMAVKGGNLGNRVIDKIT
                     QKDIPMIGKFTDGGLQNAETIFNNLTKNVENKKQIDELIAKENPTYLENGKPTIEILK
                     NIVEQGLNKNNPQFIQDSAKRTSAILKNISNTLQGVPTTQRREILLKSAQAYPEIGSF
                     LDDVLKADKDASISFLNIIKEQDEVFKNKTGLNGEFDVKAWQKDNSSYKKRINNEYAQ
                     AIKSIDELNNGSIRLSKEGLAKIEEFKNNNFLEQDIKTNISSFLEDAIDKDLSAEQIF
                     NLRSAINKQLATGNKTYNTKEAYRLVKDTLDETMIKNASDKELAKKILEDANKNYALK
                     ENFNNSYLGKIKDQETPEALAQRIANGARNINEDKDLKRAFEGMNEAERKANEKHAFN
                     ALLAKHRIEDIGYDFKNLAKDMDNVEFVSKDLKYAKEVVNVYAKIYQNNKDLIMTALA
                     SSGKNTNSSIATTIQGVFDRILISGVFARIHALVPFMKSAKEQALRNQILDALKLAKT
                     NKEVISNLKNIKIADKEQSRIFKDALDNYIKVDKEQNKILKDALIKEGVIKGDNFFMD
                     KADPSKAKSDYTAKFNVEKWINNVSGILKDEWVVNLKAMAKKHPEMFKNEADVFKVIK
                     EIKDNPTHFFKNYDDEVALIAKPLKDDKVGNIAIKKDSGKIIHINKTKGKDLERLNRR
                     NKAMLTGTPTPATTKGSTTNVEGDLLQHSFKNSTQTKPKKNLMEDIKENIEAKEVEKK
                     NKKSVKQSLDEKIQNDKKASEERIKKIKQVIARKQKIDKVTDKKNNREIAGKIGTYTL
                     KNLIKLKERSEDK"
     gene            complement(13697..14143)
                     /locus_tag="SB143_000280"
     CDS             complement(13697..14143)
                     /locus_tag="SB143_000280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748852.1"
                     /translation="MKKSQKQKTPNTIKQENQNKENPSQTFNTQLNFLMENELNAIGK
                     LPKDLADRIVTMLEKSLEYKKDNDNKILDLENKNIEIRKKDIKSYHFWNGFGMVSFLL
                     ITITSICVGLYLILNGHNEGAYFAFILGALTLLPKIIDSIKNKPKN"
     gene            complement(14112..14288)
                     /locus_tag="SB143_000281"
     CDS             complement(14112..14288)
                     /locus_tag="SB143_000281"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748853.1"
                     /translation="MTKTQAFIDGFVGKPIKNECFNLWDLNAIIREKQAKLYKENIEF
                     REKQIEKITKTKNT"
     gene            complement(14300..14467)
                     /locus_tag="SB143_000282"
     CDS             complement(14300..14467)
                     /locus_tag="SB143_000282"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748854.1"
                     /translation="MKNEIVKDNKEIETFEKVGKVMAEIEVSKQKATLAQIEATREDN
                     QRQFEKITKQK"
     gene            complement(14457..14666)
                     /locus_tag="SB143_000283"
     CDS             complement(14457..14666)
                     /locus_tag="SB143_000283"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748855.1"
                     /translation="MSSILNAYNEAKILQEQKPNNAVVISYLNYKGYYPKIQNTDLLI
                     IQGALKAIQQNNTNFEDNVKLKYEK"
     gene            15077..16111
                     /locus_tag="SB143_000284"
     CDS             15077..16111
                     /locus_tag="SB143_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5309 family protein"
                     /protein_id="HEF9748856.1"
                     /translation="MALPSMGHTAPATENVKLKQSIYETIIKIGATETPILNKIGTSK
                     VTNPLTHSWLTDTFEEPKKNANLELSKFVGETKNTAQKTTNATQIFITEAMVSKALLK
                     ANQYGGNEMEYQIGKKTKEHKMDMEYALFGLGRDNDVKKSVFKDYVQAQEATSGEMAG
                     LFHYIAKGKDSFADAKRGNVLAFDETGDWSGTATELTEDKLNQILQTIWNSGVTPKDV
                     FLGADLKGAINKFATRILGNETKLAGQVVSLETDFGTVNFHMHRLLSPKYGLGDVLIA
                     GDFEYMKHGLYIPTMIEDVPTDITAKAKRFYTQSTLEVRNADAFAIGVGLTSGNNAKA
                     KAVLKAARGA"
     gene            16111..16515
                     /locus_tag="SB143_000285"
     CDS             16111..16515
                     /locus_tag="SB143_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002796938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748857.1"
                     /translation="MLCIMAKKLIIAKVKNSYKMIEDDEVLKAYFMEAFYYILSKCVP
                     SVLLKNVEQSEKVFRQVRNNHFLIIPDEPDFDNEKEHLMIDEALSFAVINYVCYLITR
                     CEEKDFLALCDKIINEYIANDGKELDDERTWL"
     gene            16496..16690
                     /locus_tag="SB143_000286"
     CDS             16496..16690
                     /locus_tag="SB143_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748858.1"
                     /translation="MKEHGCECNFTNKFNRALSYKDYAQSINSADFIAYLDDKKWLLA
                     MDDLLFFCEKRIKDSDYYEG"
     gene            16693..18354
                     /locus_tag="SB143_000287"
     CDS             16693..18354
                     /locus_tag="SB143_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748859.1"
                     /translation="MGTSLNELKTGREKLEIINQVLARISNVATALDNTRIEEIVGLK
                     EQVNNFYNQILELKNLVVKNSELTQSNTDFTKNKRNEIEKISNEIKNTLNNIEEIYNN
                     IIKSEKDISNGVNFVKDKYPELNEFNKNFEIIKIKLEEYYNIAVDFNAGLKKIEENKN
                     LTKSYLDLSIELKQQILQELEHAQSIKEDLHSNIELVNKLVSNIVATKNEIISITNNF
                     KNVKSEVQNIVNDAEATIKLKINTILFENQRLNQNMINLLKRCEKLEDEIVGKYEDIL
                     KIEDLINSSTEIINDLREAVKQSEQISEDMRSFTAIINDFKTEISNLKADLESYGERL
                     KGQLDLKLAQANSSVDAKISSIETLKNQIEAYVEANKNTVDVALANFIERSKIANEDL
                     GRLAEVARTELANDKTAIESYLLELKQSMVNAMKKVSSDITDETSGILAQKNQIELII
                     TQGKSDLDTLINNFNSNYQNKLNEFNSNTNEKLASINSLSEESITNIQNKTDENISRL
                     DTASEEKLTKLDEIIKDNLGGIYSHIFSIENVLFDKKIIKLTYKE"
     gene            18358..19509
                     /locus_tag="SB143_000288"
     CDS             18358..19509
                     /locus_tag="SB143_000288"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748860.1"
                     /translation="MADLEQVVNDLNLASQSLQELREKYDGALDLLDNKNTQITGALD
                     SAKSNALQEIQTISHTATSQISQLKNTSLNLVNEAKNTAIEEVNNAVSGIDTSKEEAL
                     LAIEQAKAAQEEKITDLEQAKENIITELSEKAKLLTQSLEWTVGEGGKFTNLKDALSE
                     ALKYNKSNIITIKLKSGFVFNEKIVFSNANFNNVIISSEDDIVKVNPNNAVFSDTSVS
                     YLFLSNYGITPIINIKVDLNPLENSNSTKKIVFLGLYQNSRGFISPNKGCMNAVWDAI
                     MVEQASTLLANACVVENSGYDGVFCSQGSIVNISNATIKGTARYGILARQGGYICANS
                     ANLIEQTQGTLLQCEGGIIHANGLVTTGSTTTETNITPNQPASFGIIFK"
     gene            19519..20178
                     /locus_tag="SB143_000289"
     CDS             19519..20178
                     /locus_tag="SB143_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748861.1"
                     /translation="MIVIKNNGSILENLNKEIIKDVIAKNSILAIVNNRALSYKENRV
                     EIEGIDDYIENIYQDDITPEEIQAGTQAVKEYCLENNELELLKQYLPLVLSGAELLTE
                     MKAVKLIEINKDYEKAILKVQKDYIPQSEMLSFETQERESLAYKNSKYKDTSLCPFMQ
                     AIATARGIDLRTLCDKALEKATLYRQASGALIGKRQCLQDRIELVQSLEDLNLIAWES
                     E"
     gene            20175..20555
                     /locus_tag="SB143_000290"
     CDS             20175..20555
                     /locus_tag="SB143_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748862.1"
                     /translation="MSTENIIKEGAILGSLSGSALLGLMVFVLAGIAWHLYKTLHKEA
                     GEKTKELISETKNTNVLIREQIAISKASNDSLIKFIQTHCSKTNDKLEAIETDLMRMD
                     ERLVKLTQIRNDELRMIYKRKENE"
     gene            20552..21025
                     /locus_tag="SB143_000291"
     CDS             20552..21025
                     /locus_tag="SB143_000291"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748863.1"
                     /translation="MKIAFYKVKENDKSTFLDKAIAFFTSSWKERLNGDFLKSYSHCE
                     IILDNLMISSSPRDKGVRIKEFKDSGRWDFIEINDINETKIKEFLYSQIGKKYDFLGI
                     LGFFTFTKDSEDKWFCSEIIIRALQIGGLVKLGDMNAGSSSPNKLYKKLKDTNEN"
     gene            21015..21476
                     /locus_tag="SB143_000292"
     CDS             21015..21476
                     /locus_tag="SB143_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748864.1"
                     /translation="MKIKIIRRYTGKTCVIGKFKVLDDDDKLLLECFSLEEDKEGLQS
                     GKDLRIPEGNYNLRRHTPSRFENTLRSITKKDDDTMINVYNDEVPASRAILIHWGNTD
                     KDTQGCILLGLTKDNNNESIGQSRQACKEFYDLVYGKNLEDIKLEITNELA"
     gene            21709..22092
                     /locus_tag="SB143_000293"
     CDS             21709..22092
                     /locus_tag="SB143_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748865.1"
                     /translation="MINLLFGNAKLYIALVSMAILAGYFYLRLDSTKAKLEKSRSDLA
                     LALKVNENNQEKLKELNQIHKTELKALNEANNQKNQVQERVQYVKEYIYKSNENNITK
                     LFNNVVDRLWDANRASGNQNRNSKS"
     gene            22046..22243
                     /locus_tag="SB143_000294"
     CDS             22046..22243
                     /locus_tag="SB143_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748866.1"
                     /translation="MQTGQVVTKIEIQKVRIPQELLTLSPLEKPKAKNELDILNAYSM
                     LFYKYKQCEIQISKIKELNNE"
     gene            22236..22862
                     /locus_tag="SB143_000295"
     CDS             22236..22862
                     /locus_tag="SB143_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748867.1"
                     /translation="MSNTNVDYNKRLEVFKEIYPQILEMSLAEKSPFGEFKKLLEQFG
                     NDNIIRNDTQFQSLAQALVSVGQTIVAQSQNTALQMILGGDENIVNQANINLTNARIE
                     TEKANANLVKRQTAQIDDELELKEQSVNIDKSLSIEKEKLLQAQTETEKANANLVKRQ
                     TAQIDDNLRIEAAKVTQSVQFGYCTGGLDIPQEIMKLVKEKIENIEKF"
     gene            22865..24595
                     /locus_tag="SB143_000296"
     CDS             22865..24595
                     /locus_tag="SB143_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748868.1"
                     /translation="MLIDEKRLMRNYTLKPAYPSNIGELDTGEVYKQWFTYAMIGVNK
                     YVELLHKQLIRKGRSYSQNATHPLYPNSYIVKKYNIKSASTAPYDKHSHGNLGLNQFF
                     VGQDPYKPYKGDPSSKNGIYHDICEIRTKYNLGNMQYYYGFPNNLTLLFEKEKAWKYH
                     GKGFFYIDEKINFKDILNKALENINYEMLINDIEVVIFSQTIQKNNEWIYPSIDDIKI
                     PNIKVENIEFKPLFGKPYKKLCIDVEKFYNDFKELNKNIFRIEKVEITYKIYEKAQKT
                     RESDSGKTYYALTSKKVSFFEVFNSIKENYKCKYALPLCFYNSFNFVCYEEPYVAFSS
                     LNNASWGKKDTSVTPSIYPLYRKSSNLPYGRRDRWFALWDSFYYLYVYEKSSKGVLSF
                     LAPIVTIVLAVATWWIGGQGAWLGTLIGVSETIASGITLGISLGLAIGSLTGNKTFSI
                     LNAVWGLVNFLGAWGANNWNLAADFTKNTAQIAQEMTTFESTLNIAGNLLSGASKIFD
                     VVQSITANTPDMINEQKGSDLDNNEGGNGSEALELAKDMINPTIWYNFETTDILNEKI
                     EKNRNLIFAF"
     gene            25124..25540
                     /locus_tag="SB143_000297"
     CDS             25124..25540
                     /locus_tag="SB143_000297"
                     /inference="COORDINATES: protein motif:HMM:NF019313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748869.1"
                     /translation="MENNQNKQEKLESVNIDKPIEKKEEDLFSRNSVAEQLNTIIKNY
                     KEEDSITFGIIGDWGSGKTSFVNMTLEDFKDDENFIIVKFNPWNISTRKKLISDFFTT
                     LAKEIRKASFPKFKIKNLKKYILMQNLNFYLKYLIN"
     gene            25576..26477
                     /locus_tag="SB143_000298"
                     /pseudo
     CDS             25576..26477
                     /locus_tag="SB143_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790564.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NTPase"
     gene            27091..>27839
                     /gene="cmoB"
                     /locus_tag="SB143_000299"
     CDS             27091..>27839
                     /gene="cmoB"
                     /locus_tag="SB143_000299"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEF9748870.1"
                     /translation="MQENPLEKQFLNHPLFSKIQNLKEVELDSKLYLEDSVTLKTNSQ
                     AKKEILELTKELKPWRKGPFKIDELFIDTEWQSFIKFNILKPFMSEISQKCVADIGCN
                     NGYYMFKMLEFNPKKLIGFDPSIKYRLQFELINTLAKTPIKYELLGVEDLPKYGLKFD
                     VIFCLGVIYHRSDPIKMLKDLKVGLNKNGTVFLDTMYIEDPREIALVPNKTYSKIPNI
                     YFVPSISALKNWCERAGFKDFEVLATKTTDE"
BASE COUNT        11411 a         3346 c         4548 g         8534 t
ORIGIN      
        1 aatagcataa ccataactat ctggtatata atttatagta gtataaatta tataccttga
       61 acaaaattca gctacaagat atactccaaa aaaaactaat aagttatata ttttaacaat
      121 attaattctt ttggtaattt tatataaatc tataaatgct ggaataatca ataaaagata
      181 tcctataatt actataatca aattattaat tttaacactt aaaataagaa caaaaattcc
      241 tataatatat gacaatataa aaggattttt taaataggtt gttattttat ttaagctcat
      301 cccaccactt ctataaaatt tttaaaggtt tcaacagcca tttttgatac tacagcacct
      361 aagatctcgc attgttcaaa ttcgctatta tctacttttt tatcctcgta ttttttgttt
      421 tcagaaacta aaaaaatata atctgcaaaa ggttcttttt taattttttt acaaaataaa
      481 tcatcatttt ttctaaaaat aacaatatct gcatttgaaa tagccccaag tgaattttta
      541 cttctatcta taataataaa atctccatta gataaaatag gttccatgct atcgccatta
      601 atttttataa tatcataact cttctttatg ggtatatcta aaatttcttt tagaaaattt
      661 tcatcaacgg aaacaatttt tgcttcttcg ctttgagatg atgttccaag tcctgcactt
      721 gcataaatat ctggaaaata tctgaaattt atttgattat catttctaaa aacatcttgc
      781 aatatcactt cgttgaaagg aatatccaat gcattacata aaatttttat atattgtggt
      841 ttaggttttg ttttattatc ttctttagac atcaaccatt tttttattgt tgcttctgag
      901 ctttctatgc catttttata taaaatttcc atcaaatctt gatatgtaac ttttttatct
      961 ctatttttta aataaaattt aaatttttca gtatcaaaat gaaaatcgaa tatatctcca
     1021 tttcttccca tattctctcc ttttttagta taaaaattat acactttttt caagcaaata
     1081 atgttccata attagaaaca taattaaata tttattaagt ttctttattt tatactttcg
     1141 ttatgaaaaa aatagatttt tttgatttta caaaaatatt gagtaatcac tatacggtta
     1201 ttagtgttaa aaagattaga acaaataaat cacgcccaag ctttaaaaaa caaatagagt
     1261 ttaaaaaact ctatggaata cctcatgaat tttgggtgga tgttcgtagt aatcttacaa
     1321 acatacctaa gcgtgggaga aaaagaaagg atagagaata aaaaaggcaa tgaaaagggt
     1381 taggattgaa attgatatta gcgatgaaac ctatgagata atgcttaagc ttatgaaaaa
     1441 aagaaaatat gaaaaagtag aagatttact ctttgcatat atgggaacta tgtataaaat
     1501 ggagcttgct ggtgctttgc ttgagaatga taaaaatcta agtcttatta agacttagat
     1561 ttctcctaag taatttggag tttgggtaga gtatggttta ggttgtgcag cttgttctag
     1621 ctgttttatc ctgttttcta actcttcgat tttttccata agataaggga tgttttttaa
     1681 caagtttaaa tctttgtcat ccattttgat aagtcctttc ttgattgggt gcaaaaaaat
     1741 tatagcaaag gactttttaa aacggattaa ggaatgaaat gcttgagaga ttgattgaga
     1801 ttataggatt atttattttt actttgatga tgttgcattt tagactgttt ctagtggctg
     1861 gtatttcggc tgggatttta atatcttgca tttatcatta tctaaaacgc attttttatc
     1921 acggtagtaa ggacaaataa tgtatttaaa tttatctttt ttaaaaacca tttcaaaagg
     1981 agtttttttt gtaactaatt tatatcctaa gttaggatat agtctttttg tcaaatcgtt
     2041 ttctagcttc atatctttaa tacaaactct ttttagtttt tgttttttag ttaaatataa
     2101 aaacaaagga cggatactta aaccaaataa aacacctatc aaaaaatata ctaaattttc
     2161 taaagtggcg gtttttagca tttcggataa gaaagaatta aacataaaaa acctttttaa
     2221 tttaaattat aacataaagg agagttgttg ataccaagtt ttatagcaag ctttgatgtg
     2281 gctatcgggc gaaaaagatt gagagagaga aaaggctatt tgaaattatc aaacactata
     2341 gcttatggtg gtcttagtgt tgatgcttta gcattgtata ttcaattagc aaagcttagt
     2401 gaaaaaacga ttgtaagtga aatctatcta agagagttta taaaagttaa aaataatcaa
     2461 agaatgagtt taaatagatt aagaattgca aaaaaagaat taatcgagct taggctttta
     2521 gaaattaaaa aggttagaaa tggatcttta aatttttatg agtggatttt aaaagatgaa
     2581 aattatcaag tcaaaaagca ttttaacaaa tctttatctt tgcttaaaaa cagtgatgaa
     2641 aagctaagca aaactcttaa aaataatgct tcatcaatcg acagaaaatt aaccactgaa
     2701 aacgaaaaaa atcaaaattc cctatatata gaaacacgca cgcacgcacg cgataataaa
     2761 tttataaata atataaatat taataataat aaatttataa aaaaagagaa tttagaaaat
     2821 ttaaaaaata atcaagaaaa gaaagaacgc gtttttaatc aaaacgcctc ttttgcagtg
     2881 agctttttaa aacttgatga aaaggaatgt gaaaaaatgg caaaaaaaga atttaaagtc
     2941 ccaaatgcta atgagcttat ggggcaaata atggctttta atgagaaaaa taatacaaac
     3001 tttggtgaag agttggctaa tgattttata gggtattggg atgctagaga gtggaaaaga
     3061 aatggaaaaa gaatgtcaag cattgcaggc agtctttata catggcttaa atatgctaaa
     3121 gaaaacgagc taagaaaaaa tcagcgtttt ggtagaaaaa aagaagccaa tcctagtgtg
     3181 gttgatagct tgatggagta ttacggaatg aaagatgaga acaaagacaa gctcttagga
     3241 tgcttttaag gagtaaaaaa tgcaagaaaa aatacaaatt ttaatagact tattggaaat
     3301 taataaggct caggcaactg atattgtagg tagatattta aaaaatgcaa aagatattca
     3361 ttctttttta gatttttatt tcgaaacttt agaaagagag aatatcgtag ggacaaccta
     3421 tgagaaatta agaatggttt gtaaaaaagc agagattgaa tttaaaaaac gctttgaaga
     3481 taaagaaata tttttagaat ggctttgcaa taaatataaa aaccaagctt gctttaggct
     3541 acatgaagga gattttgaat attcgtattt tgctagctgc ggaaatggta aaaagattaa
     3601 aattaaccaa aaatcaattg atatcttagt ttgcgtaaat gcttttaagc aaatctccta
     3661 taaaaatggc gaaccattag aaaacaatga atttaaagaa gctctacttg aatttatttt
     3721 caaaaatcaa gacagaatag gaaaaaattt gaatattcct ttgtcggtta aaaaaataga
     3781 gaaagtttta agcctagaag aaaaaagaga aatcgaaaag attgaagaaa caaaactttt
     3841 taatgaaaac aaagataggt ttgaaatttt tataaaaagc aaaaaagctt ttaaaaaaat
     3901 aagctaattt taagaaggcc tgaaatggaa aagtattttt taaaaattga tttaaaaagc
     3961 aacccagttc cttataaaag aacaactcaa agatctaaat ttgcatgtaa agattatctt
     4021 aaatatttag attttaaaaa actcttgcaa atggagttta gaagacaaaa taatattagc
     4081 tgttttcaag cctttgataa gcaaaaaaaa tatgagtttt ctttaaaaat aggatttaac
     4141 agcaaaaggc atggcgatgg ggacaatatc gtaaaatgcg tgttagatgc gttatttgaa
     4201 aacgataaga atgttttaaa aggcgattat gagattatta gttttaaaaa atctttttta
     4261 gacttagaaa tcaaagaatt taattttaaa gaaggggtgg cttgatggct agaatgatga
     4321 caaatggcaa aagtatgaca aaagaagagc ttgtttcaaa gatagaaaac tactttagtg
     4381 aaaaaactgt tttaaaagaa actaaagaaa gtgttatttt tgcacctaaa acaaaagtgg
     4441 gattagctgt gcatttaggg atttcaatgc aaactttaaa tgagtgggaa aaagataaag
     4501 attttggaga aattgtatct caagctaagc aaaaatgtga aatggatatt ttaaaccatt
     4561 ccttaatcgg tacttatact cctagcgtta gtatgttctt gctaaaaaat cagcacggtt
     4621 atgtagacaa acaagaaata ctcagcgata atgttcaaaa aatagaaatt ataagaagtg
     4681 aaatcaaatg aaattaaagc ttgacttttc ttacactcct gcacaactta aagtttttga
     4741 tgataaaaat ccacgcttta taaccgtagc aaaaggcaga agacttggtt ttacaagggg
     4801 aagcgctaag tttgtcatag aaaacttgct tttaggacaa aatgttttat gggtggatac
     4861 catacaagca aacttacaaa actattacga gctatatttt acacctgagt taaaaaactt
     4921 gccaaaagat ttttattctt ggagtgtgca agataagaaa ttaatcatta acggagcggt
     4981 acttcatatg agaagtgctg aaagaagcga aaatatcgaa ggttttgcat atgaccttgt
     5041 tattttaaac gaagcaggaa ttattttaaa aggcagcaaa ggacagtatc tttggtataa
     5101 cgccatacgc cctatgctac ttgataatcc taaatcaaga gcgattatag gtggagttcc
     5161 taaaggaaaa aatctatttt atgaactttg cagaaaagaa ctcagcgata aaaattggaa
     5221 acattttcaa ttctcaagtt atgataatcc atttttaaaa gaagagcaaa ttaaagaatt
     5281 aattgaagaa gtgggtggcg aagatagcga agtagtcaaa caagaaattt atggcgagtt
     5341 tatagatagc gggggtgcgg agctttttgc attaactgaa attgaaaatg cgatgagcaa
     5401 gaactctttt agtattgaaa aaatgcaagg tgagaatatt tgggggcttg atgtagcaag
     5461 atatggagat gataaaagtg ttttagcaaa aagaaaaggt tttgtagttg atgaaataaa
     5521 aaaatactca caacttggaa ccatggagtt agcaaataaa atattagctg aatataacca
     5581 aagcgaagac aaaccaaaag gtattttcat agatacttgc ggtcttggcg ttggcgtgta
     5641 tgatgtcttg ttaaattatg gcttgcccgt atttgaggca aattctgcaa attctgcaac
     5701 tagcaatgaa tacttaaata aaagagcgca gatgtatttt acctttgcga aaaacttaaa
     5761 acacatggag cttgttaaag atgaagaatt aaaaaaagat atgagaatga ttgagtatga
     5821 atatagcgac aaggggcttt taaagatagt ttcaaaagaa caattaaaaa agaactatgg
     5881 caaaagtcct gatgttagcg atgcggtggc tctaactttt tttgaaaaac tatacagcag
     5941 aaacaatact aatgaagatt ggagctatga tggctggtga gtttttaatg atttatgatg
     6001 caattgatgt aaacaaaata aaaaagcttt caaatttaag cgatgaggct ataaagtcaa
     6061 gtcttgcaaa tgaattttta gagcttgtat caggatttaa taatatttct aaaaagaaat
     6121 ttaaaagaga atttgcggag tttttatttg aaaaaggagt gaatgaaaaa gatattttaa
     6181 aaataacaaa tttaagcaaa acaacaatat ggagaattat gaatgaaaac aaaaagaact
     6241 aatgatgaga gagtatcgtt tttaacacaa ctcattagag aaagtaaaag tggatatgaa
     6301 aattacaaac cacactttaa agagttgcaa gatgcttatt tgcttgaaaa taaggtaatg
     6361 caaaaattga gaaaaagaaa taaatcaagt atctacatac caaaaataaa ctctaaggta
     6421 aaatacctaa tcactagcct aaacgaagtt tattttaata gcgaaagaat ggcagatatt
     6481 gaaacatata tcaatagcga tgatacgatt atagagctat ggcaaaatgc catagatttt
     6541 tatagcggta aaatcaatat gtttaagatt tttcaaccgc ttttcttaga tgttttactt
     6601 gtgggaacaa gtatagctaa gcttacttgg cataaaggaa tgccgcgcat tgaaagagta
     6661 gatattgata gtatattctt tgacccaaat gcactaaata gcgaagatat aggctatata
     6721 gtcaatgaaa tttatctaac ttataatcaa atccatgaaa gacaaaagct agggttttat
     6781 aaaaaaatag aaattgaaaa gctttttgat gaagatgatg aatataaaaa agtgaagctt
     6841 tatgatattt atgaaagaaa aaacgatgat gagtgggtgg tttctacctt atttgaaaat
     6901 aatttactta gaaatgaagt tactttgcaa gatggacagc cttttatctg gggttcaatg
     6961 ctaccacaac ttaaaaagat agataatgaa aactatataa gtgcttatgg cgagcctata
     7021 atggcttcag ctatgccttt gcaagatgaa attaacatca caagaaatct tttaatcgat
     7081 gctgtaagat ctcatattat gccaaaaata atgatgccaa aatcaatggg agtaagcaga
     7141 gaagatatag aaaccctagg aaagcctata tatacagatg accccaaagg aattcaaata
     7201 ctgcctcctc caaatataaa tagttctgga ataaatttgc aattattaga aagtgagcta
     7261 acagaggtaa caggaattag tccacaaaac aatggagctc aaactgcaca aaatgaaaca
     7321 gcaacagaaa taagcataaa agcacaagaa ggtggaagaa gaagtgctga ttatataaga
     7381 cagtataacg aaacctttat agagccttta tttgataggt ttgcaatgct tgtttttaag
     7441 tatggagaag atagtttttt taatggtttt caaagagagg atatacctag ttttagattt
     7501 aaaatccaaa caggcacagg tgccatgaat aaagaagtta gacgtgcagg aattcaagct
     7561 agtatgcaag ttttttcaca attatatcaa atgtatatga gcataggcga tgcaaattct
     7621 gcttatggga ttataaatgc tagtaaagaa cttactaaag aattattacc aattttaggt
     7681 gtaaagaatg taaatacttt atttgctttt gaaaataatg aagatattaa tccgcaaatg
     7741 caaggagaaa ctaatgctta atattgaaat aaaaagtgat atatctaaaa ccaaaggagg
     7801 aaagaattta atcgaattta taaaagcaaa atatagtgaa tgtttttata tagcaaaaaa
     7861 taatgatgag aaagagttaa ggttaaaagc tttagatact atggcttttt tagacataat
     7921 aatcaataaa ataaaggatg aagaagatgg aaaatgatgc tttaaaagat ttaataaatg
     7981 tgataacaga tgatgataaa ggagatgttg ctaataatgg cgatgaacct acgcaagtag
     8041 aagataatga atctatgcag gttgctaatg agaacgagcc tgattataag gcgatgtttg
     8101 aagcttataa aagtgaaaat gacaacaaat taaatgcttt aatgagtgag cttgaagctt
     8161 taaaaaatcc aaagaaagaa ccaagcgaac aagaattaca aagagagcag tatttaaaag
     8221 aattaggact tgatggactt gatgagaaat taaaaaggct tgaagagctt gataaaaagc
     8281 aaaaagacaa agaagagcaa gatgcactaa tcgctaaata cgcacaagta gaaagcgagt
     8341 taagaaaagc ctatcctgat gcggatttaa aggctatggc agaacttgca acaaaattaa
     8401 atggtttagg cgaaggtaat attgacagct ggaaaacctt gcttaatttg gtcggaaaat
     8461 caaataatgc caaaaaagct gaagatttat caagtgcaaa taataatgta agaactagtg
     8521 attttaacga taagttaaaa aaaggcgaag ttagcgagat agatctaggc aaagaattat
     8581 taagtttagt ataaaggaga aatcatggat tttataacag ctttaaaagg tggtacagga
     8641 ctaggctcta gctttgcaga tactttgatg aaaacaagca attttactcc aaatttagca
     8701 agtagcagtg gtggtttttt aaatggatta aaaaattctt ttagtaattt tggagattgg
     8761 ttatttaaaa gtagcgatac aaacaaaata actaattttg atagattagg aaatgtttta
     8821 ggcgctgggg gtgctttata tggtgcttat aatcagcaaa agatggcaca aaagaattat
     8881 gagttacaaa aagatgctta taactttaat aagtttttag ccaatgaaga actaaacaga
     8941 agaaagaata tggaaaataa acttcaaaat gtttggagta attaaataga tttggattta
     9001 aggagtttgt tttaaagggt aaatcttaac cccttgtata aggggctttg tttattcatt
     9061 gttaatttgc attgacaaca ataatacaaa gtagtataat aactattaag atttgtagca
     9121 tcttaccttt ctaggtggta atttagtgct aagggtggcg acccttggca ccacaccttt
     9181 taaaattata cacaaacttc cttaaatcct ttattttaaa agaaagaata aaggaaacaa
     9241 aatggcattt tataacccac aaagagtagt atttaatcct gatacaggcg ttatacaaaa
     9301 cgcaggaaaa gtcggtggtg tcttatatga catcatgagc aaaagttttg atgataaagt
     9361 taaagctaat gagtttcagc aagagcaaga tttaagaaag caacaaatgg aatttaatca
     9421 ggctatgcaa aataatcagc ttttgcaaaa tgaatttaat aatgctttag ccttgcaaaa
     9481 atttgacctt gaaagacaaa gacaagttca agataatgct ttaaattggg ctaaatataa
     9541 agaagataaa gattataatc aaaaatattt agattattta actggtaaaa atagtaatat
     9601 agttactaat aaaacaaata ataattcagg ctttagtata gatgctaatg gtaatttaag
     9661 tgaaccgcaa acaatgagag atgtttttag caaagaaagt aatggcgggg atttgtatca
     9721 ttttgcaaaa accgctaaaa cgcaaaatat aaatttaaat gatatttatg gatttggaga
     9781 taccataaat caaaaattaa gaaatactcc ttttagtaat agtaaaaact taaaacaaga
     9841 attcgcagat aagctaaaag ctgaaataaa tttagcacta gttaatatca caagtggcag
     9901 gatgagcaat gaagatagac atagattaga agaattggtt aaaacagata gtttttactt
     9961 ctttgataag tatgctaaac atgatattga aaaagcagta gaaatactat atagagtaaa
    10021 aaatgatgcc ttaaaaaaag aatatatgga tatttggaaa acagaaaggt atttaaaaga
    10081 tagagataat atagaaaatt attataacaa tatgtataaa aagctagaaa atgaaaaggc
    10141 tatgataaaa gattttataa atgctggaaa tattttagct tctcaagggc aaagagtgcc
    10201 attaaataag attctatcac aacaaccgca acaacaatta aaccaaaatt ttttacaaca
    10261 aaacaatatg attacattta gataataagg ataaaagatg acaatacaaa taccacaggg
    10321 tgcaaaaaca atgcaacttt ttgatatgaa tatagatata ccagaaggaa aaacttatat
    10381 agatattgat gataattttt tgcagaataa atataatcaa tttatacaaa ataatcagca
    10441 acaaaacaat tttaattcac aagaagaatt agctttagat ggtaagccta tgagtatgta
    10501 tcaagcacca caagtaagcc aaaatgagcc acaagaacaa ggagtatgga gtaaaataaa
    10561 taagggtcta gaagatttta ataaccttat agatccaaaa agaatgatat ctgaaggatt
    10621 ggattatctt tctccaaaag ttacaagtgg tgaagaaggg gcaaggcaaa aaatagaaga
    10681 tgctacaaat caggtatcag gtgggttgct acctagaatt tttactagcc ctagcaatga
    10741 agagcaaaaa caaatttttc aaatcgcata cgatgaaata aaaaaattag gatatgagcc
    10801 atttttagaa ataaataatg gagactataa atatataggc gttgataaaa atggaaaaga
    10861 agttgatttt actcctagtt ttagaaatac acttgctagt actaaaaacg agttagcatt
    10921 ttctgtagct ggtggatatg ctggaagttt agcaaaaaca gcaggacaaa caatagccaa
    10981 aaaagcttta aattatttcg caccatctgc aattggtgct ggtagcggtg ctatggctga
    11041 tcttcattcg caaagtaata atacaggaat tgaagcaagt tatatggact atgctaaaag
    11101 gtttggaagt gcagccgcag aagatgcctt agcaggtgct gtagttggat cagctataaa
    11161 gggaatagga aaaacatata aaagtgttgg tgatttaata agcagtgtta aaacaggagc
    11221 aagggccggt aaagatatga tagatggcat ggcggtaaaa ggtggtaatt taggtaatag
    11281 ggttatagat aaaatcaccc aaaaagatat tcctatgata ggaaaattta cagatggtgg
    11341 cttgcaaaat gcagaaacaa tttttaataa tcttacaaaa aatgtagaga ataaaaaaca
    11401 aatagatgaa cttatagcaa aagaaaatcc aacatactta gaaaatggaa agcctacaat
    11461 agaaatatta aaaaacattg tcgagcaagg acttaacaag aataatccac aatttataca
    11521 agatagcgct aaaagaacaa gtgctatttt aaaaaatatt tcaaatactt tacaaggagt
    11581 tccaactact caaagaagag aaatattatt aaaatcagct caagcttatc ccgaaatagg
    11641 aagtttttta gatgatgttt tgaaggctga taaggatgct agtatttctt ttttaaatat
    11701 aattaaagaa caagatgaag tatttaagaa caaaacaggt ttaaatggcg agtttgatgt
    11761 taaggcttgg caaaaagata atagctctta taaaaaaaga attaataatg aatacgctca
    11821 agctataaaa agtatagatg agcttaacaa cggctcaata aggttaagca aagaaggttt
    11881 agcaaagatt gaagagttta aaaacaacaa ttttttagag caagatataa aaacaaatat
    11941 tagtagcttt ctagaagatg ctattgataa agacttaagt gctgagcaaa tatttaactt
    12001 aagaagtgct ataaataagc aattagccac aggaaataag acatataata ctaaagaagc
    12061 ttataggcta gtaaaagata ctttagatga aactatgata aaaaatgcaa gtgataaaga
    12121 actagcaaag aagattttag aagatgctaa taaaaactat gcgttaaaag aaaattttaa
    12181 taatagttat ctaggaaaaa tcaaagacca agaaacaccc gaagcactcg cgcaaagaat
    12241 agctaatggt gctagaaata tcaatgaaga taaagattta aaaagagctt ttgaaggtat
    12301 gaatgaagca gagcgaaaag caaatgaaaa acatgctttt aatgcattac tagcaaaaca
    12361 tagaattgaa gatataggat atgattttaa gaacctagca aaagatatgg ataatgtaga
    12421 atttgtaagt aaagatttaa aatatgcaaa agaagtagta aatgtttatg caaaaattta
    12481 tcaaaacaat aaagacttaa taatgacggc tttagctagt agtggcaaaa atacaaattc
    12541 atcaatagct acaacaatac agggtgtttt tgatagaata ttaataagtg gtgtttttgc
    12601 tagaatacat gctttagttc cttttatgaa aagtgccaaa gaacaagcgt taagaaatca
    12661 aatactagat gcattaaaac ttgctaaaac caataaagaa gttatatcta atcttaaaaa
    12721 cataaaaata gcggataaag aacaaagtag aatttttaaa gatgctttgg ataattatat
    12781 taaagtagat aaagaacaaa ataaaatatt aaaagatgca ctaataaaag aaggtgttat
    12841 caaaggcgac aacttcttca tggataaagc tgatccgagc aaagcaaaga gtgattatac
    12901 tgctaaattt aatgtagaaa aatggattaa taatgtttca ggaattttaa aagatgaatg
    12961 ggtggtaaat ttaaaagcta tggctaaaaa acaccctgaa atgtttaaaa acgaagcaga
    13021 tgtatttaag gtaattaaag agataaaaga caatcctact cattttttta aaaactatga
    13081 tgatgaagtg gcattaatag ctaaaccttt aaaagatgat aaggttggca atatagccat
    13141 aaaaaaagat agtggcaaaa ttatacatat taataaaaca aaaggtaagg atttggaaag
    13201 attaaatcgt agaaataaag caatgctgac aggtacgcca actcctgcaa ccactaaagg
    13261 cagtactacc aatgtggaag gcgatttatt acagcattct tttaaaaatt ctacccaaac
    13321 caaacctaaa aaaaacttaa tggaagatat aaaagaaaat attgaggcta aagaagtaga
    13381 gaaaaagaat aaaaaaagcg taaaacaaag tcttgatgaa aaaatacaaa atgataaaaa
    13441 agctagtgaa gaaagaatta agaaaataaa acaagttata gctagaaagc aaaaaataga
    13501 taaggttaca gataaaaaaa ataacaggga aatagcagga aaaataggca cttatacgct
    13561 aaaaaatctt attaaattaa aagaaaggag cgaagataaa taaaaattaa gggttttatc
    13621 ccttaatttt attacaattg cttcaatctt caaactattt cttaatatta ataggaaaag
    13681 ataaagaaaa tgtaaattaa tttttaggtt tgttttttat agaatcaatt attttaggta
    13741 aaagtgtcaa tgctcctaat ataaaagcaa aataagcacc ttcattatgc ccattaagaa
    13801 taagatataa tccaacacat atactagtaa tagttataag tagaaaagat accattccaa
    13861 aaccattcca aaaatgataa gattttatat ctttttttct aatttctata tttttattct
    13921 ctaaatctag tattttatta tcgttatctt ttttatactc taaagatttc tctagcattg
    13981 tcacaattct atctgctaaa tctttaggca attttcctat agcattaagt tcattctcca
    14041 taagaaaatt aagctgagta ttgaaagttt gagatggatt ttctttattt tgattttctt
    14101 gtttaatagt attaggtgtt ttttgttttt gtgatttttt caatttgttt ctctctaaat
    14161 tcaatattct ctttatataa ttttgcttgt ttttctctta taatagcatt taaatcccat
    14221 aaattaaagc attcgttttt tataggctta cctacaaaac catctataaa agcttgtgtt
    14281 tttgtcattt tggttttcct tatttttgtt ttgtgatttt ttcaaattgt ctttgattat
    14341 cttctctagt ggcttcaatt tgagctaaag tagccttttg cttgctaact tctatttcag
    14401 ccataacttt gcctactttt tcaaaagttt caatttcttt attatcttta actatttcat
    14461 ttttcatatt taagttttac attatcttca aaatttgtat tgttttgctg tatagctttt
    14521 aatgcacctt gtattatcaa taaatctgta ttttgtattt ttggataata ccctttatag
    14581 tttaaataag aaataacaac agcattgttt ggtttttgtt cttgaagtat ttttgcttca
    14641 ttataggcat ttaatatact actcatttca attccttttg ataattagat tatacttttt
    14701 ttataattaa tttatactta ttttataaaa ggtaaatatt tgaagtcttc accctgcttt
    14761 ttttgaagac tttttagtgt tttaaggaca aactaagcag ggctaaatta aaatattaac
    14821 atcaatttaa ttattagttt ttatcttagt ttttcacgac taagataaga acgactaaag
    14881 ttaccataaa aacgattact tctatcattc ttaaccccct ttcaaacttt tcacaaagtc
    14941 ttcaaagaga tatccttaaa actatgaaat tatacgtaaa aaatacttaa aaatttcatt
    15001 tcatttcaaa acacactatt tttgaaatag ctatttttgg aaaaatcctt aaaactaaac
    15061 taaggagaat tcaaaaatgg ctttaccttc aatgggacat acagcacccg caacagaaaa
    15121 tgttaagtta aaacaatcaa tatacgaaac gattattaaa attggagcta ctgaaacacc
    15181 aattttaaat aaaataggca cttcaaaggt tacaaatcct ttaacccata gttggcttac
    15241 agacactttt gaagaaccaa aaaagaatgc aaatttggaa ttgagtaaat ttgtagggga
    15301 aacaaaaaac acagctcaaa aaactacaaa tgctactcaa atattcatta ccgaagccat
    15361 ggtatcaaaa gctttgttaa aagcaaatca atatggtggc aatgaaatgg agtatcaaat
    15421 aggcaaaaaa accaaagaac ataaaatgga tatggaatat gctttatttg gtctaggcag
    15481 agataatgat gtaaaaaaat cagttttcaa agattatgtt caagcacaag aagcaacaag
    15541 tggagaaatg gctggacttt ttcattatat cgctaaagga aaagatagct ttgctgatgc
    15601 aaagcgtgga aatgtattag cttttgatga aacaggagat tggagtggaa ctgcaacaga
    15661 actaacagaa gataaactta atcaaatctt acaaaccatt tggaatagcg gagttacgcc
    15721 taaagatgtc tttttaggag ctgacttaaa aggagctatc aataaatttg ctacaagaat
    15781 tttaggcaat gaaacaaaac tagcaggaca agtagtaagc cttgaaacag attttggaac
    15841 ggtaaatttc catatgcata gattattaag ccctaaatat ggtttgggtg atgttttaat
    15901 tgctggagat tttgagtata tgaaacatgg gctttatatt cctactatga ttgaagatgt
    15961 tccaactgat attactgcaa aagcaaaaag attttatacg caaagcactt tagaagtaag
    16021 aaatgctgat gcttttgcta taggcgtggg attaactagt ggaaataatg caaaggctaa
    16081 agcggtttta aaagcagcaa gaggtgcata atgctttgta ttatggctaa aaaactcatt
    16141 atcgctaaag ttaaaaattc ttacaaaatg atagaagatg atgaagtttt gaaagcctat
    16201 tttatggaag cattttatta tattttatca aaatgtgttc ctagtgttct tttaaaaaat
    16261 gtagaacaaa gcgaaaaagt tttcaggcaa gttagaaata atcatttttt gattattcct
    16321 gatgagcctg attttgacaa tgaaaaagaa catttaatga tagatgaagc acttagtttt
    16381 gctgtgatta attatgtttg ttatttgatt acaagatgcg aagaaaaaga ctttctggca
    16441 ttatgtgaca agataattaa tgagtatata gctaatgatg gcaaggagct tgatgatgaa
    16501 agaacatggt tgtgagtgta attttacaaa taaatttaat cgagctttga gttataaaga
    16561 ctatgctcaa agtataaata gtgctgattt tatagcttat ttagatgata aaaaatggct
    16621 tttagccatg gatgatctgc ttttcttttg tgaaaagaga attaaagata gtgattatta
    16681 tgaaggttaa aaatgggaac aagcttaaat gagttaaaaa caggtagaga aaaacttgag
    16741 attataaatc aagttttggc aagaatttca aatgttgcta ctgctttgga taataccaga
    16801 atagaagaaa ttgtaggact aaaagaacaa gttaataatt tttataatca aattttagag
    16861 cttaaaaatt tagttgtaaa aaatagcgag cttactcaaa gcaatactga ttttactaaa
    16921 aacaaaagaa atgaaattga aaaaataagc aatgaaataa aaaatacttt aaacaatata
    16981 gaagaaatct acaacaacat tataaaatca gaaaaagata taagcaatgg agttaatttt
    17041 gttaaagaca aatatcctga acttaatgag tttaataaaa attttgaaat tataaaaata
    17101 aaacttgaag aatattacaa catagctgtt gattttaatg caggtcttaa aaaaatagag
    17161 gaaaacaaaa atcttaccaa atcctattta gatttatcca tagaacttaa gcaacaaatc
    17221 ttacaagaac tagaacacgc acaaagtatt aaagaagatt tgcattctaa tatagagctt
    17281 gtaaataaac ttgtttcaaa tatcgtggca acaaagaatg agattatatc tataaccaat
    17341 aattttaaaa atgtaaaatc agaagttcaa aatatagtta atgatgctga agcaacaata
    17401 aaacttaaaa taaacactat tctttttgaa aatcaaagat taaatcaaaa tatgattaat
    17461 ttattaaagc gttgcgagaa gctagaggat gaaatagtag gaaaatatga agatatttta
    17521 aaaatagaag atcttataaa ctcatctaca gaaattataa atgatttgag agaagcagta
    17581 aaacaaagcg aacaaataag cgaagatatg agaagtttta cagctattat caacgatttc
    17641 aaaacagaaa tttctaatct aaaagcagat ttagaaagct atggcgaaag attaaaaggg
    17701 caacttgatt taaaattagc acaagcaaac tcaagtgtag atgctaagat ttcaagcatt
    17761 gagactctaa aaaatcaaat tgaagcatat gtagaagcta ataaaaatac cgtagatgtg
    17821 gctttagcta actttataga aagatctaaa atagctaatg aagatttagg aagattggct
    17881 gaagtagcaa gaacagaact cgctaatgat aaaacagcta ttgaaagcta tttattagag
    17941 cttaaacaaa gtatggttaa tgccatgaag aaagtatcca gtgatatcac agatgaaaca
    18001 agtggaatat tagctcaaaa aaaccaaata gagcttatca taacacaagg aaaatcagat
    18061 ttagatactt taatcaacaa ctttaactca aattatcaaa acaaacttaa cgaatttaat
    18121 tctaatacta atgagaaatt agcttctatt aattcactca gtgaagaaag tataacaaat
    18181 atacaaaata aaacagatga aaatataagc agattagata cagccagcga agaaaaacta
    18241 actaaacttg atgaaattat aaaagataat ttgggtggaa tttattctca cattttttca
    18301 atcgaaaatg ttttatttga taaaaaaata attaaattaa cttataagga gtaaagaatg
    18361 gcggacttag agcaagttgt aaatgattta aatttggcat cacaaagctt acaagagtta
    18421 agagaaaaat atgatggtgc tttggattta ctagataata aaaatacaca aataacaggt
    18481 gcgctagata gtgcaaaatc taatgccttg caagaaatac aaactataag ccatacagct
    18541 acaagtcaaa tttcgcagtt aaaaaacaca tccttaaatt tggtcaacga agctaaaaat
    18601 acagctattg aagaagttaa taatgcggtt tctggcatag atacaagcaa ggaagaagct
    18661 ttattggcaa tagaacaagc taaagcggcg caagaagaaa aaataacaga cttagagcaa
    18721 gccaaagaaa atataataac agagcttagc gaaaaagcca agctcttaac acaaagctta
    18781 gaatggactg tcggagaggg aggtaaattt acaaatctaa aggatgctct tagcgaagca
    18841 cttaaatata ataaatctaa tataatcact ataaaattaa aaagtggttt tgtttttaat
    18901 gaaaaaatag tttttagtaa tgctaatttt aataatgtga taataagtag tgaggatgac
    18961 attgttaaag ttaatccaaa taatgcagtt tttagcgaca catcggttag ctatttattt
    19021 ttatcaaact atggtattac tcctataata aatattaaag tagatttaaa tcctttggaa
    19081 aattcaaata gtactaaaaa aatagtattc ttaggattat atcaaaatag tagaggtttt
    19141 atatcaccaa ataaaggttg catgaatgct gtatgggatg caataatggt tgaacaagct
    19201 tctacacttc ttgcaaatgc ttgcgttgta gaaaattcag gctacgatgg cgtgttttgt
    19261 agtcaaggct ctattgttaa tataagtaat gccactatta aaggtactgc tagatatggt
    19321 atattagcta gacaaggtgg ttatatttgt gcaaatagcg ctaatctaat agagcaaaca
    19381 caaggaactt tgctgcagtg tgaaggaggt ataatacatg caaatggatt agttacaaca
    19441 ggctctacaa ctactgaaac aaatataaca ccaaatcaac cagcttcttt cggcattatt
    19501 tttaaataag gatatgtaat gatagtaata aaaaacaatg gttctatttt agaaaattta
    19561 aataaggaaa ttataaaaga tgtaatagca aaaaatagta tattagctat tgtaaataat
    19621 agagctttaa gctataaaga aaacagagtt gaaattgaag gtattgatga ttatatagaa
    19681 aatatatatc aagacgacat tacacctgaa gaaatacaag caggaacaca agcagttaaa
    19741 gaatattgtt tagaaaacaa cgaattagaa ctgcttaagc aatatctacc attagtttta
    19801 agtggtgctg agcttttaac cgaaatgaaa gcggttaaac taattgaaat taacaaagat
    19861 tatgaaaaag ctattttaaa agttcaaaaa gattatatcc cacaatctga aatgttaagc
    19921 tttgaaacac aggaaagaga aagccttgct tacaaaaatt caaaatataa agatactagc
    19981 ttatgtccat ttatgcaagc aatagcaact gctaggggta ttgatttaag aacgctttgc
    20041 gataaagcat tagaaaaagc tacactatat agacaagcaa gcggagcttt aataggaaaa
    20101 agacaatgtt tacaggatag aattgaatta gttcaaagct tagaagattt aaatttaatt
    20161 gcatgggaga gtgaatgagt actgaaaata taataaaaga aggtgctata cttggctctt
    20221 taagcggatc agcattgtta ggattgatgg tttttgtctt agctgggatt gcatggcatt
    20281 tatataaaac tttacataaa gaagctgggg aaaaaacaaa agaacttata agtgaaacca
    20341 aaaatactaa tgttcttatt agagagcaaa ttgcaatatc taaagcaagc aatgatagct
    20401 taatcaaatt tatacaaacg cattgctcta aaactaacga taagctagaa gctatagaaa
    20461 cagaccttat gcgaatggat gaaaggcttg ttaagcttac tcaaataaga aatgatgagt
    20521 taagaatgat ttataaaaga aaggaaaacg aatgaaaatt gcattttata aagttaaaga
    20581 aaatgacaaa tctacttttc ttgataaagc aatagctttt tttacttcat cttggaaaga
    20641 aagattaaat ggagattttt taaaatccta ttctcactgt gaaataatct tagacaattt
    20701 aatgattagc tcaagtccta gagataaagg agtaagaata aaagaattta aagacagtgg
    20761 cagatgggat tttatagaaa tcaatgatat aaatgagaca aaaataaaag aatttcttta
    20821 ctctcaaata ggaaaaaaat atgatttttt aggaattttg ggctttttca cattcacaaa
    20881 agatagtgaa gacaaatggt tttgttctga aatcataata agagcgttgc aaataggtgg
    20941 tttggttaag ctaggagata tgaatgcagg aagttcaagt cctaataaat tatataaaaa
    21001 actaaaggat acaaatgaaa attaaaatca ttagaagata cacaggtaaa acttgcgtta
    21061 taggtaaatt taaggtttta gatgatgatg ataaattgtt acttgaatgc ttttctttag
    21121 aagaggataa agaaggttta caaagcggta aagatttaag aatacctgaa ggaaattata
    21181 atttaagaag acacacacct tcacgatttg aaaatacttt aagaagtatc acaaaaaaag
    21241 atgatgatac aatgataaat gtttataatg atgaagttcc agcaagtcgt gcaattttaa
    21301 tacactgggg taatacggat aaagacacac aaggttgtat cttgctgggg cttactaaag
    21361 ataataataa tgaaagtata ggtcaaagca gacaagcttg taaagaattt tatgatttgg
    21421 tgtatggtaa aaatcttgaa gacattaaat tagaaataac aaatgagtta gcatagaaag
    21481 gagaaagaaa tttaagtagg ttaccaaata atcccctaaa aaggggacaa gactaataag
    21541 ccttgacaat aattatacat aagagtataa ttataacgat tatttggtga tatgtaatca
    21601 taaaaatcac ccactttcaa gggtaaaatt tagccatagg gggctagacc tacggctaac
    21661 ccttaggggt attgtataaa aaccttactt aaacttctaa aacaaaatat gataaatctt
    21721 ttatttggaa atgcaaagct ttatatcgct ttagtatcaa tggcaatctt agcaggatat
    21781 ttttatctaa gacttgatag cacaaaggcc aaattagaaa aaagtcgaag tgatttagct
    21841 ttggctttaa aagtcaatga aaataatcaa gaaaaattaa aagaattaaa tcaaattcat
    21901 aaaacagaat taaaggcttt aaatgaagca aacaatcaaa aaaatcaagt acaagaaagg
    21961 gtgcaatatg ttaaagaata catttataaa agcaatgaaa ataatattac caagcttttt
    22021 aacaatgtgg ttgataggct gtgggatgca aacagggcaa gtggtaacca aaatagaaat
    22081 tcaaaaagtt agaattccgc aagagttatt aacattaagt ccccttgaaa agccaaaggc
    22141 aaaaaatgaa ctagatattt taaatgctta ttctatgctt ttttacaaat acaaacagtg
    22201 tgaaattcag ataagcaaaa taaaggagct aaataatgag taatacaaat gttgattata
    22261 acaaaagact tgaagttttt aaagaaattt atccgcaaat tttagaaatg agcttagcag
    22321 aaaaatcccc atttggagaa tttaaaaaac ttttagaaca atttggaaat gataatataa
    22381 ttagaaacga tacacaattc cagagcttag cacaagctct agtaagtgtt ggacaaacca
    22441 tagtagcaca aagtcaaaac actgccttgc aaatgatttt aggtggagat gaaaatatag
    22501 taaatcaagc caatataaat ctaacaaatg cacgaataga aacagaaaag gcaaatgcaa
    22561 atttagtcaa aagacaaact gctcaaatag atgatgaatt agagctaaaa gagcaaagtg
    22621 tcaatataga taaaagctta agtatagaaa aagaaaaact attgcaagcg caaacagaaa
    22681 cagaaaaagc aaatgcaaat ttagtcaaaa gacaaaccgc tcaaatagat gataacttaa
    22741 gaatagaagc tgcaaaagtt acacaaagtg ttcaatttgg atattgcact ggtgggcttg
    22801 atataccaca agaaattatg aaacttgtta aagaaaaaat agaaaatata gaaaaatttt
    22861 aataatgcta atagatgaaa aaaggcttat gagaaattat actcttaagc ctgcttatcc
    22921 atcaaacata ggagaattgg atacagggga agtatataaa caatggttta cctatgccat
    22981 gataggcgta aataaatatg ttgaactttt acataaacaa ctcataagaa aaggtaggag
    23041 ttatagccaa aacgcaacac atcctcttta cccaaactcc tatattgtaa aaaaatataa
    23101 cataaaaagt gcatcaacag ccccttatga taaacatagt cacggcaatt tgggcttaaa
    23161 tcaatttttc gtgggtcaag atccgtacaa accctataaa ggagatccta gcagtaaaaa
    23221 tggaatatat catgatattt gcgagataag aactaaatat aatttaggaa atatgcaata
    23281 ttattatggt tttccaaaca atttaactct tttatttgaa aaagaaaaag cttggaaata
    23341 tcacggaaaa ggattttttt atatcgatga aaaaataaat tttaaagata tattaaataa
    23401 ggcattggaa aatataaatt atgaaatgct tataaatgat atagaagtag ttattttttc
    23461 tcaaaccatc caaaaaaata atgaatggat atatcctagt attgatgata ttaaaatacc
    23521 aaacattaaa gtggaaaata ttgaatttaa accattattt ggaaagcctt ataaaaaatt
    23581 atgcattgat gttgaaaaat tttataatga ttttaaagaa ttaaataaaa atatatttag
    23641 aatcgaaaaa gtagaaataa cctataaaat atatgaaaaa gctcaaaaaa ctagagaaag
    23701 tgattcaggt aaaacatact acgctttaac aagcaaaaaa gtatcttttt ttgaagtatt
    23761 taactctata aaagaaaatt ataagtgcaa gtatgcactc cccttgtgtt tttacaatag
    23821 ttttaatttt gtttgttatg aagagcctta tgtagcattt tcttctctaa ataatgcaag
    23881 ttggggtaaa aaagatacga gtgttacgcc aagtatatat ccgctatata gaaaaagttc
    23941 aaatttgcct tatgggcgca gagatagatg gtttgcatta tgggatagtt tttattatct
    24001 ttatgtatac gaaaaatcaa gcaaaggagt tttaagcttt ttagcaccta ttgtcactat
    24061 cgttttagct gtagctactt ggtggattgg cgggcaaggt gcatggcttg gtactttaat
    24121 aggagtgagc gaaaccattg cttcaggaat cacactaggg attagcttag gtttagccat
    24181 aggttctcta actggaaata aaacattctc cattcttaat gctgtttggg gtttggttaa
    24241 ttttttaggt gcttggggtg ctaataattg gaatttagcc gctgatttta caaaaaatac
    24301 agcacaaatc gcacaagaga tgacaacttt tgaatcaact ttaaatattg cgggtaattt
    24361 attaagcgga gctagtaaga tttttgatgt tgttcaaagc attacagcta atacccctga
    24421 tatgataaat gagcaaaaag gtagcgattt agacaacaat gaaggcggaa atgggagcga
    24481 agctttggaa ttagcaaaag atatgattaa tcctacaata tggtataatt ttgaaaccac
    24541 agatatacta aacgaaaaaa tagaaaaaaa tagaaatctt atttttgcat tctaaaaagt
    24601 tattgaccta tatattgact ttgtaaaaat atataaaata attatatgta aatataggca
    24661 atatctctat attgttcaaa tctcgctaac cgcaccattt gtaccataag ctactataaa
    24721 tatcagactt ataaaatata gataaaatag gcatttgtag ctatataaag cctaaattaa
    24781 agttttttcc attaaaatcc attttgaaac ttttttccta acttttctcc taacttttta
    24841 ttttttattc caaaaagtta ggaaaaatcg atacaaagaa cctattttaa actacaaatg
    24901 atatttttca aaaaacatcc aactatctct agatgatttt agtaaaaacc taaacaatag
    24961 atcttaaaaa attatagata gctttttatc tttccttatt taaagcaaaa aaccaaaaat
    25021 attttttacc ctctcaagag tgattagaat acctttggtt ctttttatca taaaacatag
    25081 ttaaaattat atataatctc aaaaaccaaa aggagcttat tttatggaaa ataatcaaaa
    25141 caaacaagaa aaattagaaa gcgttaatat agacaaacct atagagaaaa aagaggagga
    25201 tttgttcagt agaaattcag tagcagaaca actaaataca attattaaaa attataaaga
    25261 agaagatagt attacttttg gaattatagg tgattggggt agtggaaaga cctctttcgt
    25321 taatatgact ttggaggatt ttaaagatga tgaaaatttc attatagtga aatttaatcc
    25381 ttggaatatc tctactagaa aaaaacttat cagcgatttt tttacaacgc ttgccaaaga
    25441 aattcgtaaa gcttcatttc caaaatttaa aattaaaaat ttaaaaaaat atattctcat
    25501 gcaaaattta aatttttatc tgaagtacct aataaactag aagatttatc attgttattt
    25561 aaaatgtcat cttatatgat tgcagatcca gttgcttcag tggcaatgtc tcgagcttca
    25621 agtattatta ataattttaa caaactatta agtgcagaga aaaagggttt agatgaaatc
    25681 aaaaatgaaa ttaacaccgc tttattaaat atagacataa aaataatcgt agtcattgat
    25741 gatcttgata gattggccga tacagatata caagaaattt ttcaacttgt aagatctata
    25801 gctgatttta aaaataccat atatatattc tttcttatga tgaagagatt gtttctaaag
    25861 ctttagataa aattcaaaaa gataaaggtg gtagatatat agaaaaaata gttcaagttc
    25921 ctattaaatt gcctaaagtt agtcaagaaa acttaaaaga tatatttata aaaaaactaa
    25981 aaacaattca tataaaacat gaagcattgg ataaagatga gtttattaaa aaaataaaag
    26041 aaaataattt tgcagatgct tttaaaagta ttagagatat ggagaggttt ttaaatgctt
    26101 ttaaaattga agtcaatgct ataaatcaag aattatattt atatgatttt gctgtgatca
    26161 cattattaaa aatatttgaa cctagacttt atgattatat atatgacaat agaatgttat
    26221 ttattgaaca atataatcct tatgatcaca taagtagtga aataaaaatc cctgaaaaca
    26281 ttgaacaaga aataaaaaaa attactaaat caaataagga ttttgctttt aatctaattg
    26341 ggtctatttt tccaaaaata aataaccaac cgcaagatta tagtcagcta attcaaaaca
    26401 atacagacaa ccaaaagaaa agaataactt atccttcatc ttttaaatat tattttttat
    26461 taaattttcc taaataaata tttttaaaat agaaaaattt tataaagtag ctttgcaaat
    26521 cgaagtctca ttttttgact ttgatttgta gtacaaattt tatatccata ttttaccttt
    26581 caaattaaaa gcttttcatt actttttata tttttatatt taaatttctt aaaattaaaa
    26641 tcaaaggatt taacatgcaa atgcaagaaa taattgaaaa gttaaaaagt tataggcaaa
    26701 gaattaggta tcaatcctga tacttttaac ctcatgaatt acctatctat aaattctact
    26761 taagtaaaag tagagataaa taactcgatc gattatttta aaatttatcg cttgctgcga
    26821 aaagagtata gaatttatta taaagataaa tctatctaca caatagtaaa accaagttta
    26881 aattacgaaa aataaaattt atcaattata agcaactaaa ctatgctttt taactagttg
    26941 taaattttta taaaatattt catcacataa aaaatctatt cttcaatgat tttactgata
    27001 aaaacatatt atatgtataa ttttacatat tttaacctat aatcaaattg tttttgttat
    27061 tattctaaaa ttagattatc aaggaaaaat atgcaagaaa atccacttga aaaacaattt
    27121 ttaaatcatc ccctattttc taaaattcag aatttgaaag aagtcgaact ggattctaag
    27181 ctttatttag aagatagtgt taccctaaaa acaaactctc aagcaaaaaa agaaatttta
    27241 gaactcacaa aagaattaaa accatggaga aaaggtcctt ttaaaataga tgaacttttt
    27301 atcgatacgg aatggcaaag ctttattaaa ttcaatatct taaaaccctt tatgagtgaa
    27361 atttctcaaa aatgtgttgc tgatattggt tgcaataatg gctattatat gtttaaaatg
    27421 cttgaattta atccaaaaaa acttataggc tttgatcctt caatcaaata tcgcttacaa
    27481 tttgaactca taaatactct tgctaaaact cctataaaat atgagctttt aggcgtagaa
    27541 gatttgccaa aatatgggtt gaaatttgat gtgattttct gtcttggagt gatttatcac
    27601 agaagcgatc ccataaaaat gctaaaagat ttaaaggtgg gattaaataa aaatggaact
    27661 gtatttttag ataccatgta tatagaagat ccaagagaaa ttgccctagt tcctaataaa
    27721 acctattcta aaatccctaa tatttatttt gttcctagca ttagcgcttt aaaaaattgg
    27781 tgtgaaagag caggatttaa agattttgaa gtcctagcta caaaaacaac agatgaaaa
//
LOCUS       DARAII010000008        27745 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.008, whole genome shotgun sequence.
ACCESSION   DARAII010000008 DARAII010000000
VERSION     DARAII010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27745
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.008"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..202
                     /locus_tag="SB143_000300"
     CDS             <1..202
                     /locus_tag="SB143_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEF9748871.1"
                     /translation="SIMKDLAAEGLTMIVVTHEMGFARNVANRIFFMDKGELAVDANP
                     KEVFENPKNERLKEFLNKVLNH"
     gene            complement(229..1663)
                     /locus_tag="SB143_000301"
                     /pseudo
     CDS             complement(229..1663)
                     /locus_tag="SB143_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004275018.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
     gene            complement(1820..2287)
                     /locus_tag="SB143_000302"
     CDS             complement(1820..2287)
                     /locus_tag="SB143_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEF9748872.1"
                     /translation="MFNIVLIHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAV
                     RRAGLDYWEKLEPVIWESLDIFLEHNLIYKDRFFFATTKSNKFYFQAKFQENDFLFFG
                     SESYGLPMELMQLNWDNAITIPMKACGRSLNLATSVGIVSYEALRQNFDRFSL"
     gene            complement(2290..3279)
                     /locus_tag="SB143_000303"
     CDS             complement(2290..3279)
                     /locus_tag="SB143_000303"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEF9748873.1"
                     /translation="MSLIKINQKAYESNLKIIAEKIGSFSRLICVFKDNAYGHGAKIL
                     APIASTLGVNFIAVKNEKEAYELEDFFDNILILSHHPHGKENSKFIYALNDIDKINAY
                     QNDTRIHLKIDTGMHRNGVCVEDLNEALLKIKCSALKLEGIFTHFAGADEMDASFFIQ
                     REKFSKAKDIAKQIYKNLIFHSHNSPALFRAVKIPEDELCRTGLAQFGYGDESLKKVL
                     SLYAHRLSHRELQIGQSVGYGGAFSATEKIKIATYDLGYADGLFRYDGKGDLLLANKQ
                     KILGKISMDSFSCQDFGKEICVFDNADVWADFFNTINYEILVKLHPDIPRVLV"
     gene            complement(3279..4256)
                     /locus_tag="SB143_000304"
     CDS             complement(3279..4256)
                     /locus_tag="SB143_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEF9748874.1"
                     /translation="MLKKILAFYFICISALGASDLVKIYLNQGLDAVGVAIEKELTNK
                     DFWLDEIGDRNISLGYYDDDVAIVLTNKTDKILRVYSYSDGKIKQDFEQKAIITGLMG
                     DKQVEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGTRLDEFKTRGCIALFNENLEEFAKVVQDKKVFAMTEEKEKVRAKKEDIAALLADL
                     FAWKLAWTDSDINTYLNFYDEKQFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNVENETMYRISFYEDYYTKNYQFKGDKILYVKIDSKGKMKILAEQ"
     gene            4577..4882
                     /locus_tag="SB143_000305"
     CDS             4577..4882
                     /locus_tag="SB143_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748875.1"
                     /translation="MVSAYPKPIKIFKNTAIKVSNFPFDPNLKIKIYSLNSYIGNIIP
                     QFTNTKDSIIINFTGKSVTDDSRFRVEFLNNDKPIGFFFDFDVTLQKIYNSAILPQN"
     gene            4983..5399
                     /locus_tag="SB143_000306"
     CDS             4983..5399
                     /locus_tag="SB143_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEF9748876.1"
                     /translation="MKKIITLSALLALSLYAKDIEIKDAFIKQTPPNAVNSAIFLTIV
                     NNTDKDISLIDAKTDINQVSELHTHEHKHGMKAMIQIPEIPVKAHSSTELKPGSYHIM
                     LFKLNQAIDENTKANLTLTFDNNQSLEVRDIGSKKL"
     gene            5403..5855
                     /locus_tag="SB143_000307"
     CDS             5403..5855
                     /locus_tag="SB143_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748877.1"
                     /translation="MKKIFFILASGLSLLILYIIFDFYVLKDRTTLSQTEVLSPLSCD
                     LNIENCTYSFKDREVLISMDPKPLQSLEITNLKIKNLGNYKNLKIKIYGLNMFMGDIM
                     PRVTKINETDYESRLVLAACVLEVMRFRAEVFEDDKPIGFHFDFDLKR"
     gene            5852..6406
                     /locus_tag="SB143_000308"
     CDS             5852..6406
                     /locus_tag="SB143_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEF9748878.1"
                     /translation="MKKVFLFAVAFVAMGILAFCLINKNQYDFNLRSAFKEQTTLEDF
                     KGKKLIVYFGYTFCPDICPSTLSLIGKNLKALKDPKAHVLFISLDISRDGNLTSTNEW
                     LRYFYPNADALIAKNDSVLKKVAKNYGVQYQKIDINDSVMKYSVAHSSEIFLIDENGK
                     LQKIIRDLNPEEVAKELKNFLSSK"
     gene            complement(6412..7311)
                     /gene="cysK"
                     /locus_tag="SB143_000309"
     CDS             complement(6412..7311)
                     /gene="cysK"
                     /locus_tag="SB143_000309"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEF9748879.1"
                     /translation="MRVYKKVNELIGNTPIIQLEKFGANLFAKCEFLNPSHSIKDRAA
                     FAMIQSALNEGKIDSKTVIVEATSGNTGIALAMICADLGLQFVATMPESMSIERRKMI
                     TLFGAQLELTPASLGMKGAVDKANEILKNTPNSFMPSQFDNLANKNAHRKTTALEILK
                     DLDNDLDIFVAGFGTGGTISGVGEILKEKLGKIHVVAVEPLASPLLSKGEAGSHKIQG
                     IGANFIPAILNKDVIDEIITVSNEDAINTAKELAKNGLMVGISSGANVFAASFLAKKF
                     PDKKILTMLNDTAERYLSTDLFA"
     gene            complement(7439..7729)
                     /locus_tag="SB143_000310"
     CDS             complement(7439..7729)
                     /locus_tag="SB143_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEF9748880.1"
                     /translation="MTKADFISQVAQTAGLTKKDATAATDAVISTITDVLAKGDSVSF
                     IGFGTFSTAERAAREARVPSTGKTIKVPATRVAKFKVGKNLKDAVAKAKKKK"
     gene            complement(7787..9646)
                     /gene="ciaB"
                     /locus_tag="SB143_000311"
     CDS             complement(7787..9646)
                     /gene="ciaB"
                     /locus_tag="SB143_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEF9748881.1"
                     /translation="MNNFKELAKLVKNRKENINLFYDLLDSEQWGEYFERLLTLSELK
                     RDKTTLLAILRRLVDLKEENLIQEWKKNNFKEEKITKLKHKFYEEIRKFYEKEHQELI
                     YEIKERKIVNDFYQVLIQGVHNIGLVINAFEVSWTKEIIEKNNKILATQFPNLNDAME
                     FLRKNQLYQTTPKGDICERSYGVLVRIGNMWKFVPYARFFEDEILKLEFAFDDMIDKL
                     KQIAKNEDELAYIEYFQKLKLAFCEKEEEKVIGAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDESDFDALKFSKDIKQSFMRVYENIGIQDEQLKNEVLHNID
                     KTQLYVCAPMIYYGAELKGLFSAQVVPNDEFVSSIAGKKIFAFLNFVYENAKTKPFMR
                     IASEIFNKDFLDYGRDILFFKEKIWKRVYEVSTIGHEFGHIFFIAKDSEKLMNQSGFF
                     KNIEEYKATSGGLVNFFYHEQEDLKLPVFHELIKRAVSLIAWQRVEEVKPYYTEGLIH
                     LSLLFQSGVLKFENNRLNVNFNLEYYENFKDATLKNYHDLAKHYALKLDAKEFLNRFC
                     ALENDIFMPLYPECKEFVQFYYDLYEKIGNEIDNSGEFERYKMQKNPKKHVFT"
     gene            9711..10124
                     /locus_tag="SB143_000312"
     CDS             9711..10124
                     /locus_tag="SB143_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEF9748882.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKIVSVGKTSIGVEVEVSAQRVDSQGCTSC
                     INVTSALVTYVSVTREGKKKPISEELKKIHGFTNT"
     gene            complement(10170..10367)
                     /gene="kcuS"
                     /locus_tag="SB143_000313"
     CDS             complement(10170..10367)
                     /gene="kcuS"
                     /locus_tag="SB143_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEF9748883.1"
                     /translation="MNFKKFKHYYEKAERFFHPLVGLSSYDKYLEHMKHKHPEKTPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(10348..12459)
                     /locus_tag="SB143_000314"
     CDS             complement(10348..12459)
                     /locus_tag="SB143_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEF9748884.1"
                     /translation="MARFGTKILWLFVAALGAICFAHLALQNGESVSAIYLVVTAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPAVLENDGRDFVPTNRTVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRRGRSLGEIIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGVYMRFIRPGRV
                     GEASVIGFILLILAIHYGSVIAADPYWAKIFTLEAPTLAIIMMAYGFIAAVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIIIVAPDLQMPKTNAQYFDGTGPVFAGAIFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALPVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGSDVASAAQAISSWGFSITPEEISTLTANIGEYTILSRTGGAPTFAIGV
                     ALILHELFGGIDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGNI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATAIL
                     VKMGKAKYTWVTLIPATFVLVATLYGGIQKVMPYEEGNKVGNAVSHVAAVTIQSQKIQ
                     DLELKLNNAKDENEIAAIEKEISVATQSKIGNLINAILCVFFMLATLLVILSCIGICL
                     GKIKIPLKETKYIKLNEFQKV"
     gene            complement(12845..13774)
                     /locus_tag="SB143_000315"
     CDS             complement(12845..13774)
                     /locus_tag="SB143_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEF9748885.1"
                     /translation="MRGYKIFSGSANVEFAKQISKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCVPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIEAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKTKHF
                     KNAIVGSPDIGGVARARSVAKNLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKNKGAKSVMACCTHAVLSGKAYERIASGALDELVVTDTIPLR
                     EQLPNIKVLSVAPVFAEVIRRVYHNESVNSLFI"
     gene            complement(13875..14534)
                     /locus_tag="SB143_000316"
     CDS             complement(13875..14534)
                     /locus_tag="SB143_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEF9748886.1"
                     /translation="MENVFNAQNIEFLMQGLVLTLKIALATCIISIIFGTFLAITKNY
                     GDRFSRLLATCYIDIFRNTPLLLWMLAACFVLPSFFPQMPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFSKFFTLFYIILPQTFRKVVPSLLSQIVTTVKDTAY
                     LAGLQIAELTYNSKNILARLTSFDEILATIGFVAVIYFAICFSLSMLVRYYAKKTAYV
                     S"
     gene            complement(14545..15297)
                     /locus_tag="SB143_000317"
     CDS             complement(14545..15297)
                     /locus_tag="SB143_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEF9748887.1"
                     /translation="MNESVGFVDKLRQLLSSWGLYDESSTNPFAIWKFLDALDNGDAF
                     ISGFIYTLEVSILALLIAIVFGTIGGVMATSKIKILRAYTRVYVELFQNIPLVIQIFF
                     LYFALPGLGIHLDIFTIGVLGIGAYHGAYVSEVVRSGILSVPRGQFEASASQGFTYVQ
                     QMRYIIVPQTIKIILPPMTNQMVNLIKNTSVLLIIGGAELMHSADSYAADYGNYAPAY
                     IFAAILYFIICYPLAYFAKVYEDKLKKAHLTR"
     gene            complement(15299..16078)
                     /gene="peb1A"
                     /locus_tag="SB143_000318"
     CDS             complement(15299..16078)
                     /gene="peb1A"
                     /locus_tag="SB143_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEF9748888.1"
                     /translation="MVFRNSLLKLAALALGACMAFTSANAAEGKLEAIKAKGELVIGV
                     KNDVPHYALLDQATGEIKGFEVDVAKMLAKSILGDENKVKLIAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRVYNFSEPYYQDAVGLLVLKEKNYKSLADMNGATIGVAQAATTK
                     KVINTAAKKIGVKVKFSEFPDYPSIKAALDAKRIDAFSVDKSILLGYKDENNEILPDS
                     FDSQSYGIVTKKDDANFSNYVNDFVKQNKTEIDALAKKWGL"
     gene            complement(16103..16831)
                     /locus_tag="SB143_000319"
     CDS             complement(16103..16831)
                     /locus_tag="SB143_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEF9748889.1"
                     /translation="MIELRNVNKYYGTHHVLKNINLCVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKLRQEAEETAYQYLKVVGLVDKANVYPATLSGGQQQRVAIARALCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISTQRNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     VPSEFFSNPKTERARLFLGKILKN"
     gene            complement(16994..17782)
                     /locus_tag="SB143_000320"
     CDS             complement(16994..17782)
                     /locus_tag="SB143_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEF9748890.1"
                     /translation="MEEKINPSELELNEFIKIINEISGIDLNEKRNILVLKLSKFVSS
                     TGVKTFAEFLSKLQINRQLRQDTLDFVTIGETYFLRELSQLKEIIFYAKSLEKTVNIL
                     SAPCSSGEEVYSMAILGAQNFLKDMMILGIDINSNVIEKAKVGKYQGRTLQRLSESEK
                     RRFFTDIGEQTFSINKSELCTCRFELCNVFEDKFLRLGKFDIIVSRNMMIYFDYDSRI
                     KLMERFYQILADNGRLYVGNADLIPETTFFKKVFSPRGVYYEKI"
     gene            complement(17795..18349)
                     /locus_tag="SB143_000321"
     CDS             complement(17795..18349)
                     /locus_tag="SB143_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEF9748891.1"
                     /translation="MKLLLIGSSTGGPNQLKFLLKDVDIKNTCVVIAQHMSASFIPSF
                     VNQFNKEALSEVSLLNDKEVLANKIYICQKNTILSGNLNLMANWKEVVTSFKPNVDLL
                     FHSAVPLVKTNKILAVILTGMGDDGAKGLFELYKVGVKCLCENEADSIVYGMPKKAKD
                     INPKLRPMSLKEIKQEILNFINEE"
     gene            18518..18955
                     /gene="rpiB"
                     /locus_tag="SB143_000322"
     CDS             18518..18955
                     /gene="rpiB"
                     /locus_tag="SB143_000322"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEF9748892.1"
                     /translation="MLRKKIYIASDHAGFMLKEKICTFLKEKQIPFDDLGTNDPTSCD
                     YPDYAHLLASKIDEQSFGILICGSGIGISIAANRHKNIRCALCNESLSAKLARKHNDA
                     NVLAFGGRLIGIDAAIDMIENFIQTPFDQGRHVKRIQKIEVDC"
     gene            18955..19287
                     /locus_tag="SB143_000323"
     CDS             18955..19287
                     /locus_tag="SB143_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748893.1"
                     /translation="MFANWFILTALICATIYLVVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            19284..19832
                     /gene="apt"
                     /locus_tag="SB143_000324"
     CDS             19284..19832
                     /gene="apt"
                     /locus_tag="SB143_000324"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEF9748894.1"
                     /translation="MTKLTQNEQQFLSESIRVIPNFPKEGIIFRDITTLLNNQKALSF
                     LLDHLSKRYQTMNLDFIAGTESRGFIFAAMICAKLNLPFVPIRKPNKLPSNTYSCEYE
                     LEYGTDRVEIHQDAFRNIKNAKILLVDDLIATGGTALASFELIKKAGGECIEACFLMN
                     LKNLGGEEKLQKHCSVYSVLEF"
     gene            19932..20537
                     /locus_tag="SB143_000325"
     CDS             19932..20537
                     /locus_tag="SB143_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEF9748895.1"
                     /translation="MEEFIIRIWNEHVETWGYLILFCWSILEGELGLIFAGLAAHDGK
                     MHVVLAIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLRSQRRKFAVAHLLLQRFGWPII
                     FIQRYMYGFRTVIPMSIGITRYSAKKFAIINLLSAWVWAAITILLAWHFGNLIQNFLT
                     WAKNHWYLAAIMIICFLSLLVFTFKQIEKAILKEKRKKNDI"
     gene            20527..21978
                     /locus_tag="SB143_000326"
     CDS             20527..21978
                     /locus_tag="SB143_000326"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEF9748896.1"
                     /translation="MIFELSDKKIHGIKADFELVFIQDKNLKPFTNEKDFFKLNNYTG
                     EGILLDLNNKRLFIELKSLNYEDIRLALYTAYKNLEKLNIKSVKLPSILGDCVVRSFT
                     SLVEGVLFGAYKFDKYKSEKKESTLEKFIISAEELNAKKFNLDEAKIGLLRGEILANA
                     TNFAKDIVNEIPEIYTPLKMAEDAQNLAKKNKNITCKICDEKFLAKEKMNAFLAVNRA
                     SAHPPRLIHLSYKAKNAKKRIVFVGKGLTYDSGGLSLKPADYMLTMKADKSGAAAAMG
                     IIKAVAELALELEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSYAQDLKPDLLIDMATLTGACVVGLGEFTSGIMGNNEELQNEFYLSSKKSGEYTT
                     ILHFNPHLKELIKSNIADVSNSASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YIEKSWGYNSFGAGGTGVRMCVNFLIHLLRKNK"
     gene            21975..23078
                     /gene="ychF"
                     /locus_tag="SB143_000327"
     CDS             21975..23078
                     /gene="ychF"
                     /locus_tag="SB143_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEF9748897.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLGKKIEKLNKEARANTKGAK
                     ESLEMANSLLEHLNKGLPASTYLQKEDEIFQALNKELRLLSAKEVIYGANVDENGISE
                     DNEYVKILKDYANKNNHEVIKLCAKIEEELVGLSNEESAEFLSSLGVNESGLDQIIRT
                     AFSKLGLISYFTAGVLEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDFITY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(23085..24470)
                     /gene="argH"
                     /locus_tag="SB143_000328"
     CDS             complement(23085..24470)
                     /gene="argH"
                     /locus_tag="SB143_000328"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEF9748898.1"
                     /translation="MKNEMWSGRFSEASNELLKEFNASLNIDRALYVEDIQGSIAHAT
                     MLENCGILKKDELEAIVKGLEQVRVEIEQNRFVFNIEDEDIHMAIEKRLSELIGSEIG
                     GRLHTARSRNDQVATDFKLFTKKSHLELIMLLKELIQTLLSHARAHKRTIMPSFTHLQ
                     HAQPISFSFYILSYAFMFMRDIKRLQNSLELADFSPLGSCACAGTSYATNRNLSAQIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSASEFGFLTISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGLFDSV
                     KTAKDSLIILNAMLKEVKINEENMLKSCKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEKQGIDISDIEDLSKIDPIFDEKAMKLLDFENSLNSKQSEGSSSVASVEKQI
                     QILEKFLECLG"
     gene            complement(24480..26054)
                     /gene="pckA"
                     /locus_tag="SB143_000329"
     CDS             complement(24480..26054)
                     /gene="pckA"
                     /locus_tag="SB143_000329"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEF9748899.1"
                     /translation="MKKFENLGLENIKKVYHNLSFDELYEHEKKNEEGQCTDNGTFTV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQAITKELFDELLMKARKELSNKEIYVQ
                     DVFCGASLKSRKAIRFVTEIAWQAHFVKNMFIRPNDKELDEFKADFIVYNACKCVNKD
                     YEKNGLNSEVFVIFNIEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKGDVALFFGLSGTGKTTLSTDPKRKLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     SEPEIYGAIKRNALLENVVLRGDKSVDYSDASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIDKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITQCEFENFDVFNLAIPKTLAGVESSLLNPINTWKDKDEFIATRNKLAKMFSDNFKRY
                     EDVKEGVEYSQFGPKI"
     gene            complement(26063..>27745)
                     /locus_tag="SB143_000330"
     CDS             complement(26063..>27745)
                     /locus_tag="SB143_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEF9748900.1"
                     /translation="KEAGITHFEFGGGARFQSLYFYLNEDAFEMMDKFRSIVGKDANL
                     QTLARGVNTVTLDTGSKELIDLHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIKKYG
                     LKHEITITLMDLPPNCQGAHDVPFYERILKEILAAEIPFDSICFKDASGTSNPNKIYE
                     TIKMARKNLPQDVHIRLHTHETAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDIL
                     TMMHALKGKNYDLGGLEEEKILKYEAVLKDSLKEYFLPPEATMVSPLIPFSPMPGGAL
                     TANTQMMRDNNILDKFPEVIHAMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWEK
                     IAEGYGKMVLGYFGKTPVEPDAEVKKLAAKQLNLEPTTELAIDIADKDETKSIAYVKS
                     LLEKEGIAVSEENIFIAAACKEKGIAYLKGEAKVNVRKNVSAPKQNSTGIDENKFTVS
                     VNGNKYHVEISAGFDKDVNIKSIHKADTQEDIMQDADSSEGIQAGISGNVFKIYINEG
                     EEVKSGQVVMILEAMKMEIEVSAPKDGIIEKICVKTGDSVSENNLVAIYKNN"
BASE COUNT         9532 a         4823 c         3933 g         9457 t
ORIGIN      
        1 aagtatcatg aaggatttgg ccgctgaagg gcttactatg atagtagtta ctcatgaaat
       61 gggttttgcc agaaatgtcg ctaatcgcat ttttttcatg gataaaggag aacttgcagt
      121 ggatgcaaac cctaaagaag tatttgaaaa tccaaaaaat gaaagattga aagaattttt
      181 aaataaggtt ttaaatcact aaaaagcctt aaaattaagg ctttttaatc agtcccagca
      241 ttcagcattt ttaataccta gttttgaagc gctgaatttt ggatttattt tagagtcttg
      301 ttgggtgttg aaatctttca atactttatt gactataccc cctaaaagaa gtaaagaaac
      361 aatatttgta actgccataa acgccatagt taaatccgct aaactccaag caagttttaa
      421 attcatttga gaacctataa aaatcattgc tacagcagta attctaaaca aattcatgac
      481 taatttggaa tttgtaagat attttacatt agcttgggca taatagtaat tccctatcaa
      541 agaagtgata gcaaataaaa caatagctat agtaataaaa tggactccaa aaccgccata
      601 atattcacgc attgcttctt gtactaaagg cattgcggtt aaaagaggtt ttccatcggc
      661 tccaacatta aaatatgcca tagaaaaaag aaccaaaaat cctgaacttg tgcaaacaat
      721 aacatcaatc aaaaccgaaa acgcttgtat aataccttgt tttgcagggt gacttgtaag
      781 agcagcagcg gcagcatttg gagcagaacc catgcccgcc tcatttgaaa agagtcctct
      841 tttaattcct ataaccaaag cagaaccagc aaatccaccc aaaatcgctt taaaatcaaa
      901 agcactttca aatataagca ctattacaga aggaattttt tcaaaattaa tcaaaacagc
      961 tataaaggca agtaagatat aagctaatgc cataaaaggg acgattaaag agcttacttt
     1021 acctattttt gtatgatgtg aaaaaaaaca tccaaattcc aaaaagggtt aaaataatac
     1081 caataatcat aggccaagaa cttgaagcaa aatctgttgt agtattagga ttaaacatat
     1141 cataataaac tttaaaagcc gaagtcatag tttgactttg aagtccgtta aatccataag
     1201 cataagtaat aataagaata aaagcaaaaa aagctccaaa aaaatgagaa cctaaagctt
     1261 tttttatata ataagcagga ccacctttaa atcctcctgt attatcttta gacttgtaaa
     1321 tttgtgctaa agtgctttct gcaaaagctg aagcaccacc aaaaaacgcc ataaaccaca
     1381 tccaaaataa agcacctgct cctcctgcag cgatcgcgat agagatgcct gcaatatttc
     1441 ctatacctac cctagaagct gttgatatca tcaaagcttg aaaaggagat atgtgctctt
     1501 tggtatggtt ttcatttctt tcagttagaa ttttaaaaac ggattttaac atgcgaaatt
     1561 gtacaaatct agttaagaaa ctatagtaaa ttccgcagat tataagtaaa actaccatta
     1621 tagtatcagt atatggcaga acatattcga gaatttttaa tatcttttca tcgaatggaa
     1681 ctgaggggtt taaagttaaa ttttgctcac ccatatttct cctttaaaaa agtaaaattc
     1741 gctacaactt tagcatattt tttatgaaaa aatattgata atttacaaaa tatttaaaaa
     1801 aatataaagt taagtaagat tataaactaa aacgatcaaa attttgacgc aaggcttcat
     1861 aagaaacaat gccgacactt gtggccaaat ttaaacttct accacaagct ttcataggga
     1921 ttgtaatggc attatcccag ttaagctgca ttaattccat cggtaaacca tagctctcgc
     1981 taccaaaaaa taaaaaatca ttttcttgaa atttggcttg aaaataaaat ttattacttt
     2041 ttgttgtcgc aaagaaaaaa cgatctttgt aaatgagatt gtgttcaaga aagatatcta
     2101 aactttccca aattacaggc tcaagctttt cccaataatc aagccctgct ctacgcactg
     2161 ctttttgaga aatatcaaaa actatgggtt tgacaatatg caatttaaaa cccgcattaa
     2221 aacacattct acctatactg ccagtatttt gaggaattct aggatgaatt aaaacaatat
     2281 taaacatatt tacaccaata ctcttgggat atcaggatgg agttttacta aaatttcata
     2341 attgatagta ttgaaaaaat ctgcccaaac atctgcatta tcaaacacac atatttcctt
     2401 tccaaaatct tgacaagaaa aactatccat tgaaatttta cctaaaattt tttgtttatt
     2461 ggctagcaat aaatctccct tgccatcata acgaaacaaa ccatctgcat aacccaaatc
     2521 ataggtagct attttgattt tttctgtcgc actaaaagct ccaccataac ctacactttg
     2581 acctatttgt aattctctat gacttaatct atgagcatat aaacttaaaa ctttttttag
     2641 actttcatca ccataaccaa attgcgctaa gcctgttcta caaagctcat cttcgggtat
     2701 ttttacagct ctaaataaag ccggggaatt atgcgagtga aatatcaaat ttttataaat
     2761 ttgtttagca atatctttag ctttagaaaa tttttccctt tgaataaaaa aacttgcatc
     2821 catttcatct gcacctgcaa aatgtgtaaa tataccctct agcttcaatg cagaacattt
     2881 gattttcaac aaagcttcat ttaaatcctc aacgcaaact ccattgcgat gcattcctgt
     2941 gtctatttta agatgtattc ttgtatcgtt ttgataagca ttgattttat ctatatcatt
     3001 tagagcataa ataaatttag aattttcttt gccatgtgga tggtgagaaa gaattaaaat
     3061 attatcaaaa aaatcttcga gctcataagc ttctttttca tttttaactg ctataaaatt
     3121 aacgcccaaa gtactagcaa tcggagctaa aatttttgct ccatgcccat aagcattatc
     3181 tttaaaaaca caaatcaatc ttgaaaagct acctattttt tcagctataa tttttaaatt
     3241 gctttcataa gctttttgat tgattttaat taaagacatt attgttctgc taagattttc
     3301 atttttccct tgctatcaat tttaacatat aagattttat cccctttaaa ttgatagttt
     3361 ttagtataat aatcctcata aaatgaaatt ctatacatag tctcattttc tacattcgga
     3421 taagggctga tatttatatc cgaaaattta atctttttgt cttcttttct agaaaaaata
     3481 gactttttca tagaagcaaa ttgttcaaat ttcattttat caaaacgctt aaattgtttc
     3541 tcatcgtaga aatttaaata agtatttata tcgctatctg tccaagctag cttccaagca
     3601 aaaagatctg caagtaaagc agctatatct tcttttttgg cccttacttt ttctttttcc
     3661 tctgtcatag caaatacttt tttatcttgt actacttttg caaattcttc aagattttca
     3721 ttaaataagg ctatgcaacc acgcgtttta aattcatcca atcttgttcc atctaaagga
     3781 tagccatgta tccaaatccc tccgcctgtt ttgccttgaa ctttatcaag taaattagga
     3841 taagttgttg caaacgcaaa aggaccataa taaggatccc ctggattaaa tttgcgtcca
     3901 agttcataaa agcctactgg agtttttaaa tccccctcaa cttgtttatc ccccataagt
     3961 cctgtaatga tagctttttg ttcaaagtct tgtttaatct tcccatcact ataagaataa
     4021 acacggagaa ttttatctgt cttatttgta agcacaatag caacatcatc atcgtaatat
     4081 cctaaagaga tatttctatc gcctatttca tctaaccaaa aatctttatt tgttaattct
     4141 ttttcaattg ctacacctac agcatctaaa ccctgattta aataaatttt taccaaatca
     4201 gaagccccaa gagctgaaat gcatataaag taaaatgcta aaatcttttt aagcaatgct
     4261 tttccttaaa actgtattta taatattttt tgacaaaaat gtctgtgatt atattatttt
     4321 ttttcttaaa aaatattaat tatattaaat tttttgtaga atatcccaaa tcacgaaaaa
     4381 atcaatttta aaggcattgt tttattatca tgaaaaattt ttttatagca gcaatatttc
     4441 tgattatatt ttcattaacc ttttatattt tatatgataa aaaaaggata atgtgtttaa
     4501 actcaatacc tgccttccat taaaatatga tttaaattct caagattaca cctttttgtt
     4561 taaaggaaaa taaattttgg tatctgctta tcctaaacct ataaaaatct ttaaaaatac
     4621 cgccattaaa gtaagtaatt ttccctttga tccaaattta aaaattaaaa tttatagttt
     4681 aaactcatat ataggaaaca ttatcccaca atttacaaac acaaaggatt caattattat
     4741 aaattttaca ggaaaaagtg ttacagatga ttctcgcttt agggttgagt ttttaaacaa
     4801 tgataaaccc ataggctttt tctttgattt tgatgttact ttgcaaaaaa tatacaatag
     4861 tgcaatcttg cctcaaaatt aaatttaata aaaaatttca ttttttaaaa aaataattga
     4921 ttattttctt ttgttttgat ataattaata attatttaat actaaaataa taaggataaa
     4981 acatgaaaaa aattatcact ttaagcgctt tgcttgcatt aagtctttat gctaaagata
     5041 tagaaatcaa agatgcattt attaaacaaa ctccacctaa tgctgttaat agtgctatat
     5101 ttcttaccat tgttaacaat accgataagg acatctcttt aatagatgca aaaactgata
     5161 tcaatcaagt gagcgaatta cacactcatg aacataaaca tggtatgaaa gctatgatac
     5221 aaattcctga gatacctgtt aaagcacatt ctagtaccga gttaaaacct ggaagttatc
     5281 atattatgct ttttaagctt aatcaagcta ttgatgaaaa tactaaagcg aatttgactt
     5341 taacttttga caataatcaa agtttagaag ttcgtgacat aggatcaaaa aagttataga
     5401 taatgaaaaa aatatttttt attttggcct caggcctatc tcttttaatt ctttatatca
     5461 tatttgattt ttatgtttta aaagatagaa cgactttaag tcaaactgag gttttatcac
     5521 ctctaagctg tgatttaaat atcgaaaatt gcacttatag ttttaaggat agagaggttt
     5581 tgatttctat ggatccaaaa cctctccaat ccttagaaat caccaattta aaaattaaaa
     5641 atttaggaaa ttataaaaat ttaaaaatta aaatttatgg cttaaatatg tttatgggag
     5701 atataatgcc tagagttact aaaataaatg aaacagatta tgagtcaaga ttggttttag
     5761 ctgcatgtgt tcttgaagtt atgcgtttta gagctgaagt ttttgaagat gataaaccta
     5821 taggttttca ttttgatttt gatctaaaaa gatgaaaaag gtttttttat ttgcagtcgc
     5881 ctttgttgcg atgggtatac tagctttttg tttgataaat aaaaaccaat acgactttaa
     5941 tctaagatct gcctttaaag agcaaactac tttagaggat tttaagggca agaaacttat
     6001 agtttatttt ggttatactt tttgtcctga tatttgcccc tctactctct ctttaatcgg
     6061 taaaaattta aaagccctta aagatccaaa agctcatgtt ctttttattt ctttagatat
     6121 ttctagagat ggtaatttaa cttcaactaa cgaatggtta agatattttt atcccaatgc
     6181 ggacgctctt attgcaaaaa atgatagcgt tttaaagaaa gtggctaaaa attatggagt
     6241 tcaatatcaa aaaatagata tcaatgattc tgtgatgaaa tattccgttg cgcatagtag
     6301 cgaaattttt ctcatcgatg aaaacggaaa gctacaaaag atcattagag atttgaatcc
     6361 tgaagaagtt gcaaaagagc ttaaaaattt tctaagctct aaataaaatt tttaagcaaa
     6421 aagatcggtt gaaagatatc tttcagctgt atcatttagc atagtaagaa tttttttatc
     6481 tggaaatttt ttagccaaaa aacttgctgc aaacacattt gcaccacttg aaattcctac
     6541 cataagaccg tttttagcaa gctctttagc tgtatttata gcatcttcat tgctaactgt
     6601 gatgatttca tctataacat ctttatttaa gatagcaggg ataaaatttg cacctatacc
     6661 ttgtatctta tgacttccag cttcaccctt actaagtagc ggagaggcta aaggttctac
     6721 agcaacgaca tgaatttttc ctaatttttc ttttaaaatt tcaccaactc cactgatagt
     6781 tccacctgtt ccaaaacccg ctacaaaaat atcaagatca ttatccaaat cttttaatat
     6841 ttctaaggca gtagttttgc ggtgtgcatt tttattggcc aaattgtcaa actgcgatgg
     6901 cataaaagaa tttggggtat tttttaaaat ttcattagct ttatccactg cacctttcat
     6961 acctaaactt gcaggagtta gttcaagttg tgctccaaaa agagttatca ttttgcgtct
     7021 ttctatactc atagattctg gcatagtggc aacaaattga agtcctaaat ctgcacaaat
     7081 cattgctaat gcaatacctg tatttccgct tgtagcttcg actataacag tcttagaatc
     7141 gattttgccc tcatttaaag cgctttggat cattgcaaaa gctgctctgt ctttaattga
     7201 atgacttgga tttaaaaatt cgcatttagc aaaaagattt gcaccaaatt tctctaattg
     7261 tattatagga gtattgccta taagttcatt tactttttta taaactctca taaaaccaac
     7321 ctttcaaaaa tttagtttca agtaagttta taaaaataaa gtaaataaag gatataaatt
     7381 gtcggattaa tttaaatttt ttatttaagc agggctagaa aaatttctag ccttaatatt
     7441 attttttctt tttagctttt gcaacagcgt ctttaaggtt tttacccact ttaaatttag
     7501 caactcttgt tgcaggaacc ttaatggttt taccagtact tggcactctt gcttctcttg
     7561 cggctctttc ggctgttgag aaagtaccaa aacctataaa gctaacgcta tcacctttag
     7621 ccaatacatc agtgatagta gaaataactg catcagtagc agcagtagca tctttttttg
     7681 ttagcccagc agtttgagca acttgcgaaa tgaaatctgc tttagtcata aaagctcctt
     7741 tgttttatat tgaaacgcct aattctagca tatttagaaa acaatatcaa gtaaaaacat
     7801 gttttttagg atttttttgc attttatagc gctcaaattc cccactattg tcaatttcat
     7861 tgcctatttt ttcatataga tcatagtaga attgaacaaa ttctttgcat tctggataaa
     7921 gaggcataaa aatatcgttt tctaaagcac aaaaacgatt taaaaattct ttagcatcaa
     7981 gctttaaagc ataatgttta gctaaatcat gataattttt taaagttgca tctttaaaat
     8041 tttcataata ttccagatta aaattaacat ttaatctatt gttttcaaat ttcaaaactc
     8101 cactttgaaa taatagtgat aaatgaataa gtccttctgt ataataaggc ttaacctctt
     8161 caactctttg ccaagctatc aaagatacag ctcttttaat aagttcatga aaaacaggta
     8221 atttcaaatc ctcttgttca tgataaaaga aattaacaag tccgccactt gttgccttat
     8281 attcttcgat atttttaaaa aaaccacttt gattcataag tttttcactg tctttagcga
     8341 taaaaaatat atgaccaaat tcatgtccta tagtagaaac ctcataaact cttttccaaa
     8401 ttttttcttt gaaaaataaa atatctcttc cataatccaa aaaatcttta ttaaaaattt
     8461 cactagcaat tctcataaaa ggttttgttt tagcattttc atagacaaaa tttaaaaaag
     8521 caaagatttt tttgcctgca atagaactta caaattcatc attaggaaca acttgcgcag
     8581 aaaacaaacc cttaagctca gctccataat aaatcatcgg tgcgcaaaca taaagctgtg
     8641 ttttatcaat attatgcaaa acttcatttt taagttgctc atcttgaatt ccgatatttt
     8701 catatacgcg cataaagctt tgcttgatat cttttgaaaa tttcaaggca tcaaaatcac
     8761 tctcatcttc tattcttata tcccactcta aagctacagc atgagtgtaa ttatcttcat
     8821 agtattctaa aggatgacct acttgtaatg gagatttgac tttcatccat gcaaattcag
     8881 cctcttgcca cgctcctata accttttctt cttccttttc acaaaaagct agttttagct
     8941 tttgaaaata ctctatataa gctaactcat cttcattttt agctatttgt tttaatttat
     9001 caatcatatc atcaaaagca aattcgagtt ttaaaatttc atcttcaaaa aatcttgcat
     9061 aaggaacaaa tttccacata tttcctattc ttaccaaaac accatagctt ctttcgcaaa
     9121 tatcaccctt tggagttgtt tgatagagtt gattttttcg taaaaattcc atcgcatcgt
     9181 ttaaatttgg aaattgagtt gctaaaattt tattgttttt ttctataatc tctttagtcc
     9241 aagaaacttc aaaagcattg ataactaagc ctatattatg cactccttgg ataagaactt
     9301 gataaaaatc atttacgatt tttctttctt tgatctcata gattagctct tgatgctctt
     9361 tttcataaaa ttttcttatc tcttcataga atttatgctt aagcttggta attttttctt
     9421 ctttgaaatt attttttttc cactcctgta tcaaattttc ctctttaaga tctactaagc
     9481 gtcttaatat agccaaaaga gttgttttat ctcttttcaa ctcactaaga gttaaaagtc
     9541 tctcaaaata ctcgccccat tgctcagaat ctaaaagatc ataaaaaaga ttgatatttt
     9601 ctttacgatt ttttacaagt tttgctaatt ctttgaaatt attcatactt ttattctcct
     9661 tttttaactt tattgaatta taattcattt tttaaaataa ggagtaaaaa atgagagata
     9721 tgggagaacc aaaattaaaa attgttgcaa tgccaagtga taccaatccc gcaggtaata
     9781 tttttggtgg atggatactt tcacaaattg atttagcagg cgcaatagca gctagagaac
     9841 tttctcctga acgcgtcgta actatatcta tggataaggt agtttttaaa gagcctgttt
     9901 ttataggtga tataatttct tgctattcta agattgttag cgtaggaaag acttctatag
     9961 gtgtagaagt agaagttagt gctcaaagag tggattcaca aggctgtact tcttgcataa
    10021 acgtaacctc tgccttagtt acttatgtta gcgttacaag agaaggaaag aaaaagccta
    10081 ttagtgaaga attaaagaaa attcatggat ttacaaatac ttaaagctta attttttgta
    10141 tgataaaaac tttatccttg ttaagcttat cagcatttat ttaaaccgcc gctgttatat
    10201 tttttatcta aacattcctt gaaaaattct cctctagttt ttggggtttt ttcaggatgt
    10261 ttgtgtttca tgtgttctaa atacttatca taactcgaaa gtcccactaa gggatgaaaa
    10321 aacctttcgg ctttttcata gtagtgttta aactttttga aattcattaa gtttaatata
    10381 tttggtttct tttagtggaa ttttaatctt acctaggcaa attcctatgc aagagagtat
    10441 gacaagcaat gtggccaaca tgaaaaacac acaaagaatg gcattgatta aatttccgat
    10501 cttactttga gtagctacgg aaatttcttt ttcaattgct gcaatttcat tttcatcttt
    10561 ggcattgttt aatttcaatt ctaaatcttg aattttttga ctttgtatag taactgctgc
    10621 cacatggctt acagcatttc ctactttatt tccttcttcg taaggcataa ctttttgtat
    10681 tcctccatat agggttgcta ccaaaacaaa tgtagcagga attaaagtta cccaagtgta
    10741 ttttgccttg cccattttta caagtatggc tgtagcaaga agtaaagcca tacctgcaag
    10801 catttgattg cttacaccaa agagaggcca aagggtataa ataccacctt taggatcaat
    10861 cgcaccttga taaagaaaat atccccatcc tgcaacactc aatgcggttg ctaaaagtcc
    10921 agctggataa ttatgaatat ttcccaaagg tttatagaca ttacctaaga tatcttgcac
    10981 cataaaacgg caagctctag ttccagcatc cacagctgtt aagataaata aagcttcaaa
    11041 caatatagca aaatgatacc aaaaagccat tagatcaata ccaccaaaaa gctcatgtaa
    11101 aattaaagct acgcctatag caaaagttgg agccccacct gttctagaaa gtatagtgta
    11161 ttctcctata tttgcagtta aagtagaaat ttcttcagga gtgatactaa atccccaact
    11221 tgaaatagct tgcgccgcac ttgcaacatc agatcctatt aaagcagaac ttgaatttat
    11281 agcaaaataa agtccaggat gtaaaataca agcacaaatt aaagccataa ttgctacagc
    11341 actttctgca agcatagagc catatccaac aggcaaagca tgagtttcat tttcaagcat
    11401 ttttggagta gttccacttg aaataagagc atgaaaacca ctaatagcac cacaagcaat
    11461 ggttataaac aaaaatggaa aaatagcacc cgcaaataca ggacctgttc catcaaaata
    11521 ctgagcattg gtttttggca tttgcaaatc aggtgcaacg ataataatag ctacagccat
    11581 tacaacaata acaccaatct ttaagaaagt agaaagataa tctcttggag ccaataaaaa
    11641 ccatacaggt aaaacagctg cgataaagcc ataagccatc ataataattg ccaaagttgg
    11701 agcttctaat gtgaatattt tcgcccaata aggatcagca gctataacac taccataatg
    11761 aatcgctaga atcaaaagta taaaacctat aactgaagcc tcacctactc tacctggacg
    11821 aataaagcgc atatatactc ccataaaaat tgctatagga atagtcattg caatggtaaa
    11881 taatccccaa ggtgactctg cgagagcttt tacaactacc atagctaaaa tagcgatgat
    11941 aataagcatg ataccaaaaa ttgctaccat tgcaacacca ccggtaaatt tacccatttc
    12001 atctttgata atttcgccta aacttctacc tcttctacga gtggatataa aaagcacaac
    12061 aaagtcatga accgcacctg ctaaaacacc tcccactaaa atccaaagca tagaaggtaa
    12121 atatcccatc tgagcagcca aaataggacc cactaaagga ccagcacctg caatagcagc
    12181 aaaatgatgt ccaaacaaaa ctgttctatt tgtaggaaca aaatcgcgtc catcattttc
    12241 taaaactgca ggtgtagcac gatttttgtc aagttctaaa accttatacg ctacaaagcg
    12301 tccataaaat ctatatccta tcatatagat acacacagca gtaactacta gataaattgc
    12361 tgatacactc tcgccatttt gtaaagctaa atgagcaaaa caaatagcac ctaaagctgc
    12421 gacaaacaac cataaaattt tagttccaaa acgagccata gttctcctaa aataataaaa
    12481 atatttcaaa ggataccaaa tttataaata aatttaataa aatgtttgtt tagttttttt
    12541 acatcgtata aaaaaatatt ctttttgttt ctttaagtga cattttcaaa aaaataaaca
    12601 tgcaatcttg tattattttt tatgactatt tttaagacaa gttttattaa agttaaaaat
    12661 atttatagaa tgttgcttta ttttgttaaa agtttgcttt tattttttaa gtcgttatta
    12721 tatttaaaga tgcactatca aatatttttt gtcattagta aaagtaaaaa aatcatagaa
    12781 ctatcaaaga gatagttctg atttatttta tattaatata agatatttaa aaaaatatag
    12841 aaaattaaat aaaaagagaa tttacacttt cattgtggta aacgcggcgt attacttcag
    12901 caaatacagg agctacgctt aaaactttta tattaggcaa ttgctctctt aaaggaatgg
    12961 tatcagtaac tacaagctca tcgagcgccc ctgaagcaat tctttcataa gctttaccac
    13021 ttaaaaccgc gtgagtacaa caagccataa cggattttgc acctttgttt tttaaagctt
    13081 cagcagcctt tacaatagta cctgcagtat caataatatc atcgactaaa atcacctctt
    13141 tatctttaac atctccgata atattcataa cttcgctctc attagctttt tcgcgtcttt
    13201 tatctactat cactatatca agtcctaaat ttttagccac acttctagct cttgctacac
    13261 cccctatatc aggacttcca acaattgcat ttttaaaatg cttggttttg atataatcat
    13321 taaatactat acttccataa agattatcaa caggtatatc aaaaaaacct tgaatttgcc
    13381 ccgcgtgtag atcgatagta gccacacgat caatccctgc tgcttcgatt aaattggcaa
    13441 caagtttagc agtaataggt acccttggat ttgcttttct atcttgtctt gcataaccaa
    13501 aataaggaat aatagctgta atagaatttg cacttgagcg tcgcaaagca tctgttaaga
    13561 ttaaaagctc cattaaatta tcattggtag gtacacaggt gctttggata atgaaaacat
    13621 ctttaccacg tacgctttca tcaatttgaa cgctaatttc tccatcgcta aaacgcttta
    13681 ctccagcatc acttaaaggc aaagaaagat atttagaaat ctgttttgca aattctacat
    13741 tagccgaacc tgaaaaaatt ttataaccgc gcataaaaga ccttttacta aataatatta
    13801 aaataagatt ttaataaaat aaaatttaaa aaatgctgta aattccattc tcttttaatt
    13861 aaaatacata ttttctaaga aacataagcg gtttttttag cataatatct tacaagcatg
    13921 gataatgaaa agcatatagc aaaataaatc acagcaacaa aacctatagt agctaaaatt
    13981 tcatcaaaac tcgtaagtct agccaaaata tttttagaat tataagtcag ttctgctatt
    14041 tgtaaacccg ccaaataggc cgtatctttt acagtggtaa caatctgaga aagcaaagac
    14101 ggaacaacct ttctaaaagt ttgaggtaaa ataatataaa aaagagtaaa aaatttacta
    14161 aatccttgag aataagctgc ttcaaattgt ccttttggaa tagaatttaa accaccacgt
    14221 ataatctcag ccataactga acttgtgtat agcgaaaatc ctatagttcc ccaaaaagct
    14281 tgtggcattt gtggaaaaaa tgatggcaaa acaaaacaag cagcaagcat ccataaaagc
    14341 aatggagtat ttctaaatat atcaatgtaa caagttgcta ataacctgct gaatctatct
    14401 ccataatttt tagtaatagc taaaaaagtt ccaaaaatga tagatataat acaagtcgcc
    14461 aaggcaattt taagggtaag gactagacct tgcattaaaa attcaatatt ttgagcatta
    14521 aaaacatttt ccataccaaa ccccttatct tgttaaatga gctttcttaa gcttgtcttc
    14581 gtaaactttt gcaaaatatg ccaaaggata acaaatgata aaatataaaa tcgccgcaaa
    14641 aatatatgca ggtgcgtaat ttccatagtc agcagcataa ctatctgcag aatgcataag
    14701 ctctgctcca cctataatca ataatacaga agtattttta atcaaattta ccatttgatt
    14761 tgtcataggc ggcaggataa tttttatagt ttgtggaact ataatataac gcatttgttg
    14821 tacataggta aaaccttgag aggctgaagc ttcgaattgt cctctaggaa cagataaaat
    14881 tccacttcta actacctcac ttacataagc accatgataa gcacctatac ccaaaacacc
    14941 gatggtaaaa atatcaagat gaattcctaa gccaggcaaa gcaaaatata aaaagaaaat
    15001 ttgtattacc aagggaatat tttgaaaaag ctcaacatac actcgagtgt aggctcttag
    15061 gattttaatt ttacttgtgg ccatcacacc acctatagtt ccaaaaacaa tcgctataag
    15121 taatgcaaga atgctcactt ctaaagtata aataaaaccg ctaataaaag catctccatt
    15181 gtccaaagcg tctagaaatt tccaaattgc aaaaggattt gtactacttt catcatacaa
    15241 accccaagaa ctaaggagtt gccttaattt atccacaaag cctacactct cattcatttt
    15301 ataaacccca ttttttagct aaagcgtcga tttcagtttt gttttgtttt acaaaatcat
    15361 tgacataatt tgaaaaattt gcatcatctt tttttgtaac tatgccataa ctttgagaat
    15421 cgaaactatc aggtaaaatt tcattattct catctttata acctagtaaa atagatttat
    15481 caactgaaaa cgcatcaatt ctttttgcat ctaaagctgc ttttatgcta ggataatcag
    15541 gaaattcgct gaattttact ttaacaccta tttttttagc cgcagtattg ataacttttt
    15601 tagtagttgc tgcttgagct acccctatag tagcaccatt catatctgct aaagatttat
    15661 aatttttctc ttttaaaact aaaagcccta cagcatcttg ataatacggc tctgaaaaat
    15721 tatacactct ttttctctct ggagtgatag taaaagttgc tataaccgca tcaacgctac
    15781 cattatcaag taatggacct cttgttttag catttactgc tataagttta actttatttt
    15841 catctcctaa aatactctta gcaagcattt tagcaacatc aacttcaaag cctttaattt
    15901 cgcctgtagc ttgatcaagt aaagcatagt gtggtacatc attttttaca cctataacca
    15961 actctccttt agccttgata gcttcaagtt ttccttcagc tgcatttgca ctagtaaaag
    16021 ccatacaagc tcctaaagca agtgctgcta attttaataa agaatttcta aaaaccattg
    16081 ttctctcctt ttaaaatttg gtttaatttt taagaatttt tcctaaaaag agtcttgctc
    16141 tttcagtttt aggattggaa aaaaactcac taggaacatt ttcttccaca atagcaccat
    16201 cttccatgaa aataattcta tcggcaactt ctttagcaaa acccatttca tgagttacca
    16261 caaccatagt tgtatttctt tgtgtagaaa tttctttcat tacatctaaa acttcttgta
    16321 tagtctcagg atcaagtgct gaagtaggtt catcaaacaa gatataaggt tttttagtac
    16381 atagcgctct tgcgatagca acacgttgtt gctgaccacc tgaaagcgtg gctggataaa
    16441 catttgcctt gtctacaagt ccaaccacct taagatattg ataggctgtt tcttcggctt
    16501 cttggcgtaa ttttttttga agtttcatag gagctaaagt taaattttgc aaaacagtca
    16561 tatgaggata aagattgaaa tgttgaaaaa ccatagcaca atatttccta caaatttcaa
    16621 tcttattttt atgatttaaa acaagattat ttacaacaac ttcacccgaa ctcacctctt
    16681 caagtccatt catgcagcga atagtagtac tttttccact tccgctaggg cctatgataa
    16741 caagtttttc accttcttta acacaaaggt taatattttt aagaacatga tgggttccat
    16801 aatatttatt tacatttctt aactctatca aaatctttcc ttttttgatt aaacttaaaa
    16861 attaataata acaagggttt attatattga caatattata gcaccaaaat caaaatttaa
    16921 gctaaaaata gtaactttat tttagcgaag atataaaaaa gtgtaacttt ttgtaaaatt
    16981 taagaaaata taatcaaatt ttttcatagt acacacctcg aggtgaaaaa actttcttaa
    17041 aaaatgtggt ttcaggaatc aaatcggcat tgcccacata caacctaccg ttatcagcta
    17101 aaatttgata aaaacgctcc attaatttaa ttctagaatc atagtcaaaa taaatcatca
    17161 tgttcctaga gacaataata tcaaatttac ccagtcttaa aaatttatct tcaaaaacat
    17221 tacataattc aaatctacat gtgcaaagct cgcttttatt aatgctaaat gtttgctctc
    17281 caatatctgt gaaaaatctt cttttttcac tttcgcttaa acgctgtaaa gttctacctt
    17341 gatatttacc cacctttgct ttttcgatga catttgaatt tatatcaatt cctaagatca
    17401 tcatatcctt aaggaaattt tgagctccca aaatcgccat agaatacacc tcttcgccac
    17461 tagaacaagg agcacttaaa atatttactg ttttttcaag acttttagca taaaaaataa
    17521 tttcttttaa ttgcgacaat tctcttaaaa agtatgtttc ccctatagta acaaaatcta
    17581 aagtgtcttg tctaagctgt ctatttattt gaagtttgct taaaaattca gcaaaggttt
    17641 ttacacccgt acttgaaaca aattttgata attttaaaac taaaatattt cttttttcat
    17701 ttaaatctat accgctgatt tcattaataa tcttaataaa ttcattaagc tctaattcgc
    17761 taggattaat tttttcttcc ataaatttaa accctcattc ttcatttata aaatttaaaa
    17821 tttcttgttt aatttctttt aaactcatag gccttagttt tggatttata tcttttgctt
    17881 tttttggcat accatataca atactatcag cctcattttc acacaaacat ttaactccta
    17941 ctttatacaa ttcaaacaat cccttagccc catcatctcc catgcctgtt agtattacag
    18001 ctaaaatttt gtttgtcttt accaaaggta cagctgagtg aaacaacaaa tctacatttg
    18061 gtttaaagct tgtgacaact tctttccagt ttgccataag atttaaattt cctgataaaa
    18121 tagtattttt ttgacaaata taaattttat ttgccaaaac ctctttgtcg tttaaaagac
    18181 ttacttcgct taaggcttct ttattaaact gatttacaaa agaaggtata aaacttgcac
    18241 tcatatgttg agctataact acgcaagtat tttttatatc cacatctttt aataaaaact
    18301 tcagctgatt agggcctccg gtagatgatc ctatcaatag gagtttcatt taattttcct
    18361 tctatttgtt aaaatggatt aaaattctta aaatgtatat tgtaacatat atacaaaaaa
    18421 taaagcttag ttttaaattt attttgaaaa caaaaagctt tttttatgat ttgttatgtt
    18481 aatatagatg ctttaatttt taaattttgg attttttatg cttagaaaaa aaatttatat
    18541 tgctagcgat catgcgggtt ttatgcttaa agaaaaaatt tgtacctttc ttaaagaaaa
    18601 gcaaattcct tttgatgatc ttgggacaaa tgatcctact agttgtgatt atccagatta
    18661 tgcacatttg ttagcttcta aaatagatga acaaagcttt ggaattttaa tttgtggttc
    18721 agggatagga atttccatcg ctgctaatcg tcataaaaac attcgctgtg ccttatgtaa
    18781 tgaaagcctt agtgctaaac ttgctagaaa acacaatgat gcaaatgttt tagcttttgg
    18841 aggtagatta ataggcattg atgcagctat cgatatgata gaaaatttta ttcaaacccc
    18901 ttttgatcaa ggtagacatg taaaaagaat tcaaaaaatt gaggtagatt gttaatgttt
    18961 gcaaattggt ttattttaac tgcacttatt tgtgctacta tttatctagt tgttatgttg
    19021 ttttattata aaaccctgct taataaagaa aaaacttcaa aagattttat aaaaaacaat
    19081 cttgatgata ctgaaatagt cattagaaaa ctacaaattc aacttcaacg cagtcttggg
    19141 aatatcgata ttttaaccga agagctcaat aaaataaaag cggatttaac ttctctaaga
    19201 acaagaaatt ctcaataccg tttagaaaat gataaactaa gacaaagaat taaagagcta
    19261 gaagcaaaaa tcgaggcatt attatgacaa aacttacaca aaacgaacag caatttttat
    19321 cagaaagcat acgcgttatt ccaaattttc caaaagaagg tattatcttt cgagatatta
    19381 caactctact taacaatcaa aaagccttat cttttttact ggatcattta agtaagcgtt
    19441 atcaaactat gaatttagat tttatagcag gaactgaaag cagaggtttt atttttgcgg
    19501 caatgatttg tgctaagcta aatttacctt ttgttcctat acgcaaaccc aataaacttc
    19561 catcaaatac ctattcttgc gagtatgaac ttgagtatgg gacagataga gtagaaattc
    19621 atcaagatgc atttagaaat ataaaaaatg caaaaatttt gcttgtagat gatcttatag
    19681 ctacaggtgg gacagcactt gcctcttttg aacttattaa aaaagcagga ggagaatgta
    19741 tcgaggcttg ttttttaatg aatttgaaaa acttaggcgg tgaagaaaaa ttacaaaagc
    19801 attgttctgt atatagtgtt ttagaatttt aggagggtgc gatgagaaaa tggtttaaat
    19861 tttttatctt tatcgtttta attgctctaa taatttatgt gattcatggt ttggttaaaa
    19921 atgatttctc cttggaagaa tttattataa gaatttggaa tgaacatgtt gaaacttggg
    19981 gctacttgat acttttttgc tggagtattt tagagggtga gcttggactt atttttgctg
    20041 gacttgcagc ccatgatgga aaaatgcatg tagtattagc tatatttata gctggcttgg
    20101 gtggctttgt tggggatcaa atttattttt atataggaag atataacaaa cgctatattc
    20161 aaaagaaact ccgttcgcaa aggcgtaaat tcgccgtagc gcacttactt ttacagcgtt
    20221 ttggttggcc tattattttt atacaacgct atatgtatgg ttttagaact gtaatcccta
    20281 tgagcatagg tattacgcgt tatagtgcta aaaaatttgc cattatcaat cttcttagcg
    20341 cttgggtttg ggctgctatt accatacttt tagcttggca ttttggtaat ttaatccaga
    20401 attttttaac ctgggctaaa aatcattggt atttagctgc tattatgata atatgttttt
    20461 tatctttact tgttttcacc tttaaacaaa ttgaaaaagc tatacttaaa gaaaaaagga
    20521 aaaaaaatga tatttgaatt aagtgataaa aaaattcatg gtataaaagc agattttgaa
    20581 cttgttttta tacaagataa aaatctaaaa ccattcacaa atgaaaaaga tttttttaaa
    20641 ttaaataact atacaggcga gggaatttta ctcgatttaa acaataaaag attatttata
    20701 gaacttaaaa gtttaaatta tgaggatata agattagcac tttacactgc ttataaaaat
    20761 ttagaaaaat taaacattaa aagcgtaaaa cttcctagca tattaggtga ttgcgttgtg
    20821 agaagtttta cttctttggt tgagggtgtg ctttttggag cttataaatt tgataaatac
    20881 aaaagcgaaa aaaaagaaag cactttagaa aaatttataa tttctgccga agaactaaat
    20941 gctaaaaaat ttaatctcga tgaagcaaaa ataggtcttt tacgcggtga aattctagcc
    21001 aatgcgacaa attttgccaa agatatagtt aatgaaattc ctgaaattta tactccttta
    21061 aaaatggcgg aagatgctca aaatttagct aaaaaaaata aaaatatcac atgcaaaatt
    21121 tgcgatgaaa aatttcttgc taaagaaaaa atgaatgcat tcttagctgt caatcgtgct
    21181 tctgcccatc cgccgcgtct gatccacctt agctataaag ctaaaaatgc taaaaagcgt
    21241 atagtatttg taggcaaagg cttaacttac gatagtggtg gcttgagcct aaaacctgct
    21301 gattatatgc ttactatgaa agcggataaa agcggagctg cagctgcgat gggaattatt
    21361 aaagcggttg ccgagctcgc tttagaatta gaagtacatt gcatcttagg tgcaactgaa
    21421 aatatgatag gtggaaacgc ttataaacca gatgatgttt taatttcgcg cgaaggcgtg
    21481 agtatagaag taagaaatac cgatgctgaa gggcgtttgg ttttagctga ttgtttatct
    21541 tatgctcagg atttaaaacc tgatttactc attgatatgg cgactcttac aggagcttgc
    21601 gttgtggggc ttggggaatt tacaagtggt attatgggaa ataatgaaga attgcaaaat
    21661 gaattttatt taagctctaa aaaaagtgga gaatatacaa ccatactaca ctttaacccg
    21721 catttaaaag aacttataaa gtcaaatatt gctgatgtta gtaattctgc ttctagtcgt
    21781 tatggtggtg caattacagc tgggttattt ttagataaat tcatacgcaa agaatataaa
    21841 gataaatggc tccaccttga catagcagga cctgcttaca tagaaaaatc ttggggctat
    21901 aatagctttg gtgcgggtgg aacaggagtt agaatgtgtg ttaatttttt aattcatctt
    21961 ttaaggaaaa ataaatgagt ttaagcgtcg gtatagtagg tcttccaaat gttggaaaat
    22021 caactacttt taatgcctta accaaggcac aaaatgcaca aagtgcaaat tatccctttt
    22081 gtaccataga acctaataag gctatggttg aagttcctga tctaagatta aatgaacttg
    22141 ccaaaattgt aaaacctgaa agaattatgc attcattgat agaatttgta gatattgcag
    22201 ggcttgtaaa aggtgcgagc aagggcgagg gattgggaaa taagtttctc tccaatatac
    22261 gtgaaacaga agtaatttta cacattgtgc gatgttttga tgaagaaaac atcacccatg
    22321 ttgaaggagg cgttgatcct ttaagggatg ttgagatcat taatacagag cttattttag
    22381 cagatataga acagcttggt aaaaaaatag aaaaactcaa taaagaagct agagcaaata
    22441 ccaaaggtgc aaaagaaagt ctagaaatgg caaattcttt gcttgaacat ttaaataaag
    22501 gtcttccagc tagcacctat ttgcaaaaag aagatgagat ttttcaagct ttaaataaag
    22561 agctaagact tctttctgcc aaagaagtga tttatggggc aaatgttgat gaaaatggta
    22621 ttagcgaaga taacgagtat gtaaaaattt taaaagacta tgctaataag aacaatcacg
    22681 aagttatcaa gctttgtgct aagatagaag aagaattagt tggcttaagt aatgaggaaa
    22741 gtgctgaatt tctaagctct ttaggtgtaa atgaaagtgg gcttgatcaa atcatacgca
    22801 ctgctttttc taaacttgga ctcataagct attttacagc aggagtttta gaagtgcgtt
    22861 cttggactat taaaaaaggc tggaaagctc caaaagctgc tagcgtgatt cataatgatt
    22921 ttgaaaaagg ttttatcaaa gcagaagtga tttcttatga agattttatc acctacaaag
    22981 gagaaaatgg cgctaaagag gcgggaaaat tgcgtcttga aggaaaagat tatatcgtct
    23041 tagatggcga tgtgatgcac tttagattta atgtttaggc aaaattagcc taaacattca
    23101 agaaattttt ctaaaatttg aatttgtttt tctacactag caactgagct tgaaccttca
    23161 ctttgtttag aatttaaaga attttcaaaa tcaagcaatt tcatcgcttt ttcatcaaag
    23221 ataggatcta tttttgaaag atcttcgata tcacttatat caatcccttg tttttcagct
    23281 tgtgcgacca cattaccgac tataaaatgc gcttttctaa aaggaatatt tttttctcgc
    23341 actaaataat ctgccaaatc tgtagccaac aaatgccctt ttttgcaaga ttttaacata
    23401 ttttcttcat tgatttttac ttcttttaac atagcattta aaataatcaa actatctttt
    23461 gctgttttaa cactatcaaa aagtccttct ttatcttctt gcatgtcttt attgtaagct
    23521 aaaggaagtg ccttcataat cgttaaaaga gaaatcaaat ttccataaac acgccctgtt
    23581 tttccgcgta taagttcgca aacatcggga ttttttttct gtggcatgat agaacttcct
    23641 gttgaaaaac tatcgcttat ggttaaaaat ccaaattctg aagcagaaaa taaaatcatc
    23701 tcttcgcaaa gtcttgaagt gtgtgtaaaa atcactgcta tatcataaag taaatcaagc
    23761 gcaaaatccc tatcgctcac tccatccatg gcatttggca taatgtcttt aaagcctaaa
    23821 atttgagcgc taagattgcg atttgttgca tagctagttc ccgcacaagc acaagaacct
    23881 agcggggaaa aatctgcaag ctctaaacta ttttgcaaac gcttgatatc acgcataaac
    23941 ataaaagcat agcttaagat ataaaaagaa aaacttatag gttgtgcatg ttgcaaatgc
    24001 gtaaagcttg gcataatagt tcttttatgc gctctagcat gagaaagtag agtttggata
    24061 agttctttta aaagcattat aagttctaaa tgggactttt tggtaaataa tttaaaatca
    24121 gttgcaacct gatcattgcg actgcgagct gtgtgaagtc ttccgcctat ttcacttcct
    24181 ataagctcac ttaaacgctt ttctatagcc atatgaatgt cttcatcttc tatattgaaa
    24241 acaaagcgat tttgctctat ctcgactcta acctgctcta aaccttttac aatagcctct
    24301 agctcatctt tttttaagat tccgcaattt tcaagcatag tagcatgagc aatagaaccc
    24361 tgtatgtctt ccacatacaa agctctatct atatttaaac ttgcattaaa ttcttttaag
    24421 agttcgttac ttgcttcgct aaagcgtcct gaccacatct catttttcat caatgcgcct
    24481 taaattttag gtccaaactg actgtattct acaccctctt tgacatcttc atagcgtttg
    24541 aaattatcgc tgaacatttt tgctaattta tttctagtgg cgataaattc atccttatct
    24601 ttccaagtat tgataggatt taaaagagag ctttctacac cagctaaagt tttaggaata
    24661 gctaaattaa atacatcaaa attttcaaat tcacactgtg taatacttcc atctaaaata
    24721 gcattaatgc aagctctagt agcctttata ctcattcttt tgcccacgcc atagcttcca
    24781 ccgctccagc ctgtattaac aagataaaca tttacttcat gtttgtcaat tttttctcca
    24841 agcaatcttg cataaactgt tggatgcaaa ggcataaaag gctcgccaaa gcaagctgaa
    24901 aaagtagctt gaggctctgt aatccctctt tctgttccag ctacttttgc tgtataacca
    24961 cttaaaaaat aatacatagc ctgctctttg ctaagtttgc ttacaggagg taaaattcca
    25021 aaagcatctg cacttagaaa aataatattt tttggatgac ctgcttttaa gcttggttca
    25081 tgattttcta tatgttctat aggataagaa actctagtat tttcagtctt tgaagcatcg
    25141 ctataatcta cgctcttatc accccttaaa accacatttt ccaaaagtgc atttctctta
    25201 atcgctccat aaatttcagg ttcactctca ggatcaagat tgatagtttt tgcataacat
    25261 ccaccctcga agttaaacac tccttcatca tcccatccat gctcgtcatc gcctataagc
    25321 tttctttttg gatcggtaga aagagttgtt tttccagtgc cactcaggcc aaagaaaagt
    25381 gcaacatcgc ctttttcacc aacatttgca ctacaatgca tagaaagctt attttcaaga
    25441 ggtagccaat aattcatcat ggaaaaaatt ccttttttca tctcgccgcc ataccaagtt
    25501 ccgccaataa ctgcaatatt ttcttctatg ttaaaaatca caaaaacttc agaatttaaa
    25561 ccattctttt catagtcttt attgacacat ttgcatgcat tataaacgat aaaatcggct
    25621 ttaaattcat caagctcttt atcattagga cgaatgaaca tattttttac aaaatgtgct
    25681 tgccatgcaa tttcagttac aaatcttata gccttacgac ttttcaaaga agcgccgcaa
    25741 aaaacatctt gcacataaat ttctttattg cttaattctt ttctagcctt cattaaaagc
    25801 tcatcaaaaa gttctttagt gattgcttga ttgactttac cccaagctat atacttgcta
    25861 gaagggtctt gttttacaaa atatttatcc tttggacttc ttcctgtaaa aattcccgta
    25921 tctacagtaa aagttccatt atccgtgcat tgcccctctt cattcttttt ctcatgttca
    25981 tagagttcat caaaacttaa attatgataa acttttttta tattttccaa acctaaattt
    26041 tcaaatttct tcatttaaaa cctcaattat ttttatatat tgcgactaaa ttattttcgc
    26101 taacactatc acccgtcttg acacaaattt tttctattat gccatctttt ggtgcactaa
    26161 cctctatctc cattttcata gcttctaaaa tcataacaac ttgacccgat tttacctctt
    26221 caccttcatt aatataaatt ttaaatacat tacccgaaat tccagcttgt ataccttcgc
    26281 ttgaatccgc atcttgcatt atatcttctt gagtatctgc tttgtgaata cttttaatat
    26341 ttacatcttt atcaaagcct gcacttattt ctacatgata tttgtttcca ttaactgaaa
    26401 ctgtaaattt attctcatca ataccagtag aattttgttt tggcgcagac acattcttgc
    26461 gcacattaac tttagcttca ccttttaaat acgctatacc tttttcttta caagctgctg
    26521 caatgaaaat attttcctcg cttactgcta tgccctcttt ttcaagtaaa ctcttaacat
    26581 aagctatact tttggtttca tccttatccg ctatatcgat agcaagttct gtagtgggct
    26641 ctaaatttag ctgtttagct gcaagttttt taacttcagc atcaggctcg acaggagttt
    26701 taccaaaata tcccaatacc atttttccat aaccttcagc aattttttcc caaggtccaa
    26761 acatgacatt gttaaaagct tgttgaaaat aaaattgaga aacaggagtt acagaagttc
    26821 caaaaccacc tttttccaca acttcacgca tagcatgaat aacttctggg aatttatcga
    26881 gtatattatt atccctcatc atttgagtat tggcagttaa agctcctcct ggcataggag
    26941 agaatgggat taaaggactt accattgtag cttcaggcgg taaaaaatac tcttttaaag
    27001 aatcttttaa aactgcttcg tattttaaaa tcttttcttc ttctaatcca cccaaatcat
    27061 aatttttacc ttttaaagca tgcatcatag ttaaaatatc aggctgtgaa gtacccccac
    27121 tcacaggagc tgctgctaaa tctataccat caaccccagc ttccaatgct gctaaataac
    27181 aagctatact cactcctgca gtttcatgcg tatgaagtct tatatgcaca tcttgtggta
    27241 aattttttct agccatttta atggtttcat aaattttatt tggatttgaa gttccgctag
    27301 catccttaaa acaaatacta tcaaaaggaa tttcagcagc taaaatttct tttaatattc
    27361 tttcataaaa tggtacatcg tgggcacctt gacaatttgg tggtaaatcc attaaagtaa
    27421 ttgtgatttc atgttttaag ccgtattttt taatacattc tccactgaat ttaagattat
    27481 ttacatcgtt taaagcatcg aaatttctaa ttgttgtagt gccatgctta gcaaaaagtt
    27541 tggcatgtaa atcaataagc tctttacttc ctgtatccaa agtaacagta tttacacctc
    27601 ttgctaaagt ttgcaaattc gcatcttttc caacaatcga acggaattta tccatcattt
    27661 caaaagcatc ttcattaagg taaaaataaa ggctttgaaa ccttgctcca cctccaaatt
    27721 caaaatgagt tatccctgct tcttt
//
LOCUS       DARAII010000009        27028 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.009, whole genome shotgun sequence.
ACCESSION   DARAII010000009 DARAII010000000
VERSION     DARAII010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27028
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.009"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..381)
                     /locus_tag="SB143_000331"
     CDS             complement(<1..381)
                     /locus_tag="SB143_000331"
                     /inference="COORDINATES: protein motif:HMM:NF012334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEF9748901.1"
                     /translation="MDKVVFITGGSTGIGNACVHKFHNEGYKVAFMDINQEEGQKIAN
                     NLKDVLFIAGDTKNKEDIKNAVARAVEKFGNFDVISLNAGIHRCNTILDISDEELDLI
                     IQTNIYGYVNTMRIAIPHMKKEGGS"
     gene            complement(523..1842)
                     /locus_tag="SB143_000332"
     CDS             complement(523..1842)
                     /locus_tag="SB143_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEF9748902.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSTIFKIIKVFFIAFLLSNCIYLS
                     FFENIFTQAISSFLAIWGLVLLLKSKSPKQYFWIGFFVGILWFWWIGLSSIYFDLNYL
                     VPIVIILIGIVYGILFRICYLFKFDFLRLCGIFCLSFIHPLSFDWLNWGVYTVYGFFD
                     PSYRGIICIFLLAYIIHENYISRYYKIAILLIIFFIGFQYDEKKSEELNLSYKLISTD
                     ISQDQKFLQENVSVNSDNLIKEIIQAINEKKELVILPETAFAFNLKNTLYEKMLKELS
                     YQIIIITGAFNIQEGKTYNSTYIFKGGNSYILNKHFLVPFGEEIPFFKKTIQKYFLPN
                     IAEFDQGPLQSKYKLNDQIITNAICYEATKEQNYKNSKIIIAISNNAWFNYSSEYKLQ
                     KLLMQFYASKYGVSVYHATNGKESGVIKPKEKFVQKIKNYFNKQDKS"
     gene            1815..2087
                     /gene="yajC"
                     /locus_tag="SB143_000333"
     CDS             1815..2087
                     /gene="yajC"
                     /locus_tag="SB143_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEF9748903.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            2080..3660
                     /gene="secD"
                     /locus_tag="SB143_000334"
     CDS             2080..3660
                     /gene="secD"
                     /locus_tag="SB143_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEF9748904.1"
                     /translation="MRNSKITYRLVVFIAVFIFGVVFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNQEAVKSKIKSVASSLSYSFNKENILNDGLNIHDDSLDFTLLDNADIV
                     KTENLLKEINGLNVQREGMHYTISFTSEEVKSIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGEDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMSQASNMSDAEAAS
                     YGLVLVPDSRNPNLKYPLKSIPILDGSMLTDARVGLSDTSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASIFIVVFMVLYYGMAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLREGANIKASIEQGYK
                     NAMSAIIDSNITSLVTSIALYAYGTGAVKGFAVTLGIGIVVSMITAIWGTHGMFDYSM
                     RRIEKSNNTRFWFGYRRK"
     gene            3660..4631
                     /gene="secF"
                     /locus_tag="SB143_000335"
     CDS             3660..4631
                     /gene="secF"
                     /locus_tag="SB143_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEF9748905.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSIVLFFGSIYLLWDRGLQFGID
                     FSGGTLIQLKYDTAAPIPQIREILEKQGSFQNLSVTEFGSKEEITIRFLGSNDSLGSD
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGIMAIIVSLVAILIYIAIRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKSELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIVVGT
                     LSSIFVASPTLLWFKFSVIDFRNKELEKLKRKQEKERNRAMYEKGTV"
     gene            4641..7073
                     /locus_tag="SB143_000336"
     CDS             4641..7073
                     /locus_tag="SB143_000336"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEF9748906.1"
                     /translation="MAYDANLIEKRWQEIWDKNEYFEPKDDLTLPKKYILSMFPYPSG
                     RIHMGHVRNYSIGDAIARYYRKIGYNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKNELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMYEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLSELENLKDKWPSQVLTM
                     QENWIGKSEGLEFSLNLDKESLEKTKTQSFEVFTTRADTIYGISYVALAPEHKIVQNL
                     IQANCLDDEKVEQIKNMQKQSARERQIADKEGCFLGIYAIHPLTQEKLPVWVANFVLA
                     DYGSGAVMAVPAHDERDFEFANKYKLEIKQVIECEDAQLPHVQKTGKLIQSGEFNGFD
                     CNEVRARIISKFEDEKLGKRVINFKIRDWGVSRQRYWGAPIPMVKCKNCGIVPQKIEN
                     LPITLPEDIQITGEGNPLEKHPIWKNCTCPKCGQEAQKESDTLDTFFESSWYFARFAS
                     DEKTWQEKALDKESVKYWMNVDQYIGGIEHAILHLLYARFFQKVLKDLGYLEDNEPFA
                     RLLTQGMVLKDGAKMSKSKGNVVDPDDIINKYGADTARLFILFAAPPAKELEWNDDAV
                     EGAYRFICRLYDRAQNVRAGELLEFKHDDLNKEEKYARLKVYEALKKSFEVYTQSFAF
                     NTLIAACMEALNALAPCKNEALEQEAFYIILNILEPIIPHVCFELSDKLFKCENFKVL
                     NLKEEVFVKDSLNLGISVNGKKRGEIEVSSSASQDEILELAKQKVSKWLEGKNIVKEI
                     YVEGKLVNLVIK"
     gene            7070..7582
                     /locus_tag="SB143_000337"
     CDS             7070..7582
                     /locus_tag="SB143_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748907.1"
                     /translation="MKGILFFIVALFLGACGYVPTSKVADNIFDDKVYVNVELSLQDP
                     RNSIFVADTLKEMVISKLGRRLALKHEADDVINVRMNNLEFIPLIYDQNGYVVSYKAK
                     LNLEFKVVFKDGSVEHFNTSGSYNFDISPNSIISDTARYEAIRSASSEAFDEFISVIA
                     IKGQKRAAQY"
     gene            7566..8969
                     /locus_tag="SB143_000338"
     CDS             7566..8969
                     /locus_tag="SB143_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748908.1"
                     /translation="MLPNINEIAKETLITLKDRKLRPTPENYTEIFEELSKKYGLISS
                     NKAKLEKYKALLLPNYQQELNSKSIRTLEELISFLISALNRQNGKQFSEFFDFLATLS
                     KSLQVSKDKKIRDLAKITSIRISKTMDSESIYLLSKKWKEFEKNYNENDLEGGLRRYG
                     IAKYDDFDTVVKKLLNKLEERSLEVFAELLASCLNPSLVEDLKIHGFAQNLLQKPFLL
                     SESGFKNELLEFVNRRVMVDNMYVQKNLNFFNDNLKKIYELFMLLNKSNEQNMDFINT
                     LKPDKQGEIKLSFELLKQKFIQLNERINSLNAQIEFTQNLEERESWSVLKELERLDEN
                     YNKYKVNYSLALFSIKNYRFIMERYGVGSLNEIFVRFKKILKDNCSEFDELWMIDEKS
                     YLIISPGRNKEKVAQLVRENLKTIENFRFIYKQDIITPKIITAYLDKQSKPHANILEE
                     LMNQISNLDERNNAKDQ"
     gene            8941..10128
                     /locus_tag="SB143_000339"
     CDS             8941..10128
                     /locus_tag="SB143_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEF9748909.1"
                     /translation="MKETMQKISKVDEFLVQKSTNYDKIDRFVMFRMYEKYKTNFSIK
                     PIVHIIGTNGKGSTGRFLTQLLEGLGFKVGHYTSPHIFEFRERFYKNGDIISENDLEL
                     AHENLLDIFKDNLKKLSYFEYATFLAVELFKDCDYAIFEAGVGGEYDATSVFVKSLSI
                     FTKVGFDHTQILGDSLEKIARTKFKVMAKQALISSEQDERVLQMAQKIAFLKNTKLYF
                     SWQLKDENLMQLNEYVQKYDLPEFLRHNLILALNALEILLSKEKLSQALLKLGKLNLK
                     GRCEQIAPHLYVDVGHNVMAASALCKKFSGKKLVLIYNSYLDKDIFEILKTLKPIIDT
                     IKIYKYVSLERRLANDKIYQVANALNLKCEEFVSLDEKKKTLVFGSFALVESFLKEWS
                     DKK"
     gene            10115..11017
                     /locus_tag="SB143_000340"
     CDS             10115..11017
                     /locus_tag="SB143_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEF9748910.1"
                     /translation="MIKNKFTITITDINGSRHFYLNQIIKKIVLYVVAFIFLFLIFSG
                     FYIKYLDSKLSDISTKREELLAKSKELELANAQMQKNVEEKAKQYAAIEDKIASFEEA
                     LGLEAENNLTITDRLDNLKLTNEQQIGILGQIPNGWPIENKGVTGNFGWREHPLLKRR
                     EFHPGIDLRAAIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMVRKDV
                     VKAGQFVNKGQLIGYTGNTGLSTGPHLHYEVRFINKTLEPLYFLNLERKNMNEFFNQE
                     RRVPWQSLIKAVTAQHLAPVPKQQ"
     gene            10954..11349
                     /locus_tag="SB143_000341"
     CDS             10954..11349
                     /locus_tag="SB143_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEF9748911.1"
                     /translation="MAIFNKSGNGTALSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     NGIVHSESIVVIGKNGNLKGELKADKIVVNGCFEGDLEADSLEILAGGVVSGNISIKD
                     LAIENGGRFNGTSKIKQEEPVRLLENSSE"
     gene            11349..14285
                     /locus_tag="SB143_000342"
     CDS             11349..14285
                     /locus_tag="SB143_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004290191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEF9748912.1"
                     /translation="MQANFFEYLQDSNIAQLVLCEDDKESFLLSQVALFKDLKTFVLP
                     DFRAEFGDDLRAFSKELFELCKVLNAYHKEKDTKILISPLSTILKKLPGQKHLKNYKL
                     SKKNVFNLSEFKNELNKLGYEFVDMVQDKGEVSIRGEIIDIFCINEELPTRVLLFGDE
                     LESIRKFDPMNQKSFPKEYEELEICPFLTYFSEENYENFKDKLENFNSDVLINDINSL
                     GFWCIDDFCDYLELDFISIKKFNQEEWDKDLSKINAKIIPQASVYKDLKSSYNKDFFS
                     LQQNKKITILAKNEALFKALELENTQNISFQKSDLILNLISNQELIISLNHKEKQKYK
                     RKANLIIDELKIGDFIVHEDYGVGKFLGLEMISISGAKKEFVAIEYQNSDKLLLPVEN
                     LYMIDKYLGASGGIPLLDRLGKMTFIRLKERLKTKLLAIASEIVIMAAKRALIKPKEI
                     KIDYADQAYFVSKAGFSYTQDQNKACEEILNDFENGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFFFAPTTLLSHQHYKSLKKRFEPFGIEVFKLDRFTSTKEKKTLMLNL
                     EQNKACVVIGTHALLNVECENLALVIIDEEHKFGVKQKEKLKELTQNSHLLSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRLDVRTFVKENDDALLKEAITRELRRGGQIFYIHN
                     HIASIEQCKKHLLDLFKNLRILILHSKIDAKIQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTMIVERSDRFGMADLHQLRGRVGRSDRQGYCYFLVENKEELTQDALKRLVSL
                     ESNSYLGAGSVLAYHDLEIRGGGNLLGIDQSGHIEQIGLSLYLKMLEDELNALTKKES
                     FEEKKIDLKLTINAFLNSELINEDRLRLELYRRLSKCKNIDEVYEIEGEIEDRFGKLD
                     LYTKQFLMLIIIKILALGKFKTISNFEQNIQFVKINDEKEFIKARSKDDDDIIEAVLT
                     HLRKDK"
     gene            14289..15050
                     /locus_tag="SB143_000343"
     CDS             14289..15050
                     /locus_tag="SB143_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9748913.1"
                     /translation="MDWDKTYAAIYRSRKDYLKPIIDLDNISLNDLLGMEEQKNVLYQ
                     NTLNFIHNKGANHALLWGAKGTGKSSLIKAIFNEFKDKGLRLVELAKDDLFALVDIID
                     ELREQPFKFILFCDDFSFEKNDDSYKFLKPLLEGSIEAPPQNIIIYASSNRRHLLSES
                     MSDNQGVQVAHTELHASDAAEERLSLSDRFGLWLSFYQGNLNEYLKLVDFYFKDIKCD
                     KELLHKKAKEFANLRASRSGRTAKQFYLAFKESIE"
     gene            15047..15730
                     /locus_tag="SB143_000344"
     CDS             15047..15730
                     /locus_tag="SB143_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEF9748914.1"
                     /translation="MNGADIFKKLLACNLDFKEFDWLENQGLSDFELLISVILTQNTK
                     WDNVLKALNNLKNARISSLEQLSNLSNLELATLIKPSGFYNTKAKRLKELANKILDTY
                     SNIENFKKNVDREWLLNTKGLGFESVDSILNYLCKREILVVDSYTQRLATHLGYEFEN
                     YEELREFFESGIENEQENLCQILEKKYELFELYQIFHAAIIAFGKVAFKGVKLTLEGE
                     NLIQNLKEE"
     gene            15730..16542
                     /gene="thiD"
                     /locus_tag="SB143_000345"
     CDS             15730..16542
                     /gene="thiD"
                     /locus_tag="SB143_000345"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEF9748915.1"
                     /translation="MKAKGSDLIPVLSIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPVQSVDEQMLAVFEDIVPKATKIGMIGTCELMECVARNLEKF
                     KPQNIVIDPVMFAKNGFALMPQENCDFFKKTIVKFADILTPNIPEAEFLCDFKIKNEE
                     DMIKAAKYLCTQGAKAVLLKGGHSEENANDVLFDGNEIFILKGERIETKNTHGTGCTL
                     SSAIASNLALGKDLYNAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFRFLNEK"
     gene            16532..17164
                     /gene="thiE"
                     /locus_tag="SB143_000346"
     CDS             16532..17164
                     /gene="thiE"
                     /locus_tag="SB143_000346"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEF9748916.1"
                     /translation="MKNDLDLSLYLVASRGKKSDELFLNTLEEAIKGGVSIIQLREKE
                     LSSREFYKLGLKVQKLCKEYEIPFLINDRIDIALALDADGVHLGQEDLEVRFARKILG
                     KEKIIGLSLKNLEQLKDIDGADYLGCGAIKATPTKESSVISFETLSQICEKSPIGVVA
                     IGGIDKELIKELKGIKISGIAVVRAIMDAQNAYLATKELRQEMNENLSFK"
     gene            17142..17771
                     /locus_tag="SB143_000347"
     CDS             17142..17771
                     /locus_tag="SB143_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEF9748917.1"
                     /translation="MKIYLLNETVFEGVENLVLNEIVFYDFGVNLDEFDALLCTSKNA
                     LKALKKTKNSLNLDINVYAVGQNTAQFAKDMGFKKVQFAPKSYGSELFNHFKEELKNQ
                     KCLYLRAENIASTLNLDLRTYGVDLQEIIVYKNVFKKSKQTILHPAIFIFTSPLSVEN
                     FFKQYDLKKEDKVIAIGQSTAKKLTHLDNLFISSKQDLKECVKLAKSLI"
     gene            complement(17764..18216)
                     /locus_tag="SB143_000348"
     CDS             complement(17764..18216)
                     /locus_tag="SB143_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748918.1"
                     /translation="MKRAYILLSLVFLISALGIWLSLNITTSSYIPRFVKDAYYYLQA
                     QILADEKLVKYLLYQAKLDGKECLDSITLHYPNLNDKIKIQYHYPIAQCKNFKFQAIN
                     KDANLSQDGIIIAHMSIALNTQKNVNDEILINKTFILHTKESFWNQTK"
     gene            complement(18213..18881)
                     /locus_tag="SB143_000349"
     CDS             complement(18213..18881)
                     /locus_tag="SB143_000349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748919.1"
                     /translation="MNKAFSLFETILVLILIGFLALFLSRTLWEFYYLNNQQLKMKDL
                     ILKTHLSVLRLEKLLQTCTNITFEPNHISCLLKDDLLYLDDNKEKLLNSSLILENNTS
                     LYSPNSNFKLQLQNRKELYNDEQNIIYALVNKEIKKIFIHSENNITASFKGKFIPIQA
                     RIKLFLKEDKIHYELYPYFNNQLEQYSIFMDNVSLFEIQKQKLKICLKEQEQEYCLTK
                     RLFI"
     gene            complement(18874..19179)
                     /locus_tag="SB143_000350"
     CDS             complement(18874..19179)
                     /locus_tag="SB143_000350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748920.1"
                     /translation="MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERL
                     YTLQDKLYTNPHQRDIKLHIQNLKTFDFKENFVNDNIFQFKKLHIQNQDYSLYFYDE"
     gene            complement(19176..19913)
                     /locus_tag="SB143_000351"
     CDS             complement(19176..19913)
                     /locus_tag="SB143_000351"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEF9748921.1"
                     /translation="MKADLYILANGAMAQALAYGLKDSYNIYIVGRNLEKLQILEKEG
                     FKTLLYKDFNIENKNIILAFKPYALESVAANLKGKAKILISVLANTDFDKLKLIQAQN
                     YARIMPNTAAKYKASTTPYVLKNSNFKDEVIEILNTFGKAYELNEEKQMNAAMAISGC
                     APAFLALVAESIANAGVYEGLSKELSLNLTRSLFKSAAALLENEHPAIIKENICSPAG
                     VTIKGIKVLEQKGIRGTFFEALNASAT"
     gene            complement(19913..20302)
                     /gene="fliW"
                     /locus_tag="SB143_000352"
     CDS             complement(19913..20302)
                     /gene="fliW"
                     /locus_tag="SB143_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEF9748922.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFEIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     SMVQVILDTVAYPNFFQADQIANYIKK"
     gene            20466..21113
                     /gene="bamD"
                     /locus_tag="SB143_000353"
     CDS             20466..21113
                     /gene="bamD"
                     /locus_tag="SB143_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEF9748923.1"
                     /translation="MKKNFFLCILLGILFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHIADPLLETTQIILAQAHMDEEEYQLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDSFLNDYPYTEYEPLVQTMLTKFN
                     LAVFYLNDTIQDLYERTGHTQSAEIYQERLQESEFYQQSIIKPELPWYRSIFEKF"
     gene            21129..23504
                     /gene="lon"
                     /locus_tag="SB143_000354"
     CDS             21129..23504
                     /gene="lon"
                     /locus_tag="SB143_000354"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEF9748924.1"
                     /translation="MQIEEMQNYPSNLPILVEDELFLYPFMITPIFISDSANMKALDL
                     AIKNDSMLFVAPSKLENGRSFDEIYDCGVVGTIMRKVPLPDGRVKILFQGYAKARIIK
                     PLSSKPLEAKIELIKEEFLEGTKKEALLDVLKEKVRVLANISHYFSPDLLRTINEGLD
                     ASRICDLILNTVRIKKQEAYRFFILTDLEEKLLKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDNQKEDEVRDYYKKLESKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKIAKKKLDIKEVAKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRGVADKDGAKVILCLYGPPGVGKTSLANSVAKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVVVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNLDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPNEKF
                     HITKKYLIPDELKKHGLKSSELDINDETIELIISEYTRESGVRNLRRKIAELCRKSAK
                     KLLLENIKKVSINVKNLNEFLDKKVFEIEKHDGENRIGQVNGLAWTSVGGDVLKVEAI
                     KIKGKGELTLTGSLGDVMKESARIAFSVIKVLIDEGKIKIPKKMILDPKTNVYDSYNL
                     HIHVPDGATPKDGPSAGITMSTAIASVFSDKKVRSDVAMTGEIDLAGNVLPIGGLKEK
                     LIAAYKADIKIALIPKKNYERDLKDIPDEVKDNMKIIGVKDFDEVLKYALV"
     gene            complement(23561..23821)
                     /gene="rpsR"
                     /locus_tag="SB143_000355"
     CDS             complement(23561..23821)
                     /gene="rpsR"
                     /locus_tag="SB143_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEF9748925.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVVNNPFEGL"
     gene            complement(23832..24380)
                     /locus_tag="SB143_000356"
     CDS             complement(23832..24380)
                     /locus_tag="SB143_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEF9748926.1"
                     /translation="MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERR
                     EETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRFEQWNDQNGQMRSKHSVQVENME
                     ILGNNPQQGGNLNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
                     NQEKIKEIDVDAYDSDDTDLPF"
     gene            complement(24389..24766)
                     /locus_tag="SB143_000357"
     CDS             complement(24389..24766)
                     /locus_tag="SB143_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEF9748927.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLVKNGAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERILRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            25046..26317
                     /locus_tag="SB143_000358"
                     /pseudo
     CDS             25046..26317
                     /locus_tag="SB143_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790527.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            26317..26784
                     /locus_tag="SB143_000359"
     CDS             26317..26784
                     /locus_tag="SB143_000359"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748928.1"
                     /translation="MKIGLETESMHLWFQNGRMDIFSYIDFAEELGCDGIIINIIKDF
                     GLDEEWGCLGSNDESHLKKIKEKLDTYGMYCEIDSKGFDKDKFEKIAKVSQLLGVKII
                     RSYVPLTDKNKKVKNASDGAYDDSKITAKFDKSEFLSTADEIKALIPLLEEYD"
     gene            26793..>27028
                     /locus_tag="SB143_000360"
     CDS             26793..>27028
                     /locus_tag="SB143_000360"
                     /inference="COORDINATES: protein motif:HMM:NF013429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEF9748929.1"
                     /translation="MENHEYQTSDDLLELLNLIHHPRIGFLYDFGNSMMAYEEPIKAC
                     ENMAKHTFSTHCKDHIVFIEDDTKYVCGVPLGEG"
BASE COUNT         9360 a         3409 c         5003 g         9256 t
ORIGIN      
        1 acttccgcct tcttttttca tatgaggaat ggcgatcctc atggtgttta catagccata
       61 aatattggtt tgaataatca aatcaagctc ctcatcgcta atatcaagaa tggtattgca
      121 gcgatgaatt cctgcattta aagaaattac atcaaaattt ccaaattttt ctactgctct
      181 agcgacagca tttttaatat cttctttatt ttttgtatct cctgctataa ataagacatc
      241 ttttaaatta ttcgctattt tttgtccttc ttcttgattg atatccataa aggctacttt
      301 atagccttca ttatgaaatt tatgtacaca agcattgcca ataccagtag agcctcctgt
      361 aataaataca actttatcca tagcattatc tccttttgta aattataaag aaattattaa
      421 aacatatcta attttaaaat atcttaaaat taaaatttaa tgattaattt ttttgagagc
      481 ttgtgtattt aatataattt tttgcacaaa gataaaaatt ttttaacttt tatcttgctt
      541 gttaaaataa tttttaatct tttgcacaaa tttttcttta ggtttgatta caccactttc
      601 cttgccattt gtggcatggt atacactaac tccatatttg cttgcataaa attgcatgag
      661 tagtttttgt agtttgtatt cgctagaata attaaaccaa gcattattac ttatagctat
      721 aataattttt gaatttttat aattttgttc ttttgtagct tcgtaacaaa tagcattggt
      781 aatgatttga tcattgagtt tgtatttgct ttgtaatggt ccttgatcaa attctgctat
      841 attgggtaag aagtattttt gtattgtttt tttgaaaaat ggaatttctt ccccaaaagg
      901 tactaaaaaa tgtttattga gtatatagct attgcctcct ttaaaaatat atgtactatt
      961 gtaagtttta ccctcttgta tgttaaatgc tccagttatg atgataattt ggtatgatag
     1021 ctcttttagc attttttcgt ataaggtgtt tttgagatta aatgcaaaag cggtttctgg
     1081 caagatgacg agctcttttt tttcattgat ggcttgaata atttctttga ttagattgtc
     1141 tgaatttaca gatacatttt cttgaaggaa tttttgatct tgagatatat ctgtggagat
     1201 aagcttatag gatagattta gctcttctga ttttttttca tcgtattgaa agcctataaa
     1261 aaatataatt aagagaatag caattttata atatcttgaa atataatttt catgaataat
     1321 atatgctagt aaaaaaatac aaataatacc acgataactt gggtcaaaaa aaccatatac
     1381 agtataaact ccccaattaa gccaatcaaa gcttaaagga tgaataaagc ttaaacaaaa
     1441 aattccgcaa aggcgtaaaa aatcgaattt aaataaataa caaattctaa agagtattcc
     1501 ataaactata cctataagga taataactat aggtactaaa taatttaagt caaaataaat
     1561 cgaagaaagt cctatccacc aaaaccaaag tatccctaca aaaaatccta tccaaaaata
     1621 ttgcttagga cttttgcttt ttaaaagcaa gactaagccc caaattgcaa gaaatgaact
     1681 gatcgcttgg gtaaaaatat tttcaaaaaa agataaataa atacaatttg aaagcaaaaa
     1741 tgctataaaa aagactttta ttattttaaa aatggtagaa ttagtgttta atttttttgg
     1801 aataaaggaa aaatatggca gaaaattcaa ttttaacttc attgttacct cttgttgtgc
     1861 tatttgcaat tttttatttt ttggttataa gaccacaaca aaaacaagca aaagcgcata
     1921 agcaaatgct tgagtctttg caaaaaggag ataaaatcat cactaatggc ggacttattt
     1981 gtgaagtcgt aaaaccagag gaggatttta tcaaagttaa gcttaatgaa gacaatgtta
     2041 ctgcaaaaat ttcaagagaa tttatagcaa agaaaattga tgcgtaattc taaaatcact
     2101 tatcgattgg ttgtttttat tgcggtattt atttttggag ttgttttttc actcccttct
     2161 tttttgcaat ccgagcgagg agcgaaaatc aatttagggc ttgatttaca aggcggactt
     2221 tatatgcttt tgggtgtaga taatcaagag gctgtaaaat ctaaaatcaa atccgtcgct
     2281 tcttctttga gttattcttt taacaaagag aatattttaa acgatggatt aaatatccat
     2341 gatgatagtt tggattttac tttattagat aatgcagata tagttaagac tgagaatttg
     2401 cttaaggaaa ttaatggact taatgtacaa agagaaggta tgcattatac aatttctttt
     2461 acctcagaag aggttaaaag tatagagaat tttgctcttt tgcaagcagt tgagactatt
     2521 agaaatcgtt tggatcaatt tggcttagca gaaccaacgg ttgcaaaaca aggcgaagat
     2581 aaaatcttag tcgaattggc aggaattaaa accaaagagg atgaactaag ggctaaagag
     2641 cgcattacta aagcagctca tttgcaactc atggaagtgg atgattctaa aatgagtcaa
     2701 gcttctaata tgagtgatgc tgaagcggca agctatgggc ttgttttagt tcctgattct
     2761 agaaatccaa atttaaaata tcctttaaaa agcattccta ttttagatgg ttctatgctt
     2821 acagatgcta gagtagggct tagtgatacg agtaattatc ctgttattaa ttttacttta
     2881 aatgctgaag gttctaagaa atttgctgat tatacaggag caaatgttgg aaagcgtttg
     2941 gctatcgtgc ttgataataa agtatattct gctccatcga ttaatgaacg cataggcggt
     3001 ggaagtggtc aaatcagcgg ggcttttact caagaagaag cacgagatgt ggctgtggct
     3061 ttaagaagtg gggctttact ggcgccagtt aaacttttag agcaaagaag tataggtcca
     3121 tctttgggtg ctgatagtat taaaatgagt atgatagctc ttataggtgc ttcgattttt
     3181 atcgtggtat ttatggtgct ttattatggt atggcaggaa tttttgcaaa tattgcaatg
     3241 ctcgttaatg ttttggttgt tgtggctgta atggcaatgt ttggtgcaac tttgacttta
     3301 ccaggtatgg caggacttgt tttaactgta ggtatggctg ttgatgccaa tgttatcatt
     3361 aatgagcgta tcagagagct tttgcgcgag ggtgcaaata tcaaagcaag tatagagcaa
     3421 ggttataaaa atgctatgag cgcgataata gattctaata tcacctctct tgtaacctct
     3481 atagcacttt atgcttatgg aacaggtgct gttaaaggat ttgcagtgac tttaggaatt
     3541 ggtattgttg tttctatgat tactgctatt tggggaacgc atggaatgtt tgattattct
     3601 atgcgccgta ttgaaaaaag taataataca agattttggt ttggttatag gagaaaataa
     3661 tgcagttttt tagcgaaaag aaaatttatg attttatgag aatgcgtttt gctgcaattt
     3721 ctctttctat cgttttattt tttgggtcta tttatttgct ttgggatagg ggtttgcaat
     3781 ttggtattga ctttagtgga ggtactttaa tccagcttaa atacgataca gcagctccca
     3841 ttcctcaaat tcgtgaaatc ttagaaaaac aaggcagttt tcaaaattta tccgtaactg
     3901 aatttggaag caaagaagag attactatcc gttttttagg aagcaatgat agcttaggta
     3961 gtgatatagg agagcatatt agcacccttt taaaagatac gggtaaattt gaagtgcgtc
     4021 gcgcggatgt tgtgggtcca aaagtgggcg atgagcttag aaataaaggt attatggcta
     4081 tcattgtatc cttagtagcg attttaattt atatcgcaat acgctttgaa tggcgttttg
     4141 cattagcggc aattattagc gaaattcacg atgttgtgat tactttaggg gcgatttcat
     4201 tgtttaaaat cgatgtaaat ttagatacct tggctgcggt tttaacagtg cttggatatt
     4261 ctttaaatga tacaatcatc atttttgata gaattagaga gggaattaag acgagtaaaa
     4321 aaagcgagct tgctcctatt attaacgaaa gtgtttcagc aaccctatct agaacggtat
     4381 taacttcagg tcttactttg gccactgttg tcatacttta tttttttggc ggagagatga
     4441 tacaaggatt ttctttggct ttgatagtgg gtattgttgt aggaacttta agttctattt
     4501 ttgtagctag tccgacttta ctttggttta aattcagtgt tattgatttt agaaataaag
     4561 agcttgaaaa acttaaaaga aagcaagaaa aagaacgcaa tcgtgcaatg tatgaaaaag
     4621 gaacggttta aaggaatatt atggcttatg atgcaaattt aatagaaaaa agatggcaag
     4681 aaatttggga caaaaatgag tattttgaac ccaaagatga tttaacccta cctaaaaaat
     4741 atattttatc tatgtttcct tatccaagtg gtcgtataca tatgggacat gtgagaaatt
     4801 atagtatagg tgacgctatt gctagatatt atcgcaagat aggttataat gttttacatc
     4861 ctatcggttt tgatagtttt ggtatgcccg ctgaaaatgc agctattaag cacaaaattc
     4921 atccaaaatc ttggacttat gagaatatag cctatatgaa aaatgaactt ttttctttag
     4981 ggttttcttt ttcaaaaaaa agaatgcttg caacctctga tccgctttat acaaaatttg
     5041 aacaagaatt ttttatcaaa atgtatgaaa aaggtttgat ttataccaaa gaagcgaatg
     5101 taaattggtg cgagcaagat caaaccgttt tggcaaatga gcaagtagaa gatggaaagt
     5161 gttggcgttg tggacatgaa gtggttcaaa aaaagatgcc agggtattat gtaaaaatta
     5221 cagcctatgc agaggaactt ttaagcgaac ttgaaaattt aaaagataag tggccttctc
     5281 aggttttaac catgcaagaa aattggatag gtaaaagtga aggtttggaa ttttctttaa
     5341 atttagacaa agaaagcttg gaaaaaacaa agacacaatc ttttgaagtt tttactactc
     5401 gcgcagatac tatttatggt atttcttatg tagctttagc acctgaacat aaaattgtgc
     5461 aaaatttaat acaagcaaat tgtttagatg atgaaaaagt agaacaaatt aaaaatatgc
     5521 aaaaacaaag cgctagggaa agacaaatag ctgataaaga agggtgtttt ttaggaattt
     5581 acgctatcca tcctttgact caagaaaaac tccctgtttg ggtggcaaat tttgttttag
     5641 ctgattatgg tagtggggct gtaatggctg ttccagctca cgatgagaga gattttgaat
     5701 ttgctaataa atacaaactt gaaatcaagc aagtgattga gtgtgaagat gcacagcttc
     5761 ctcatgttca aaaaacagga aagcttatcc aaagtggtga atttaatggg tttgattgca
     5821 atgaagtaag agcgagaatt atttcaaaat ttgaagatga aaagttagga aaaagggtta
     5881 ttaattttaa aattcgcgac tggggagttt ctcgccaaag atactggggt gctcctatac
     5941 ctatggtaaa atgcaaaaat tgtgggattg tgcctcaaaa aattgagaat ttacctatta
     6001 ccttgcctga agatattcaa atcacaggag agggcaatcc gcttgaaaaa catcctattt
     6061 ggaaaaattg tacttgtcca aaatgtggac aagaagcaca aaaagaaagc gatactttgg
     6121 atactttttt tgaaagttca tggtattttg cacgctttgc aagtgatgaa aaaacatggc
     6181 aagaaaaggc tttggataaa gaaagtgtga agtattggat gaatgttgat caatatatag
     6241 gtggcataga gcatgccatt ttacatttgc tttatgcaag attttttcaa aaagttttaa
     6301 aagatttagg ctatttagag gataatgagc cttttgctag acttttaact caaggtatgg
     6361 ttttaaaaga tggtgccaaa atgtctaaat ccaaaggaaa tgtagtcgat cctgatgata
     6421 ttatcaataa atacggagcc gatactgcaa gactttttat cctttttgct gcacctcctg
     6481 ctaaagaact tgaatggaat gatgatgcgg ttgagggggc ttataggttt atttgtaggc
     6541 tttatgatag ggctcaaaat gtaagagctg gggagctttt agaatttaag catgatgatt
     6601 taaataagga agaaaaatac gctagattga aagtgtatga agctttgaaa aaatcttttg
     6661 aagtttatac tcaaagcttt gcttttaata ccctaatcgc tgcttgtatg gaagcgctta
     6721 atgctttagc tccttgtaaa aatgaagctt tagaacagga agctttttat attatcttaa
     6781 atattttaga acctattatt cctcatgtgt gctttgaatt aagtgataag ctttttaaat
     6841 gcgagaattt taaggtttta aatttaaaag aagaagtttt tgtaaaagat agtttaaatt
     6901 taggcatcag cgtaaatggc aaaaagcgtg gagaaattga agtttcaagc tcggcaagtc
     6961 aagatgaaat tttagagcta gcaaagcaaa aagtttcaaa atggctagag ggtaaaaaca
     7021 tagttaaaga gatttatgta gagggaaaac tggtaaattt ggtgataaaa tgaaaggaat
     7081 tttatttttt atcgtagctt tgtttttagg ggcgtgtggt tatgttccaa cttcaaaagt
     7141 agcggataat atttttgatg ataaagtata tgtgaatgtg gaattaagcc ttcaagatcc
     7201 tagaaacagt attttcgtag ccgatacgct taaagagatg gttatttcaa aattgggacg
     7261 aagattggct ttaaaacatg aggcagatga tgtgatcaat gttaggatga ataatcttga
     7321 atttatccct ttaatctatg atcaaaatgg ttatgttgta agctacaaag ccaaacttaa
     7381 tctagaattt aaagtggtat ttaaggatgg tagcgtcgaa cattttaata caagtggaag
     7441 ctataatttt gatatatcac ctaacagtat tatcagtgat acagcgcgct acgaagctat
     7501 acgctcagct tctagcgaag cttttgatga atttatttca gtaatagcta tcaagggaca
     7561 aaagcgtgct gcccaatatt aatgaaatag caaaagaaac tttaatcaca cttaaggata
     7621 gaaagcttcg tcctacccct gaaaattata cagaaatttt tgaagagctt tctaaaaaat
     7681 atggtttaat aagctcaaat aaagccaaac ttgaaaaata taaagctttg cttttaccaa
     7741 actatcaaca agagttaaat tctaaatcca tccgtacttt agaagaatta ataagctttt
     7801 taatctccgc attaaataga caaaatggaa agcaatttag tgaatttttc gattttttgg
     7861 ctaccttatc taaaagtttg caagtaagta aagataaaaa aatcagagac ttggctaaaa
     7921 ttacttctat tagaatttca aaaactatgg acagcgaaag tatttatttg ctttctaaaa
     7981 aatggaaaga atttgaaaaa aattataacg aaaatgattt agaaggcgga ttaagaagat
     8041 atggcatcgc aaaatatgat gattttgata ccgtggttaa aaaactttta aataagttag
     8101 aagaaagaag tttagaagtt tttgctgaac ttttggcctc ttgtttgaat ccatctttgg
     8161 ttgaggatct taaaattcat ggttttgcgc aaaatttact tcaaaaaccc tttcttttaa
     8221 gtgaaagcgg ttttaaaaat gaacttttag aatttgtcaa tcgtcgtgtg atggttgata
     8281 atatgtatgt gcaaaaaaat ttaaattttt ttaatgataa cttgaaaaag atttatgaac
     8341 tttttatgct gttaaacaag tccaatgagc aaaatatgga ttttataaat accttaaaac
     8401 ccgataaaca aggggaaata aaacttagtt ttgaactttt aaaacaaaaa tttatacaac
     8461 ttaatgagag gattaattct ttaaatgcac aaattgaatt tacgcaaaat ttagaagagc
     8521 gtgaatcttg gagtgtttta aaagagcttg agagattgga tgaaaattac aataaatata
     8581 aagttaatta ttctttagca ttattttcta taaaaaatta tcgttttatt atggaaaggt
     8641 atggggtagg tagcttaaat gaaatttttg tgcgttttaa aaaaatttta aaagataatt
     8701 gctctgaatt tgatgagctt tggatgatag atgaaaagag ttatcttatt atttcacctg
     8761 gaagaaataa agaaaaagtg gcacagcttg tccgagaaaa tttaaagact attgaaaatt
     8821 ttcgttttat ttataagcaa gatattatta ctccaaaaat tatcacagct tatttggata
     8881 agcaaagtaa gccccatgct aatattttag aagaattaat gaatcaaatt tcaaatttag
     8941 atgaaagaaa caatgcaaaa gatcagtaag gttgatgaat ttttagtaca aaaaagtaca
     9001 aattatgaca agatcgatcg ttttgttatg tttagaatgt atgaaaaata taaaacaaat
     9061 ttttcgatta aacccattgt gcatattata ggaaccaatg gaaaaggaag tacgggtaga
     9121 tttttaaccc agcttttaga aggcttgggt tttaaagtgg ggcattatac cagtccgcat
     9181 atttttgaat ttcgtgagcg cttttataaa aatggagata ttattagcga aaatgattta
     9241 gagctcgcgc atgaaaattt gttagatatt tttaaggata atttaaaaaa acttagctat
     9301 tttgaatatg ctactttttt agcagtcgag ctttttaaag attgtgatta tgcgattttt
     9361 gaagcaggag ttgggggtga atatgatgca acttctgttt ttgttaaaag cttgagtatt
     9421 tttacaaagg tgggatttga tcatactcaa attttaggag atagtttaga aaagattgct
     9481 agaacaaaat ttaaagttat ggcaaaacaa gctttgattt caagcgagca agatgaaaga
     9541 gttttgcaaa tggctcaaaa aatagcattt ttaaaaaata caaaattata tttttcatgg
     9601 cagttaaagg atgaaaattt aatgcaatta aatgagtatg ttcaaaaata cgatttgcct
     9661 gaatttttaa gacacaattt aattttagcc ttaaatgcat tagaaatatt actttctaaa
     9721 gaaaaactta gtcaagcttt gttaaaatta ggaaaattaa atttaaaggg acgctgtgag
     9781 caaattgcgc cccatttgta tgtggatgtg ggtcataatg ttatggctgc tagcgccctg
     9841 tgtaaaaaat ttagtggcaa aaagcttgtt ttaatctaca attcttatct tgataaagat
     9901 atttttgaga ttttaaaaac attaaagcct attattgata caataaaaat atataaatat
     9961 gtaagtttag aaagaagatt ggctaatgat aaaatttatc aagttgccaa tgctttaaat
    10021 cttaagtgtg aagaatttgt ttctttagat gaaaagaaaa aaactttagt ttttggttct
    10081 ttcgctttag tcgaaagttt tttaaaggag tggagtgata aaaaataaat ttaccatcac
    10141 tattacagat attaatggtt caaggcattt ttatttaaat cagatcatta aaaaaatcgt
    10201 tctttatgta gtagctttta tatttttgtt tttaattttt agcggttttt atattaaata
    10261 tcttgatagc aaactgagtg atattagtac taaaagagaa gagcttttag caaaaagcaa
    10321 ggaattagaa cttgctaatg cgcaaatgca aaaaaatgtt gaagaaaaag caaagcaata
    10381 tgcagctata gaagataaga ttgcttcttt tgaagaagct ttgggcttag aagctgaaaa
    10441 taatcttact attacagata ggcttgataa tttaaagctt acaaatgagc agcaaattgg
    10501 gattttagga caaattccta atggatggcc tattgaaaat aaaggcgtta cgggaaattt
    10561 tggatggagg gaacaccctc ttttaaaaag aagagaattt catccaggta ttgatttaag
    10621 agcagcgata ggtacgccta tatatgcacc tgctagtggg gtggttgagt tttcaggata
    10681 tagtgataat ggttatgggt ataatgtgat tttgctacat aattttggct ttaaaactgt
    10741 ttttgctcat atggtgagaa aagatgttgt taaagcaggc cagtttgtca ataaggggca
    10801 actgataggc tatactggca acacaggact ttcaacaggt ccgcatttgc actatgaagt
    10861 aaggtttatt aataaaacct tagaaccttt atatttttta aatttagaaa gaaaaaatat
    10921 gaatgagttt tttaatcaag aaaggagagt tccatggcaa tctttaataa aagcggtaac
    10981 ggcacagcac ttagctccag ttccgaaaca acagtaattt catcaggtgc tagaatagag
    11041 ggtaaatttt attttgcttc tatgcttcat gtggatggag agcttaatgg tatagtgcat
    11101 tctgaaagca tagtagttat aggaaaaaat gggaatttaa aaggtgagct taaggctgat
    11161 aagatagttg ttaatggctg ctttgaaggc gatttggagg cagatagcct tgaaatttta
    11221 gcaggtggcg tggttagcgg gaatatcagc attaaagact tagctataga aaatggcggt
    11281 cgttttaatg ggactagtaa aataaagcaa gaagagcctg taaggttgtt agagaatagc
    11341 tcagaataat gcaagcaaat ttttttgagt atttacaaga ttcaaatata gcacaattag
    11401 tgctttgcga agatgataaa gaatcttttt tgctttctca agttgctctt tttaaggatc
    11461 taaaaacctt tgttttacct gattttagag ctgaattcgg agatgattta agggcttttt
    11521 ccaaggagct ttttgagctt tgcaaggttt taaatgctta tcacaaggaa aaagatacta
    11581 aaattcttat ttcccctttg tctaccatac ttaaaaaatt acccggtcaa aaacatttaa
    11641 aaaattacaa actttctaag aaaaatgttt ttaatttaag tgaatttaaa aatgagctca
    11701 acaagcttgg atatgaattt gtggatatgg ttcaagataa gggtgaggta agtatacgcg
    11761 gagagattat tgatatattt tgtatcaatg aagaattacc tactagggtt ttgctttttg
    11821 gagatgagtt ggaaagcatt agaaaatttg atcctatgaa tcaaaaatca tttcccaaag
    11881 aatatgaaga acttgaaatt tgtccttttt tgacatattt ttctgaggaa aattatgaaa
    11941 attttaaaga caaattagaa aatttcaata gcgatgtttt gattaatgat attaattctt
    12001 taggattttg gtgtattgat gatttttgtg attatttaga acttgatttt ataagtatca
    12061 aaaaattcaa tcaagaagaa tgggataaag atcttagcaa aatcaatgct aaaattatac
    12121 cccaagcctc tgtttataag gatttaaaaa gttcttacaa taaagacttc ttttctttgc
    12181 aacaaaataa aaaaattacg attttggcta aaaatgaagc tttgtttaag gctttagagc
    12241 ttgaaaatac acaaaatatt tcttttcaaa aaagcgattt gatccttaat ttaattagca
    12301 atcaagaact tatcatctca ttaaatcata aagaaaaaca aaaatataag cgtaaagcaa
    12361 atttgattat agatgagtta aaaattggtg attttatcgt tcatgaggat tatggtgtgg
    12421 gtaaattctt aggtcttgaa atgattagca ttagtggggc taagaaagaa tttgttgcca
    12481 ttgaatatca aaatagcgat aaacttcttt taccggttga aaatctttat atgatagata
    12541 agtatttagg agctagtgga ggcataccgc ttttagatcg cttgggaaaa atgactttta
    12601 tcaggctaaa agaaaggcta aaaaccaagc ttttggctat tgcttctgag attgttatta
    12661 tggcggctaa aagagcttta attaaaccaa aagaaatcaa gatagattat gcagatcaag
    12721 cttattttgt ttcaaaagct ggattttctt atacacaaga tcaaaataag gcttgtgaag
    12781 aaattttaaa cgattttgaa aacggcaaag tgatggatag acttttaagc ggtgatgtgg
    12841 gttttggtaa aaccgaagtt gcgatgaatg ctatttatcc cgtggtaaaa agcggttttt
    12901 gtgctttttt ctttgcgcct accacgcttt tatctcatca gcattataag agtttaaaaa
    12961 agcgttttga gccttttggc attgaagttt ttaaactgga tcgctttaca agcactaaag
    13021 agaaaaaaac tttaatgtta aatttagaac aaaacaaagc ctgcgtggtg attggcaccc
    13081 acgcactttt aaatgtagaa tgtgaaaatt tagcccttgt tatcattgat gaggagcata
    13141 aatttggagt aaaacaaaaa gaaaaattaa aagaattaac ccaaaattct catcttttat
    13201 ctatgtctgc tactcctata ccaaggagtt taaatcaagc tttaagctct ataaaatctt
    13261 atagtgtttt acaaacccct ccagaagata ggcttgatgt tagaaccttt gtgaaagaaa
    13321 atgatgatgc gcttttaaaa gaggctataa caagagaatt aagacgcggc ggacaaattt
    13381 tttatataca caatcatatt gcaagtatag agcaatgtaa aaaacattta cttgatttat
    13441 ttaaaaattt aaggattttg attttgcatt ctaaaattga tgcgaagatt caagaagaag
    13501 aaatgcttaa atttgaaaac aaagaatacg atttactttt aagcacttct attgttgaaa
    13561 gcggtattga tctgcctaat gcaaatacta tgatagtcga aagaagtgat agatttggaa
    13621 tggctgattt gcaccaatta cgcggccgtg taggcaggag tgataggcag gggtattgtt
    13681 attttttagt tgaaaataaa gaagaactta ctcaagatgc acttaagcgt cttgtttctt
    13741 tagagagtaa ttcttattta ggagcaggtt cagttttagc ttatcatgat cttgaaattc
    13801 gcggaggcgg aaatttgcta ggtatcgatc aaagcggaca catagagcaa attggactta
    13861 gcttgtatct taaaatgcta gaagatgagt taaatgcact tactaaaaaa gaaagctttg
    13921 aagagaaaaa aatagactta aaacttacca tcaatgcttt tttaaattca gaacttatca
    13981 atgaagatcg tttaagattg gagctttatc gtagacttag taaatgtaaa aatatagatg
    14041 aagtctatga aattgaaggt gaaatcgagg accgctttgg aaaacttgat ctttatacga
    14101 agcaattttt aatgctgatt ataattaaaa ttttagcttt ggggaaattt aaaaccataa
    14161 gcaattttga gcaaaatata caatttgtaa agatcaatga tgaaaaagag tttattaaag
    14221 caagaagcaa agatgatgat gatattatag aagcagtttt aacgcattta aggaaagata
    14281 aataaatgat tgactgggat aaaacttatg cggcaattta tagatctaga aaagattatt
    14341 taaaacccat tatagatctt gataatatca gcttaaatga tttattgggc atggaagaac
    14401 aaaaaaatgt cctttatcaa aatactttaa attttatcca taataaagga gcaaatcacg
    14461 cacttttatg gggtgctaag ggtacgggta aatcaagctt gattaaggct atttttaatg
    14521 aatttaaaga caaaggctta aggcttgtag agttagctaa agatgattta tttgctttag
    14581 ttgatattat cgatgagtta agagaacagc cttttaaatt tatattattt tgtgatgatt
    14641 tttcctttga aaaaaacgat gatagctata aatttttaaa gcctttacta gagggtagta
    14701 tagaagcacc tccgcaaaat attattattt atgcgagttc taatagacgc catttattaa
    14761 gtgaaagtat gagtgataat caaggagttc aagttgctca tacagagctt catgcaagcg
    14821 atgcggctga ggagagattg agtttaagcg atagatttgg cctttggctt agtttttatc
    14881 aaggaaattt aaacgagtat ttaaagcttg ttgattttta ttttaaagat ataaaatgcg
    14941 ataaagagct tttgcataaa aaagcaaaag aatttgcaaa tttaagagca agtagaagtg
    15001 gaagaactgc aaagcaattt tatttagcct ttaaggagag tattgaatga atggagctga
    15061 tatttttaaa aaacttcttg cttgcaattt ggattttaaa gaatttgatt ggcttgagaa
    15121 tcaaggcttg agcgattttg agcttttaat ttctgtgatt ttaacccaaa atacaaaatg
    15181 ggataatgtc ttaaaggcgt taaataactt aaaaaatgcg cgaatttcaa gcttagagca
    15241 gctttcaaat ttatccaatc tagagcttgc tactctgata aaaccaagtg gattttacaa
    15301 taccaaagct aaacgcttaa aagagttagc aaataagatt ttagatactt atagtaatat
    15361 agaaaatttt aagaaaaatg tagatcgaga atggctttta aatactaaag gtttaggctt
    15421 tgaaagcgtg gatagcattt taaattatct ttgcaaaaga gaaattttgg ttgtggatag
    15481 ctatacgcaa agattggcta cacatttggg ttatgaattt gaaaattatg aagaattgag
    15541 agaatttttt gaaagcggca tagaaaacga gcaagaaaat ttgtgtcaaa ttttagaaaa
    15601 aaaatacgag ctttttgaac tttatcaaat tttccatgct gcgattattg cttttggaaa
    15661 agttgccttc aagggagtaa aattgacttt agagggtgaa aatttgattc aaaatttaaa
    15721 ggaagaataa tgaaagcaaa aggaagtgat ttaattcctg tattgagtat agctggaagt
    15781 gattgtagtg gtggggctgg catacaagct gatcttaaaa cttttagtgc tcacaatctt
    15841 tttggtatga gtgttgtttt gagtgtggta gctgaaaata cagcaagagt gatttcagtt
    15901 catgacatac ccgttcaaag cgtggatgag caaatgcttg ctgtttttga agatatagtg
    15961 ccaaaggcta ctaaaatagg aatgatagga acttgtgagc tgatggagtg tgtggctaga
    16021 aatttagaaa aattcaaacc ccaaaatata gttatcgatc ctgtgatgtt tgcaaaaaat
    16081 ggttttgctt taatgccaca agaaaattgt gattttttta aaaaaaccat agtgaaattt
    16141 gcagatattc ttacgcctaa tatcccagaa gcggaatttc tttgcgattt taaaataaaa
    16201 aatgaagaag atatgataaa agcggctaaa tatttatgta cgcaaggagc aaaagctgtt
    16261 ttgcttaaag gggggcatag tgaagaaaat gccaatgatg tgctttttga tggtaatgaa
    16321 atttttattt taaaaggcga acgcatagaa acaaaaaaca ctcatggtac aggttgtaca
    16381 ctctcttcgg caattgctag taatttagcc ttgggaaaag atttgtataa tgctgtaagt
    16441 gaggcaaaag aatatgtaag aaatgcgatt tattattctt taaatttagg gaagggctgt
    16501 gggccaacta accatttttt caggttttta aatgaaaaat gatttagatc ttagtcttta
    16561 tcttgtagca agtcgtggaa aaaaaagtga cgagcttttt ttaaacacgc ttgaagaagc
    16621 gataaagggt ggagtaagta taatccaact tcgtgaaaaa gaattaagtt caagagaatt
    16681 ttacaagctt ggcttgaaag tacaaaagct ttgcaaggag tatgaaatac cctttttaat
    16741 caatgataga atcgatatcg ccttggcttt agatgctgat ggggtgcatt tagggcaaga
    16801 ggatttagaa gtgcgctttg caagaaaaat tttaggtaaa gaaaaaatca taggcttaag
    16861 tcttaagaac ttagaacaat taaaagatat tgacggggct gattatttag gttgtggtgc
    16921 gattaaggct actccaacta aagaaagttc tgttataagt tttgaaacct tgagtcaaat
    16981 ttgtgaaaaa agccctatag gcgtggtagc aataggcggg attgataaag agctgattaa
    17041 agagctaaag ggcattaaaa taagtggcat tgcagtagtt agagccataa tggatgcgca
    17101 aaatgcttat ttggcaacta aagagcttag gcaagaaatg aatgaaaatt tatcttttaa
    17161 atgagactgt ttttgagggt gtggaaaatc ttgttttaaa tgagatagtt ttttacgatt
    17221 ttggtgtcaa tttagatgaa tttgatgctt tactttgtac ttcaaaaaat gccctaaaag
    17281 ctttaaaaaa aacaaaaaat agtttaaatt tagatattaa tgtatatgca gtagggcaaa
    17341 acactgctca atttgctaag gatatgggtt ttaaaaaggt tcaatttgcg ccaaaatctt
    17401 atggaagtga gctttttaat cattttaaag aggaattaaa aaaccaaaaa tgcctttatt
    17461 taagggctga aaatatagct tctactttaa atttagatct tagaacttat ggggtagatt
    17521 tacaagaaat cattgtttat aagaatgttt ttaaaaaaag caagcaaaca atccttcatc
    17581 ctgctatttt tatttttact tctcctttga gtgtggaaaa tttttttaaa caatatgatt
    17641 taaaaaagga agataaggtc atagcaatag ggcagagcac agcaaaaaaa cttactcatc
    17701 tagataatct ttttataagt tctaaacagg atttaaaaga gtgtgtgaaa ttggctaaaa
    17761 gtcttattta gtttgattcc aaaatgattc ttttgtatgc aagataaagg ttttatttat
    17821 taaaatttca tcattgacat ttttttgtgt atttaacgct atactcatat gcgcgattat
    17881 gataccatct tggcttaaat ttgcatcttt gttgatcgct tgaaatttga aatttttaca
    17941 ctgggctatg ggatagtggt attgtatttt gattttatcg tttaaattag gatagtgaag
    18001 cgtgatagaa tctaaacatt cctttccgtc taatttagct tgataaagta aatatttaac
    18061 gagtttctca tcggctaaaa tttgggcttg taaataataa taagcatctt ttacaaatct
    18121 tggtatataa cttgaagtgg tgatatttaa actaagccat atccctaaag cactgattaa
    18181 aaataccaag gatagtaaaa tataggctcg tttcatatga ataacctttt tgtaaggcaa
    18241 tattcttgct cttgttcttt taaacatatt ttaagttttt gtttttgtat ttcaaataag
    18301 cttacattat ccataaatat agagtattgc tcaagctgat tattaaaata aggatagagc
    18361 tcataatgaa ttttatcttc tttaagaaat aattttattc tagcttggat agggataaat
    18421 ttacccttaa aagaagcagt gatattattt tctgaatgaa tgaatatttt tttaatttct
    18481 ttatttacta aagcataaat gatattttgc tcatcattat acaattcttt tcgattttga
    18541 agttgaagtt taaaattact attgggagaa tataaacttg tattgttttc taaaataagg
    18601 ctagaattta ataatttttc tttattatca tcaagatata ataaatcatc tttaagcaaa
    18661 cagcttatat gatttggctc aaaagtaata ttagtgcaag tttgaagcaa tttttctaat
    18721 cttaacacac ttaaatgagt ttttagtatc aaatctttca tttttaattg ttgattgttt
    18781 aaataataaa attcccacaa tgtccttgat agaaaaagtg ctaaaaatcc gattagaatt
    18841 aatacaagaa tagtttcaaa aagactaaaa gctttattca tcgtaaaaat atagggagta
    18901 atcttgattt tgaatatgta attttttaaa ttgaaagata ttatcattta caaagttttc
    18961 tttaaaatca aaagttttta aattctgtat atgaagtttt atatctcttt gatgaggatt
    19021 ggtataaagt ttatcttgca gtgtgtataa tctttcaaaa taatttaaat aatcatgatt
    19081 gtcatttagc tgataaaata atttagagat acttgtaaaa attaatccta ggataattat
    19141 acaaagaatt aattctaaaa gcgagaatgc aactttcatg ttgcactagc attaagagcc
    19201 tcaaaaaaag tcccacggat acctttttgc tctaatactt taatcccttt tatggtaaca
    19261 cctgcaggcg agcagatatt ttccttaatg atggctgggt gctcgttttc tagcaaggct
    19321 gcagcacttt taaaaagcga acgagtgaga tttaaactca gctcttttga taatccttca
    19381 tacacgccag cattagcaat gctttcagct actaatgcta aaaaagcagg agcgcaaccg
    19441 cttatagcca tggcagcatt catttgtttt tcttcgttta actcataagc tttgccaaaa
    19501 gtatttaaaa tttctatgac ttcatcttta aaatttgaat tttttaaaac ataaggagtt
    19561 gtggaagctt tatatttagc tgctgtattt ggcattatcc ttgcataatt ttgggcttgg
    19621 ataagtttta atttatcaaa atccgtattg gctaaaactg aaattaaaat ttttgccttg
    19681 ccttttaaat ttgctgcgac actttctaag gcataaggtt taaaagctaa gataatattt
    19741 ttattttcta tattaaaatc tttatagagt aaagttttaa aaccttcttt ttctaaaatt
    19801 tgaagctttt ctaaatttct accgactata tagatattat aagaatcttt taatccataa
    19861 gccaaagctt gcgccatcgc accattagca agtatatata aatcagcttt cattacttct
    19921 taatataatt tgcaatttga tccgcttgaa aaaagttagg ataagctaca gtatctaaga
    19981 ttacttgcac catggaatta ttatcaagat taataaccac aggagctagg aaatttacag
    20041 tagattcttc tatactttta gcaattgcta ctatattgaa aattttcata tttgactctg
    20101 gtgtcaaaga aagtaattct tggtagtatg taggtatctc aaattcataa tctggtctta
    20161 taagataagg attaataaga acaaaagaaa aatcttttcc atcaagactt ttaagtctta
    20221 caaacacttc atcaatggtt gaaaattcca tatttttggt ttcttcaaaa cctaagatag
    20281 ggcatttaac agctagtgtc attttttctc ctcgagttta taataaaata ttttatcaca
    20341 aaataagcaa tattagttcc aaaatttaaa tttatttatt tattttcact ataattttaa
    20401 ctagaaataa tcataaagca tttaaaatag tgtatttaac taaaaaatga aaaaggtaaa
    20461 aattaatgaa aaaaaatttc tttctatgta ttttattggg gattttattc agtgcttgca
    20521 gtacaaaaaa tgatgaagga ttgtataatt taagtgcaag tgaatggtat aaacaaatca
    20581 ttaaagattt gcaagataaa gatttggaaa aagctgatga tcattataat ggtatggcaa
    20641 gtgagcatat agcagatccg cttttagaaa caacacaaat tatcttagca caagcacata
    20701 tggatgaaga agaatatcaa ttagcggagt tttatttaga tgagtataat aaaaaatttg
    20761 gaaattcacg caatgcagat tatattcgct atcttaaaat caaagctaaa tttgatgcct
    20821 ttgccgtgcc aaatcgtaac caagctttaa tgcttgaaag ccaaaaagaa atagatagtt
    20881 ttttaaatga ttatccttat acagaatacg aacctttagt acagactatg ttaactaaat
    20941 ttaatttagc tgtattttat ttaaatgata caatacagga tttatatgag cgtacaggtc
    21001 atactcaaag tgctgaaatt taccaagaaa gattgcaaga aagtgagttt tatcaacaaa
    21061 gcattatcaa gccagaactt ccttggtata gaagtatatt tgaaaaattt tagatttaag
    21121 ggaaactgat gcaaattgaa gaaatgcaaa attatccaag taatttacct attttagtag
    21181 aagatgaatt atttttatat ccatttatga ttactccaat ttttattagc gattcagcaa
    21241 atatgaaagc tttggattta gctattaaaa atgattcaat gctttttgta gccccttcaa
    21301 agctcgaaaa tggaagatct tttgatgaaa tttatgattg tggggtagtt ggaacgatta
    21361 tgagaaaagt tcccttgcct gatggtagag taaaaatact ttttcaaggt tatgctaagg
    21421 ctaggattat aaaaccactt tcgagcaagc ccttagaggc taaaatagag ctaattaaag
    21481 aagagttttt agagggcaca aaaaaagaag ctttactgga tgttttaaaa gaaaaagtta
    21541 gagttttggc aaatattagc cattattttt cacctgattt gctccgaact ataaatgagg
    21601 gtttagatgc ttctagaatt tgtgatttga ttttaaatac tgttcgtata aaaaagcaag
    21661 aagcttatcg attttttatc ttaaccgatc tagaagaaaa gcttttaaaa ttaatagact
    21721 tgatagccca agagatagaa gccaataaaa ttcaaaagga aattaaaaac aaagttcatt
    21781 ctcgtattga taaagtcaat aaagaatatt ttttaaaaga gcaacttaga caaattcaaa
    21841 aagaattagg tagtgacaat caaaaagaag acgaagttag agattattat aaaaaattag
    21901 aaagcaaaaa gaaatttatg cacgaggatg cttataagga aattaaaaag caaattgaaa
    21961 aatttgaacg tatacatcag gataattctg aagcttctat gatacaaact tatattgaaa
    22021 ccgctttgga tgtgcctttt gagaaaatag caaagaaaaa acttgatatc aaagaagtgg
    22081 ctaagcagtt aaatcatgat cattatgctc ttaataaacc aaaagagcgc attgaagagt
    22141 attttgctgt tcgtgagctt ttagaaaaac gcggtgtagc agataaagat ggggctaagg
    22201 ttatactttg tctttatggg cctccaggag ttggaaaaac ttcactggct aattctgtcg
    22261 ctaaggcctt aaaaagagaa cttattcgta tagctttagg gggtttagaa gatgtgaatg
    22321 aattgcgcgg acaccgccgt acctatatag gtgcgatgcc agggcgcatt actcagggtt
    22381 taattgaagc aaaacaaatc aatcctgtag ttgtgcttga tgaaattgat aagttaaaca
    22441 gaagctttag aggtgatcct agcgcagttc ttttagaaat tttagatccg gagcaaaatt
    22501 ctaaatttag ggattattat ttaaatttta atcttgattt aagcaaggtg atttttatag
    22561 caacagctaa tgatataagc aatatacctg ctcctttaag agataggatg gaatttatag
    22621 agttaagctc ttacactcca aatgaaaaat ttcacattac taaaaaatat ttaattcctg
    22681 atgaacttaa aaaacatgga ttaaaatcta gtgaattaga tattaatgat gagactatag
    22741 agcttatcat aagcgaatac actagagaat caggggtaag aaatctacgc agaaagatag
    22801 ctgaactgtg ccgtaaaagt gctaaaaaat tacttttaga aaatatcaaa aaagtaagta
    22861 tcaatgttaa aaatttaaat gaatttttag ataaaaaagt ttttgagata gaaaagcatg
    22921 atggagaaaa ccgcatagga caagtcaatg gcttagcatg gactagtgtg ggtggagatg
    22981 ttttaaaggt tgaagcgatt aagatcaaag gcaagggaga gttaactctt actggaagtt
    23041 tgggtgatgt gatgaaagaa tctgctagaa ttgcttttag tgtgattaag gttttaatcg
    23101 atgaagggaa gattaaaatt cctaaaaaga tgattcttga tcctaaaact aatgtttatg
    23161 atagttataa tttgcacatc catgtacccg atggtgcaac tccaaaagat ggaccaagtg
    23221 ctggaattac gatgagtaca gctattgctt cagtttttag tgataaaaaa gttcgttctg
    23281 atgtagcaat gacaggagaa atagatttgg cgggtaatgt attgcctata ggagggctca
    23341 aagaaaagct tatcgcagca tataaggctg atattaaaat agctttgatt ccaaagaaaa
    23401 attacgaaag agatttaaaa gatattcctg atgaggttaa agataatatg aaaataattg
    23461 gagttaaaga ttttgatgag gttttaaaat acgctttagt ttaaaaccta aagcaagtaa
    23521 gaaaaaaggc aaaatattga ttttgccttt tttaataaac ttatagtcct tcgaaaggat
    23581 tatttactac ttcttttcta tctactatat aaggaataag agctacatgt ctagcgcgtt
    23641 tgatagcaac ttctaccatt tcttggtatt ttttgcttgt tcctgttaag cggcgaggca
    23701 tgattttaaa tctttctgat aaagcatgtt ttaacatagc tgtatcttta taatcaataa
    23761 attcaacttt tgcttctgtg tatttgcaat atttgcgaga gtattttctt ttttctgcca
    23821 tagtttatcc tttaaaatgg taaatcggtg tcatcgctat cataagcatc aacatcaatt
    23881 tctttaattt tttcttggtt ttggttagga ttttgtgttt ttgtttgtgc ttgctgtgga
    23941 gcttttttga aattattttc actcatataa ggatcgtaac tttggttttc ataatttgaa
    24001 taattattat tagctccata attatttcca ccattgttaa gatttccacc ttgttgagga
    24061 ttgtttccta gtatttccat gttttcaact tgaacgctgt gcttagagcg catttgtcca
    24121 ttttgatcat tccattgttc aaatcttaaa cgaccttcta taaggacttt agaaccctta
    24181 gagagatatt ggtttgctac ttcagcagta cgaccataaa agctaatatc gataaagcaa
    24241 gtttcttctc gtctttctcc atttgtggta aaccttcttg ttactgcgat agccgaagct
    24301 ccgatagcgt ttccattttg accataacgc atttctatat cgcgtgttag attacctacc
    24361 aaaacaactt tattaaacat ttttttcctt attgaatttc aggcgcgtct aaaggtttga
    24421 tctctttttt agactgtttg atgccatggc ttagtttttc ccaagctgca atttcttttt
    24481 tattttcata ttttacaatc aaaaatctta ttacttcctc tgtaattctt aaaattcttt
    24541 caagctctgc aattaagttt gtaggagctt tgaaataaat tacaaaataa gttcctcttt
    24601 cgtatttttt gattttatac gctaattttc tagtgcccat tggaacaacg gtttcaattt
    24661 ctgcaccatt ttttacaagg acttctttta cgaattccaa ctttgcattc acttcctctt
    24721 cggtaagcgt tggttttaaa ataaataaaa cctcataatg tttcatatat tctccttttg
    24781 gatgttaagc ctatgttttt cacaggcaag gattttgcaa agtttttaca atgcaaagct
    24841 taattatatc aaaatatact taatctttac ttttcgggcg tcaatagaga atgtttaatt
    24901 tagttttatg ttgattatca tttgttactt aattacaaca tattaaaaaa aattaatatt
    24961 tatatacttg cttattttga ttttatgtta ttatttattt tgatggtacc tgagtttaga
    25021 taattaaaat acgggaggat atttcatgca aaatgcaaaa cctatacgat ggtttacttt
    25081 atattgtttt agtgattggc gggggaacgg tttttaaact ttcttcttta aaagatgctt
    25141 tttatgtacc tatgcaggaa tttatgaatc ttagcaatac tcaaattggg cttgcgcttt
    25201 cagtatatgg gatagttcag actgtaggaa atttcgcttc tatttatata gcagatagat
    25261 tttccaaaaa aattcttatt cctttttcat tgatttgcgt tggcttggtg ggaatttata
    25321 tttctacttt tccttcattt tatggaattt tgattgcttg gggtttgctt tctttgtttg
    25381 gtgaagtggt gtattggcct gtgcttttaa aggctattcg tttacttgga gacttactca
    25441 acaaggaaga ctttttggat ttttagaagc agggcgtggg gttgtagata ctatagttgc
    25501 ttttagtgct ttagggattt tcttactttt gggttctgga gcaggtggac ttaaagccgc
    25561 tatacttttt tatagtgctt gtgtaattat tgcgggtata ttagcatatt ttctacttga
    25621 agatgataag atcagcacta aagatgacga ggggcatgaa atcagtaaaa ataaagctgc
    25681 ttggaatgga gttataaaag ctgttaaaac acctgaaatt tgggtagttt ctttgacaat
    25741 ttttactatt tattcggtgt attgtggact tacatatttt ataccttttt taaaagatat
    25801 ttatggtatg ccagtagctt tggtgggtgc ttgtggtatt atcaatcaat atactttaaa
    25861 attggttgga ggaccaattg gaggctgttt gacagataaa actttccgtt cttctacaag
    25921 atacttgcgc tttgctctta ttttggctgc agttgcaatt ttaattttta tttttatgcc
    25981 gcatgaaaag ttaaatattt attttggaat gagtttaact ttagggtttg cagctattgt
    26041 ttttactatg cgtgctacat tttttgctcc tgtggatgag attgaaatgc caagagagat
    26101 cagtggtgct gcgatgagta tagcttgtat atttggttat tctccacaac ttttttgttt
    26161 cgcgctttat ggttttatta tagatcagtt taaaggttta ttgggatatc aaatcgtttt
    26221 tgccttaatg ggattttttg cgatttgtgg agtgattata acaactatct tgcttagaat
    26281 gatagctaag aaaaaaacat tacaagaggt agcgtgatga aaattggttt agaaacagaa
    26341 agtatgcacc tttggtttca aaatggcaga atggatatat tttcttatat cgattttgct
    26401 gaggagctag gttgtgatgg cattattata aatattatca aagattttgg cttggatgag
    26461 gagtggggct gtttaggaag caacgacgag agtcatctta aaaaaattaa agaaaaatta
    26521 gacacgtatg gtatgtattg tgagattgat tctaagggtt ttgataagga caaatttgaa
    26581 aaaattgcga aagtttctca gcttttaggg gttaaaatca tccgttctta tgtccccttg
    26641 acagacaaga ataaaaaggt taaaaatgct agcgatggag cttatgatga ttctaaaatc
    26701 acggccaaat ttgacaagag tgaattttta agtacagcag atgagatcaa ggctttaatt
    26761 ccgcttttag aagagtatga ttaaaacttg ccatcgaaaa tcacgaatat caaacttctg
    26821 atgatttgct tgaattatta aatttgattc atcatcctag aataggattt ttatatgatt
    26881 ttgggaattc aatgatggct tatgaagagc ctattaaagc ttgtgagaat atggctaaac
    26941 atacttttag tacacattgt aaagatcata tcgtatttat agaagatgat actaagtatg
    27001 tatgtggcgt gcctttaggt gagggaaa
//
LOCUS       DARAII010000010        25752 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.010, whole genome shotgun sequence.
ACCESSION   DARAII010000010 DARAII010000000
VERSION     DARAII010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25752
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.010"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            201..1982
                     /locus_tag="SB143_000361"
     CDS             201..1982
                     /locus_tag="SB143_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEF9748930.1"
                     /translation="MQRRVFLKGSALGSMVAFFGGSNLSAAVLKDKELLGFKAVSAST
                     KDEVIVPEGYEAKVLISWGDPLFSKAKAYDESKNIDMNAVDNARFVFGDNNDGMSFFS
                     LSKNRGILAINNEYINPEIMFNHQGKNLSKEDVLYEQASVGVSVLEIQKKGNEWAVVL
                     DSKYNRRIDANTKMEVSGAAKKEVLKDKKFAYGTFANCANGQTPWGTYISCEENFDDY
                     FGSSDENLKFDENFKRYGFKTKSEYGWEKFDERFDLAKNLDEANRFGWIVEINPFDAK
                     STPIKRTALGRFKHENAEFIVEKDGLVIVYMGDDEIDEFIYKFVSKHKYVKGGDTSKI
                     LDEGTLYVGQFNGNVGDFRGSGKWIALEYGKNGLDESKGFKSQADILINTRLAASVVG
                     ATPMDRCEWIASHKESGSREVFATLTNNKNRTQANAANPRTKNLYGQILKWIPKNSHK
                     DDEFTWEIFTLVGNPDNQKGLNKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KGEYAGMGNNCMLAANPKTGEIKRFLTGPIACEITGIAFDEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSIVMIRKLDGGVIGA"
     gene            complement(2107..3045)
                     /gene="trxB"
                     /locus_tag="SB143_000362"
     CDS             complement(2107..3045)
                     /gene="trxB"
                     /locus_tag="SB143_000362"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEF9748931.1"
                     /translation="MLDVAIIGGGPAGLSAGLYTTRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQISKNEDGSFTIRLEGGKTE
                     LAKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASIDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVNLKMQTNVPGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(3181..3495)
                     /gene="trxA"
                     /locus_tag="SB143_000363"
     CDS             complement(3181..3495)
                     /gene="trxA"
                     /locus_tag="SB143_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEF9748932.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(3550..3888)
                     /locus_tag="SB143_000364"
     CDS             complement(3550..3888)
                     /locus_tag="SB143_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEF9748933.1"
                     /translation="MGFASYLSGILGEDKACEFLKKQKFEILKRNFRSKFGEIDIIAK
                     KDGILHFIEVKFTQNNYEVSERLNVKKYEKILKTIEFYELKHGILDDFQMDLICISDD
                     MIQFFENISF"
     gene            complement(3888..5138)
                     /locus_tag="SB143_000365"
     CDS             complement(3888..5138)
                     /locus_tag="SB143_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEF9748934.1"
                     /translation="MKVAILGYGVVGSAVARVLIQNKEIIRARCGQDIIPIVALAKSQ
                     KENALIPIVTNVDEILQRDDIDVFVELMGGVETPFKIISEILKKNKPVVTANKAMLAY
                     HRYELEELAKNTTFGYEASVAGGIPIIKALKEGLSANNILSIEGILNGTSNYILSAMN
                     SKGLNFDDVLKKAQELGYAEADPTFDIEGQDAAHKLLILASIAYGLRAKPEDILIEGI
                     SKISAEDMYFAKEFDFTIKLLGIAKAQNSIVELRVHPTMISKDKMIAKVDGVMNAISI
                     VSDILGESLYYGAGAGGNATASAVIADLMDIARNEPKGPMMGFENNLNFKLLNRDEIY
                     TKYYLRLKVEDKIGVLSKITQFMSENNISIDSFLQKPKQGETYSTLFFTTHHTFEKSI
                     QNLLSILEKQDFIKAKPFMMRIEE"
     gene            complement(5140..6345)
                     /locus_tag="SB143_000366"
     CDS             complement(5140..6345)
                     /locus_tag="SB143_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEF9748935.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGKDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYGVNLDPESEVVATM
                     GSKEGFVNLARAIINPGDVAIVPAPAYPIHTQAFIIAGGNVAKMPLKYNEKFELDENK
                     FFEDLDKTLHESIPRPKYVVVNFPHNPTTVTCEKSFYERLVATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEVEGAKDVAVETYTLSKSYNMAGWRVGFTVGNKRLVAALKKIKSW
                     FDYGMYTPIQVAATIALDGDQSCVDEIRATYDKRMHILLEAFENAGWKLHKPRASMFV
                     WAKLPESKMYLKSLEFSKQLLQHAEVAVSPGIGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKEE"
     gene            complement(6358..7164)
                     /locus_tag="SB143_000367"
     CDS             complement(6358..7164)
                     /locus_tag="SB143_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748936.1"
                     /translation="MVKKIFIFLFLANSVFAVSSLELVKNLVANPSKDSQLRLLFPSS
                     SYMDNKGNPDIAKISRILKTNSLINLTLPEPRTLKLNFKAKADSVVFFKILTDALTNL
                     GYIYFIPTDMILRDGNIDYTIQVESQYILDPGALYALLKDNSVYIDNIKRIGTYDYEY
                     DLNFENAQLNTNIDLKLNSTQALERPLKDYVFTLQGASNLMIDAHDADFWFPKVLFLD
                     KNLNLIKAVKSQAQNNHFSELIPSGAVYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(7158..8105)
                     /locus_tag="SB143_000368"
     CDS             complement(7158..8105)
                     /locus_tag="SB143_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748937.1"
                     /translation="MLNWKKIEDLNLKEVAARTKIELEFLEALVKKDFATLNRFNVRG
                     FVKILSREYELDFTDFNEEFETYLNENNLNDTTTKPKMITPKLDAYSQKSTSFVSFII
                     IVIIIALIGFGIYYFDYIKSFFQKDQNNSSAAVVDIIGKAQSNLKALENNVVVIDNQA
                     EENETEANLTQIQNTELNNTKEEIKQISTTPNNTNANEENLSTNDSLATTNQEVAEVS
                     KALNKEAHFKASGKIWIGLIDLSNYRKTSLVKENDFNLSLEVNRLVLTGAAALSVFDE
                     NGKEQKFPAGNSKRFLIKDGKITSISAAEFMKLNKGKEW"
     gene            complement(8098..8781)
                     /gene="rlmB"
                     /locus_tag="SB143_000369"
     CDS             complement(8098..8781)
                     /gene="rlmB"
                     /locus_tag="SB143_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEF9748938.1"
                     /translation="MIVYGKQIFFYILERHKELINELYLAKECDKETFKKIASSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKEYEFKDLHTLKKGEFIAILYGISDVGNIGAIVR
                     TAYALGVDGLIFIGERLAMEGVIRTSSGAALDLEIALNNDIFTVLNELKQVGFKLFAS
                     ASGGKQIHHYKVDKGKKALILGSEGLGLSAKIIKKCDECVGIEMKNNFDSLNVSVAFA
                     ILCDRMINA"
     gene            complement(8794..9618)
                     /gene="rsmI"
                     /locus_tag="SB143_000370"
     CDS             complement(8794..9618)
                     /gene="rsmI"
                     /locus_tag="SB143_000370"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEF9748939.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDIFFCEDTRVSKSLLSLL
                     SSKFEIDFGDKKFISFHTHNEKKVLENLDLEFFNQDIAFLSDAGMPGISDPGQFLIDF
                     ALENDIQFEVLPGANAALVALVSSALCEKEFIFMGFLANKGKERQKDIQKILNHPYPS
                     VIYESPKRILSLIEQIAILDSQREVFVIKEISKKFEAKFKGKAIDLFNELKQVNLKGE
                     WVVVLAKNDKDNISHSLCENDILELEIPLKTKSKLLAKMNGKNPKEIYQKLLLSQS"
     gene            complement(9621..9821)
                     /gene="rpmE"
                     /locus_tag="SB143_000371"
     CDS             complement(9621..9821)
                     /gene="rpmE"
                     /locus_tag="SB143_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEF9748940.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFVTKSNKSELRVDICSSCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(9900..10553)
                     /locus_tag="SB143_000372"
     CDS             complement(9900..10553)
                     /locus_tag="SB143_000372"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEF9748941.1"
                     /translation="MQFLYHKQAGEEILKLKGEEFAHLKARRIKENEILSLRNLEDDF
                     IYEYKISNLDRNSCLLYFLHKHFKSHPQSELDLALAVIDTKILEKTLPFLNELGVKKL
                     HLVFTEFSQRNFKLDFERLEKIIISSCEQCGRSHKMQIQSYKNIQEFSKVFSDAVLVD
                     FEGEVKEFDKTRLYFIGPEGGFSPKEKQMFKEKICLKVPNILRSQSAAIAVAAKILL"
     gene            complement(10554..10961)
                     /locus_tag="SB143_000373"
     CDS             complement(10554..10961)
                     /locus_tag="SB143_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748942.1"
                     /translation="MDKSYEFFLALHLYSLYASGFLMFFYLVLTQGNFKTEFIFIRRI
                     RLFLPIYYVFLALMLFTGSLLLAIKQFQTHLNLWLMIFSWIFIFALAIFHFIQFKKAR
                     RLRRYITFRRISFMILFCELVLLILPFLTGKYL"
     gene            complement(10962..11384)
                     /locus_tag="SB143_000374"
     CDS             complement(10962..11384)
                     /locus_tag="SB143_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEF9748943.1"
                     /translation="MGKNLSILISLFAVLFLNACSDDKEFNHKNQNTTEEIVQIEQND
                     EKTEFSDTNLPLPVDDEASISEDYDVNPSVINSLYKQKCATCHGEKGEVKTKKGIAIK
                     NLSSEKFIQRLQNLKDEAHNFLTQEQRENLAKYISKEK"
     gene            complement(11384..11965)
                     /locus_tag="SB143_000375"
     CDS             complement(11384..11965)
                     /locus_tag="SB143_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEF9748944.1"
                     /translation="MIIRKLFEFENAHIVRFCSSSRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTHMRQIIDSFDHAITLFNQDDESYLNEMKKYSQRWISLPVNVSAEN
                     FCRVFFILIDALLKQTKMINGEQGVNLQSIIVHETRTGYAQGFKEDAYSPTMPKITLE
                     DIEFSPAIKAEWNDIEFYDKLKNLHIFTNPKEV"
     gene            complement(11962..12705)
                     /locus_tag="SB143_000376"
     CDS             complement(11962..12705)
                     /locus_tag="SB143_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEF9748945.1"
                     /translation="MQLVESFLSIQGEGKYSGKLAIFMRFAGCNFNCSGFGVKLIKNG
                     KTLKGCDTIRAVFTKEFNEEYEILNASELFKRVLDLKKDFNPIVVITGGEPLIHHENP
                     EFIDFIQALLKNNFEVHFESNGSIELDFEKYPFYKECVFALSVKLQNSGMGKEKRLNF
                     NALKGFKHYAKDSFYKFVLNSSQLESLSLEILEILEKAPNEIFCMPMGENEQNLKQNA
                     LKIAEFCIKNGYNYSDRIHIRLWNNKEGV"
     gene            complement(12708..13670)
                     /gene="moaA"
                     /locus_tag="SB143_000377"
     CDS             complement(12708..13670)
                     /gene="moaA"
                     /locus_tag="SB143_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEF9748946.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFNHQPKENLLS
                     FEELFLFVKVAIDEGIEKIRITGGEPLLRKDLSVFIKMINDYKKDLDLAITTNGFLLK
                     DFAKDLKDAGLKRLNISLDTLESKKAKILAQKDVLDSVLAGIDEALSVGLKVKLNTVV
                     LKGLNDDELIPLLEFAKSKNIQIRFIEFMENIHAYGKLQGLKRDEIIQILSQKYQVKL
                     IKKAEKAPVSIYSADGYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDINAAANILQEVLRNKPEKNRWSVVDNETSSRAFYQTGG"
     gene            complement(13686..14204)
                     /locus_tag="SB143_000378"
     CDS             complement(13686..14204)
                     /locus_tag="SB143_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748947.1"
                     /translation="MSNDVLYLVFMIVLLVAILAYMNIKDKESSAKINKLQGVVEDIT
                     KELHYLRKELGVKDEGDQEEEDYKITLLKEEIQITLEKQISAKITPVLRTLKTMEHII
                     EDFQNEQQNRILNLEQKAQSMTKLTPNYDTEEQKIVDLFKEGKSIEQIAKDLRIGTGN
                     VELVLKFKQLIK"
     gene            complement(14197..14697)
                     /locus_tag="SB143_000379"
     CDS             complement(14197..14697)
                     /locus_tag="SB143_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748948.1"
                     /translation="MEISLFKAGFEASLECCDIENNHFLQEYLKLGAISQLSKWKKLA
                     LRVDFDEGEKIIFDLLLSLKEDILRLEDSLDKNKDLLVLKQKGVVESLNFEYLNFLDE
                     ILEEGKEYYIRFDLNNQKMAIFAKAQNKKLAQIIKIKPEDRIAFDAFVVQLQRDMIRN
                     KKDKNE"
     gene            complement(14688..15572)
                     /locus_tag="SB143_000380"
     CDS             complement(14688..15572)
                     /locus_tag="SB143_000380"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEF9748949.1"
                     /translation="MNTIWNKFKDILELVVFKHSIFALPFLFSSMIVASKLVNDSAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIIL
                     NAIIFILCSYFINTLAFYLSFPVLFVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     VMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKVGLHSIPAKFGSKATLFISAF
                     CHVLAVLFWLLFVWQVWGVALGNIALFGVIISGIILAFEHKIVHKNFAHIDKAFFTLN
                     GYLSIIFFIFIWVDLVWK"
     gene            15644..16513
                     /gene="miaA"
                     /locus_tag="SB143_000381"
     CDS             15644..16513
                     /gene="miaA"
                     /locus_tag="SB143_000381"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEF9748950.1"
                     /translation="MFFQIALIGTTASGKTYIANALAKEFNAVVLSLDSLCVYKEINI
                     ANAKPSKDELANLNYFGVNLLSVDEHFNVELFIREYQKAKEFALINDLPLIIVGGTGF
                     YLKTMIDGLSQKIQDTTSTLSNDEIYALLLKIDPAYKIEKNDTYRLKKWLSIYESTNE
                     IPSDFLKKTQKDGVLKDIEIYELVWDREILRKRIEARTKEMIDNGLIEEARMLFSNFD
                     NNLKALNSIGLKECKEYLENQISLKELESLISIHTSQLAKRQRTFNKKFQSTPLEFSK
                     ALELLRNKFLAKE"
     gene            complement(16499..17062)
                     /locus_tag="SB143_000382"
     CDS             complement(16499..17062)
                     /locus_tag="SB143_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump"
                     /protein_id="HEF9748951.1"
                     /translation="MDFYSLILLSCALAMDAFAVSLCKGFSVKKLNLKHYIITGVYFG
                     GFQALMPAIGYAIGITFASFIASIDHWIAFVLLSLIGLKMIKESFENENCDTNSNQFG
                     FKIMFALAVATSVDALAIGVSFAFLDVDLFLALFLIGSITFILCAIALELGNKFGTRF
                     RNKAEFLGGAVLIILGIKILVEHLFFS"
     gene            17235..17309
                     /locus_tag="SB143_000383"
     tRNA            17235..17309
                     /locus_tag="SB143_000383"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17268..17270,aa:Glu,seq:ttc)
     gene            17470..17877
                     /locus_tag="SB143_000384"
     CDS             17470..17877
                     /locus_tag="SB143_000384"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HEF9748952.1"
                     /translation="MSHDTNFFLLYFKDKIPKDSLIFLKESLEKASEEQKEKLLFTKL
                     KNPLYGLLFAFLLPGLDRIYNGNIILGILKIISAILVSIGLIIAEDKNDESTMLIFIN
                     LFFILSVWVILDYFLVWKDICQNNLKKIFEVLQ"
     gene            18008..18301
                     /locus_tag="SB143_000385"
     CDS             18008..18301
                     /locus_tag="SB143_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HEF9748953.1"
                     /translation="MVGLVVSITVGLFGIDRFYKGDILLACIKLAFFIIPLFATFAAF
                     IALLDESHSIFIDYFAIFALMFVVASIWKLVDIYLVFVGIKKDNFHKILNFFS"
     gene            18407..19069
                     /gene="sodB"
                     /locus_tag="SB143_000386"
     CDS             18407..19069
                     /gene="sodB"
                     /locus_tag="SB143_000386"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEF9748954.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFASKDLVSIIKSSSGGVFNNAAQVYNHDFYFDCIKPITGCGCGGSCQSMDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
     gene            complement(19096..20301)
                     /locus_tag="SB143_000387"
     CDS             complement(19096..20301)
                     /locus_tag="SB143_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEF9748955.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIT
                     SFIKERLGVEIQTAQIDADDSDAVVELIKKTGAQILLNVALPYQDLSLMDACIKAGID
                     YVDTANYEHPDLAKFEYKEQWARNDKFKEAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWEKGEWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVM
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGIKDGKDRQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMDELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(20337..21245)
                     /locus_tag="SB143_000388"
     CDS             complement(20337..21245)
                     /locus_tag="SB143_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9748956.1"
                     /translation="MMLEIKNLSKNFGKIQALKNINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAQLEQASSCEFLKCKGEVAMMFQNYALFPHLNVEKNILFALYDKKDKKQILEDL
                     LKTFEIENLRYKKIDEISGGQAQRVAFARAVARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKLIQKQKITAIMVTHDIEDAYCMSDKIAFLDKGEILAHADPKELYFKPNHKSARIL
                     PDLNIIEEELDLEDEFFQWIASKNYTFGYAELKIGNRFEATILQKEFLGAFYRLKVRY
                     KNIDFFMLLSSNYTLKEKINFDIINF"
     gene            complement(21229..22845)
                     /locus_tag="SB143_000389"
     CDS             complement(21229..22845)
                     /locus_tag="SB143_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEF9748957.1"
                     /translation="MLKTLKYYKIGAILLALFLTLPIFGIFAELFYILFQNFNTSNLA
                     EISSIKENLSHFFDYLFLKFIKDTLIVSIGVLLLSLILGVSSAYLMANYNFYFCRILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHEVFGFRIDFFNHYGVIFVLGISLYPYIYL
                     FAKTAFKSEAIEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSILSGILMIFVFLIMYIDYYYKNKHHYSFNQNL
                     TLFIKKRKLSHIKQILACFYCFIIALLGFILPFIWLVYWGLKDFKLFEAEFYIISFQT
                     IILAFITALITTLLAYFLMFSSRIIKNNFFSLCILKLSSLGYSIPAAALGISMIVLFV
                     FLDKIFHLNLLGTSLIILVFAYIIRFLASAIYSLEGGYNKIHLNTDEASLNLRPSYLI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLLIVLLSLIVVIWMDKITRKDDVRN"
     gene            complement(22845..23849)
                     /locus_tag="SB143_000390"
     CDS             complement(22845..23849)
                     /locus_tag="SB143_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009881850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEF9748958.1"
                     /translation="MKKIFSLCLLGFSLLGAAELNIYSARHYDADFQIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNSGLLSPVKSKYLEDTIP
                     AHLRDKDGEWFAITKRARIIAYNKNANTDISKMKNYEDLAKPEFKGQIVMRSATAPYS
                     KTLLASIIANDGDENAKVWAKGVLDNLATKPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQEAAKKFMEFMLTP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSQIAEKVKEAVKIYDQVGFR
                     "
     gene            complement(23850..23972)
                     /locus_tag="SB143_000391"
     CDS             complement(23850..23972)
                     /locus_tag="SB143_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748959.1"
                     /translation="MKKLVLFLFCLGFAFACSEHSNADFKDHDKTKYNSQYKDK"
     gene            24219..25061
                     /locus_tag="SB143_000392"
     CDS             24219..25061
                     /locus_tag="SB143_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HEF9748960.1"
                     /translation="MKFYTILNILFISFMLSACAVLQKSPPLQENKDFYILDTHTQKK
                     ISFEDMIVELLKADVILLGEKHDEAKHKISQVMIFNALEGNLSSQNISFDVALEMLAS
                     TEQNHLDKAFKNKKTIKTNELTNALNWDKGWKWKDYDQFVNAVFYSKAKILGANLSRS
                     EITSIYNGVQPLKGYVSTTNEVKKQIFDIISLSHKLNPQENKELLDKLVEIQQFKDRR
                     MADVLVHHTNKVLLLAGSYHTSKKIGIPLHIQDFKSDKKIVVVNLNYGERDLKDSDYT
                     FIYY"
     gene            25071..>25752
                     /locus_tag="SB143_000393"
     CDS             25071..>25752
                     /locus_tag="SB143_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEF9748961.1"
                     /translation="MKKLSLFCVMGLCFANFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTRDNLNSNTQSIDSIVRSVPGAYTQVDQAQGGVSVNIRGMTGLGRVNTQIDGV
                     TQTFFGSASDDSFHGQIGTSSFTAPIDKNFLVALDVNRGTFSGANGANALMGSANFRT
                     IGVDDIVQEGRVFGFLGKYSYGSNAIGPNFMGAIAGKTMLENNANLGILFAYSGQNVS
                     QNYKIGGGG"
BASE COUNT         8877 a         4250 c         3638 g         8987 t
ORIGIN      
        1 atttgttgat acttttattt attactcatt gatatcttta attcattatt caccaatacc
       61 tagataggtt gggtgttgat gaaatttatt tacaaattct tcttatatat ttcttatctt
      121 acttatttga aagtttctaa aaagtttcca aacatttcta tactttcatt gttttaattt
      181 caatacggag tagaaaacaa atgcaaagaa gagtattttt aaaaggttca gctttaggtt
      241 ctatggtggc tttttttgga ggttcaaatt taagtgctgc ggtacttaag gataaagagt
      301 tgttaggttt taaagctgta agtgcaagca caaaagatga agtcatagtg cctgagggct
      361 acgaggctaa agttttgata tcgtggggag atccactttt tagcaaagca aaagcctatg
      421 atgaaagtaa aaatatcgat atgaatgcag tggataatgc tcgctttgtt tttggagata
      481 ataatgatgg tatgagtttt ttttcacttt caaaaaatag aggaatttta gccataaata
      541 atgaatacat taatcctgaa attatgttta atcatcaggg taaaaacttg agcaaagaag
      601 atgttttata tgagcaagca agtgtgggtg taagtgtatt agaaattcaa aaaaagggta
      661 atgaatgggc tgtagttttg gattctaaat acaatcgtag aattgatgca aatactaaaa
      721 tggaagtaag cggagcagct aaaaaagaag ttttaaaaga taaaaaattt gcttatggaa
      781 cttttgcaaa ctgtgcaaat ggccaaactc cttggggaac ttatattagc tgtgaagaaa
      841 attttgatga ttattttgga agttctgatg aaaatttaaa atttgatgaa aattttaagc
      901 gatatggctt taaaacaaaa agcgaatacg gctgggaaaa atttgacgaa agatttgatc
      961 tagctaaaaa tttagatgaa gcaaatcgtt ttggttggat agtagaaatc aatccttttg
     1021 atgcaaaaag cactccaatt aaaagaacag ccttaggtcg ctttaaacat gaaaacgcag
     1081 aatttatagt agaaaaagat ggtttggtta tcgtttatat gggcgatgat gaaatcgatg
     1141 agtttattta taaatttgtt agcaagcaca aatatgtaaa aggtggagat acaagtaaaa
     1201 ttttagatga aggaactttg tatgtaggcc aatttaatgg caatgtaggg gattttagag
     1261 gcagtggaaa atggatagct ttagagtatg gtaaaaacgg cttagatgaa agtaaaggat
     1321 ttaaatcaca agctgatata cttatcaata cccgccttgc tgcaagtgta gtgggtgcaa
     1381 ctcctatgga tagatgcgag tggatagcaa gccataaaga aagtggctct agggaagttt
     1441 ttgctacttt aaccaataac aaaaaccgta cacaagctaa tgcagctaat cctagaacaa
     1501 aaaatcttta tgggcaaatt ttaaaatgga taccaaaaaa ttcacacaag gatgatgaat
     1561 ttacttggga aatttttact cttgtgggca atcctgataa tcaaaaaggt ttaaacaaag
     1621 ggtcaaataa tatcactagt gaaaataaat ttaattctcc tgatggactt aaatttgata
     1681 gagatggaag actttggata caaacagatg gttcttattc taataaaggc gaatatgcgg
     1741 gaatgggaaa taattgtatg ctagcggcca atccaaaaac aggtgaaatc aaacgctttt
     1801 taacagggcc tatagcttgt gagataacag gaattgcttt tgatgaggat tatactacta
     1861 tgtttgtagg tatacaacat ccaggagaag gacttaaggg tagtactttt ccttatggaa
     1921 aaacaccaag atcaagtata gtaatgataa gaaaacttga tggtggagtt ataggagctt
     1981 aattaaagat ctaaagaact tataataata tctcttttat cccaaagatt aaataagatc
     2041 aaaattataa gttcttcttt atttagattg ttttaagtct taaaaaatct aggacaaatt
     2101 cctagattaa tgcaagcttt ctatataagc catagcacta agcgctgcta cggctccatc
     2161 gcctgcggca caaataactt gttttggagc atcttttcta agatctcctg ctgcaaaaag
     2221 cccaggaaca ttagtttgca ttttaagatt gacacttact tgcccgcctt cttccatatt
     2281 gcacaaaaac ttaccatcgt cttgttttaa aatttcattt cttacattaa gtcccacaaa
     2341 ggtgaaaatt cctggcacat ttaaatctct aatgctacca tcttttaatt ttactttcac
     2401 gcctgtaaca cccattttat caccatatac ttcatctatg cttgcactag tgataagttc
     2461 gattttttca tttttcttca ctttttctac tgtagaaggc gcagctctaa attcgtccct
     2521 acggtggatt agataaactt tagagcaaat attggctaga tataatgctt cttctaaagc
     2581 agtatcacca ccacctaaaa ccgctacttc tttattttta tagaaaaaac catcacaagt
     2641 tgcacaagtg cttacaccct tgccaaaaaa ttcatcctca cctttaaaac ctgctctttt
     2701 tggagcagaa ccagtgcaaa ctatcactgc ttttgcaagt tctgttttac cgccctctag
     2761 tctaatggta aaacttccat cttcattttt tgaaatttgt tctacaccta ccatttcatg
     2821 ctttaagcca aaacgcatac attgctcact ccaaggtgcc ataaaagaaa ttccatccat
     2881 aacttgtgca acacctggat aattttcaat ttccgaacta gaagtaattt gccctcctgg
     2941 catccctttt tcaaacatta ctacattttt aagaccaccc ctagttgtgt aaagtccagc
     3001 actaagtcct gcaggtcctc cacctataat tgctacatct aacattcttt ttcctttgta
     3061 atttgaattt tattaagaat gatatacaaa ttattcttaa tagtagttaa taaaaattat
     3121 tatttagtat aaatttgaaa tttttgaata aaaggctagt aaaactagcc ttgaagattt
     3181 ttatagtaaa gaatttaatt tatcgctgat tgcttgtttt gattgagcac caactaattg
     3241 atctaccact tcaccatttt taaagaagat aagagtaggg atagagcgaa cgccaaattc
     3301 agctgctaaa tcgccttgct catctgtatt tactttacaa atttttgctt taccgtcaaa
     3361 gtcattcgca agttcatcaa ttactggagc aagcattctg caaggtccac accatggagc
     3421 ccaaaaatca actaaagcaa caccttcttt tgcttgtgca aaattatcac ttgttaattc
     3481 gatatatttt cccataattt ttcctttcac taatttttgt aattgtattt tattttttta
     3541 aatattagct taaaaactga tattttcaaa aaattgtatc atatcatcac taatacagat
     3601 aagatccatt tgaaaatcat ctaaaatccc atgttttaat tcataaaatt ctatagtttt
     3661 taaaattttt tcatattttt taacatttaa gcgttcagaa acttcataat tattttgagt
     3721 aaatttaacc tcgataaaat gtaaaattcc atcttttttc gcaatgatat caatctcacc
     3781 aaattttgaa cgaaaattac gctttaaaat ttcaaatttt tgttttttta aaaattcaca
     3841 agccttatct tcgcctaaaa ttccactaag atatgatgca aatcccatta ttcttctatg
     3901 cgcatcataa aaggcttagc cttgataaaa tcttgttttt ccaagataga aagtaaattt
     3961 tgaatacttt tttcaaaggt atgatgagtg gtaaaaaata aagtgctgta agtttcaccc
     4021 tgttttggtt tttgcaaaaa gctgtctatc gaaatattat tttcgctcat aaattgagta
     4081 attttagata aaactcctat tttatcttct acttttaatc ttaaataata ttttgtataa
     4141 atttcatctc tatttaaaag tttaaaattt aaattatttt caaagcccat cataggaccc
     4201 ttgggttcat ttcttgctat atccataaga tcagcgataa cagcacttgc tgtagcattt
     4261 cctcctgcac ctgctccata ataaagactt tcgccaagta tatcactgac tatgctaata
     4321 gcattcatca ccccatcgac ttttgctatc attttatctt tactgatcat agtaggatgc
     4381 actcttaatt ctactatgga attttgggct ttagctatgc ctaaaagctt gatagtaaag
     4441 tcaaattctt ttgcaaaata catatcttca gcagaaattt tactgatacc ttcgattaaa
     4501 atatcttcag gtttagcgcg taaaccataa gcaatgcttg ctaaaatcaa aagcttgtgc
     4561 gcagcatctt gcccttctat atcaaaggtc ggatctgctt ctgcataacc aagttcttgc
     4621 gcttttttta gcacatcatc aaaatttaaa cccttgctat tcatagcgct taaaatataa
     4681 ttgctcgtgc cattgagtat accttcaata ctcaagatat tatttgcgct tagtccttct
     4741 tttaaagctt tgataatagg aattccgccc gcaacacttg cttcatagcc aaaagttgta
     4801 tttttagcta actcttcaag ctcatagcga tgataagcaa gcatagcttt gtttgcagtg
     4861 actacaggct tatttttttt aagaatttca ctgataattt taaaaggtgt ttcaacccca
     4921 cccattaatt ccacaaaaac atctatatca tctcgttgca aaatttcatc tacatttgta
     4981 acgataggaa tcagggcatt ttctttttgg cttttagcaa gagcaacaat aggaatgata
     5041 tcttgtccgc atcttgcacg aatgatttct ttattttgaa ttaaaacacg agcaacagca
     5101 ctccctacaa ccccatatcc taaaatagca accttcattt tattcttctt tcaagtattt
     5161 tttaatattg cgtgcagctt gacgaatgcg gttttcattt tctattaaag caattcttac
     5221 atactcatct ccagcttcac caaaaccaat acctggactc acagctactt ctgcgtgctg
     5281 caaaagttgt ttagaaaatt ccaagctttt taaatacatt ttactttcag gcagttttgc
     5341 ccaaacaaac atactagctc ttggtttgtg aagtttccaa cccgcatttt caaatgcttc
     5401 tagcaagata tgcattcttt tatcataagt agcacgaatt tcatctacac aactttgatc
     5461 cccatctaaa gctatagtag cagctacttg tataggggta tacataccat aatcaaacca
     5521 tgattttatc tttttaagag cagctactaa gcgtttattt ccaactgtaa atcccacacg
     5581 ccaacctgcc atattgtaag attttgaaag agtgtaggtt tctacagcaa catcttttgc
     5641 gccctctact tctaaaatag aaggggtttt ataatcatca taagttaaat ccgcataagc
     5701 gatatcagaa ataatataaa atcgctcttt ttttgcagtt gcaaccaatc tttcataaaa
     5761 acttttttca caagttaccg ttgttggatt gtgtggaaaa ttaaccacta catattttgg
     5821 acgcggaatg ctttcatgca gggttttatc caaatcttca aagaatttgt tttcatcaag
     5881 ctcaaatttt tcattatatt taagaggcat tttagctaca tttcctcctg ctatgataaa
     5941 agcttgagta tggataggat aagctggagc tggcactata gccacatctc ctggattgat
     6001 aatcgctctt gctaaattga caaaaccctc tttagagccc atagtcgcta ctacttcact
     6061 ttcaggatct aaatttactc cgtattttct tttataccaa ttgcaaatag ctaggcgaag
     6121 tttataaatc cccatagagg tagaataccc cgaagttttg tctttattgg cgctttcaca
     6181 aagtttatca atgatatgtt gaggggtttt accatcggga tttcccatag aaaaatcgat
     6241 gatatccttt ccagcacgcc ttgctgccat tttgatcgca tttacttctg caaaaacata
     6301 atttggaagc ctttctatgg tattgaaacg aatttcatca aacatttctc ttccttttta
     6361 tttttttagg gtgattttta aacctcttcg gatattgtct aaactataca tatcacttac
     6421 aattgcataa actgcaccgc ttggaataag ctctgaaaaa tgattatttt gagcttgact
     6481 cttgactgct ttaataagat ttaaattttt atctaaaaat aacactttag gaaaccaaaa
     6541 atcagcatca tgagcatcaa tcatcaaatt tgaagcccct tgaagagtaa atacataatc
     6601 tttaagcggt ctttctaaag cttgtgtgga attaagtttt aaatcaatat tagtattaag
     6661 ctgagcattt tcaaaattta aatcatactc atagtcataa gtacctatgc gcttgatatt
     6721 gtctatataa actgaattat cttttaaaag agcgtataag gcacctggat ctaaaatgta
     6781 ttgagattct acttgtatgg tatagtctat attgccatcg cgtaaaatca tatccgtagg
     6841 aataaaatat atatatccaa gatttgtaag tgcgtcagtt aaaatcttaa aaaatacaac
     6901 agaatctgct ttagctttaa aattaagctt taaagttcga ggctctggta gagttaggtt
     6961 gattaaagaa ttggttttta aaattcttga aattttagct atgtctggat tgcctttatt
     7021 atccatatag ctggagctag gaaacaaaag acgcaattga gaatctttag aaggattagc
     7081 aactaaattt ttcactagct ctaaactaga aacagcaaaa acagaattag ctaaaaataa
     7141 aaaaataaag atttttttta ccattcttta cctttattta acttcataaa ttcagccgcc
     7201 gaaatacttg taatttttcc atctttaatc aaaaagcgct ttgaatttcc tgcaggaaat
     7261 ttttgttctt ttccattttc atcaaaaaca cttaaagccg cagctcctgt taaaaccaaa
     7321 cgatttactt ctaaagaaag attaaaatca ttttctttta caagactagt ttttctataa
     7381 tttgataaat caatcaaacc tatccaaatt ttacccgaag ctttaaaatg agcttcttta
     7441 ttgagagctt ttgagacttc tgcaacttct tgatttgttg ttgctaaaga atcatttgtg
     7501 cttaaatttt cttcattggc atttgtatta tttggtgtgg tagaaatttg ttttatttct
     7561 tcttttgtat tgttaagttc tgtattttgt atttgagtta aattggcttc tgtttcattt
     7621 tcttcagctt gattgtcaat cacaactaca ttattttcta aagcttttag attagattgt
     7681 gcttttccga taatatctac aacggccgca cttgagttgt tttgatcctt ttgaaaaaaa
     7741 gatttaatat aatcaaaata ataaatccca aaacctataa gtgctataat tataactata
     7801 attataaaag atacaaaact agttgacttt tggctataag catctaattt aggggttatc
     7861 atcttaggct tggtggttgt atcgttaaga ttattttcat tgagataggt ttcaaattct
     7921 tcattaaaat ccgtaaaatc aagttcgtat tcacgactta aaatttttac gaaaccacgg
     7981 acattaaaac gatttaaggt ggcaaaatcc tttttaacta aagcttctaa aaattccaat
     8041 tcgatttttg ttctagcagc aacttctttt aaatttaaat cttcaatttt tttccaatta
     8101 agcatttatc atcctatcac aaagtattgc aaaagctaca ctgacattaa ggctgtcgaa
     8161 attatttttc atttctatgc ctacacattc atcgcatttt tttattattt tagcacttaa
     8221 tcccaaacct tcacttccta aaatcaaagc ttttttaccc ttatcgactt tataatgatg
     8281 aatttgttta cctccacttg cactagcaaa aagcttaaat cctacttgtt taagctcatt
     8341 taaaacggta aaaatatcat tatttaaagc aatttcaaga tctagcgccg ctccactgct
     8401 cgtgcggata acgccttcca tcgcgagtct ttcgccgata aaaataagtc catccactcc
     8461 taaagcataa gctgttctta cgatagctcc tatatttcca acatcactga taccataaag
     8521 aatagctata aattcaccct ttttaagagt gtgcaaatct ttaaattcat actctttaat
     8581 atctagtaaa aaaccttgat gatttccacc tttagcataa gcttgggctg ttttaaaatc
     8641 aagttttttg atcttaaagc ctgaactagc aattttttta aaagtttctt tgtcgcactc
     8701 tttagctaaa taaagctcat ttataagctc tttatgtcgt tctaaaatat aaaaaaatat
     8761 ctgttttcca taaactatca ttctaaattt tacctaactt tgacttaaaa gcagtttttg
     8821 ataaatttct tttggatttt ttccattcat ctttgccaaa agcttgcttt ttgtttttaa
     8881 aggtatttca agctctaaaa tatcattttc acacaaggaa tgactaatgt tatctttatc
     8941 atttttagcc aacacaacaa cccactcacc ctttaaattt acctgtttta attcattaaa
     9001 aagatctata gccttgcctt taaatttggc ttcaaatttt ttagaaattt ctttaatcac
     9061 aaaaacttct ctttgactat ctaaaatagc tatttgttct attaaagaca aaatgcgttt
     9121 aggagattcg taaataacac taggataagg atgattgagt attttttgga tatctttttg
     9181 gcgttctttg cctttattgg ctaaaaaacc cataaaaata aattcttttt cgcacaaagc
     9241 cgagcttaca agtgccacca aagctgcatt agcaccgggt aaaacttcaa attggatatc
     9301 attttctaaa gcaaaatcaa ttaaaaattg cccaggatca ctaatccctg gcatacccgc
     9361 atcactcaaa aaagcaatgt cttgattaaa aaattccaag tctaaatttt ctaaaacttt
     9421 tttttcattg tgggtgtgaa aagatataaa ttttttatct ccaaaatcga tttcaaattt
     9481 agaagaaagt aaagaaagta aagacttgct tacccttgta tcttcacaaa aaaaaatatc
     9541 gcaagtcttt aaaagctcta aagcacgaaa agaaatatcg cttaaatttc ctatgggtgt
     9601 aggaataaaa taaagcataa ttattgcatt gcgtattttt tcttaaattt ctctacacga
     9661 cctgctgcat ctacgatttt ttcgctacct gtgaagaaag gatggcagct tgaacaaata
     9721 tcaactctta actcactttt gtttgattta gtaacaaaag tattgccaca agcgcagcta
     9781 actttgcatt ctacatattc tggatgaatt tcttttttca tagctttttc cttaaaatta
     9841 aaacaataag cggtgattat attaaattta atataaaaaa aacattaatt taagtaaaat
     9901 taaagcaata tttttgcagc cactgcaatg gcagcacttt gacttctcaa aatattagga
     9961 actttaaggc aaattttttc tttaaacatt tgtttttctt tggggctaaa tccaccctct
    10021 ggacctataa aataaagtcg agttttatca aattccttta cctcaccttc aaaatcaacc
    10081 aaaacagcat cagaaaaaac cttgctaaat tcttgtatat ttttatagct ttgaatttgc
    10141 attttgtgac ttcttccgca ctgctcacaa gatgaaatga tgattttttc taatctctca
    10201 aaatcaagtt taaaatttct ttgagaaaat tcagtaaaaa caaggtgtaa ttttttaact
    10261 ccaagttcat ttaaaaaagg aagtgttttt tccaaaattt tagtatcaat aaccgccaag
    10321 gctaaatcaa gttcgctttg tggatgagac ttaaaatgct tatgtaaaaa ataaagcaaa
    10381 caagaattac gatctaaatt tgaaatttta tattcataaa taaaatcatc ctctaaattt
    10441 cttaaagata aaatttcatt ttctttaatt cttcttgctt tcaagtgagc aaattcttcg
    10501 cccttaagtt ttaaaatttc ttcccctgct tgcttgtggt ataaaaattg catttataaa
    10561 tatttacctg ttaaaaaagg taagattaaa aggacaagtt cacaaaataa aatcataaaa
    10621 ctaatgcgtc taaaagttat atagcgtctt aatctacgag cttttttaaa ttgtataaaa
    10681 tgaaaaatag ctaaagcaaa aataaaaatc caagaaaaaa tcatgagcca aagatttaaa
    10741 tgtgtttgaa attgtttaat cgctaaaagc aaagaacctg taaaaagcat caaggctaaa
    10801 aaaacatagt atataggtaa aaacaaacgg attctgcgga taaatataaa ttcggtttta
    10861 aaatttcctt gagtcaagac aagataaaaa aacattaaaa atccactagc ataaagacta
    10921 taaagatgta gagctaaaaa aaattcataa cttttatcca tttatttctc cttgctgata
    10981 tattttgcta aattttctct ttgttcttgg gttaagaaat tatgagcttc atcttttaaa
    11041 ttttgaagtc tttgaataaa tttttcactg cttaaatttt taattgcaat accttttttg
    11101 gttttaactt ctcctttttc tccatgacaa gtagcgcatt tttgtttata taaagaatta
    11161 ataacacttg gatttacatc atagtcttcg ctgatactgg cctcatcatc aaccggtaag
    11221 ggcaaattcg tatcgctaaa ttcggttttt tcatcatttt gttcaatttg tactatttct
    11281 tcggtagtat tttggttttt gtgattaaat tctttatcat cactacaagc gtttaaaaat
    11341 aaaactgcaa ataagcttat taaaatactt aagtttttac ccattaaacc tccttaggat
    11401 ttgtaaaaat gtgtaaattt ttcaacttat cataaaattc tatatcattc cattctgctt
    11461 ttatagcagg tgaaaattct atatcttcaa gtgtgatttt tggcatagta ggactataag
    11521 catcttcttt aaacccttgt gcatagcctg ttcttgtttc atgtactata atgctttgca
    11581 aatttacacc ttgttcgcca tttatcatct tggtttgttt taataaagca tcgattaaaa
    11641 taaaaaatac acggcaaaaa ttttcagcac tgacattaac aggcaagctt atccagcgct
    11701 gcgagtattt tttcatttca tttaaataag attcatcatc ttgattaaaa agtgtaatag
    11761 catgatcaaa gctgtcaata atttgacgca tatgggtttt taaaagccca aagtcataaa
    11821 ccattcccgc attatctaaa tacttgcttt caagtaaaac ctcaaccttg taagaatgtc
    11881 catgaatact acttttacaa cgacttgaag aacaaaatct aacaatatga gcattttcaa
    11941 attcaaataa ttttcttata atcatacacc ctctttatta ttccaaagac gaatatggat
    12001 tctatcagaa taattataac catttttaat acaaaactcg gctattttta aagcattttg
    12061 ttttaaattt tgctcatttt ctcccatagg catacaaaaa atttcattag gcgctttttc
    12121 taaaatttct aaaatttcta gtgacaaact ttctaattga ctggaattta aaacaaattt
    12181 gtaaaagcta tctttagcat aatgcttaaa gcctttaagg gcattgaaat ttaatctttt
    12241 ttctttaccc atcccgctat tttgaagctt gacacttaga gcaaaaacac attctttata
    12301 aaaaggatat ttttcaaaat caagctctat gcttccattg ctttcaaaat gcacttcaaa
    12361 attatttttc aataaagctt ggataaaatc gataaattct ggattttcat gatggattaa
    12421 gggttctcct ccagtaatca ccacaatagg attaaaatct ttttttaaat caagcacgcg
    12481 tttaaaaagt tcacttgcat ttaaaatttc atattcttca ttaaattctt tagtaaaaac
    12541 tgcccttata gtatcgcaac ctttaagagt ttttccattt ttaataagct ttaccccaaa
    12601 gcctgagcaa ttaaaattac atcctgcaaa acgcataaaa atggctagtt ttccgctata
    12661 tttgccttct ccttgtatac ttaaaaaact ttcaacaagt tgcaaattta acctccggtt
    12721 tgataaaaag cgcgagatga agtttcgtta tctaccacac tccatctatt tttttcaggt
    12781 ttattgcgta atacttcttg taaaatgttt gcagcagcgt taatatcacc ttttctcact
    12841 gcttctttaa tgcttaaagc ctcatcaaaa taaagacaag gtataagtaa accctcagcg
    12901 cttaagcgaa tgcggttgca agaatcacaa aattcatggc tatgtggatc tataatccca
    12961 aattcataac catccgcact ataaatactc acaggagctt tttcagcttt tttaatgagt
    13021 tttacttgat atttttgact tagaatttgt atgatttcat ctctttttag accttgtaat
    13081 tttccataag catgtatatt ttccataaat tcaataaagc gaatttgaat gtttttagat
    13141 tttgcaaatt ccaaaagagg tatcaactca tcatcattta aaccctttaa cacaacagtg
    13201 tttagcttga cttttaaacc tacgcttaag gcctcatcaa tccccgctaa gacactatct
    13261 aaaacatctt tttgcgcgag aatttttgct tttttgcttt ctagggtatc aagagagata
    13321 tttaaacgct tcagtccagc atctttaaga tctttagcaa aatcttttaa taaaaaacca
    13381 ttcgttgtaa tggctaaatc aagatctttt ttataatcat ttatcatttt tataaacaca
    13441 cttaaatctt tacgcagtaa aggctctcct ccagtgatac gaattttttc gatcccttca
    13501 tcaatagcca ctttaacaaa caaaaaaagc tcttcaaagc tcagtaaatt ttctttaggt
    13561 tgatgattaa aaggaatttt tggcatacaa taaagacaac gaaaattaca tctttgggtt
    13621 actgatattc taagataatt aatctttctg ccaaactgat caataagcat tgcctctcct
    13681 agtgattatt tgataagttg tttaaatttt aaaacaagct caacatttcc agtgcctata
    13741 cgcaaatctt ttgcaatttg ctctatactt tttccctctt taaataaatc cacaattttt
    13801 tgctcttcgg tatcataatt tggtgttaat tttgtcatac tttgtgcttt ttgttccaaa
    13861 tttaaaatac gattttgttg ctcattttga aaatcttcta taatatgctc catggttttt
    13921 aaagttctta aaacgggggt aatttttgca ctgatttgtt tttcaagcgt gatttgaatt
    13981 tcttctttca atagagtaat tttatagtcc tcttcctctt gatcgccctc atcttttacg
    14041 cctaattctt tgcgtaaata atgaagttct tttgtaatat cttcaaccac gccttggagt
    14101 ttgtttattt ttgcactact ttctttatct ttgatattca tataagctaa tattgcaacc
    14161 aaaagtacga tcataaaaac taaataaagc acatcattac tcatttttgt cctttttatt
    14221 tcttatcata tctctttgca attgaaccac gaaagcatca aaagctattc tatcttcggg
    14281 ttttattttg ataatttgag ctaatttttt attttgagct ttagcaaaaa tggccatttt
    14341 ttgattatta agatcaaatc ttatgtaata ctcttttcct tcttctaaaa tctcatctaa
    14401 aaaatttaaa tattcaaaat ttaaagattc aaccacgcct ttttgtttga gtactaaaag
    14461 atctttattt ttatccaaag aatcctcaag tcttaaaata tcttctttta agctcaaaag
    14521 taaatcgaaa atgattttct cgccctcatc aaaatccaca cgcaaggcga gttttttcca
    14581 ttttgaaagt tgagaaatgg cacctaattt tagatattct tgtaaaaaat ggttattttc
    14641 aatatcacaa cactctaaag aagcttcaaa tcctgcctta aaaagactta tttccatact
    14701 aaatcaaccc aaataaaaat aaaaaatatt atacttaaat atccatttaa agtaaaaaac
    14761 gctttatcaa tgtgagcaaa atttttatgt acaattttat gttcaaaagc caaaataata
    14821 ccgctgataa tcactccaaa taatgcaata tttccaagcg ctactcccca aacctgccaa
    14881 acaaaaagta gccaaaataa tactgctaat acatggcaaa aagccgagat aaataaagtc
    14941 gccttagagc caaatttagc agggatagaa tgaagtccta cttttttatc atactccata
    15001 tcttgtaaag agtaaagcaa atcaaatcca gccgtccaaa aagttacccc taagcataaa
    15061 atcacactat aaatgtgaat ttcacccatg actatcacac tgcctgcaat aggtgcaagt
    15121 cctaaacaaa atcctaaaac taaatgcgct aaagaactaa agcgtttaaa agcagaataa
    15181 attgccaata caaaaagcac aggaaaagaa agataaaaag ccaaagtatt gataaaataa
    15241 gaacacaata taaaaataat cgcattaagg ataataaaaa tccaaacgct tttgcgtcct
    15301 atttttccac tgacattagg gcgatttgca cagcgaggat tgtctttatc gatatcttca
    15361 tccattaaac gattggtcgc catagcaaaa tttcttgcac ttacagcaca aataataccc
    15421 aaaatcaaag ccttaaaacc aaaccaagcg ctatcattaa cgagttttga agccactatc
    15481 atagatgaaa ataaaaaggg caaggcaaaa atagaatgct taaataccac aagttccaaa
    15541 atatctttaa atttattcca aattgtgttc atgtttttca ctttaaaata ttttttgcta
    15601 tgattttact aaaattttca taaattttag gataaattat cacatgtttt ttcaaatcgc
    15661 acttatagga accactgcca gtggaaagac ttatatagca aatgccttag ctaaagaatt
    15721 taatgcagtg gttttaagcc ttgatagtct ttgtgtttat aaagaaatca atatagccaa
    15781 tgccaagcca tctaaagatg agcttgcaaa tttaaactat tttggagtaa atttattaag
    15841 tgttgatgag cattttaatg tagaattatt tataagagaa taccaaaaag caaaagaatt
    15901 tgctcttata aatgatttgc ctttgattat agtaggtgga acgggttttt atctaaaaac
    15961 gatgatagat ggtttaagtc aaaaaattca agatacgact agcactttaa gtaatgatga
    16021 aatttatgct cttttattaa aaattgatcc ggcttataaa atagaaaaaa atgatactta
    16081 tcgtcttaaa aaatggctaa gtatttatga aagtacaaat gaaattccta gtgatttttt
    16141 aaaaaagaca caaaaagatg gggtgcttaa ggatattgaa atttatgagc ttgtatggga
    16201 tagagaaatt ctaagaaaac gcatagaagc aagaacaaaa gaaatgattg ataatgggct
    16261 tatagaagaa gcaagaatgc ttttttcaaa ttttgataac aatcttaaag cattaaattc
    16321 tatagggctt aaggaatgca aagagtattt agaaaatcaa atttctttaa aagagcttga
    16381 aagtttgatt agtatacata catcacagct tgccaagcgt caaagaactt ttaataaaaa
    16441 attccaaagc actcctttgg aattttctaa agccctagag ttacttagaa ataaattttt
    16501 agctaaagaa taaatgctca actaaaattt ttatccctaa gattatcaaa acagctcccc
    16561 ctaaaaattc agctttgttt ctaaagcgag tgccaaattt attgcctaat tctaaagcaa
    16621 tagcacataa gataaaagta atagagccta ttaaaaataa tgccaaaaac aaatcaacat
    16681 ctaaaaaggc aaagctaact cctatagcta aggcatcaac acttgtagct acagctaagg
    16741 caaacatgat tttaaatcca aattgatttg aattggtgtc gcaattttca ttctcaaaag
    16801 attctttaat catttttagc ccaattaaag aaagtaaaac aaaggctatc caatgatcaa
    16861 tacttgcaat aaaagatgca aaagtgatgc ctatagcata tccaatagct ggcattaaag
    16921 cttgaaaacc accaaaataa actcctgtaa taatatagtg ttttaaattc aattttttaa
    16981 cactaaatcc cttacataaa gatacagcaa aagcatccat tgctagtgca caggataaaa
    17041 gaataagact ataaaaatcc atgacaactc ctatgaaaga tgtaaaagtt gagaattata
    17101 ataaaaattt cttaattaat ttttttaatg aaattatgat taaaaattta tagcagtgga
    17161 ttatatttaa ttaaacttta agaataaaaa atatataatt caacttcgtt tttattttta
    17221 ctccttttaa aagtggccca ttcgtctagc ggttaggaca tcgccctttc acggcggtaa
    17281 cacgagttcg agtctcgtat gggtcaccac ttaaatcctt ttttaatatt tccgaaatca
    17341 atcatagatg ttctttagga tttttgctta atatttttat tgtttttcat aaaaatggat
    17401 ttataaactt ataagaattt tatttgtaga attttttgtt ttattagaat gatgaggatt
    17461 aataaacaaa tgagccatga taccaatttt ttcttgttat attttaaaga taaaattcca
    17521 aaggattctt taatttttct taaggaaagt ttagaaaaag caagcgaaga acaaaaagaa
    17581 aagcttttat ttaccaaact gaaaaatccc ctatatggac ttttatttgc ttttttgctt
    17641 cctggtttag atagaattta taatggcaat ataattttag gtatacttaa aatcatatca
    17701 gcaatacttg tttctatagg tttaataata gcagaagata aaaatgatga aagcactatg
    17761 ctgattttta taaatttatt tttcatacta agtgtttggg tgattttgga ttattttttg
    17821 gtatggaaag atatttgtca aaataatctt aaaaaaattt ttgaagtttt acaatgaagc
    17881 aagataaaac gatattgctc atatttaaag ataagattcc cgaagaaagg ctatttatct
    17941 tagaggaaga attaaaaaaa gccaaaaaga tctaagtgct ctttatgcta tctctcttaa
    18001 aaatcctttg gttggccttg tagtaagtat aactgtggga ttatttggga ttgatagatt
    18061 ttataagggc gatatcttgt tagcttgtat taaattagct ttttttataa tacctttatt
    18121 tgctactttt gctgctttta tagcattgtt agatgagagc cattcgattt ttatagatta
    18181 ttttgccatt tttgctttaa tgtttgttgt tgctagcatt tggaagcttg tagatattta
    18241 tcttgttttt gtaggtatta aaaaagataa ttttcataaa attcttaatt ttttctctta
    18301 aaaaatgtct tggaaattta aagaaataat taaagacttt cttagtcttt ttatataatt
    18361 tttatgctac aatattttgt caaactacta aattaaagga gaaattatgt ttgaattaag
    18421 aaaattacct tatgatacca atgcttttgg tgatttttta agtgctgaaa cttttagtta
    18481 tcatcatgga aaacaccaca atacttatgt aacaaatctt aataatctta tcaaagatac
    18541 tgaatttgca agtaaagatc ttgtaagcat tattaaaagt tcaagtggtg gagtatttaa
    18601 caatgctgct caagtttata atcatgattt ttattttgat tgcattaaac cgatcacagg
    18661 ctgtggctgt ggtggctcat gccaaagtat ggatgctaat ttacaagcag ctttagaaaa
    18721 agaatttggt tctttagaga atttcaaagc tgaatttatc aaaggtgcga caggggtttt
    18781 tggttcaggt tggttttggt tagtttataa tactaaaaat caaaaattag aatttgtggg
    18841 tacttcaaat gcagctacac ctatcactga agataaagtt cctttacttg ttgtggatgt
    18901 ttgggagcat gcttattatg tagatcatcg taatgcacgt cctgcgtatt tagaaaaatt
    18961 ctatgctcat attaactggg aatttgtagc aaaagcttat gaatgggctt taaaagaagg
    19021 tatgggatca gttagctttt acgcaaacga acttcatcct gtaaaataat acaaggcatc
    19081 ttaaaagatg cctttttact ctcctaaact tggagtcatt tcgataatct tccatggaag
    19141 tccttgagaa ttaagctcat ccataaaagg ttttgcgtca aattcttcca tattaaacac
    19201 accttttcct tgccaaattc ctttagcgat tagttttgta cctatcatcg caggaactcc
    19261 tgtagtgtag cttaccgctt gtgcgccggt ttctttataa cattcttcgt gattgcaaac
    19321 attataaata taaacttgtc tgtctttgcc atcttttata ccacggatta cacaacctat
    19381 attggtataa ccttttgtgc gaggacctaa acttgcagga tcaggaagta gggtttttaa
    19441 aaattctata ggaatgattt ctttaccttg atgcatcaca ggttttatac ctagcattcc
    19501 aacattttca aggcatttca tatgagttaa ataactttgt ccaaaagtca taaaaaagcg
    19561 aattctcttc aagcccttga tattttttac caagctttca agctcttcgt gataaagtaa
    19621 gtaactatcc tttacgccta cttcaggata atcccattcc atttttattt ccatcggttg
    19681 tgtttctatc cactcgcctt tttcccagta gcgtccctta gcagaaactt ctctaagatt
    19741 gatttcggga ttaaaattag tcgcaaaagc atagccatga tcgcctgcgt tacaatctaa
    19801 aatatctata taagaaattt catcaaataa attttgctgc gcataagcac aaaaaacatt
    19861 tgtaacgcca ggatcaaacc cacttcctaa aagtcctaaa attcctgctt ctttaaattt
    19921 atcatttctt gcccattgtt ctttatactc aaatttagct agatctggat gctcatagtt
    19981 tgctgtatca acataatcaa ttcctgcttt tatgcaagca tccatcaagc ttaaatcctg
    20041 ataaggcaaa gctacattaa gcaaaatttg cgcccctgtt tttttaataa gctctacaac
    20101 cgcatcgcta tcatctgcat caatttgtgc ggtttgaatt tctactccta gacgctcttt
    20161 gataaaacta gtaatttcat cgcatttgct tttggttcta cttgctagag tgattttact
    20221 aaaggtatct gaattcattg cgcattttac ggtagctacg cgacttaccc cgcctgcgcc
    20281 tatgattaaa agatttttca ttggtcgtgt ccttaaagaa attttaggaa ttttagctaa
    20341 aaattgataa tatcaaaatt tattttttct tttagcgtgt aatttgagct gagtaacata
    20401 aaaaaatcta tatttttata tcttactttg agtctataaa aagctcctaa aaattctttt
    20461 tgcaaaattg tagcttcaaa acgatttcct attttaagtt ctgcatagcc aaaagtataa
    20521 ttttttgaag caatccactg aaaaaattca tcttctaaat caagctcttc ttctatgata
    20581 tttaaatcag gtaaaattct agcactttta tgattaggct taaaataaag ctctttagga
    20641 tctgcatgag ctagaatttc tcctttatca agaaaggcga ttttatcaga catacaataa
    20701 gcatcctcga tatcgtgagt taccataatg gctgtaattt tttgtttttg tatgagtttt
    20761 tttagctctc ttcttaagtc ttgttttaaa ttctgatcta aattagaaaa aggttcatct
    20821 aaaagcaaaa gtttacagcc tcttgctact gctctagcaa aagccactct ttgcgcttgt
    20881 ccgcccgaaa tttcatcaat tttcttatat cttaaatttt caatttcaaa ggtttttaac
    20941 aaatcctcta aaatttgttt tttatctttt ttatcataga gtgcaaaaag tatatttttt
    21001 tcaacattta aatggggaaa taaagcatag ttttgaaaca tcatcgccac ttcgcccttg
    21061 cattttaaaa attcacaaga gctcgcttgt tctagttggg cgatgattct taaaagtgta
    21121 cttttaccac ttccgctccc tcctaaaatg cttaaaaatt ctccttcttt aacatgaaga
    21181 ttgatatttt ttaaagcttg tattttgcca aaattttttg ataggttttt aatttctaac
    21241 atcatctttc cttgtgattt tatccatcca aataacaact attaaagaaa gtaaaacaat
    21301 gagcagcgaa ggcaaagcag catcataaat tctctcatca cttgcaaacc aaaaagcttt
    21361 tacacttaga gtttcaaaac caaaaggagc taaaattcta ctcaaaggaa gctcttttat
    21421 ggtatcgata aaaacaatga taaaagccaa aaataaaaaa tgtttcatta aaggagtatg
    21481 aattttaaaa aataaaatca aataactcgg ccttaaattt aaacttgctt catcggtgtt
    21541 aagatggatt ttattataac ccccttctaa agaataaatt gcactcgcta gaaaacgaat
    21601 aatataagca aaaactaaaa taatcaatga agtgcctaat aaattaagat gaaaaatttt
    21661 atctaaaaac acgaaaagga caatcatgct aattcctaag gcagccgcag gtatagaata
    21721 acccaaagaa cttagcttaa gaatacatag gctgaaaaag ttatttttta tgattcttga
    21781 gctaaacatt aaaaaataag ccagtaaagt cgtaatcaaa gctgtgatga aagccaatat
    21841 aatggtttga aaactaatga tataaaattc tgcttcaaaa agtttaaaat cttttagccc
    21901 ccaataaaca agccatataa aaggcaagat aaatcctaat aaagcgatga taaaacaata
    21961 aaaacaggct aaaatttgct ttatatgact taatttcctt tttttgataa aaagagttaa
    22021 attttgatta aaactataat gatgcttgtt tttataataa taatctatat acatgattaa
    22081 aaaaacaaaa atcatcaaaa ttcctgataa aatactcgat gaataagaat catttaaatc
    22141 ataccagagt ttaaaaattc cagccgaaaa agtatctact cccaaataag cacttgcacc
    22201 ataatcactc aaagtttcca ttaaaaccaa taaagctcca gaaaaaatgg caggccttgc
    22261 gctcaaaagt gccacgcgtg taaaaattct aaattcagaa tatttcatga ttttagctac
    22321 ttcataagct tctatggctt cgcttttaaa agcagttttg gcaaataagt aaatataagg
    22381 atataaagaa attcctaaga caaaaataac tccatagtgg ttgaaaaaat ctatcctaaa
    22441 accaaaaact tcatgaaaaa agccctgaaa atccataatt ccaacatata caaaagctaa
    22501 aatataagca ggtattgcca agggtaaaat gagtaatttt tctaaaatcc tacaaaagta
    22561 aaaattataa tttgccatca aataagcact acttacacct aaaatcaagc ttagtaataa
    22621 cacccctata ctaactatca aagtatcttt gatgaatttt aaaaacaaat aatcaaaaaa
    22681 atgactcaaa ttttctttaa tggatgaaat ttcagccaaa ttgcttgtat tgaaattttg
    22741 aaaaagaata taaaaaagct cagcaaagat gccaaaaata ggtagagtaa gaaaaagggc
    22801 aagtaaaatt gcccctatct tgtaatactt tagggtttta agcattatct aaaaccgact
    22861 tgatcataaa ttttaacagc ctctttaacc ttttctgcta tttgactcac aggtatttga
    22921 tcttctttaa aagttccaaa atcttttacc gtttggctta attctacatc gtttcttata
    22981 ggaaattcat aattgctatc agtgagaatt ttttgaattt ctggagttag cataaattcc
    23041 ataaacttct tagctgcttc ttgatttttg cttgattttg tcatagcaat accgctgata
    23101 tttatatgag ttcctctatt gtcttgattt ggaaaaataa tacctaagga atttccaact
    23161 tctacatctt ttggattttt agaatttttt aaaagcccta tataataagt attcataaca
    23221 gcaaatttag cctcacctgc aaaaacttgt ctggcttgat ccctatctcc accctttggt
    23281 ttggttgcaa gattgtcaag cacaccctta gcccatactt tagcgttttc atctccatca
    23341 ttagctataa tagaagctaa aagagttttg ctataaggag ctgtagcact tctcataacg
    23401 atttgtcctt taaattcagg cttagccaaa tcttcatagt ttttcatttt gctaatgtca
    23461 gtgtttgcat ttttattgta agcaataatt cttgctcttt ttgtaatcgc aaaccattcc
    23521 ccatctttat ctcttaaatg agcgggtata gtatcttcta aatattttga tttaacaggg
    23581 cttaaaagtc cagaattttt tgcttctgta agattggata tatcggctgt tataaaaata
    23641 tcagcaggcg aattgcttcc ttcaagcgaa agtcttttga tgagttctga agctttagct
    23701 tgagtatgat taactttaat gcctgttttt tcctcaaatt tttttataat ctgaaaatca
    23761 gcatcataat gtcttgccga gtaaatgtta agttctgcag cacctagtaa agaaaaacct
    23821 aataaacata aagaaaagat ttttttcatt tatttgtcct tatattgaga attatattta
    23881 gttttatcat gatctttaaa atcagcatta gagtgttcag agcacgcaaa tgcaaaacct
    23941 aagcaaaata aaaataaaac taattttttc attatttctc cccccctttt ttttgtgatt
    24001 aaaattagac taatttttga taaaggatat taatattaaa aagtaaatat aaagtaactt
    24061 aatgattttt ctaatgataa gtattttcat tttattataa ttaattttga tactaattat
    24121 gaataattaa atttaatata aatatttaag agtattttta tatataaaat attaatattc
    24181 aatatcaaaa ataaaccact aagaaagtaa caataacaat gaaattttat actattttaa
    24241 acattctatt tataagcttt atgttgagcg cttgtgctgt tttacaaaaa tcacctccac
    24301 ttcaagaaaa caaagatttt tatatacttg atactcatac tcaaaaaaag atttcttttg
    24361 aagatatgat tgtagaatta ttaaaagcag atgtgatact gcttggcgaa aaacacgatg
    24421 aagcaaagca caagataagc caagttatga tttttaatgc cttagaagga aatttaagtt
    24481 ctcaaaatat aagctttgat gtagctttag aaatgttagc aagcacagag caaaatcact
    24541 tagataaagc ttttaaaaat aaaaaaacca ttaaaaccaa tgaacttact aatgcgttaa
    24601 attgggataa gggctggaaa tggaaagatt atgatcaatt tgtcaatgca gttttttatt
    24661 caaaagcaaa aatattaggc gcaaatcttt cacgctcaga aattacaagt atttataatg
    24721 gagttcagcc tttaaagggc tatgtttcaa ccacaaatga agtaaaaaaa caaatttttg
    24781 acattatatc cttaagtcat aaattaaatc ctcaagaaaa taaagaatta ctagataaat
    24841 tagtagaaat tcaacaattt aaagacaggc gaatggctga tgtattggtt catcatacaa
    24901 acaaggtttt attgttagct gggagctatc atacaagcaa gaaaatagga attcctttac
    24961 atatacaaga ttttaaaagt gataaaaaaa tagtcgtggt gaatttaaac tatggagaaa
    25021 gagatttaaa agacagtgat tatactttta tttattatta aaggagaata atgaaaaaat
    25081 taagtttatt ttgtgttatg ggtttatgtt ttgctaattt tgctttttcc gaagaattag
    25141 aatttgatag tcttgaaatt tcaggctcaa aaatcaaaaa cgatgaaaaa ccctttgtaa
    25201 ctcccggagc aacaagcaca agagataatt taaattcaaa cactcaaagt atagattcta
    25261 tagtgcgtag tgttcctggt gcttatactc aagtagatca agcacaaggg ggagtttcag
    25321 taaatattcg cggtatgaca ggacttggaa gagtaaatac acaaattgat ggtgtaactc
    25381 aaactttttt tggttctgca agtgatgata gctttcatgg gcaaattgga acttcaagtt
    25441 ttacagcccc aatagataaa aattttttag tcgccttaga tgttaatcgt ggaactttta
    25501 gcggggcaaa tggagctaat gctttaatgg gttcggctaa ttttagaact ataggcgtag
    25561 atgatatagt acaagaagga agagtttttg gttttttggg aaaatactct tatggtagca
    25621 atgctatagg acctaatttt atgggtgcta tagcaggaaa aactatgtta gaaaataatg
    25681 ctaatttagg cattttattt gcttatagtg ggcaaaatgt ttctcaaaat tataaaattg
    25741 gaggtggagg ct
//
LOCUS       DARAII010000011        24916 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.011, whole genome shotgun sequence.
ACCESSION   DARAII010000011 DARAII010000000
VERSION     DARAII010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24916
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.011"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            56..994
                     /gene="trbB"
                     /locus_tag="SB143_000394"
     CDS             56..994
                     /gene="trbB"
                     /locus_tag="SB143_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer ATPase TrbB"
                     /protein_id="HEF9748962.1"
                     /translation="MSNLEFQARINEKIKREFGDILVHLEDQETIELMLNSDGKLWLE
                     KLGQDMICLGDFSEAKAKSIITAVSTLLDTTTNADNPILECELPLDGSRFEALLPPIV
                     AKPTFTIRKKAVKIFTLDDYVESKILTPKQKEVLINAITERQNILVVGGTGSGKTTFS
                     NAIIDGISKITPEHRIVIIEDTAELQCASKNKVILRATDKVDMLRLLKATMRLRPDRI
                     IVGETRGKEALDLLKAWNTGHPGGIATIHANSANGGLTRMEQLISEATTAKMSKLIAE
                     AVNLIVFISKTKEGRKIKEIIKVIDFENNKYITQTI"
     gene            1004..1300
                     /locus_tag="SB143_000395"
     CDS             1004..1300
                     /locus_tag="SB143_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HEF9748963.1"
                     /translation="MQRFLFLFLVLGLGYALASTTGAGLPWEDPLETIKASLSGPVAG
                     VVSILAIIGAGAGLIWGGELNGFIKTLIYIVLVIAIVVGAGNFMGIFNTSGALI"
     gene            1300..1587
                     /locus_tag="SB143_000396"
     CDS             1300..1587
                     /locus_tag="SB143_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbD"
                     /protein_id="HEF9748964.1"
                     /translation="MEELQKIDIYSALNKPNLIFGADRELMLITGLISFALIFTGATL
                     ITSVIGIALFFVCGLLLRLMAKSDPLMRQIFIRQNKYKKFYYPQSTPFSKD"
     gene            1589..4054
                     /locus_tag="SB143_000397"
     CDS             1589..4054
                     /locus_tag="SB143_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbE"
                     /protein_id="HEF9748965.1"
                     /translation="MLALKEFRNKAKAFPDILNYASFIDEGILLNKDGSLTAGFYYRA
                     GDISSMTINERNTLSARINSVLKTLGNGWAVHIDCSRIKTENYIDGDTFYQSNIAQIL
                     ENERKHYFDNVEHFENLFTMIFTYLPPHKNISKITDLMIIDETKNKNQSNKILEYFKN
                     ILQKLEDSLSNYIKIERMLPRTAIDEYNNEYILDDMLEYINFCICGERQKIILPNAPM
                     FLDCLLGGRHFETGMYPRIDNQHIGIIAIEGFPSESYPNILNALTELNFDYRFNTRFI
                     FLDDFDAQNSLNKYRKKWQQKTKGWVDQLLDRPARRLDNHAVLMVQELDSALAESKTG
                     LLGYGYYTANIVVFDRDNESLEHKLKDIRKVLENLGFLSRTETINSVEAYLGTLPGFV
                     YPNLRRPVLNTLNLTHLIPLASIWAGEKYNPSDKFPPNSPPLMQVVTSGNTPFRLNLH
                     VSDLGHTLIFGPTGSGKSTLLANIFLSFQKYKNAKIYAFDKGQSLLAPTLATGGIHYN
                     IAGDHSSLAFAPLANIKTEAEIAWAEFWIETCLKLQNVNVTPKHKKLIHEALISHINT
                     KSTSLTEFVSALQDNDLRDALSYYTISGTGGFLFDSEEDKLSLSNITTFEIEELMSLG
                     DQYIVPALLYIFNRIERGLDGSPTLLIIDEAWIALKHSAFKDKIVNWLKVLRKANVAV
                     VMATQSLSDSAKSGILDVLQESCPTKIFLPNSDAFKKGTETTLAPYDFYKIFGLNDVQ
                     IGIIANAIPKREYYYTSPLGTRLFNLALGKTNLAFTGISDKIGVKRVNQLYEKHKEEW
                     AYKWLEEKEINYKRFNNSQKEQI"
     gene            4051..4731
                     /locus_tag="SB143_000398"
     CDS             4051..4731
                     /locus_tag="SB143_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbM"
                     /protein_id="HEF9748966.1"
                     /translation="MKHFIFGVKKITLALGATLLISNNAFADDVLTGDTRLACEAILC
                     LSSGTRPGECSSSLARYFSIKFKKPWETVNARRAFLNLCPVQNDANIEDLVLNNLVDD
                     VLPASDPRQCTPEYLNTQVEQSNNTYLDELLGNRSYRIKTTMPNFCYSLINHEYTDYK
                     TPKYKCSGEFYSALEWRLSARLELVNWQEYQSLNDSQRYAISRSCGDNTCYTYFKKTP
                     FSKICWTY"
     gene            4745..5548
                     /gene="trbJ"
                     /locus_tag="SB143_000399"
     CDS             4745..5548
                     /gene="trbJ"
                     /locus_tag="SB143_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbJ"
                     /protein_id="HEF9748967.1"
                     /translation="MKNFIFGVNQKSKKLSLALISSLIIGNNAFAGGIPVIDFSAIAN
                     QVKDYAMQLQQYEQMYSQLQQQLLMVQMQKQNLERLSKEDWQSLGTVLYQVRGVMNRV
                     NGISYDIGNVSRKFENTYKNFAGYSDDLTNATNESERNKIYSDRYKQIAETNQNTFNG
                     TLQQLELQYQDLESEDTLIAKLKQNSQNSNGNLQAIQATNDLITYQIDEIRKLRSVIM
                     DQSNMLTNYLASQNNQRIMQQAKIDKFLENAEKSGSSWGKSNPDALKWK"
     gene            5597..5866
                     /locus_tag="SB143_000400"
     CDS             5597..5866
                     /locus_tag="SB143_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEF9748968.1"
                     /translation="MKHFIFGGLLSLGALAFLAGCGDEAKTSDYYKTHIDEAKARVAE
                     CKKMEKMNETQQRDCSNAKWAIETNGLENAGSSWGKSNPDALKWK"
     gene            5802..7037
                     /gene="trbL"
                     /locus_tag="SB143_000401"
     CDS             5802..7037
                     /gene="trbL"
                     /locus_tag="SB143_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbL"
                     /protein_id="HEF9748969.1"
                     /translation="MGLRMRVVLGVNQTQTLLSGNKLAIIFLIFLVPNLAFGAENADG
                     ILSLIRNGILSWTPLIKTACLWVFWTLVVIDLVWTFGLKALSGFEFGDFIATLIKKIM
                     YIGIFLFLFNIDQWLQIIFNSFSQLATSVNNGISITPQNIIEQALNLVGKIIQSMDFW
                     SPGDSILKVVAGVIILIAFVLMAIDLLIVYLKFFLMNVIVFFALALGGLSHFKQIGLN
                     PIMTAIKVGVELFMIQGLMALSITMIDVINNEITQKSTADVILQILVVALIFCMITKM
                     VPGIIEAVFNGSIGESAGASAGFRAVATMAAGAAAGAAVGAVGATRAMNAAKALHLAE
                     GGAGGMDLVKGVAKNLAGAGGEHLRDNLTRGRMPQQMANRLQEKLRDIQGKASEGGIS
                     AGTPKQENYQSGINPDVME"
     gene            7057..7752
                     /locus_tag="SB143_000402"
     CDS             7057..7752
                     /locus_tag="SB143_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbF"
                     /protein_id="HEF9748970.1"
                     /translation="MNIFRQKQKIEKSEIDTSNNPYLNAKTEWLERYGDYITRAKNWQ
                     IVAMASLGICFICVLFLGYIGSQNKLIPYVIEVDKLGNTAKVGMVQNIDLKNPNVIKY
                     SLNTFIYSWRSVWGNAETQRKFIFDAYAYIEPRSKAFNYLNSEFQKNNPFARATKENV
                     RVKIKSIVPQNIDTWQVEWEETTTNLNEDILSKETYRGLIQIKQIIPNTEEQILKNPL
                     GIFITDLNFAKIL"
     gene            7765..8694
                     /gene="trbG"
                     /locus_tag="SB143_000403"
     CDS             7765..8694
                     /gene="trbG"
                     /locus_tag="SB143_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbG"
                     /protein_id="HEF9748971.1"
                     /translation="MKKIILLGSLIASSLIANNLNERDFANLTPKEKKDLAIAQKWIN
                     SKTTTIQGNNGEVIFLFGESMPSIVTAPLRLTDIALEPGEVIKDVQIGDSIRWAVSLS
                     ISGEEPYLISHIIVKPTDKNLQTTMNIMTNKRVYRLNLISEAKKFMPAVSFNYPNSII
                     KTLEDYKNQMKAKSEAKNFYKTKDDEIPSNIENLDFGYSIEGNAPFKPLRIYNDGIKT
                     YIQMPKNLKFYEAPALMVLDSSNEKQIVNYRLKYDTFIVDRLFNKAILLSNVGSKQEK
                     ITITKHSNKANQDIVNNVLYDLSLQNKNKKENK"
     gene            8691..9128
                     /locus_tag="SB143_000404"
     CDS             8691..9128
                     /locus_tag="SB143_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748972.1"
                     /translation="MRILFLALIAFFITSCAKMNSDYFNSSFAVEETKINYNKIADDF
                     SQFIIPHYPPNKTTFFINEDKSNQDFSNYFMNALRKKGYAISNDNSKKDLTFLSYQIS
                     QIDNENIVAIFNINESKINVIYKIIDNKLVKNNTTSFNFTPQN"
     gene            9139..10371
                     /locus_tag="SB143_000405"
     CDS             9139..10371
                     /locus_tag="SB143_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbI"
                     /protein_id="HEF9748973.1"
                     /translation="MLEINTSPNKFLPKNNKRLSKVPIIILFSIAVIVLFSIFYVAVS
                     RKQNLEKQATQTTPKEQIQTTTNPNNTNLDTYINDLMQNQKLQANNTNPLPIPNPTQP
                     PIQEIKPQPIQTNNPPVLIQDNAMDEREMKVKKDMQLKALLSDTKLNIKTETNNKNQT
                     INFNPPSNSNEDINAINVVNPSPSIGLEGNTNKDAQGQQFLSQKNDNGYLKYTKQKPL
                     SPYEIKAGWNIPAILITGVNSDLPGQILAQVTQNVYDTSTGKYLLIPQGTKVVGAYSS
                     NVIYGQSRLLVAWNKLIFPNGDTLNLDSMQGASQDGYTGFEDEVDNHYFRIFGSAFLL
                     SSISAGIALSDNSDTNSEKETASDKAIAQAIQQMGQVASEMIRKNMNISPTLKIRPGY
                     KFNIFVTKDIILEPLELR"
     gene            10542..11096
                     /locus_tag="SB143_000406"
     CDS             10542..11096
                     /locus_tag="SB143_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEF9748974.1"
                     /translation="MIDIALIEQCKNSNVETQIIQKIIQIESNNQQFAININKVGSFM
                     LKTKKEAENLANNFIKGGYSVDIGLMQFNSNNLKSSTFSHYSVEDLLDTCKNIKAGSD
                     IFYLAYEATDEKLSKEERINQALSIYNTGNLEDGFNNGYVAKYNYISPNINLLEKARK
                     SETRIEIKFQPFNLQTQKRIQNDK"
     gene            11086..11448
                     /gene="ssb"
                     /locus_tag="SB143_000407"
     CDS             11086..11448
                     /gene="ssb"
                     /locus_tag="SB143_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEF9748975.1"
                     /translation="MINNIIIGGRLTEDAEIKRTNQGVAICNFTLANNRKYKETEFST
                     YIEVSLFGAFAEVMQPHLKKGIAIDVIGELMQDVWDHEGKTYYKHKIKAKEIDFRTPK
                     KEKQAIQNIEEGENYEGF"
     gene            11435..11575
                     /locus_tag="SB143_000408"
     CDS             11435..11575
                     /locus_tag="SB143_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748976.1"
                     /translation="MKDFKELETIPNFSYEVDPLTAEELGAFEENALSKEDAKEGIED
                     QG"
     gene            11580..13790
                     /locus_tag="SB143_000409"
     CDS             11580..13790
                     /locus_tag="SB143_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HEF9748977.1"
                     /translation="MKNKDFIQETADKIIESLKNGTAPWIKPWKGIDLANNMPYNPIT
                     NKPYNGINSINLMLQNYNDPRWLTYKQAQSINAQVRKGEKSTLIQYWQFSEMVDKLDE
                     EGNVITNEKGEVEKIEVKLENPKVFFAYVFNAEQIENMPKLEQKHEIDNFQTIKEAQK
                     ILEDSKAIIHHQGNRAFYNSTNDTITLPPKENFLSEGAYYATALHELGHWSGHSSRLN
                     RDLNNPFGSKEYAKEELRAEIASFLFNGKIGLDYDPGQHLSYIDSWVQILEDKPHEIF
                     KATSDATKIVNFIENLSLEQKQKIELENSNTQKQELTQDKELNLATRKTYLYVPFAEK
                     EFAKKAGAKWDKEAKMWYAPKGADLKNFNQWLNQEQTQIYNNAYDEFKAFLEKHELNI
                     EGQPIMDGKLHRVSVIGDKGREKSGAYVGFLNGHPAGFVQNYKTGIKENWKSANSFEN
                     TKNQEIDFKNAMEHNKAMKEAREKELIQAYEKTALKLEDEYNNARWANSEHPYLKEKG
                     FDKNFYLKQDKNGNLLIPLRDIDGKYWATQRIFANGDKMIGATRTVEEKEQGIEYPAK
                     KQGNFFLLGAKNLDNVNEVYICEGFATSASVYEATKSPTIMGVDAGNLEIIVTSIKEK
                     YPKMNIIIAGDNDVKKELNGNKNVGKTTALGIKEKYPEVKVVLPNFTNEEAQKGLSDF
                     NDLMKSRGLEEIKKQLKEQIAKQLIVEKATTKALDKNKGINKEISTKKDIGISL"
     gene            13787..15610
                     /locus_tag="SB143_000410"
     CDS             13787..15610
                     /locus_tag="SB143_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEF9748978.1"
                     /translation="MKKQTNQALVYTLGLIGIFLTFTIISQIATQYLAKSFNYSPSLG
                     ETLLYGFYNPFKWISWSYAYYSFYPDFFKKFFMAMFAGVAFCFIVFILVKLAFLRKAK
                     AIENLHGSAHWATLEEVKESGVFDKDKGVYIGGFEHKKTLHYLRHDGPEHVMLFAPTR
                     SGKGVSLLLPTLLSWGESALIFDIKGELWALTAGWRQKYAKNKVLKLDPTCLDDSAVK
                     FNILEEIRLETMHEVKDTQNIAINLIFKGETPPTNPTQGSTSYFKSEAGNFLVSIILY
                     ALHLKKYRGENTPNLTDIYKFINDPNQSIDELLEEMVECDISTMDKNTQEIIQSISRS
                     MKNKATQELSGVVGTASEALNLYIDPILAKNTAKSDFKIKDLMNYESPISLYLIIPPG
                     QKDRLRPFFNLLINQIFRTLTDDSLNFKNGENIKRYKHKMLVLADELTMFGKLGVLEE
                     NLAYMAGYGMKFYGSIQDIQQLYSIYGEKETIISNCHIRIAFAPNKIETAKLLSEMGG
                     ITTIIKKSLTSSGKRTAVMLGNVSETIQEVQRPLITADECMRLPSAKKDKDDKIIAPG
                     DMLIFIAGQAPIYGKQILYFKDPAFLARSKVTLDKQVSDIL"
     gene            15621..16340
                     /locus_tag="SB143_000411"
     CDS             15621..16340
                     /locus_tag="SB143_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraL"
                     /protein_id="HEF9748979.1"
                     /translation="MAKIHFVLNGKGGIGKSFISSLLCQYFLDKGESIVAIDTDPNNT
                     TLLNVKALKAKFLQLIDDDGKFDVRAFDKIVELAFEKKAKNYIIDSGATTFIPLIDYL
                     KENEVLDFLTSNSLEVYMHVPIVGGQARDDTILGLTQLTQAFNCSFVVWVNEYHASII
                     KDNLEFEETKEYQAIKEKIKAIIYLNALSKDTFGKDLLELTSKNLTFDEAMQDKSFSL
                     MSKQRLKIFKDKAFIQIGNIL"
     gene            16443..16682
                     /locus_tag="SB143_000412"
     CDS             16443..16682
                     /locus_tag="SB143_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748980.1"
                     /translation="MQKQYPEVYSLEESLAILKKYKDDLTKEQYEAIRSNIGNFAIED
                     MFLNEKDIIDNVKIIKGEATANECIVALKKEWGVS"
     gene            16682..17344
                     /locus_tag="SB143_000413"
     CDS             16682..17344
                     /locus_tag="SB143_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEF9748981.1"
                     /translation="MWDSQENLSEFDKFLIKTNKIGAKSLDELFRKERMITNKKALEL
                     GKNPIKGNFDYQHLKDIHKALFEDVYTWAGQDRMQMGLKEKFAKYAPNGAIINFVPGK
                     ELDKYSKIIFDELAKNNYLKNSKDLNHFAKNLAKFMGEINALHPFREGNGRTQRIFLN
                     ELAKNAGYKLDLNLISKHKMIHACVEASQLKPGRLEALIKDNLKNFRQNLDLEQNKGM
                     SL"
     gene            17349..17816
                     /gene="lepB"
                     /locus_tag="SB143_000414"
     CDS             17349..17816
                     /gene="lepB"
                     /locus_tag="SB143_000414"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEF9748982.1"
                     /translation="MRKAIAIFAFSFAFLLILSYLIFYFGGFHFNYTRSMPLGLYKEI
                     NSSTLNKNDIVLLKIPQKKEILLKKIVAVSGDFVEVNKQGVFINKILMPDSKIFSFDS
                     KGNPLEFKPFKHTLKENELFVMGENIKSYDSRYFGVINILQNEVKKVKIVILF"
     gene            17869..18264
                     /locus_tag="SB143_000415"
     CDS             17869..18264
                     /locus_tag="SB143_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraM"
                     /protein_id="HEF9748983.1"
                     /translation="MNKKELIEEIAKKHHIILDENDPILAVVSANEIIFDDFLEKIDL
                     LFTKHKTDLESYKFNIFNEIREYSKSNQEILKDILTQAQTNQNTTKPPQEKTEDTKEK
                     KNTNINFLIIAIASQIIFLLVGLIIGITI"
     gene            18356..19042
                     /locus_tag="SB143_000416"
     CDS             18356..19042
                     /locus_tag="SB143_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9748984.1"
                     /translation="MIISVVNEKGGSGKTTLAVNLSARLAEDGDNVLLIDADPQKSTE
                     VFSDMRSQSNLEPLFSNVSKTGVSLGDEIKRMKNAFDSIIVDTGGRDSKEMRKAILSS
                     NIIIIPTIPSQYDVNVLDHMLEIYNEVIEINPNLLALVLVNRVSPNPFLAKELENLKE
                     YINEAKKEKGLDKVIMLESVIYERQAYRKAVIEGKSMKEFCDKNDKALNDFENFYQEL
                     LKIANEKLGV"
     gene            19045..19284
                     /locus_tag="SB143_000417"
     CDS             19045..19284
                     /locus_tag="SB143_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748985.1"
                     /translation="MGFKKLSSEAPKKENDFVNSARGETGNTKTGNTKTGNTKRNKKL
                     MINFTEEEYQILNQESNSMGLSLNSYVRFKIFRKD"
     gene            complement(19323..21479)
                     /locus_tag="SB143_000418"
     CDS             complement(19323..21479)
                     /locus_tag="SB143_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEF9748986.1"
                     /translation="MIIKKIPSKKQNKSSFKNLSNYILDKDNNNAKVLVDYMLDKNNE
                     MDKVEGYHFTNCSFDNDEDNINEIINTQKLNTTTKQDKTLHLVVSFQEDENPTLEILQ
                     AIEEEIAKSLGMEDHQRLSVVHSNTNNLHIHIAINKVNPHTLKVINPYNDVRILQETA
                     MKLEKKYNLKLDNHISQKDKQSNKYNIHTMNCNFETWVKEKLSKQVDLMLKDEKTTFK
                     DVKQFLAEYDLEFRERRKGFVIASKSEKLFCKASSIHRGLSKQALEKRFKELDLKQEK
                     ENTQNIKEEKHEIKEQYQRPNKETSKTLWEKYLRIENEKKAELDKELRILKLRRNEFK
                     TSIPSMKFNKNTFAHVKNQRMIFKNKQKELYQKYKRVSYRDFLISESLSGNEEATRAL
                     RRTKTKINENENTLSSTQEKPKIFENVDYITKEGYAVYKSGFNKAIDKGEMLKVSLIN
                     DKDDKEFLLNSLLMAIDRFGNHLNITGDDKFKRNILEVANDYNLNVSFSDQRMQKIQE
                     ENNNKRQEMKTRKVLKNIIELKIKLTEQDKDIDENIKEKELKALKFSLKKISNSTPSI
                     FKGELKKLGFSYKEIDSMDTESVCIEIDGFIVNSANKEGLIAMNEEIKQTLIDDEEIK
                     RFEKFEYLFLNTDKVADVTKGFYANRKIDVDGYIEKFSMQESKISKVANAISMLSDKN
                     IEIMEKYVKKLEKDLKYQYLKKAEVIESNDINLNNF"
     gene            complement(21442..21825)
                     /locus_tag="SB143_000419"
     CDS             complement(21442..21825)
                     /locus_tag="SB143_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA transfer protein"
                     /protein_id="HEF9748987.1"
                     /translation="MNKNKRIAIRLSQNEYEYIMQKAKGHGLTISRYLRDLAMNYPIT
                     CIVDQKVAHDVLNIAGDIGRLGGLFKHWLVRNEDNKVNFSNKRTYNDIDEIVDQILDL
                     QILLKEQAKRIIQNDNQKDSKQKAE"
     gene            22028..22351
                     /locus_tag="SB143_000420"
     CDS             22028..22351
                     /locus_tag="SB143_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748988.1"
                     /translation="MKRGFAKIEFFANLEYLKQEYNKGYVVSKILYEKAKQDKNISMV
                     YSQFNKYFNEVFKNKIEKKEIIQENNQSLALENKEPIKLKINTKSKKVFDAKFGKDIK
                     EDDLL"
     gene            23240..24154
                     /locus_tag="SB143_000421"
     CDS             23240..24154
                     /locus_tag="SB143_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9748989.1"
                     /translation="MNNEIEIKDLNEINKNNKQQVVYRKDNLSTDCITGEVIERNQII
                     VRKVQTRESFIKLFTENIHYIINLEPQEKTLFFTLLSSVDYKNVVRFDKSMKQNIILD
                     KVLSRAGMYRALNGLIEKKVIFKIDRDFVKSYAGVGSDDCYLFNPNLVGRGSWNDLKN
                     LRHTITREWDFENLEVRENLEIEEEYLGLDEIKNNQKQYQVKEINQEHDETTKVKNTE
                     IVIEEKNNSANNQYSFDKKEEPSINKKVLISNDTQPSLFNENQKEQEARLFIEKFGGM
                     FSGAYHPTKSAKELKREKLDQDLKEGKI"
     gene            24151..24564
                     /locus_tag="SB143_000422"
     CDS             24151..24564
                     /locus_tag="SB143_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HEF9748990.1"
                     /translation="MKKVFLDTNIFIDFFEETRENNQQAKQLIYFLISNDIKIIFSED
                     MISTVAYILKKENLGKFTHFIKTISLEKEFEIVSFGASVINMACDYYDKYQGDFEDYL
                     QYFCAEKEGCCAIYTMDKNFPNLKIPVKRYGEIDI"
BASE COUNT         9583 a         3381 c         3913 g         8039 t
ORIGIN      
        1 aaaaaaaatc ctgacaaatt tttaactctt gcaattgaat caaaaggact cttcaatgag
       61 taatcttgag tttcaagcaa ggattaacga aaaaataaaa agagaatttg gcgatatttt
      121 agttcatttg gaagatcaag aaacaataga acttatgcta aattcagacg gcaaactttg
      181 gcttgagaag ctaggtcaag atatgatatg tctaggcgat ttttcagaag ctaaagcaaa
      241 atctatcatt accgcagttt ctacccttct tgatacaacc acaaatgcag acaatcctat
      301 tttagaatgc gaattgccac ttgatggatc aaggtttgaa gctttattgc ctccaattgt
      361 agcaaaaccg accttcacaa ttagaaaaaa agctgtaaaa atctttactc ttgatgatta
      421 tgtagaatct aagatcctca caccaaaaca aaaagaagtt ttaatcaatg ctattacaga
      481 acgccaaaat attttagttg ttggtggaac tggtagcggt aaaaccactt tttcaaacgc
      541 aattatcgac ggcatttcta aaatcacacc cgagcataga atagtaataa ttgaagatac
      601 agcagagctt caatgtgcga gtaaaaataa agtgatttta agagcaacgg ataaagtaga
      661 tatgcttaga cttttaaaag ccacaatgcg acttcgtccc gatagaatta tagtgggcga
      721 aacaagaggc aaagaagctt tagacttatt aaaagcttgg aatacaggac accctggcgg
      781 aatagccaca atacacgcta attctgcaaa tggcggactt acgagaatgg agcaattaat
      841 ttctgaagca acaactgcaa aaatgagtaa attaattgct gaagctgtaa atttaattgt
      901 ttttatctca aaaactaagg agggaagaaa aataaaagaa atcataaaag taattgattt
      961 tgaaaataat aaatacatta cacaaacaat ttaaggagtt taaatgcaaa gatttttatt
     1021 tttatttttg gtgctaggct taggatatgc tttagcctca acgactggag caggtttgcc
     1081 ctgggaagat ccactagaaa caatcaaagc gagtttaagt ggtcccgtgg ctggtgttgt
     1141 ttctatttta gccataattg gagctggagc tggtttaatt tggggcggag aattaaacgg
     1201 ttttatcaaa actcttattt atatagtgct cgttattgcc atagttgttg gtgcaggtaa
     1261 ttttatggga atttttaata ctagcggagc gttaatttaa tggaagaatt acaaaaaata
     1321 gatatttata gtgccttaaa taagcccaat ttaatatttg gtgcagatag agaattaatg
     1381 ctgataactg gattaatttc atttgcactt atttttacag gtgcaacgct tattacaagc
     1441 gttataggta ttgcattatt ttttgtttgc ggtttgcttt taagattaat ggcaaaaagc
     1501 gatccgctaa tgcgtcaaat ttttatacgc caaaataaat ataaaaagtt ttattatcca
     1561 caaagcacac cattttcaaa ggattaaaat gttagcactt aaagagttta gaaataaagc
     1621 aaaagcattt cccgatattt taaattatgc aagttttatc gatgaaggta ttttgcttaa
     1681 taaagacggg agtttaacgg ctggttttta ttatcgggct ggagatatta gctccatgac
     1741 aataaatgaa agaaatactt taagtgctag gattaatagc gttttaaaaa ctctaggcaa
     1801 tggctgggcg gtgcatattg attgctccag gataaaaaca gaaaattaca ttgacggcga
     1861 tactttttat caaagtaata tcgcacaaat tcttgaaaat gaaagaaaac attattttga
     1921 caatgtagaa cattttgaaa atctttttac aatgattttc acttatttac caccacacaa
     1981 aaatataagc aaaattaccg atttgatgat aattgatgaa acaaaaaata aaaatcaaag
     2041 caataaaata ttagagtatt ttaaaaacat tcttcaaaaa ttagaagata gcttaagcaa
     2101 ttatataaaa attgaaagaa tgctaccaag aacagctatt gacgaatata ataatgaata
     2161 tattttagat gatatgcttg aatatattaa tttttgtatt tgtggcgaaa gacaaaaaat
     2221 aatattgcca aatgctccta tgtttcttga ttgtttatta ggtggaagac attttgaaac
     2281 gggaatgtat ccacgaattg ataatcaaca cataggaatt attgcgattg aaggctttcc
     2341 aagtgaaagt tatccaaata ttttaaatgc actcacagag cttaattttg attatagatt
     2401 taatactaga tttatctttt tagatgattt tgacgcccaa aattcactta ataaatatcg
     2461 taaaaaatgg caacaaaaaa caaaaggttg ggtagatcaa ttactagatc gtcccgcaag
     2521 aagattagat aatcatgccg tgctaatggt gcaagagcta gattcagcat tagcagaatc
     2581 aaaaaccggc ttattagggt atggctatta caccgcaaat attgtagtgt ttgatagaga
     2641 taatgaaagt ttagaacaca aattaaaaga tataagaaaa gttttagaaa atttaggttt
     2701 tttatcacgc accgaaacaa ttaattcagt agaagcttat ttaggaactt tacctggatt
     2761 tgtttatccg aatttacgcc gtcctgtgtt aaatacactc aatttaactc atttaattcc
     2821 tttggcgtct atttgggcgg gagaaaaata caatcctagt gataaatttc ctccaaattc
     2881 tccgccatta atgcaagttg ttacatctgg taatacacct tttagattaa atctgcatgt
     2941 tagtgatttg ggacatactt taatttttgg tccgacagga tcgggaaaat ctaccttatt
     3001 agcaaatata tttctctctt ttcaaaaata taaaaatgct aaaatttacg catttgataa
     3061 aggacaaagc ttattagctc ctacacttgc aacgggtgga attcattata atatcgcagg
     3121 ggatcattca tctttagcat ttgctccttt agcaaatatc aaaacagaag ccgagattgc
     3181 atgggctgaa ttttggattg aaacttgctt aaagttacaa aatgtaaatg ttacaccaaa
     3241 acataaaaaa ttaatacatg aagctttaat ttctcacatt aatacaaaat ctacttcttt
     3301 aaccgaattt gtatctgcat tacaagataa cgatttaaga gacgctttga gttattacac
     3361 aatctcggga acaggtggct ttttatttga ttctgaagaa gataaattaa gtcttagtaa
     3421 tattacaact tttgaaatag aagaattaat gagtttagga gatcaatata tagtccccgc
     3481 cttactttat atttttaatc gcatagaaag aggattagac ggaagcccta cattattaat
     3541 tatcgatgaa gcttggattg ctttaaaaca ttctgcattt aaagacaaaa tagttaattg
     3601 gcttaaagtt ttaagaaagg caaatgtagc cgttgtaatg gctacacaaa gcttaagcga
     3661 tagtgcaaaa agtggaattt tagatgtttt acaagaatct tgccctacta aaatattttt
     3721 accaaactct gacgcattca aaaaaggaac tgaaacgaca ttagctcctt atgattttta
     3781 taaaatattt ggacttaatg atgtgcaaat aggaattatt gctaatgcta ttcctaaaag
     3841 ggaatattat tatacctctc cacttggaac tagacttttc aatttagcac ttggaaagac
     3901 aaatttagct tttactggta ttagcgacaa aataggagtt aaaagagtaa atcagcttta
     3961 cgaaaaacat aaagaagaat gggcttataa atggctagaa gaaaaagaaa ttaattataa
     4021 aagatttaat aactcacaaa aggaacaaat atgaaacatt ttatttttgg cgtaaaaaag
     4081 attacattag ctttaggtgc aactttatta attagcaata atgcttttgc tgatgatgtt
     4141 ttaacaggcg atactcgatt ggcgtgtgaa gctattttat gtttaagtag tggcacacgc
     4201 ccaggcgaat gctcttcttc attggcaagg tatttttcta ttaaatttaa aaaaccttgg
     4261 gaaacggtta atgcaagaag ggctttttta aatttatgcc ccgtgcaaaa tgacgcaaat
     4321 atagaagatt tagttttaaa taatttagtt gatgatgtat tgcctgcgag cgatcctaga
     4381 caatgcaccc ctgaatattt aaatacgcaa gtagagcaaa gcaacaatac ttatcttgat
     4441 gaattactag gcaatagaag ttacagaata aaaacaacta tgcctaattt ttgttatagc
     4501 ttaatcaatc acgaatatac agactataaa acaccaaaat ataaatgctc gggagaattt
     4561 tatagtgctt tagaatggag attaagtgct agattggaat tagtaaattg gcaagaatat
     4621 caaagtttaa atgatagtca aagatatgca atatctcgaa gttgtggtga taatacctgc
     4681 tacacatatt ttaaaaaaac accattttct aaaatatgct ggacttatta aaaaaggagt
     4741 aaatatgaaa aattttattt ttggcgttaa tcaaaaaagt aaaaagctat cattagcttt
     4801 aatatcatca ttaatcatcg gaaataatgc ctttgcaggt ggtattcccg ttattgattt
     4861 tagtgctatt gctaatcaag taaaagatta tgcaatgcaa cttcaacaat acgagcaaat
     4921 gtattctcaa ttacaacaac agcttttaat ggtgcaaatg caaaaacaaa atttagaaag
     4981 attatctaaa gaagattggc aaagcttagg cacagtgctt tatcaagtta gaggtgtaat
     5041 gaatagagta aatggaattt cttatgatat aggcaatgta tcacgaaaat ttgaaaatac
     5101 ttacaaaaat tttgcaggct atagcgatga tctcacaaac gccacaaatg aaagtgaaag
     5161 aaataaaatt tattctgata gatacaagca aattgcagaa acaaaccaaa atacttttaa
     5221 cggcacattg caacaacttg aacttcaata tcaagattta gaaagtgaag acacgcttat
     5281 cgcaaagctt aagcaaaatt cgcaaaattc taatggaaat ctacaagcaa tacaagctac
     5341 taatgatctt atcacttatc aaatagacga gataagaaaa ctaagatcgg ttattatgga
     5401 tcaaagcaat atgcttacta attatttagc gtcgcaaaat aatcaaagga taatgcaaca
     5461 ggcaaaaata gataaattct tagaaaatgc tgaaaaatct ggtagttctt ggggcaaatc
     5521 aaacccagac gctcttaaat ggaaataaaa tgatgttaaa atattttgtt tctatattaa
     5581 attaaggaga aaaacaatga aacattttat ttttggtggt ttattaagtt taggtgcttt
     5641 ggctttttta gcaggttgtg gcgatgaggc aaaaacaagc gattattata aaacacacat
     5701 agatgaggca aaggctagag tcgcagaatg taaaaaaatg gagaaaatga atgaaactca
     5761 acaaagggat tgttctaatg caaaatgggc gattgaaaca aatgggcttg agaatgcggg
     5821 tagttcttgg ggtaaatcaa acccagacgc tcttaagtgg aaataaacta gcgattatct
     5881 ttttaatctt tcttgttcca aatttagctt ttggagctga aaatgctgat gggattttgt
     5941 cgttaattag aaacggtatt ttatcttgga cgcctcttat taaaaccgct tgtttatggg
     6001 tattttggac tttagttgtt attgatttag tttggacttt tggtttaaaa gccttaagcg
     6061 gttttgaatt tggcgatttt atagccactc ttattaaaaa aataatgtat ataggtatat
     6121 tcctattttt atttaatatt gatcaatggt tgcaaattat ttttaatagt ttttcacaat
     6181 tagctacgag tgtaaataat ggcatatcaa ttactccaca aaatattata gagcaggcat
     6241 taaatctcgt aggtaagatt attcaatcta tggatttttg gagtcctggc gattcaatat
     6301 taaaagttgt agcgggtgtg attattttaa tagcttttgt tttaatggct attgatttgc
     6361 ttattgtcta tttaaaattt ttcttaatga atgtaattgt attttttgct ttggcgttag
     6421 gtggcttaag ccatttcaaa caaataggct taaatcccat aatgacggct attaaagtag
     6481 gtgtggaact ctttatgata caaggcttaa tggctctctc aattacaatg atagatgtaa
     6541 taaataatga aataacgcaa aaatcgacag ccgatgttat cttgcaaatt ttagtagtag
     6601 ccttaatctt ctgcatgatt acaaaaatgg ttccaggaat tattgaagcc gtatttaatg
     6661 gtagtattgg cgaaagtgcc ggagcttcag caggttttag agcggttgcc acaatggcag
     6721 caggagctgc ggcaggtgca gccgttggag cggttggggc tactcgtgct atgaatgcag
     6781 ctaaagcctt acatttagca gaaggtggag ccggtggaat ggatttagtt aaaggagtag
     6841 caaaaaatct agcaggtgca gggggcgaac acttaagaga taatcttaca agaggcagaa
     6901 tgccccaaca aatggctaat cgcttacaag aaaagcttag agatatacaa ggaaaagcta
     6961 gtgaaggcgg tatatcagca ggaacaccaa aacaagaaaa ctatcaatca ggaataaatc
     7021 ccgatgttat ggaataaaaa caaggagtaa gaaagaatga atattttcag acaaaaacaa
     7081 aagatagaaa aaagcgaaat tgacacttca aacaatcctt atcttaatgc aaaaaccgaa
     7141 tggctagaaa gatacggcga ttatattacc cgtgctaaaa attggcaaat cgtagcaatg
     7201 gctagtttag gtatttgctt tatctgtgtt ttatttttag gttatatagg ctcacaaaac
     7261 aaacttatac cctatgttat agaagttgat aaactaggaa atacggctaa agtaggaatg
     7321 gtgcaaaata tcgacttaaa aaatccaaat gtaataaaat atagcttaaa tacttttatt
     7381 tattcttggc gttctgtttg gggaaatgcc gaaactcaaa gaaaatttat ctttgacgct
     7441 tacgcttata tagaaccaag atcaaaagcg tttaattatt taaattcaga atttcaaaaa
     7501 aataatcctt ttgcacgagc cacaaaagaa aatgtgcgag tgaaaattaa aagtatcgtt
     7561 cctcaaaata ttgacacttg gcaagttgaa tgggaagaga caactacaaa tttaaatgaa
     7621 gatattcttt ccaaagaaac ctatcgagga ttaatccaaa tcaaacaaat tattccaaat
     7681 acagaagagc agatcttaaa aaatcctttg ggtattttta ttactgatct taattttgca
     7741 aaaattttat aaggagttga atatatgaaa aaaataatat tactaggttc tttaattgca
     7801 agttctttaa ttgctaacaa tctaaacgaa agagattttg caaatctcac gccaaaagaa
     7861 aaaaaagatt tagcaatagc ccaaaaatgg ataaactcaa aaaccactac tatacaagga
     7921 aacaatggag aggtaatttt tctttttggt gaatcaatgc caagcattgt aaccgcaccc
     7981 ttaagactta ccgatattgc tttagagcct ggcgaagtga ttaaagatgt gcaaataggc
     8041 gatagcataa ggtgggcggt atctttaagt ataagtggag aagagcctta tttaatctct
     8101 catatcattg ttaagcctac ggataaaaat ttacaaacaa ctatgaatat aatgacaaat
     8161 aagcgtgttt atcgcttaaa tttaatatcc gaagctaaga aatttatgcc cgcagtttca
     8221 tttaattatc caaacagcat tataaaaact cttgaagatt ataaaaacca aatgaaagca
     8281 aaatcagaag ctaaaaattt ctacaaaaca aaagatgatg aaattcctag caatattgaa
     8341 aatttagact ttggttatag tattgaaggt aacgcacctt ttaaaccttt aagaatctat
     8401 aatgacggca taaaaactta tattcaaatg cctaaaaatt taaaattcta tgaagcaccc
     8461 gcacttatgg ttttagattc tagcaatgaa aaacaaatcg taaattatcg cttaaaatat
     8521 gatactttta tcgtagatag actttttaac aaagcgattt tactttcaaa tgtaggctca
     8581 aaacaagaaa aaatcacaat cacaaagcat tctaacaaag ctaatcaaga tatagttaat
     8641 aatgtgcttt atgatttatc actccaaaat aaaaacaaaa aggaaaacaa atgagaattt
     8701 tatttttggc gttaatcgct ttctttataa cctcttgtgc taaaatgaat tcggattatt
     8761 ttaactctag ctttgcagtt gaagaaacaa aaataaacta caataaaatc gcagacgatt
     8821 tttcgcagtt tattattcca cactatccac ctaacaaaac tacatttttc attaatgaag
     8881 ataaaagcaa tcaagatttt tctaattatt tcatgaacgc attaagaaaa aaaggttatg
     8941 cgattagtaa cgataattct aaaaaagatt taaccttttt aagttatcaa atttcacaaa
     9001 ttgacaatga aaatatagtt gcaatattca acattaatga aagcaagatc aatgtaattt
     9061 ataaaattat tgataataaa cttgtcaaaa acaacacgac aagctttaat tttactccac
     9121 aaaattaaag gctttgccat gcttgaaatt aatacttcgc caaataaatt tttaccaaaa
     9181 aataataaaa gactttcaaa agtcccgatt ataatattat tttctattgc tgtaattgta
     9241 ttatttagta tattttatgt agccgtttca agaaaacaaa atttagaaaa acaagctaca
     9301 cagactacac caaaagaaca aatacaaaca actacaaacc ctaataatac aaatcttgat
     9361 acatacatta atgatttaat gcaaaatcaa aaattacaag caaataatac aaatccgcta
     9421 cctataccaa accctacaca accgcctata caagaaataa agcctcaacc tatacaaact
     9481 aacaatccac ccgtccttat acaagataac gctatggacg aaagagaaat gaaagttaaa
     9541 aaagatatgc aattaaaggc tttattaagt gatacaaagc ttaatattaa aacagaaact
     9601 aacaataaaa atcaaacaat taattttaat ccaccaagca atagcaatga agatattaac
     9661 gctattaatg tagttaatcc aagtccaagt ataggtttag aaggtaacac aaataaagac
     9721 gcacaagggc aacaattttt atcgcaaaaa aatgacaatg gctatctaaa atacacaaaa
     9781 caaaaaccat taagccctta tgaaattaaa gcgggttgga atataccagc aattttaatt
     9841 acaggcgtta attctgattt accagggcaa attttagccc aagtaaccca aaatgtctat
     9901 gatacttcaa caggtaaata tcttttaata ccgcaaggca ctaaggttgt aggggcgtat
     9961 tcaagtaatg taatttacgg gcaatcaagg cttttagtag cgtggaataa acttattttt
    10021 ccaaatggag atactttaaa tcttgatagt atgcaaggag cttcgcaaga tggatataca
    10081 ggctttgaag atgaagtaga taatcattat tttagaattt ttggatctgc ttttttactc
    10141 tcttccataa gtgcaggtat tgcgttatct gataattcag atacaaacag cgaaaaagaa
    10201 accgcctcgg ataaagcaat cgcacaagct attcagcaaa tggggcaagt tgcaagtgag
    10261 atgataagaa aaaatatgaa tattagccct actttaaaaa tccgccctgg atataaattt
    10321 aatatttttg taaccaaaga tattatttta gaacctttgg agcttagata atggataaat
    10381 tgttaaaaga gcgtagaatt attatttttg gtaacttact ttgtgttttt attttggtgt
    10441 tttatacttg tattcattgg agcaatttat caatgttaat tcctggttgg attgttataa
    10501 gtattttaga aataatattg aactttacaa ggatttagca aatgattgat attgctttaa
    10561 tcgaacaatg taaaaattcg aatgtagaaa cacaaatcat acaaaagatt attcaaatag
    10621 aaagcaacaa tcaacaattt gcgattaata tcaataaggt tggctctttt atgttaaaaa
    10681 ctaaaaaaga agctgaaaat ttagcaaaca atttcatcaa agggggttat agtgtagata
    10741 ttggacttat gcaatttaat tctaataacc ttaaatcttc cacattctca cattacagcg
    10801 tagaagattt attagatact tgtaaaaaca ttaaagcggg tagtgatatt ttttatttgg
    10861 cgtatgaagc aaccgatgaa aaactaagta aagaagaacg cattaatcaa gcgttaagta
    10921 tatataatac tggaaactta gaagacggct ttaataatgg atatgtagct aaatataatt
    10981 atatatctcc taatattaat ttattggaga aagctagaaa atccgaaaca cgcattgaaa
    11041 taaaatttca acctttcaat cttcaaactc aaaaaaggat acaaaatgat aaataatata
    11101 attataggcg gacgcttaac agaagatgcg gaaatcaaac gcacaaatca aggtgttgct
    11161 atatgcaatt ttactttagc taacaatagg aaatacaaag aaacggaatt ttctacctat
    11221 attgaagtat ccctttttgg tgcttttgct gaagttatgc aaccacattt aaagaaagga
    11281 attgctattg atgtaatagg agaattaatg caagatgttt gggatcacga aggcaaaacc
    11341 tattacaaac acaaaataaa agcaaaagag atagatttta gaacaccaaa aaaagaaaaa
    11401 caagcaatac aaaatattga agaaggggaa aattatgaag gattttaaag aattagaaac
    11461 aataccaaat tttagctatg aagtcgatcc gctaactgct gaagaattag gtgcatttga
    11521 agaaaatgcc ttaagcaaag aagacgccaa agaaggcata gaagatcaag gataattcta
    11581 tgaaaaataa agactttata caagaaacag ccgataaaat catagaaagt ttaaaaaatg
    11641 gaactgcacc atggattaaa ccttggaaag gtattgatct agctaacaat atgccttata
    11701 acccgattac taataagcct tacaatggca taaatagcat taatttaatg ctacaaaatt
    11761 ataatgatcc taggtggctt acttataaac aagcacaaag cattaacgca caagttagaa
    11821 aaggcgaaaa atctacttta attcaatatt ggcaatttag cgaaatggtt gataagttag
    11881 atgaagaagg caatgttatc acaaatgaaa aaggagaagt agagaaaatc gaagtaaaat
    11941 tagaaaatcc taaagtattt tttgcttatg tttttaatgc cgaacaaata gaaaatatgc
    12001 caaaactgga gcaaaaacac gagattgata attttcaaac aataaaagaa gcacaaaaaa
    12061 ttttagagga ttcaaaagca attattcatc atcaaggcaa tagagctttt tataattcta
    12121 caaatgatac tattacgcta ccaccaaaag aaaatttttt aagtgaaggt gcttattacg
    12181 caactgcttt acatgaatta gggcattgga gcggtcattc aagtagatta aatagagatt
    12241 taaataatcc ttttggttct aaagaatatg ccaaagaaga attaagagca gaaatcgcta
    12301 gttttttatt taatggtaaa ataggcttag attatgatcc agggcaacat ttatcatata
    12361 tcgatagttg ggtgcaaatc ttagaagata agccacacga gatttttaag gctacttcag
    12421 acgctacaaa gattgttaat tttattgaaa atctttcttt ggagcaaaaa caaaagatag
    12481 agcttgaaaa ctcaaataca caaaaacaag agcttacaca agataaggag ttaaacttgg
    12541 caactagaaa aacttacttg tatgttccat tcgcagaaaa agaatttgct aaaaaagcgg
    12601 gtgcaaaatg ggataaagaa gctaaaatgt ggtatgcccc taaaggtgca gatttaaaaa
    12661 atttcaatca atggttaaat caagagcaaa cacaaattta taataatgcg tatgatgaat
    12721 ttaaggcttt tttagaaaaa cacgaactta atattgaagg acagcctata atggacggaa
    12781 aactgcatag ggtcagcgtt ataggagata aagggcgaga aaaaagcgga gcttatgtag
    12841 ggtttttaaa cggacaccct gcgggatttg tgcaaaatta caaaacaggt attaaagaaa
    12901 attggaaaag tgctaattct tttgaaaata ctaaaaatca agaaatagac tttaaaaatg
    12961 caatggaaca taataaagcc atgaaagaag ctagagaaaa agagcttata caagcttatg
    13021 aaaaaacagc tttaaaactt gaagacgaat acaataatgc aaggtgggct aattcagaac
    13081 acccctattt aaaagaaaaa ggctttgata aaaatttcta tctcaagcaa gataaaaacg
    13141 gcaatttatt aattccttta agagatattg acggcaaata ttgggctaca caaagaatat
    13201 ttgctaatgg cgataaaatg ataggagcta caagaacggt agaagaaaaa gagcaaggca
    13261 tagaatatcc cgctaaaaag caaggtaatt ttttcttgct tggtgcaaaa aatttagata
    13321 atgtaaatga agtttatatt tgcgaaggct ttgcaacaag tgctagtgtt tatgaagcta
    13381 caaaatctcc cactataatg ggcgtagatg ctggaaattt agaaattatt gtaacaagca
    13441 taaaagaaaa ataccctaaa atgaatatta ttattgctgg tgataatgat gtaaaaaaag
    13501 aattaaacgg caataagaat gttggaaaaa ctacggcttt aggtataaaa gaaaaatacc
    13561 ccgaagtaaa agtcgtattg ccaaatttta caaatgaaga agcacaaaaa ggcttaagtg
    13621 attttaacga tttaatgaaa agcagaggat tagaagagat taaaaaacaa ctaaaagaac
    13681 aaattgccaa acaattaata gtcgagaaag ctaccactaa agcacttgat aaaaataaag
    13741 gcattaataa agaaatttca actaaaaaag atatagggat ttctttatga aaaaacaaac
    13801 taatcaagcc ttagtttata cactagggct tattggcatt ttcttaactt ttactattat
    13861 tagccaaatt gcaactcaat atttggcaaa atcttttaat tattctccta gtttaggcga
    13921 aactttgctt tatggatttt ataatccttt taagtggatt tcttggagtt atgcttatta
    13981 ttctttttat cctgattttt tcaaaaaatt ttttatggca atgtttgcag gtgttgcgtt
    14041 ttgttttatt gtttttattt tggtgaaact tgcctttttg cgtaaagcaa aagcaataga
    14101 aaatcttcac ggatcggcac attgggctac tttagaagag gttaaagaaa gcggtgtatt
    14161 cgataaagat aaaggcgtgt atattggtgg ttttgaacac aaaaaaacac ttcattattt
    14221 aagacacgat ggccccgaac atgtaatgct ttttgcacct acaagaagcg gtaaaggcgt
    14281 aagcttactt ttacctacac tcttatcttg gggcgaatct gctcttatat tcgacataaa
    14341 aggcgagtta tgggctttaa ctgcgggttg gagacaaaaa tacgccaaaa ataaagtatt
    14401 aaaattagat cctacttgtt tagatgatag tgccgtaaaa tttaatattt tagaagaaat
    14461 aagattagaa acaatgcacg aggttaaaga cactcaaaat attgcaatta atctcatttt
    14521 caaaggcgaa acgcccccta ctaatcctac tcaaggtagc acatcttatt ttaaaagtga
    14581 ggcgggaaat ttcttagttt caattatact ttatgcttta catttaaaaa aatatcgagg
    14641 cgaaaatacc ccaaatctaa ccgatattta taaatttatt aacgatccaa atcaaagtat
    14701 cgatgaacta ttagaagaaa tggttgaatg tgatatttct acaatggata aaaatacaca
    14761 agaaattatt caaagcattt caagatcaat gaaaaataaa gctacacaag aattaagcgg
    14821 tgtagtagga acagcttcgg aagctttaaa tctttatatt gatcctatct tagcaaaaaa
    14881 tacagcaaaa agcgatttta aaatcaaaga tttaatgaat tatgaaagcc ctatcagtct
    14941 ttatttaatc attccgccag ggcaaaagga taggttgcgt ccatttttta atttacttat
    15001 caatcaaatt tttagaactt taacggatga ttctttgaat tttaaaaatg gagaaaatat
    15061 aaaaagatac aaacacaaaa tgttagtatt agccgatgag ctaactatgt ttggaaagtt
    15121 aggagtgctt gaagaaaatc ttgcttatat ggcaggatat ggaatgaagt tttacggatc
    15181 tattcaagat atacaacaac tttattctat ttatggcgaa aaggaaacaa ttatttcaaa
    15241 ttgccacata agaatagcat ttgcaccaaa caaaatagaa accgcaaaac tcttatccga
    15301 aatgggcgga attacaacta ttattaaaaa atctcttaca agctcgggaa aaagaaccgc
    15361 cgtaatgctt ggcaatgtaa gcgaaacaat acaagaggtg caacgccctt taattactgc
    15421 cgatgaatgt atgcgattac cttcagccaa aaaagataaa gatgacaaga taatcgctcc
    15481 tggcgatatg ttaattttta ttgcagggca agcccctatt tatggaaaac aaattttata
    15541 ctttaaagat cccgcatttt tagcaagatc aaaagtaaca ctagataaac aagtcagcga
    15601 tattttataa aggagtaaaa atggcaaaaa tacattttgt tttaaatggt aaaggtggta
    15661 taggaaaaag ctttataagc tctttactat gtcaatattt tttagataaa ggagaaagta
    15721 tagtcgctat tgataccgat cctaataata caactttact taatgtaaaa gccttaaaag
    15781 ctaaattctt gcaacttatt gatgatgatg gcaaatttga tgtccgtgcc tttgataaaa
    15841 ttgtagaatt agcttttgaa aaaaaggcta aaaactatat tattgatagc ggtgcaacta
    15901 cttttatacc tttaattgat taccttaaag aaaatgaagt tttagacttt ttaacaagca
    15961 atagtttaga agtttatatg catgtcccta tcgtaggcgg acaagcgaga gatgatacca
    16021 ttttgggatt aacgcaactc acacaagctt ttaattgctc ttttgtggtg tgggttaatg
    16081 aatatcatgc atcaattatc aaagacaatt tagagtttga agaaactaaa gaatatcaag
    16141 ctatcaaaga aaaaatcaaa gctattattt atcttaatgc tttaagtaaa gatactttcg
    16201 gcaaagatct tttagaactc acttcaaaga atttaacttt tgatgaagct atgcaagata
    16261 aaagcttttc tttaatgtca aaacaaaggc ttaaaatttt caaagataaa gcatttatcc
    16321 aaataggcaa tatattatga taatatcatt atgatatcat aatgatatta ttttgatatc
    16381 attttaatat taaattaata ttattatgat ataattacat acagtaattt gaaggagtaa
    16441 aaatgcaaaa acaatatccc gaagtgtata gcttagaaga aagccttgcg atacttaaaa
    16501 aatataaaga tgatttgact aaagagcaat acgaagccat aagatcaaat ataggtaatt
    16561 ttgcaataga agatatgttt ttgaatgaaa aagatattat tgataatgtt aaaattataa
    16621 aaggcgaagc aacagctaat gaatgtattg ttgcattaaa gaaagaatgg ggagtgtctt
    16681 aatgtgggat tctcaagaaa atttatcaga gtttgataaa tttttaatca agactaataa
    16741 aataggtgca aaatcattag atgaattgtt tcgcaaagaa agaatgataa caaacaaaaa
    16801 agccttagaa ttaggcaaaa atcccattaa aggcaatttt gattatcagc atttaaaaga
    16861 tatacataaa gcactttttg aagatgttta tacttgggcg ggacaagata gaatgcaaat
    16921 ggggctaaaa gaaaaatttg caaaatatgc acccaatgga gcaattatta attttgttcc
    16981 tggaaaagag ttagataaat actctaaaat aatttttgat gaacttgcaa aaaataatta
    17041 tctaaaaaac tccaaagatc taaatcattt tgcaaaaaat ttagcaaaat ttatgggcga
    17101 aatcaatgct ttacaccctt ttagagaagg taacggcaga actcaaagaa tatttttaaa
    17161 tgaattagct aaaaatgcag gttataaact tgatttaaat ttaatttcta agcataaaat
    17221 gatacatgct tgcgtagaag cttcacaatt aaaacctgga agattggagg ctttaattaa
    17281 agacaatcta aaaaacttta gacaaaattt agatttggag caaaataaag gaatgtcgtt
    17341 ataatactat gagaaaagcc attgcgatat ttgccttttc ttttgcgttt cttttaatac
    17401 tctcatatct tattttttat tttggtggtt ttcattttaa ttatacaaga tcaatgcctt
    17461 tgggcttata caaagagatt aactcttcca ctttaaacaa aaacgatatt gtgcttttaa
    17521 aaataccgca aaagaaagaa attttattaa aaaagattgt tgcagtaagt ggcgattttg
    17581 tagaagttaa taaacaaggt gtgtttatta ataaaatcct tatgcctgat tctaaaattt
    17641 tttcatttga tagcaagggc aatccgctag aatttaaacc tttcaaacac acattaaaag
    17701 aaaatgaact ttttgtaatg ggcgaaaata taaaaagtta tgatagtagg tattttggag
    17761 ttataaatat actccaaaat gaagtaaaaa aagttaagat tgtaatatta ttttgatatt
    17821 aaaatgataa tattttaata ttaatataat attataaagg aaaataaaat gaataaaaaa
    17881 gaacttattg aagaaattgc aaaaaaacac catataatcc tagatgaaaa cgatcctata
    17941 ttagcagtcg ttagtgcaaa tgaaattatc tttgatgatt ttttagaaaa aatagatcta
    18001 ctttttacga aacacaaaac agatttagaa agttataaat ttaatatatt taacgaaata
    18061 agagaatata gcaaaagcaa tcaagaaata ttaaaagata ttttaacaca agcacaaaca
    18121 aatcaaaata caactaagcc cccgcaagaa aaaacagaag acaccaaaga aaagaaaaat
    18181 acaaatatta attttttgat tatcgctatt gccagtcaaa ttatttttct tcttgttggt
    18241 ttaattatag gaataacaat ataatattat tatgatatca ttttaatata attttaatat
    18301 tatattaata ttattatgat attattttaa tataaattaa aaacaaggtt taattatgat
    18361 tatatccgta gtaaatgaaa aaggcgggag cggtaaaacc acattagccg taaatctttc
    18421 cgcaagatta gccgaagatg gcgataatgt tttacttatc gacgcagatc cgcaaaaatc
    18481 gactgaagtt ttttcagata tgagaagtca atcaaattta gagcctttat tttcaaatgt
    18541 ttcaaaaact ggtgttagtt taggcgatga gattaaaaga atgaaaaatg cttttgatag
    18601 tattatagtt gatacaggcg gtagagatag taaagaaatg cgaaaagcta tactttcatc
    18661 aaatattatt atcattccta caattccaag tcaatacgat gttaatgtgt tagatcatat
    18721 gttagaaatt tataatgaag taattgaaat taaccctaat ttattagctt tggttttagt
    18781 caatagggtt tcacctaatc cttttttagc aaaagaatta gaaaatttaa aagaatacat
    18841 taacgaagcc aaaaaagaaa aaggcttgga taaagtaata atgcttgaaa gcgtaattta
    18901 tgaaagacaa gcttatcgca aagcagtaat agaaggtaaa agcatgaaag aattttgcga
    18961 taaaaacgat aaagctttaa atgactttga aaacttttac caagagcttt taaaaatagc
    19021 aaatgaaaaa ctaggagtat aataatggga tttaaaaaac taagttcaga agcaccaaaa
    19081 aaagaaaatg attttgttaa ttctgctcgt ggagaaacag gcaatacaaa aacaggcaat
    19141 acaaaaacag gcaatacaaa aagaaataaa aagcttatga taaattttac agaagaagaa
    19201 tatcaaattt taaatcaaga gtctaattca atgggcttaa gcttaaattc ttatgtaaga
    19261 tttaagattt ttagaaaaga ttaataatat tattttaata tcataataat attattatga
    19321 tattaaaaat tattcaaatt aatatcatta ctttcaatta cttccgcttt tttcaagtat
    19381 tgatatttta aatctttttc aagctttttt acatactttt ccattatttc aatattttta
    19441 tcactcaaca tagaaatagc atttgccact ttgctaattt tgctttcttg cattgaaaat
    19501 ttttctatat acccatcaac atcgattttt ctatttgcgt aaaatccctt agtaacatct
    19561 gccactttgt ccgtatttaa aaataaatat tcaaattttt caaacctttt tatctcttca
    19621 tcatcgatca aggtttgttt aatttcttca ttcattgcga taagtccttc tttattggca
    19681 gaatttacaa taaagccgtc aatttcaata caaacacttt cagtatccat ggaatctatt
    19741 tctttatagc taaagcctaa ttttttcagc tcgcctttaa atattgaagg tgtagagttt
    19801 gatatttttt taagtgaaaa ttttaaagct ttcaattctt tttctttaat attttcatct
    19861 atatctttat cctgttctgt gagtttgatt tttaattcaa taatattttt taaaaccttt
    19921 ctagttttca tttcttgacg cttgttattg ttttcttctt gtatcttttg cattctctga
    19981 tctgaaaaac ttacatttaa attataatca tttgcgactt ctaaaatatt tcttttaaat
    20041 ttatcatctc ctgtaatatt aagatgattt ccgaatctat caattgccat aagcaaagaa
    20101 tttaaaagaa attctttatc atctttatca ttgataagag atacttttag catttctcct
    20161 ttgtctatgg ctttattaaa accactttta tatacagcat aaccttcttt tgttatataa
    20221 tctacatttt caaatatttt aggtttttcc tgggttgatg atagagtatt ttcattttca
    20281 ttgattttcg ttttagttct tcgcaaagcc cttgtagcct cttcgtttcc tgataaggat
    20341 tcactaatta aaaaatctct ataagacact cttttatatt tttgataaag ctctttttgt
    20401 ttatttttaa aaatcattct ttggttttta acatgtgcaa aggtattttt attaaatttc
    20461 attgatggta ttgaagtttt aaattcattt cgcctaagct ttaatattct aagttctttg
    20521 tcaagctctg cttttttctc attttcaatt cttaaatact tttcccataa tgttttagaa
    20581 gtttctttat ttggtcgctg atattgttct tttatttcgt gtttttcttc tttaatattt
    20641 tgcgtatttt ctttttcttg ttttaaatct aattctttaa atcttttctc taaagcttgt
    20701 ttagacaacc ccctgtgaat actacttgcc ttacaaaata atttttcact tttagaagca
    20761 ataacaaaac cttttcttct ttctctaaat tcaagatcat attcagctaa aaattgttta
    20821 acatctttaa aagtagtttt ttcatctttt aacataagat ctacttgttt agaaagcttt
    20881 tcttttaccc aggtttcaaa attacaattc atagtgtgga tattatattt attactttgc
    20941 ttatcttttt gtgaaatatg attgtctaac ttcaaattat atttcttttc aagtttcatc
    21001 gctgtttctt gtaaaattct aacatcattg taaggattaa taacttttag tgtatgcgga
    21061 ttaactttat taattgcaat atgtatgtga agattatttg tgttggaatg aaccacgctt
    21121 aatctttgat gatcttccat tcctaaagac tttgcgattt cttcttcaat tgcttgtaaa
    21181 atttctaaag tagggttttc atcttcttga aaagaaacta ctaaatgcaa ggttttatct
    21241 tgttttgttg tggtattaag cttttgagta ttgataatct cattaatatt atcttcatcg
    21301 ttatcaaaag aacaatttgt aaaatgataa ccttccactt tatccatttc attgttttta
    21361 tcaagcatat aatcaaccaa tacttttgca ttattattgt ctttgtctaa aatatagttt
    21421 gataaatttt taaaacttga tttattctgc tttttgcttg gaatcttttt gattatcatt
    21481 ttgtattatc cttttggctt gttcttttaa aagtatttgt aaatctaaaa tttgatctac
    21541 aatctcatca atatcattat aagttctttt gtttgaaaaa ttgactttat tatcttcgtt
    21601 tctaaccaac caatgtttaa aaagtccgcc caatcttcct atatcccccg caatatttaa
    21661 aacatcgtgt gcgacttttt gatctactat gcaagtaata ggataattca tagctaaatc
    21721 tctaagatat cttgaaattg ttaatccgtg tcctttggct ttttgcatta tatattcata
    21781 ttcgttttga gataatctta ttgctattct tttattttta ttcattttgg tgtcaatcct
    21841 tttagagctt tagcgataaa actttgcaaa tgttcgacat ttgcatatcc tgtcttatta
    21901 ctccaagcaa ttataacaaa atataagcta tttttacaaa catttcaatc attttattaa
    21961 aatacactat aatttgctaa aatatactaa aatatcttat aatatactat tttataaagg
    22021 atttgcaatg aaaagaggtt ttgcaaaaat agaattcttc gctaatttag aatacttaaa
    22081 acaagaatat aataaaggct atgtagtttc taaaatactt tatgaaaaag caaagcaaga
    22141 taaaaatata tcaatggttt attcacaatt taataaatac ttcaatgaag tttttaaaaa
    22201 taaaatagag aaaaaagaaa taatacagga aaataatcaa tctttagctt tggaaaataa
    22261 agaacctatc aagctaaaga ttaacacaaa atcaaaaaaa gtatttgacg ctaaatttgg
    22321 aaaagatatc aaagaagatg atttattata aaaatattta agaaaataaa aaacttaaac
    22381 aattaaattc tcattttacc attactttaa gtttcaaaga aaaatactct aaacttaaaa
    22441 agaaatattt ttatttataa aaagcctata ttatcgataa tcaaagcaat taaaccttaa
    22501 tttgaaaact ctacttttca aatcataact tctttttggt gtatatagca aattgcacct
    22561 aagtaggtgc tataatttgc gtagatatgg ggtgcggggt gtgcagtcgc ctagagcgac
    22621 aaacgaactt gaccccgccc tattgttgta agaagagtaa gagacgctta gtctcttcaa
    22681 aatttgcaaa tgagcgttag cgaaatttgc tgtaaaaaat tttttgtttt caagagtaga
    22741 ttaagaagga aaagacttaa aaaaaatgct ttcaaatata ggtataatag tgctttgata
    22801 aggtttttaa ttttcccacc agtgggacaa attttcccac cagtgggaaa aaaactgctc
    22861 gtggtgggaa aattattttt agaaaaaatc atgtttccaa ataaattggg aaaaaattgc
    22921 tttttttact taaatatgtt tcattttttg ggaaaattgg aaattgtttt tgaatttgta
    22981 agaatagata tagaagagat agcttaatta aaaatgcttt taaatatcta ttttatagtg
    23041 ctttgaagca cttttaatct gtctcatcag tgagacaaat agtctcatca gtgagacaag
    23101 ttagctcacc tgtgagacgg attgaagtta ctttgtctca aattatgata caatatttta
    23161 tattttataa aatatttatt gctttttgtc tcaaattatg atacaatatt ttatatttta
    23221 taaatcagag gaataagata tgaataatga aatagaaatt aaagatttaa atgaaattaa
    23281 taaaaataac aaacagcaag tagtttatag aaaagataat ctatctactg attgtattac
    23341 tggagaagtt atagaaagaa atcaaattat tgttagaaaa gttcaaacaa gagaaagttt
    23401 tatcaaactt tttactgaaa atattcatta tattattaat ttagaacctc aagaaaaaac
    23461 tttatttttt acattgcttt cttcagtaga ttataaaaat gttgtaagat ttgataaatc
    23521 tatgaaacaa aatattattt tagataaagt tttaagtaga gctggaatgt atagagcttt
    23581 aaatggatta atagaaaaga aagtaatttt taaaatagat cgagattttg ttaaatcgta
    23641 tgctggtgtt ggtagtgatg attgttattt atttaatcca aatttagtag gacgtggatc
    23701 ttggaatgat ttaaaaaatt taagacatac tattactaga gaatgggatt ttgaaaattt
    23761 agaagttaga gaaaatttag aaatagaaga agaatatcta ggtcttgatg aaataaaaaa
    23821 caatcaaaag caatatcaag taaaagaaat aaatcaagag catgatgaaa cgactaaagt
    23881 aaaaaataca gaaattgtta ttgaagaaaa aaataactct gcaaataatc aatatagctt
    23941 cgataaaaaa gaagagccga gcataaataa aaaagtctta atctctaatg atacacaacc
    24001 ttctttattc aatgaaaatc aaaaagaaca agaagctaga ctatttatag aaaagtttgg
    24061 tggaatgttt agcggtgcat atcaccctac aaaatccgcc aaagagctaa aaagagaaaa
    24121 actagatcaa gatttaaaag aaggtaaaat atgaaaaagg tttttttaga tacaaatatc
    24181 tttattgatt tctttgaaga aacaagagaa aataatcaac aagctaagca actaatttat
    24241 tttttaatat caaatgatat aaaaataatt ttttctgaag atatgatttc tactgtagcc
    24301 tacattctta aaaaagaaaa tttaggtaaa tttactcatt ttataaaaac catttcatta
    24361 gaaaaagaat ttgaaatcgt ttcttttggt gcaagtgtca ttaatatggc ttgtgattat
    24421 tatgataaat atcaaggaga ctttgaagac tatttgcaat atttttgtgc tgaaaaagaa
    24481 ggttgctgtg caatttatac tatggataaa aattttccaa atttaaaaat acctgtaaaa
    24541 agatatggtg agattgatat ttaaaactct atttttgtct caagaaaatg aaaaaaatag
    24601 aaaatttttt ataaaaaatg tatatttttt taccaaaaaa tgagacaaaa gcaaaaaatc
    24661 tatattttgt ctcaagaaaa tgaaaaaaat aaacattcaa ttgttaaaaa tgtatcattt
    24721 tattagaaaa aaccttgaca attaaattaa aaataatata ataacgatat tagtttttaa
    24781 tttttggaga attttttgag aaaaaataaa cttaattttt acttaatagc tagagagaga
    24841 gagagagaga gagagagagc agaataatct taaacttttc ttaattttta aacttttaca
    24901 acttcataac ccacac
//
LOCUS       DARAII010000012        24038 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.012, whole genome shotgun sequence.
ACCESSION   DARAII010000012 DARAII010000000
VERSION     DARAII010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24038
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.012"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            23..1795
                     /gene="pglF"
                     /locus_tag="SB143_000423"
     CDS             23..1795
                     /gene="pglF"
                     /locus_tag="SB143_000423"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_075460812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEF9748991.1"
                     /translation="MDFYKSKRLIFFLCFDAFLFILSIFLAFSLRFSGEIPSIFYEGM
                     IKAGLILLVLKIAFLFIFRIYKVAWRFFSLSEARKIFFALVLAEICFLLIFYFYDDFF
                     NPFPRSVIGIDLILSYMFVGTLRISKRMLIDFKPSRAKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARRELIGTYCDKFIVEDKSKIKDYVNEGVKTAIIALKLDQAE
                     LKALFEELIAYGISDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVASFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMLDHSEFNLYKINEDLSLYKEKITPVLLSILDEQ
                     SLDEIIKEYKPELILHAAAYKHVPLCEQNPHSAVLNNIVGTKTLCDVAKKNKVKKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLNSSDENFEVSCVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVSEAVQLVLQAGAIAKGGELFVLDMGEPVKIMDLAKKMLI
                     LSNREDLEIKITGLRRGEKLFEELLIDENDAKTEYESIFVAKNEKMDIQILNDYIKKL
                     QDCQNIAEILKEIVPEFNHNKDGN"
     gene            2010..2402
                     /locus_tag="SB143_000424"
     CDS             2010..2402
                     /locus_tag="SB143_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEF9748992.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHNDVLEAEHGVEAWDLLEKN
                     EDIKILITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGNGDSEAE"
     gene            2416..3264
                     /locus_tag="SB143_000425"
     CDS             2416..3264
                     /locus_tag="SB143_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEF9748993.1"
                     /translation="MQKFYYELFLEIQEQYKNLFLDFVFDLGVDAIEEKDNGIYIRSE
                     ENLEELAWAIEIFAQKLSQRFNLKENIILHKSIEKKENKDWVEEYKKGIKPILIDNIY
                     IHTTWQEEKENYLNIKINPALAFGSGHHESTYGCVKFLQKFAKNNSRSLDIGCGSGIL
                     AIVMAKLGCKVEICDTDDLAIESALDNAKLNNVNFAQAWHGSVDKAEGLYDLVVANII
                     ADVILILEKDIKKHLEDNAILILSGILDKYKTRVKEKFQDLELIDEMQINEWCSLVYK
                     NKTKEK"
     gene            3264..5210
                     /gene="ftsH"
                     /locus_tag="SB143_000426"
     CDS             3264..5210
                     /gene="ftsH"
                     /locus_tag="SB143_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEF9748994.1"
                     /translation="MNNNNNAPNNKGNPQGNNFFNKNPIFIFAIFAIVMIIVFKGFFD
                     GNGSLGGALNGTEVSKNVPYSELKKLIESGQINQVSIGQTTIKAVSSAQNTVYTTKKV
                     NDPEFVSLLDSKNIAYGAYSETNWFTDILFSWVLPIFIFFGIWMFLASRMQKNMGSSI
                     LGIGSSKKLVNSEKPKVKFNDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLL
                     VGPPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIV
                     FIDEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLD
                     AALLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLA
                     NIINEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINDKEKKIITYHECGHAL
                     IAETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEE
                     VFIGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLTGGQTIKDYSE
                     KMAESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVTALYEEETIEGAKVRDIIKSYE
                     NENNLPTRLQEINEEHKEESKQAE"
     gene            5210..5824
                     /locus_tag="SB143_000427"
     CDS             5210..5824
                     /locus_tag="SB143_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEF9748995.1"
                     /translation="MGKYIAKEGHWFIVIVFILFVICWIFYSFSVLLFLFLLVLLFIF
                     RIPNRVRVCNDSKAILSPIDGRITRIENTFDKYLGESVEISIKNAFYDAGAFYTPFKM
                     DINDIALKHGLFLCSELKSARIMNENVSIFASSNGSNVVLRIYAGSFDRKLKLDNLSH
                     SLTVGDKMGFLINGTISILLPRDTRIHVGLGDELKSGSLLGYLA"
     gene            5834..6559
                     /gene="pssA"
                     /locus_tag="SB143_000428"
     CDS             5834..6559
                     /gene="pssA"
                     /locus_tag="SB143_000428"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEF9748996.1"
                     /translation="MNNNKSQFIYILPNLFTAASAFLGVISIIASIQGNYYMALLYII
                     FSLICDGLDGRVARLTKTTSKFGIEFDSLADLIAFGAAPAIFFYMVIGSEFGRYGSLI
                     TAFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYSYYYYDFLRAYGII
                     FLILQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIVFSFLYLYPLESLVILAS
                     LYVIYGIIRAIYTLIFSKFKMKT"
     gene            complement(6556..7353)
                     /locus_tag="SB143_000429"
     CDS             complement(6556..7353)
                     /locus_tag="SB143_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEF9748997.1"
                     /translation="MQKEFFNELEKILYEQNLDNKFENFAIFYDDFKSQKFIFNHEQG
                     SIFKTNINSALKLLHPTRIRRPKFVNSTHSLAKIVHSIAHIEFSAINLALDASYRFKN
                     LPQQFYIDWLEVADEEIKHFKLLNAALDELGYKYGDFAIHDNLEAALEATKDCLSLRM
                     GVVHRGLEAKGLDANPFVVAKLESSNHPIKSLLKDVLHIILNDEIKHVSKGDNWWKFS
                     NQNNYDFIELCKMFNQFSLAGKKLNIEARIKAGFSKAECEAIAQFYA"
     gene            7516..7872
                     /locus_tag="SB143_000430"
     CDS             7516..7872
                     /locus_tag="SB143_000430"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEF9748998.1"
                     /translation="MKKLNEEEARVILNKGTEAPFSGKYNNFYEKGIYLCKQCGSKLY
                     RSEDKFKSGCGWPSFDDEIKGAIKRLPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKN
                     IRHCVNSISLEFVKGE"
     gene            7876..8514
                     /locus_tag="SB143_000431"
     CDS             7876..8514
                     /locus_tag="SB143_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEF9748999.1"
                     /translation="MFSNVGSELYLMFFAGITLLAVLNPFGNLTQFLAMSDGLPLALR
                     KKLFRTILYTALAIVLAFLFSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTK
                     LATQSFDSYQEANEKEILRQSLIPMAFPMLVGPGTLASVIVISEDGGLDIAFGGVIIA
                     FIFMFALFHFAATIEKIVGKLILHVFSRIAQVFIVAMGCKMIIIGIKNIFNI"
     gene            complement(8600..9253)
                     /locus_tag="SB143_000432"
     CDS             complement(8600..9253)
                     /locus_tag="SB143_000432"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEF9749000.1"
                     /translation="MKSSILYSKLMDAPKDAPVFLSQKLEPDFILKAYRFGLFPWTNK
                     PVTWWCPDPRCVLNPSEIHIQKNMKKFINLYQIKLDYDFLSLIHLCRNTRPQSWIDDE
                     FIENYYELFKQGYVHTLELYEDKELIGGIYGLIIGKVFFGESMVSLRKNASKIALIKL
                     CKLLKPYDFVIDCQVYNKHLEFMGAKNIERKTFLNILKEKCDQESGFTNFSTLINQI"
     gene            complement(9228..11345)
                     /locus_tag="SB143_000433"
     CDS             complement(9228..11345)
                     /locus_tag="SB143_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749001.1"
                     /translation="MKYQENLQKYLDNAKHLSTINRHEFTTCEHVLFAILKLSSDFKS
                     IFEELADAEFELLESELKNYIAEKNQSLDQEIEPVNSIVLDEILNHKNEIKIIDFLEK
                     LIQDDRTYSSFLLQKHGMNLEKIQDFKQNSEIENLNSYASDLTLLAQKGKIDPLIGRK
                     FELERIIQILSRRKKNNPILIGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIFSLDI
                     AGLLSGTKYRGDFEKRIKEVLEGLQKLPNAILFIDEIHTIVGAGATGESHTDFSNLLK
                     PALSNGTLKCIGATTFMEYKNTFDKNKALSRRFAKINVDEPSQEEAFQILQGLKSKYE
                     DFHKIKISDEVLQQAVVWGKKFFSDKYLPDSAIDLVDELGASYVLKAKTKKNADIKDL
                     EQVLAKMTHHHKMFEFDQNKALMNLSLNLKAKIFGQDEVIDKLVATLKQSFAGFKNLN
                     TPRGVFLFTGSSGVGKTELCKVLAEFLGLNLERFDMSEYAEKHSISKLIGSPAGYVGY
                     EDGGLLSNAVRKNPFSLILFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKADFKNTII
                     IMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLDDTVLVKII
                     QKELDEISKNLKNIQLVADEKAKLYLAKKAYNKEFGVRLLKRIISEEIGEKISDEILF
                     GKLKKGGIAKIKLNKNEKLDLIF"
     gene            complement(11342..11632)
                     /locus_tag="SB143_000434"
     CDS             complement(11342..11632)
                     /locus_tag="SB143_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEF9749002.1"
                     /translation="MPKLKVLEKSKLKEPKMFKVILLNDDVTTMDFVIEVLINIFYHD
                     FETANKIMLEVHLNGSGICGIYTQEIALSKQKKVSDAAKLANFPLQTRVEEE"
     gene            complement(11632..12237)
                     /locus_tag="SB143_000435"
     CDS             complement(11632..12237)
                     /locus_tag="SB143_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEF9749003.1"
                     /translation="MKKKTILSFFIIIGFFISACSHQEDIQNDFMFEEYSKGDKIVLN
                     SVNGGAKTLIRTDKGFIVEGEEDKVLMIDFFGTFCAPCKEEALELSKLWKNNSNKFII
                     MGLTHFEDVSDETVKKFADDYGAYYFLSNDSQNDRIIAQILKDIDYQSMEQLPFKVVM
                     KNGIYQNLSNYWDSNTSTNFYLGKIPTDFIQDDLDKIYKEK"
     gene            complement(12247..12699)
                     /gene="smpB"
                     /locus_tag="SB143_000436"
     CDS             complement(12247..12699)
                     /gene="smpB"
                     /locus_tag="SB143_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEF9749004.1"
                     /translation="MKVIARNKKALFDYSIIERFESGVVLKGSEVVALRAGRANLKDS
                     FVRIIKGELFLLNAHISHLSTTHSYYKHEERAARKLLMHRKQIDKLLGKVSIEGYTLV
                     VLELYFNHKNKVKATLALAKGKNLHDKRESLKKKQADMEARSAMKNYK"
     gene            complement(12696..13466)
                     /locus_tag="SB143_000437"
     CDS             complement(12696..13466)
                     /locus_tag="SB143_000437"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEF9749005.1"
                     /translation="MKAYAKANIFLKLVGFDKRRYHLLESRFILLKNLFDEIHIVEKS
                     SNSPKGFEIISNFNCEDNIITKAYHLLCQNGYQNKLEEFFKTKSLKLIKNIPTCAGLG
                     GGSSDCASFLMLINEELNLKLSTQKLIELSTQLGSDIAFFLSGFESANVSGCGEIIEE
                     FNDTIPSLEWVFPEVSCQTKKVYDEFDKGEIDFEKNILEAKIYKDLNTKELLETFKNT
                     QLNDLFTPCVTLYPKMFLFLEQGFFLSGSGSSVFKVHQ"
     gene            complement(13463..13690)
                     /gene="csrA"
                     /locus_tag="SB143_000438"
     CDS             complement(13463..13690)
                     /gene="csrA"
                     /locus_tag="SB143_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEF9749006.1"
                     /translation="MLILSRKENESIVIGEGIEIKIVQTGKGYAKIGIDAPKSLMILR
                     KELLTQIKDENLHSVVKNDVKLDDLSKKLIP"
     gene            complement(13684..14502)
                     /gene="truB"
                     /locus_tag="SB143_000439"
     CDS             complement(13684..14502)
                     /gene="truB"
                     /locus_tag="SB143_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEF9749007.1"
                     /translation="MNKIFVAFKPAEMSSNAFLGQIKKRYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYQATLWLGVKSLSLDNKNIQEIKLIKAFDIKLLEQIK
                     MELLGKISYTPPQFSAKRIEGKRAYEFAKRGENIELKSCIMEIFSCKIIHYTHPFLQL
                     ELSVSEGAYIRSYCELFAKKLGINATLSSLERTREGEFFYNHEKSLNVLEYLNLKPNF
                     IKDLTKLENGTKISLEELKFQDEGFYYIENKKYFSIINIKENKVEYLLNKVEKC"
     gene            complement(14499..16559)
                     /locus_tag="SB143_000440"
     CDS             complement(14499..16559)
                     /locus_tag="SB143_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEF9749008.1"
                     /translation="MNLFTGLNESQKEAASHIDGPMLILAGAGSGKTKTITTRLAYMI
                     GKVGIPAINTLTLTFTNKAASVMKNRALSLLNSNENPLLCTFHKFGLLFLKLHIERLG
                     RKNNFIIIDNDDSKKILKELINDDKTSPHQILQFISHFKNESKSVQDVFNDLELLKDN
                     EIKHQALQKIAIYYQNYQEYLLKHNFVDFDDLLLLTNILLENDQNFAKEQSSFYRYIT
                     VDEYQDTNALQYKILKNLCCIHENICVVGDDDQSIYSWRGAKIENILNFQSEFSNVKL
                     VKLEQNYRSVGMILKAANNLISHNKKRLGKTLLCTKDEGEDVQILSSDNEKIESVLVA
                     KKIKELLNSGIYAGEIAVLFRINALSRSIEEAFMKEKIPYKLLSGMRFYERLEIKDLI
                     CYFRILINPNDDLSFKRIINRPKRSIGEKALQNLEDYAQKRKISLFEALCESDGSVGI
                     FSLKKAQNEAKKFIQNIYKLREYSDLKKMIEKFEELFALKEFYALQEDGDERVLNIDE
                     FYASIKEKIKEEPQTTLEDILSEISLLSDQDGIEGECVYLMSVHASKGLEFDHVFIVG
                     LEEGFFPLNESDIEEERRLAYVAITRAKKCLSLSIAKSRFYRGSRTELDSSRFLEESQ
                     LTKKISINKTEQGYHKGDLVKHKIFGIGRVISVNKSAKEEKLTINFGGIERIIMASFV
                     EKAV"
     gene            complement(16556..16993)
                     /locus_tag="SB143_000441"
     CDS             complement(16556..16993)
                     /locus_tag="SB143_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749009.1"
                     /translation="MIEKILENENFIALMQKNCYDLLSILIQENIEFSIVANTNFIDF
                     DPVLPENLDVKQNPFALFVLGGYTFESIQLEKDHIQFHAGFGPDDFASYVKVDLGAIT
                     QIQVENSVLFVNFSFYKRKDNTKSQKSKNIFLNNPKNKDIFKK"
     gene            complement(16993..18708)
                     /locus_tag="SB143_000442"
     CDS             complement(16993..18708)
                     /locus_tag="SB143_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEF9749010.1"
                     /translation="MLTWDLGVLFKNEDELENTTQNYIQQSKEFKKNYSTTLDKLNPD
                     DFLNALKEYEHLHLILSKIMTYAYLCFAKDSSKGSFYAKYEQECKKIEENLLFFELEF
                     CELSEEKTKELIKFCKGYDFYLQNLLQNKRYNLSQKEERIMLYLSNTGANAFSRLFDE
                     SMTALKIPFEGNKLSEEEILSKLYNNDRKIRKKAAKKFTKALDKNLNLLTFIFNMIKT
                     ELNNICKLRGYESAETPRHLQNQITQQSVNSLIQTTQKHFYLVSNFYKRKKQILGFNK
                     LKDYDRYAPIGKEAKFSFEESKKIILNAFYDFSPVFGDIAKEAFEKGWIDVYPQDKKQ
                     SGAFSHSATPDTHPFILLNYTDGRRDLFTLAHELGHTIHQKLSYNVSFLNQNTPLTTA
                     ETASVFAEMLVFDYVKNKLKKEELLALYAAKIEDIFATLYRQINFTCFERRIHANENE
                     LKSEEISQIWMEESQKMFGESVELSKNYALWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSNACSNFKELYIKMLSLGGSVSPKELVGMFGFDIEDKSFWEIGIVEIKKLIDE
                     FMRLK"
     gene            complement(18718..19599)
                     /locus_tag="SB143_000443"
     CDS             complement(18718..19599)
                     /locus_tag="SB143_000443"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEF9749011.1"
                     /translation="MRHLTTTKDFTNDEIMELFEEARNFLDEKPRTLLEGKSVTTIFF
                     ENSTRTLSSFESAARRLGARILRLDVSRSSSSKGETLYDTATNLDAMSPNAIIVRHAN
                     SGVPHILASHMHCPVVNGGDGKHAHPTQALLDLFTIYEHFKGDIKGRKILIVGDIKNS
                     RVASSNAELLTRFGLDITFVAPPHFMPHSPLKKSYSLNEDLISKTDIIMSLRTQTERH
                     NKIIYGSLKDYANDFCIKLDLIKDKKLILLHPGPVHRNIDISDEVMDDERALVLKQVK
                     NGVAIRMAVLKKLILES"
     gene            complement(19605..20828)
                     /gene="sstT"
                     /locus_tag="SB143_000444"
     CDS             complement(19605..20828)
                     /gene="sstT"
                     /locus_tag="SB143_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEF9749012.1"
                     /translation="MFSKLVQSYAKGSLILQICAGIILGILVGISSKEIAEVVNLLGV
                     LFTNALKAIAPILVFILILTSICTRDFSQSSSKIRNIVILYIVGTFLAAACAVIASFM
                     FPVELVLEGVQKAENTSPMHLNEIFKNLLLNIVDNPINALSSGNYLGILAWAIGGGIA
                     LKNCSQEAKQIFVDINEGVLKIVKFIVKLAPFGIFGLVANSVAQTGAQGLLSYAKLLV
                     LLVLTMLFVAFVINALIVFIYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGINKEFYSISIPLGATINMAGAAVTIAILSLSAAHSVGIQVSFLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVVQDSVETALNSSTDVL
                     FSAICSKDELNYDIR"
     gene            20980..22179
                     /locus_tag="SB143_000445"
     CDS             20980..22179
                     /locus_tag="SB143_000445"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEF9749013.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGYFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAKEYMPAAISYARALCDKVYAYAKA
                     HPQELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSVPCVESMKIEDLRALVNKLIL
                     ESDLPKELFNPEKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYAPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCLGTNTGVN
                     DDVLSDFVMKNFSLTPNWIRDKFGLDKPSKDTFLYADVAARGQVGQKDYPWEKLDAID
                     QFKTLIK"
     gene            22391..22549
                     /locus_tag="SB143_000446"
     CDS             22391..22549
                     /locus_tag="SB143_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749014.1"
                     /translation="MFKYLIRDFKDLKALQKAKDKAEELFYLDSEMVENSKKMQGILK
                     GLIDKNNS"
     gene            complement(22546..23694)
                     /locus_tag="SB143_000447"
     CDS             complement(22546..23694)
                     /locus_tag="SB143_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749015.1"
                     /translation="MINGVNSYSSYNYTNTFSNNTPNTKSSNTVNETSNLVSDKSGAV
                     NKVLGYGVDENGFFTSDFNEAAGLPKDYKIYAKDIENFVNIQTKSLLSSYINIDIAKS
                     IGNAYKVFSQLLNDELNNKINFTKEDLVKIPQGFEFNQNTLEINKKYNLNDKEYKDFM
                     SNYQNYSPTSHNIKIMTFFSLDDKSDIFKYSLIDPTPYSNNDKTITKSGIFMTFFTGF
                     QAKNYFIEGQTSILGKMQGFDKTMSQSEIDNLNKFISENSMNFKGDIFKLFDLLNSDM
                     SIDDFKQKILEQKENLNNPTKNTNNKETSEEDKKKPFKPIQAQSSSETYKDDNKMNEL
                     LKKLLENKFGTSDELEILFGMKFSDDDTGEFNKILSLNSAPKSIDIKA"
     gene            complement(23758..>24038)
                     /locus_tag="SB143_000448"
     CDS             complement(23758..>24038)
                     /locus_tag="SB143_000448"
                     /inference="COORDINATES: protein motif:HMM:NF024950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEF9749016.1"
                     /translation="LDLAPKIRVNAVCAGTIKTPMAERLFQDFANITHGGNTDFYWQN
                     EAEKYPLKKVGQANEVAELIYFLASPKASFITGGLYLIDGGLTAGIPH"
BASE COUNT         7888 a         3532 c         3898 g         8720 t
ORIGIN      
        1 tcaagagcgt aaaggcttga tgatggattt ttataaaagc aaaaggctga tttttttctt
       61 atgttttgat gcatttttgt ttatactctc tatattttta gctttttctt tgcgttttag
      121 cggggaaatt cctagtattt tttatgaggg tatgattaaa gcgggactta ttttactggt
      181 tttaaaaata gcttttttat ttatttttag aatttataag gtggcatggc ggtttttttc
      241 cttaagtgaa gcaagaaaga tattttttgc tttggttttg gctgaaattt gttttttgtt
      301 gattttttat ttttacgatg attttttcaa tcctttcccg cgttcggtta taggtattga
      361 tcttattctt tcttatatgt ttgtaggcac tttaagaatt tctaaaagaa tgcttataga
      421 ctttaagcct tcccgcgcaa aagaagaaga aactccttgt atagtggtgg gtgctacttc
      481 aaaggctttg catttgctaa agggagcaaa ggaaggctct ttgggtcttt ttcctgtggg
      541 tgttgtagat gctagaagag agcttatagg aacatattgc gataaattta tcgttgaaga
      601 taaaagtaaa attaaagatt atgtcaatga aggtgttaaa actgctatta tagctttaaa
      661 actagatcaa gctgagctta aagctttgtt tgaagagctt attgcttatg gaatcagtga
      721 tgttaagatt ttttctttta caagaaatga agcaagagat atcagcatag aagatttgct
      781 tgctagaaaa cctaaagatt tagatgatag tgctgtggct tcatttttaa aagataaagt
      841 agttttggta agtggcgcag gcggaactat aggaagtgag ctttgtaagc agtgtattaa
      901 atttggtgca aaacatctta taatgctcga tcatagcgaa tttaatcttt ataagattaa
      961 tgaagattta agcttatata aagaaaaaat tacccctgtt ttgcttagta ttttagacga
     1021 gcaaagttta gatgagatta ttaaggagta taagcctgaa ttgatcttgc atgcagctgc
     1081 ttataagcat gtgcctcttt gtgagcaaaa tccgcattct gctgtgctta ataatatcgt
     1141 aggtactaaa actctatgcg atgtagctaa aaaaaataaa gtaaaaaaat ttgttatgat
     1201 aagtacagat aaggcggtac gtccaacaaa tatcatggga tgcactaaaa gagtgtgtga
     1261 gctttatacc ttaaattcga gtgatgaaaa ttttgaagtt tcttgtgtgc gctttggaaa
     1321 tgttttagga tcaagtggaa gtgtgatacc taaatttaaa gctcaaattg caaataatga
     1381 gccattaacc ttaactcacc ctgatatagt gcgttatttt atgctagtaa gtgaagcagt
     1441 gcagcttgtt ttgcaagctg gagctatcgc aaaagggggt gagctttttg tgctggatat
     1501 gggcgagccg gttaagatta tggacttggc taaaaaaatg cttattctat ccaaccgaga
     1561 agacttagag ataaaaatca caggtttaag acgtggagaa aagctttttg aagaattgct
     1621 aatcgatgag aatgatgcaa agacagaata tgagagtatt tttgttgcta aaaatgaaaa
     1681 gatggatatt caaattttaa atgattatat taaaaaattg caagattgcc aaaatatagc
     1741 tgaaatttta aaagaaatag ttcctgaatt taatcataat aaagatggta attaatatta
     1801 ttttaatata ttaaagtttg attttactga aattctttat gaaattttgg attaaaaaat
     1861 taaaaaacaa tcatttttat aaaaaaaatt aaacaaaaat atagtaaaaa atgctataat
     1921 tcacttttaa aattttttag aaacttgatt aataaggcta aaaaggatac aatatataaa
     1981 atttatgaaa attttgaaag gacgaaattg tgaaattgtt agttgttgat gacagttcta
     2041 ctatgagaag gattataaaa aataccctaa caagactcgg acataatgat gttcttgaag
     2101 ctgaacatgg agttgaagct tgggatttac ttgaaaaaaa cgaagatatt aaaattctaa
     2161 ttactgattg gaatatgcct gagatgaatg gcttagagct tgttaaaaaa gtaagagcag
     2221 aaaaaaaata tgaagatatg cctattatta tggttactac cgaagggggc aaggctgagg
     2281 tgattactgc cttaaaagca ggggtaaaca attatatagt taagcctttt actccacaag
     2341 tattaaaaga aaaacttgaa gatgttttag gtaccggcaa cggagactct gaagctgagt
     2401 aatttttaat aattaatgca aaaattttat tatgaactgt ttcttgaaat tcaagagcag
     2461 tataaaaatt tatttcttga ttttgttttc gatttgggtg tagacgctat agaagaaaaa
     2521 gataatggta tttatatacg ctcggaagaa aatttagaag agcttgcttg ggcaattgaa
     2581 atttttgccc aaaaattaag tcaaagattc aatttaaaag aaaatattat acttcataaa
     2641 agcattgaaa aaaaagaaaa taaagactgg gtggaagaat ataaaaaagg aataaagccc
     2701 attttaattg ataatattta tattcatact acttggcaag aagaaaaaga aaattatctt
     2761 aatattaaaa tcaatcctgc tttagctttt ggttctgggc atcatgaaag tacttatggc
     2821 tgtgtaaaat ttctacaaaa atttgctaaa aataattcaa gatctttaga tataggctgt
     2881 ggaagcggta tcttagccat tgttatggca aaattaggat gcaaagttga aatttgtgat
     2941 actgatgatt tggctattga aagtgcctta gacaatgcaa agttaaataa tgtaaatttc
     3001 gcacaagctt ggcatggttc tgtagataag gcagagggat tatatgattt ggtggttgca
     3061 aatataattg ctgatgtgat tttgatttta gaaaaagata ttaaaaagca tttagaagat
     3121 aatgctatac ttatcttatc tggaattttg gataagtata aaacaagagt aaaagaaaaa
     3181 tttcaggatt tagagcttat tgatgaaatg caaatcaatg aatggtgctc tttggtatat
     3241 aaaaataaaa caaaggaaaa atgatgaata ataacaacaa tgctcctaac aataagggta
     3301 atccgcaggg caataacttt ttcaacaaga atccaatttt tatttttgcg atttttgcta
     3361 ttgttatgat aattgtcttt aagggatttt ttgatggcaa tggatcttta ggtggtgctt
     3421 taaatggaac tgaggttagc aaaaatgtac cttattctga actcaaaaaa cttattgaaa
     3481 gtggacagat caatcaagta agtataggac aaactactat aaaagcagtt tctagtgctc
     3541 aaaatacagt ctatactact aaaaaagtta atgatcctga atttgtaagc ttgcttgata
     3601 gtaagaatat tgcttatgga gcttattctg aaacaaattg gtttacagat attttatttt
     3661 cttgggtttt gcctatattt attttctttg gaatttggat gtttttggca agtcgtatgc
     3721 aaaaaaacat gggaagttct atacttggta taggcagctc taaaaaactt gtaaattcag
     3781 aaaaaccaaa agttaaattt aacgatgttg cgggcgtaga agaggcaaaa gaagaagtta
     3841 aggaaatagt agatttttta aaatatccag aaagatacat taagcttggt gcaaaaattc
     3901 caaaaggttt attgcttgta ggacctccgg gcacaggaaa aacattatta gcaaaagcag
     3961 tagcgggtga agctgatgtg ccatttttta gcgtttcggg ttcatctttt atagaaatgt
     4021 ttgtgggtgt gggtgcttct cgtgtgaggg atttatttga aaatgcaaaa aaagaagctc
     4081 ctgctattgt ttttatcgat gaaattgatg ccataggtaa aagtcgtgcc gcaagcggta
     4141 tgatgggtgg caatgatgaa agagaacaaa ctttaaatca gcttttagct gaaatggatg
     4201 gttttgggac tgaaagttct ccagtaattg ttttagcagc tactaataga cctgaagttt
     4261 tggatgcggc ccttttaaga ccgggaaggt ttgatcgtca agttttggtt gataagcctg
     4321 attttaaagg tagatgtgat attttaaaag tgcatatgaa agatgtgaaa atttctccaa
     4381 aggttaaagt agaagatata gcgcgtttaa ccgcagggct tgcgggagct gatcttgcaa
     4441 atattatcaa tgaagcagcg cttttagcag gtagggattc gaaaaaatat gtagaacaaa
     4501 atgatcttgt agaagctgtt gaaagagcta tagctggcct tgaaaagaaa tcacgtcgca
     4561 ttaacgacaa agagaagaaa atcattactt atcacgaatg tggacatgct ttaattgctg
     4621 aaactacaaa gggtgcaaaa cgcgttagta aggtttctgt gattcctaga ggacttgctg
     4681 cacttggtta tacactcaat acgcctgaag aaaataaatt tttaatgcaa aagcatgagc
     4741 ttattgccga agttgatgtg cttttgggcg ggcgtgctgc agaagaggta tttataggcg
     4801 aaatttctac cggtgcaagc aatgaccttg aaagagcaac agatattatc aaggctatga
     4861 tttcaatgta tggtatgagt gaaattgcag gcttgatggt gcttgaaaag caaagaaata
     4921 cttttttaac aggtggccaa actataaaag attattctga aaaaatggct gaatctttag
     4981 atgattatgt taaaaagact ttggatgagc gttataaaga tgttaaagac actttaaata
     5041 cttataaggg tgcgattgaa accatggtta cagcacttta tgaagaagaa accatagaag
     5101 gtgctaaggt aagagatatt atcaaaagtt atgaaaatga aaacaatctt cctacgcgtt
     5161 tgcaggaaat aaacgaagaa cataaagagg aaagcaaaca agcagagtaa tgggaaaata
     5221 tattgctaaa gaaggacatt ggtttatagt tatagttttt atcttatttg ttatttgttg
     5281 gatattttat agcttttctg tccttctttt tttattttta ttggtacttt tgtttatttt
     5341 tagaatccca aatcgtgtaa gggtatgcaa tgatagtaag gctatattat cacctattga
     5401 tggcaggata actagaatag aaaatacatt tgataaatat ttaggtgaaa gtgttgaaat
     5461 aagcattaaa aatgcttttt atgatgctgg agctttttac actcctttta aaatggatat
     5521 taatgatatt gcgctaaagc atggactttt tttatgcagc gaattaaaaa gcgctagaat
     5581 aatgaatgaa aatgtaagta tttttgcttc aagtaacgga tctaatgttg ttttacggat
     5641 atatgcaggc tcttttgata gaaaattgaa gcttgataat ttatctcata gcttgacagt
     5701 tggagataaa atgggttttt taattaatgg aaccataagt attttattgc caagagatac
     5761 acgaattcat gtaggacttg gagacgagtt aaaatcaggt tctttattag gctacttagc
     5821 ttaaggataa aaaatgaaca ataataaatc acaatttatt tatattttac ccaatctttt
     5881 tacagcagct tcagcgtttt tgggtgtaat ttctataatc gcctctatac aaggcaatta
     5941 ttatatggct ttattgtata ttattttttc tttaatatgt gatggtcttg atggtcgtgt
     6001 tgcaaggctt acaaagacta cttctaaatt tggcattgaa tttgactctt tggccgatct
     6061 gatagccttt ggcgccgcac cggccatatt tttttatatg gttattggct ctgaatttgg
     6121 aagatatggc tctttaataa ctgctttttt tgttgttttt ggagcaatac gcctagcaag
     6181 atttaatgtc actacaggaa cttatgaacc atctgttttt ataggacttc ctatacctac
     6241 tgctgctgta gtaagtgcta tttggactta tagttattat tattatgatt ttttaagagc
     6301 atatggaatc atttttttaa tcttgcaagc gattttaggc ttgctaatgg ttagcaatat
     6361 acgctatcca agttttaaaa agctagattt taatagatca agtgttttaa aggttttgat
     6421 tatcttaatt attgtttttt cttttttata tctttatcca cttgaaagtt tagtaatctt
     6481 agcaagtttg tatgtgattt atgggataat aagagcgatt tataccctta ttttttctaa
     6541 atttaagatg aaaacttaag catagaattg agctatagcc tcacattctg ctttgctaaa
     6601 tccagccttt attcttgctt cgatattaag ttttttacct gctagggaaa attgattaaa
     6661 cattttacaa agttctataa aatcataatt gttttgattg gaaaatttcc accagttatc
     6721 acccttgctt acatgtttta tttcatcatt taagataata tgcaaaacat cttttaaaag
     6781 actttttatg ggatggtttg agctttcaag ttttgctact acaaaaggat ttgcatcaag
     6841 ccccttggct tctaaccctc ggtgaaccac tcccattctt aaactcaaac aatcttttgt
     6901 ggcttcaagc gcggcttcta agttatcatg aatagcaaaa tccccatatt tataacctag
     6961 ctcatctaat gctgcattta aaagcttgaa atgtttgatt tcttcatcgg caacttctag
     7021 ccaatcgata taaaattgtt gaggcagatt tttaaaacga taacttgcat ctaaggctaa
     7081 attgatagca ctaaattcta tatgcgcaat ggaatgaaca atctttgcta aagaatgggt
     7141 agaatttaca aatttagggc gtctaatgcg agtagggtgc aataatttta aagcagagtt
     7201 aatatttgtc ttaaaaatac ttccttgctc gtgattaaaa atgaattttt ggcttttaaa
     7261 atcatcataa aatatagcaa aattttcaaa tttgttatca agattttgct catagagtat
     7321 tttttcaagt tcgttaaaaa attctttttg cattttaagt ctttctaaaa tattttttta
     7381 ttttaatata taaaactaaa tttttactat aaaaaattca aactaaagct tttttggaaa
     7441 atacattttg ataaaaaata aaatttgcta taattcttaa gtagtaattt agaacaattt
     7501 catcaaggat aaactatgaa aaaattaaac gaagaagaag ctagggttat tttaaacaag
     7561 ggcactgaag ctccttttag tggtaaatat aataattttt acgaaaaagg gatctatctt
     7621 tgcaagcaat gcgggtctaa gctttataga tctgaagata aattcaagtc aggttgtgga
     7681 tggccaagct ttgatgatga aatcaaaggg gctattaaaa gacttcctga taaagatggc
     7741 attcgcacgg aaattgtatg tgcaaattgc aatggccatt taggccatgt atttgaggga
     7801 gagggttttt ctgctaaaaa tattagacat tgtgttaatt ccatctcttt agaatttgta
     7861 aaaggtgaat aataaatgtt ttcaaatgta ggctctgagc tttatttaat gttttttgcg
     7921 ggcataacat tattggctgt gttaaatcct tttggtaatt taacgcaatt tttagccatg
     7981 agcgatggcc tacctttagc ccttagaaaa aaacttttta gaactatact ttatacagca
     8041 ttggctattg tgcttgcttt tttattttca ggacctttgt ttatgaatta tatttttagg
     8101 gtttctttag atgatttgag agtttctggg ggtttggttt taattataat ggctattaaa
     8161 aatttattat tttcaaccaa gcttgcaact caaagttttg attcttatca agaagcaaat
     8221 gagaaagaaa ttttacgcca aagtttaata cctatggctt ttccaatgct tgtaggtcct
     8281 ggaaccttag ctagtgtgat agtgatttca gaggatggtg gattggatat agcttttgga
     8341 ggtgtgataa tagcttttat ttttatgttt gcactttttc attttgctgc tacgattgaa
     8401 aaaattgttg gaaagcttat tttacatgtc ttttcgcgta tcgctcaggt ttttattgtg
     8461 gcgatggggt gtaagatgat tataataggt atcaaaaata tatttaacat ttgattagac
     8521 aataaaaagt tgatatgaat gcaaatcaca agctaatgat aatcaaaaat taaaaaataa
     8581 gtataaaaat gaagagaagt tatatttgat tgattaaggt gctaaaattt gtaaatccac
     8641 tttcttgatc acatttttct tttaaaatat ttaaaaatgt ttttctttcg atatttttag
     8701 ctcccataaa ttctaaatgt ttattataaa cttgacaatc tatgacaaaa tcatagggtt
     8761 taagaagctt gcaaagtttg attaaagcta tttttgaagc attttttcta aggcttacca
     8821 tactttctcc aaaaaaaacc ttacctataa tcagtccata aattccccca attaattctt
     8881 tatcctcata aagttctaaa gtatgaacgt atccttgttt aaaaagctca tagtaatttt
     8941 ctataaactc atcatcaatc caactttgag gacgcgtgtt gcgacacaaa tggataaggc
     9001 ttaaaaaatc ataatcaagt ttaatttgat aaagattgat aaattttttc atattttttt
     9061 ggatatgaat ttcgctggga tttaatacac atctaggatc agggcaccac caagtaacgg
     9121 gtttgttagt ccatggaaaa agcccaaaac gataggcttt taagataaaa tcaggttcta
     9181 gtttttgact taaaaaaacg ggtgcgtctt tgggcgcatc cataagttta gaatataaga
     9241 tcgagctttt catttttatt aagcttgatt ttagctatcc cgcctttttt aagttttcca
     9301 aataaaattt catcactgat tttttctccg atttcttcgg aaataatgcg ttttaataat
     9361 cttactccaa attctttatt gtaggctttt ttcgctaagt atagcttagc tttttcatca
     9421 gcaactaatt ggatattttt aagattttta gaaatttcat ctaattcttt ttgaatgatt
     9481 ttaacaagca cagtatcatc tagatcgtta aaatgaagaa ttttatcaat acgattgata
     9541 aattcaggtg caaaaaaatc tttaatagca cggttgcttt tttcttcatt tttgcttagg
     9601 aatccaagct cattgctttc ttttagccct aaatttgaag tcatgattat aatagtattt
     9661 ttaaagtcag ctttaaggcc actattgtct gtaagctctg cattatcaaa gatttgcaag
     9721 aaagtattgc ttaaatcagg atgagctttt tctatctcat caaagaggat aagactgaaa
     9781 ggattttttc gaaccgcatt gcttaaaagt cctccatctt catatcccac atatcctgca
     9841 ggagaaccta tgagtttgct tatgctatgt ttttctgcat attcgctcat atcaaaacgc
     9901 tctaaattta aacctaaaaa ttctgctaaa actttgcaaa gttcagtttt tccaactccg
     9961 ctagatcctg taaataaaaa tactcctcgt ggggtattta aatttttaaa tcctgcaaaa
    10021 ctttgtttta gggtcgcaac aagcttgtca atcacttcat cttgaccaaa tatttttgcc
    10081 tttaaattaa gacttagatt catcaaggct ttattttgat caaattcaaa cattttatga
    10141 tgatgagtca ttttggctaa aacttgttct aaatctttaa tatcggcatt ttttttagtt
    10201 tttgccttaa gaacataaga agctccaagc tcatcgacaa gatctatagc actatcagga
    10261 aggtatttat cgctgaaaaa tttcttgccc caaacaacag cttgctgaag gacttcatca
    10321 ctaattttaa tcttatgaaa atcctcatat ttgcttttta agccttgtaa aatttgaaaa
    10381 gcttcttctt ggcttggttc atctacattg attttagcaa aacggcgact taaggctttg
    10441 tttttatcaa aagtattttt atattccata aaagtggttg cacctataca ttttaaagta
    10501 ccattgctta aggctggctt gagtagatta gaaaaatctg tatgtgattc tccagttgct
    10561 ccagctccaa ctatggtgtg aatttcatct ataaataaga tagcattagg aagtttttga
    10621 agtccttcta agacttcttt gattcgtttt tcaaaatcgc cacgatattt agtccctgaa
    10681 agcaatcctg ctatatctag gctaaaaatt ttagcatttt gcaaattttt tggaactttt
    10741 ttttcagcaa tggccaatgc aagtccttca actatcgcag tttttccaac tccagcttct
    10801 ccgattaaaa taggattgtt tttcttgcgt cttgatagga tttgtataat gcgctcaagc
    10861 tcgaattttc ttcctattaa agggtctatt ttaccttttt gcgccaaaag cgttaagtcg
    10921 cttgcgtaag aatttaaatt ttctatttcg ctattttgtt taaaatcttg aattttttct
    10981 aaattcatac catgtttttg taaaagaaag ctcgaatatg ttctatcatc ttggatgagt
    11041 ttttctaaaa aatcaatgat ttttatttca tttttatgat taagaatttc atctaaaact
    11101 atagaattaa caggttcgat ttcttgatcc aaactttggt ttttttctgc tatataattt
    11161 ttaagttcac tttctaaaag ttcaaattcg gcatctgcga gttcttcaaa tattgattta
    11221 aaatctgaac ttagttttaa tatagcaaaa agcacatgct cacaagttgt aaattcatga
    11281 cgattgatag tgcttaaatg tttagcatta tcaaggtatt tttgtaaatt ttcttgatat
    11341 ttcattcttc ttccactcta gtttgtaaag gaaaatttgc caatttagca gcatcagaaa
    11401 cttttttttg ctttgaaagt gcaatttctt gagtgtaaat tccacaaatt ccactgccat
    11461 taagatgaac ctctaacata attttattag ctgtttcaaa atcatggtag aaaatattga
    11521 ttaaaacttc aataacaaag tccatcgtgg ttacatcatc gtttaataat ataaccttaa
    11581 acattttagg ctctttaagc ttactttttt ctaatacttt taactttggc attatttttc
    11641 tttataaatt ttatctaaat catcttgtat aaaatctgtt ggaattttac ctaaataaaa
    11701 atttgttgaa gtgttactat cccaataatt gctaagattt tgataaattc catttttcat
    11761 tactacttta aaaggcaatt gctccatgct ttgataatct atatctttta aaatttgagc
    11821 aataatacga tcattttgcg aatcattact taagaaataa taagctccat aatcatcagc
    11881 aaatttttta accgtttcat cacttacatc ttcaaaatgt gttagcccca tgataataaa
    11941 tttatttgag ttatttttcc aaagtttgct aagctctaaa gcttcttctt tgcaaggagc
    12001 gcaaaaagtt ccaaaaaaat caatcatcaa cactttatct tcctcgcctt caacaatgaa
    12061 gcctttatcg gttcgaatta aggttttagc tcctccattt acgctattta atacaatctt
    12121 atcgcctttg ctgtattctt caaacataaa atcattttgt atgtcttctt ggtgcgaaca
    12181 agcgcttata aaaaaaccta taatgataaa aaatgacaat atcgttttct ttttcatact
    12241 agtcctttat ttgtaatttt tcatagcaga tcttgcttcc atatctgctt gttttttctt
    12301 taaactttcg cgtttatcgt gcagattttt tcctttggct aaggctagcg tggctttaac
    12361 tttgttttta tggttaaaat agagttctaa gactaccaag gtgtatccct caatactaac
    12421 tttgcctaaa agcttatcta tttgtttgcg gtgcattaaa agttttctag cagctctttc
    12481 ttcatgttta taataagaat gcgtagtgct aaggtgcgat atatgagcat ttagcaaaaa
    12541 taattcaccc ttaataatac gcacaaaaga gtcttttaaa tttgcccttc cagcgcgtaa
    12601 agccacgact tcactaccct ttaaaaccac tcctgattca aagcgttcta taatgctata
    12661 atcaaataag gcttttttat ttctagcaat gactttcatt gatgtacctt aaaaacacta
    12721 cttccgcttc cacttaggaa aaaaccttgt tctaaaaaaa gaaacatttt aggatataaa
    12781 gttacacaag gagtaaataa atcattaagc tgagtatttt taaaagtttc taaaagttct
    12841 ttcgtgttta aatctttgta aattttagct tcaagaatgt ttttttcaaa atcaatttcc
    12901 cctttatcaa attcatcata aactttttta gtttgacaag atacttcagg aaaaacccat
    12961 tctaggctcg gtatagtatc attaaattct tctatgattt caccacatcc gcttacatta
    13021 gcactttcaa aaccactcaa gaaaaaagca atatcactgc ctagttgagt gcttaattct
    13081 ataagttttt gagtgcttaa ttttaagttt agttcttcat taattagcat taaaaaactt
    13141 gcgcaatcac tactacctcc cccaagtcct gcacatgtgg ggatattttt gattaatttt
    13201 aagcttttgg ttttaaaaaa ttcttctaat ttattttgat agccattttg acaaagtaaa
    13261 tgataagctt ttgtgatgat attatcctcg caattaaaat tgctaatgat ttcaaaacct
    13321 ttaggagaat tagagctttt ttcaacgata tgaatttcat caaaaaggtt ttttaaaagt
    13381 ataaagcgag attctaaaag atgatatcgt cttttatcaa atccgacaag ttttaaaaaa
    13441 atatttgctt tagcatatgc tttcatggga tcaatttttt gcttaaatca tctaatttaa
    13501 catcgttttt taccacagaa tgtaaattct catctttgat ttgagtaagg agttcttttc
    13561 ttaaaatcat tagagatttt ggagcatcga tgcctatttt ggcatatcct tttccagttt
    13621 gaacgatttt gatttcaatt ccttcaccaa taacaatact ttcattttct tttcgcgata
    13681 atattaacat ttttcaacct tatttaaaag atattctact ttattttctt taatatttat
    13741 aatactaaaa tactttttat tttctatata ataaaaaccc tcatcttgaa attttaattc
    13801 ttccaaggat attttagtgc cattttcaag ttttgttaaa tctttaatga aattgggctt
    13861 taaatttaga tattctaaca catttaaact tttttcgtga ttataaaaaa attctccctc
    13921 acgggtgcgc tcaagagaac ttaaagtggc attaatacct aattttttag caaaaagctc
    13981 acaataagat cttatataag ctccttcgct aacgcttaat tcaagctgta aaaagggatg
    14041 agtataatgt atgattttgc aagagaaaat ttccattata caagatttta actctatatt
    14101 ttcacctctt ttggcaaatt cataagctct tttaccttct attcttttag cactaaattg
    14161 cggtggagta taagaaattt ttcctaaaag ttccattttg atttgttcta agagtttaat
    14221 gtcaaaagct tttataagct ttatttcttg tatgttttta ttatcaagac ttagagattt
    14281 aaccccaagc caaagtgttg cttggtatgt ttttggagtt ttttttaaaa atctaaaaag
    14341 cttagtgtat tgcccaaagg cgactattaa aacccctttg gcaaagggat ctaaggttcc
    14401 tgaataacct gcctttttat ttttatatct tttttttatc tgacctaaaa aagcattaga
    14461 actcatttct gcgggtttaa aagcaacaaa aattttattc atacggcttt ttccacaaaa
    14521 cttgccataa taatgcgttc tatcccgcca aaatttatgg taagtttttc ttcttttgcg
    14581 cttttattga cactaataac gcgtcctatg ccaaaaattt tatgtttgac tagatctcct
    14641 ttatgatatc cttgttcggt tttgtttata gagatttttt ttgttaattg actttcttct
    14701 aaaaaacgac tagagtctaa ttccgtgcga cttcctcggt aaaaacgaga ttttgcaatg
    14761 cttagcgata gacatttttt agcgcgagtg atagccacat aagcaaggcg tctttcttct
    14821 tctatatcgc tttcattcaa aggaaaaaat ccttcttcaa gtcctactat aaatacatga
    14881 tcaaattcca aacccttgct cgcatgcaca ctcataagat atacacattc tccctcaatc
    14941 ccatcttgat cgcttaacag tgaaatctca cttaaaatat cttctagggt tgtttgtggt
    15001 tcttctttta ttttttcttt gatgcttgca taaaattcat caatatttaa tacgcgctca
    15061 tcgccatcct cttgaagagc gtaaaattct ttaagagcaa aaagttcttc aaatttttca
    15121 atcatttttt ttaaatcaga atattctcta agtttgtaaa tattttgtat gaattttttt
    15181 gcctcatttt gtgctttttt aagagaaaaa attcccacac tgccatcgct ttcgcacaat
    15241 gcttcaaaga gtgaaatttt tcttttttgt gcataatctt ctaaattttg taaagctttt
    15301 tcacctatgc ttcttttagg cctattgata atgcgtttaa aggataaatc atcattaggg
    15361 ttgattaaaa ttctaaaata gcaaatgaga tctttgattt caagtctttc ataaaaacgc
    15421 attccgctta gcaatttata aggaattttt tccttcataa aggcttcctc tatggatctt
    15481 gaaagagcat tgatacgaaa taaaacagca atttctccag cataaatgcc cgaatttaaa
    15541 agctctttga tttttttagc caccaataca ctttcgattt tttcattatc tgaacttaga
    15601 atttgaacat cttcaccctc atcttttgtg caaagtaggg tttttccaag acgtttttta
    15661 ttgtgtgata ttaggttatt agcagctttt aaaatcatac ccacagaacg ataattttgc
    15721 tctaatttaa caagttttac atttgaaaat tcactttgga aatttaaaat attttctatc
    15781 tttgcaccac gccaactata aatgctttga tcatcatccc ctacaacgca tatattttca
    15841 tgaatgcagc aaagattttt aagaattttg tattgtaaag cattggtatc ttgatattca
    15901 tcgactgtga tataacgata aaaagagctt tgctctttgg cgaaattttg atcattttcc
    15961 aaaagaatat tggtcaaaag taaaagatca tcaaaatcta cgaaattgtg cttgagtaaa
    16021 tattcttgat agttttgata ataaatagca attttttgca aggcttggtg tttgatttca
    16081 ttatctttta acaattctag atcattaaat acatcttgaa cacttttact ttcattttta
    16141 aagtgtgaga taaactgaag aatttgatga gggctagttt tatcatcatt aatgagttct
    16201 tttaaaattt ttttagaatc atcattatcg atgataataa aattattttt tcttcctaat
    16261 ctttctatat ggagttttaa aaacaataag ccaaatttat gaaaagtgca aagtaaagga
    16321 ttttcattgc tattaagaag gcttaaggct ctatttttca tcacacttgc agccttgttt
    16381 gtaaaggtta gggttagggt attgatagca ggaattccaa ctttcccaat catataggca
    16441 agacgcgttg taattgtttt ggtttttcca ctacctgcac ctgctagtat aagcataggg
    16501 ccatcgatat ggcttgcagc ctctttttga ctttcgttta aacctgtaaa taaattcatt
    16561 ttttgaaaat gtctttgttt ttagggttgt ttaaaaagat atttttggat ttttgtgact
    16621 ttgtattatc tttgcgtttg taaaaactaa aattaacaaa caaaacacta ttttcaactt
    16681 gaatttgagt aattgctcca agatctactt taacatagct agcaaaatca tcaggaccaa
    16741 aacctgcatg aaattgtata tgatcttttt ctaattgaat ggactcaaaa gtatatcctc
    16801 caaggacaaa taatgcaaaa ggattttgtt taacatccaa attttcaggc aacacaggat
    16861 caaaatcaat aaaatttgta ttagccacta tagaaaattc tatattttct tggattaaga
    16921 ttgaaagtaa atcatagcaa tttttttgca ttaaagcaat gaaattttca ttttcaagaa
    16981 ttttttctat cattatttta gcctcataaa ttcatcgata agttttttga tttctactat
    17041 acctatttcc caaaagcttt tatcttctat atcaaatcca aacattccca caagttcttt
    17101 tggactcacg cttcctccaa gagagagcat tttgatataa agttctttaa aattgctaca
    17161 agcattgctc ttgtaaagcc cataaagtgc gagtactaaa agctgggcat aagcataagc
    17221 ataacaataa aaagggctat ggataaaatg aggaatataa ctccaccaaa gggcataatt
    17281 tttacttagt tccacgcttt caccaaacat tttttgagat tcttccatcc aaatttgaga
    17341 aatttcttca ctttttagct cattttcatt agcatgaatg cgtctttcaa aacaagtgaa
    17401 attaatctgt ctataaagag tggcaaaaat atcttcgatt tttgcagcat aaagcgctaa
    17461 caattcttct tttttgagct tgtttttaac ataatcaaat accaacattt cagcaaacac
    17521 tgaagcagtt tcagctgtag ttaaaggagt attttgattt aaaaaagaaa cattataaga
    17581 aagtttttga tgtatggtgt gtcctaactc atgagcaagc gtaaaaagat cgcgccttcc
    17641 atctgtataa tttagcaaga taaaaggatg agtatctggg gtagctgaat gtgaaaaagc
    17701 accactttgt tttttatctt gtggataaac atctatccaa cccttttcaa atgcttcttt
    17761 tgcaatatct ccaaaaacag gagaaaaatc ataaaaagca tttaaaatga tttttttact
    17821 ttcctcaaaa ctgaattttg cctctttgcc aatgggtgca taacgatcat aatctttaag
    17881 tttgttaaag cctaaaattt gtttttttct tttatagaaa ttagatacga ggtaaaaatg
    17941 tttttgcgtg gtttgaatca gcgaattaac actttgttgg gtgatttgat tttgcaagtg
    18001 ccttggagtt tctgcgcttt catatccgcg taatttgcag atattgttta attctgtttt
    18061 gatcatattg aaaataaaag tgagtaaatt taaattttta tcaagagctt tggtaaattt
    18121 tttagcggct ttttttctta tttttctgtc attattgtaa agcttgctta aaatttcttc
    18181 ctcgctaagc ttattgcctt cgaaaggaat ttttaatgca gtcatgcttt catcaaataa
    18241 tctactaaaa gcattagctc ctgtgtttga aagataaagc attatgcgtt cttctttttg
    18301 gcttagatta tagcgtttat tttgaagaag attttgcaag taaaaatcat agcctttgca
    18361 aaatttaatc aattctttag ttttttcttc actaagttca caaaattcta attcaaaaaa
    18421 taataaattt tcttctattt ttttacattc ttgttcatat ttagcataaa aagaaccctt
    18481 ggagctatcc ttagcaaagc ataaataagc ataagtcata atttttgaga gtattaaatg
    18541 taaatgttcg tattctttta aagcgtttag aaaatcatca gggtttaatt tatctaaagt
    18601 agtagaataa ttttttttga attctttaga ttgttgaata tagttttgcg ttgtgttttc
    18661 taattcatct tcgtttttaa acaatactcc caaatcccaa gttaacatat tttctcctta
    18721 gctttctaaa atcaattttt ttaaaacagc cattctgata gcaacgccat ttttaacttg
    18781 ttttaaaact aaagctcttt catcatccat cacttcatcg cttatatcga tatttctatg
    18841 tacagggcca ggatggagca agatgagttt tttatcttta atcaaatcaa gcttgataca
    18901 aaaatcattt gcataatctt ttaaagaacc ataaatgatt ttattatgtc tttctgtttg
    18961 tgttcttaag ctcattataa tatcggtttt tgagattaaa tcttcattta aagaataaga
    19021 tttttttaaa ggtgaatgag gcataaaatg gggcggtgcc acaaaggtga tatctaaacc
    19081 aaatcttgtt agaagctcag cgtttgaaga ggcaactctt gaatttttaa tatctcctac
    19141 gattaagatt tttctaccct tgatatcacc tttaaaatgt tcataaattg taaaaagatc
    19201 aagtagggct tgagtagggt gtgcatgttt gccatctcca ccatttacaa caggacaatg
    19261 catatgagaa gctaaaatat gaggtactcc tgaatttgca tgtcttacta tgatagcatt
    19321 aggactcata gcgtctaaat tagtcgctgt atcatagagt gtttcgcctt tactagagct
    19381 cgatcttgaa acatcaaggc gtaaaattct agctcctagt cttcttgcgg cactttcaaa
    19441 ggatgagagt gtacgcgtgg aattttcaaa gaatatcgtt gtaacacttt tgccttcgag
    19501 taaggttcta ggtttttcat ctaaaaaatt tcttgcttct tcaaaaagct ccattatttc
    19561 atcattagta aaatcttttg ttgtggtgag atgcctcatt gtatttacct tatatcgtaa
    19621 tttaactcat ctttagaaca aatagcacta aataaaacat ctgttgagct atttaatgcc
    19681 gtttcaacac tatcttgtac tacgcctatg ataaacccta ttgcaactac tttcatagcg
    19741 atatcatagt ctatgttaaa taaagagcaa gctaaaggga taagtaaaag cgaaccgccc
    19801 gctacgccac ttgcgccaca agctgcaaaa gtagcaataa tgcttaataa aaaggcttgc
    19861 aaaaaactta cttgtatgcc aacgctatgt gcggcgctaa ggcttagtat agctatggtt
    19921 actgctgcac ctgccatgtt tatggttgct ccaagaggga tggagatact ataaaattct
    19981 ttattgattc caagtttagc acaaagtgcc atatttacag gaatatttgc agctgagctt
    20041 cttgtaaaaa aagcaaaaaa agcgctgtgt cttaagcaga taaaaatcaa aggaaaagga
    20101 ttttttctag tataaatgaa aacaattaag gcattgatta caaaagcaac aaaaagcata
    20161 gtaagtacaa gcaatactaa gagttttgcg tagcttaaca atccttgcgc tcctgtttgt
    20221 gccacagaat tagccaccaa accaaaaatt ccaaaaggag cgagttttac tataaattta
    20281 acaattttta aaaccccttc attgatatct acaaaaattt gttttgcttc ttgcgagcaa
    20341 tttttcaaag ctataccacc gcctattgcc caagctaaaa ttcctaaata atttccactt
    20401 gaaagtgcat tgataggatt atctactata tttaaaagta aattcttaaa aatttcattt
    20461 aaatgcatag gagaagtatt ttctgctttt tgaactcctt ctaggactaa ttccacagga
    20521 aacataaaac ttgcaatcac tgcacaagct gctgctaaaa aagttcctac aatatataaa
    20581 atgacaatat ttcttatctt agaactactt tgagaaaaat ctctcgtaca aatcgaagtt
    20641 aaaatgagta taaagacaag aataggagct atagctttta aagcattggt aaataaaact
    20701 cccaataaat tgacaacttc agctatttcc ttagagctta ttcctacgag tatgcctaaa
    20761 attatacctg cgcagatttg aaggattaga ctacctttgg cgtagctttg aactagtttt
    20821 gagaacataa gaacctttat tattttgaaa tttgatgcaa tatatcggac ttgattttaa
    20881 cgaacttttg cttaatttta gtgaattttt taaagcatta agcttgaata aatttatttg
    20941 agttagaatt gtaactcatt ttttatgaaa ggacttttta tgtatctatt cacttcagaa
    21001 gtcgtaagcg caggtcatcc agataaatgc gctgatataa tcgctgatac aatagtggat
    21061 atactcttga aaaatgacaa aaattcaagg gtggcgagtg aggtttttgt cgcaggaaat
    21121 aaggttgtga taggaggaga agttaaatca aatcacaagc ttagtaaagc tgattacgat
    21181 aatttagtta aagatgtttt gaaaaatata ggctatgatg gagcaggata ttttagtaaa
    21241 gaacaatgtt tgcatcctga tgaagtcgat gttatggtat ttttaaatga gcaaagccct
    21301 gatattaatc aaggtgtaga tcaagaagat ggtgaaacag gtgctggaga tcaaggtatt
    21361 atgtttggtt ttgcaagttg tgaggctaaa gagtatatgc cagcagctat aagctacgca
    21421 agagcgcttt gtgataaggt ttatgcttat gcaaaagctc atccgcaaga gttgggtgta
    21481 gatattaaaa ctcaagtgac tattgattat ggtacaaaag ctaattttga aaattgtaaa
    21541 ccgcaaagta ttcatactat cgttgtttct gtaccttgcg ttgaaagtat gaaaatagag
    21601 gatttaagag ctttagtaaa taaattgatc ctagaaagtg atttaccaaa agaacttttt
    21661 aatcctgaaa aaactagaat tttgatcaat ccaacaggaa aatatgtcaa tcactcttct
    21721 ttacatgata gtggtttaac aggaagaaaa cttatagtgg atagttttgg aggatatgct
    21781 cctataggag ggggtgcgca atctagcaag gattatacca aggttgatag aagtggactt
    21841 tatgcgggca gatggcttgc taaaaatata gtcgcagcag gacttgctaa aaaatgtata
    21901 gttcaactca gttacgccat aggtgttgct aaacctactt ctgtaagtgt agattgttta
    21961 ggaaccaata caggggtaaa tgatgatgtt ttaagtgatt ttgtaatgaa aaatttctct
    22021 ttaaccccaa attggattcg tgataaattt ggtcttgata aacctagcaa agatactttt
    22081 ctttatgctg atgtagcagc tcgcggacaa gtaggacaaa aggattatcc ttgggaaaaa
    22141 cttgatgcta tagatcaatt taagacttta attaaataag ccttgttttt caaggcttat
    22201 catactttaa atttcatctt aatataaaac caatttaaaa ttcaaacttc atcaatagac
    22261 ttattgagat tgtaaaagaa tatataggca aaagtatcca cgatacaagg tatgatagtc
    22321 catttcttat gaatatgaaa aagacagaaa aagcttattt gtaatcgcag aaagaaaaac
    22381 agacaagcga ttgtttaaat atctaataag agattttaaa gatttaaagg ctttacaaaa
    22441 agcaaaggat aaagccgaag agttatttta tcttgatagt gagatggttg aaaactctaa
    22501 aaaaatgcaa gggatattaa aaggcttgat agataaaaat aattcttaag ccttaatatc
    22561 tatgcttttt ggtgcagagt ttaaagaaag aattttatta aattctcctg tatcatcatc
    22621 gctaaacttc ataccaaaaa gaatttctaa ttcatcgctt gtgccaaatt tattttccag
    22681 tagctttttt aaaagctcat tcattttatt atcatcttta taggtttcgc ttgaactttg
    22741 cgcttgtata ggtttaaatg gctttttttt gtcttcttct gaagtttctt tgttatttgt
    22801 attttttgta ggattgttta aattttcttt ttgttctagt attttttgtt taaaatcatc
    22861 aatgctcata tctgaattta ataaatcaaa aagcttaaaa atatctcctt taaaattcat
    22921 actattttca cttatgaatt tgtttaaatt atcaatttca ctttgactca tagttttatc
    22981 aaatccttgc attttgccta aaatacttgt ttgtccttcg ataaaatagt tttttgcttg
    23041 aaatccagta aagaaagtca taaaaatacc actttttgtt atagttttat cattattact
    23101 ataaggagta ggatctatta aagaatattt aaaaatatca cttttatcat caagtgagaa
    23161 aaaagtcatt atttttatat tatgggaagt cggagagtaa ttttgataat tagacataaa
    23221 atctttatac tctttatcat ttaaattata ttttttattt atctccaaag tattttgatt
    23281 aaattcgaaa ccttgtggta tttttactaa gtcttctttt gtaaaattga ttttattgtt
    23341 taactcatca tttaaaagtt gtgaaaatac tttataagca tttcctatac tttttgctat
    23401 atcaatatta atataacttg ataatagact ttttgtttga atattaacaa aattttctat
    23461 atctttagca taaatcttat aatcttttgg taatcctgcg gcttcattaa aatcgcttgt
    23521 aaaaaagcca ttctcatcta ctccataacc taaaacttta tttactgccc cagatttatc
    23581 gcttacaagg tttgaagttt catttacagt gttagatgat tttgtatttg gagtattatt
    23641 gctaaaagta tttgtataat tgtagcttga ataggaattt acaccattaa tcatctttgc
    23701 caccttataa ataaagtaaa tcggcaaaaa tgattttttc ttaagtaaaa attgtattta
    23761 atgaggaatt cctgctgtta atccaccatc aatcaaataa agtccaccag ttataaaact
    23821 tgcctttgga cttgctaaaa aataaatcag ctcggctact tcattggctt gtcctacttt
    23881 ttttaaagga tatttttctg cttcattttg ccaataaaaa tctgtatttc caccatgtgt
    23941 aatgttggca aagtcttgaa ataatctctc tgccatcggt gttttgatag ttcctgcaca
    24001 tacagcattt actctaattt ttggtgctaa atctaagc
//
LOCUS       DARAII010000013        23155 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.013, whole genome shotgun sequence.
ACCESSION   DARAII010000013 DARAII010000000
VERSION     DARAII010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23155)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23155)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23155
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.013"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(1..2947)
                     /locus_tag="SB143_000449"
                     /pseudo
     CDS             complement(1..2947)
                     /locus_tag="SB143_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822769.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
     gene            complement(2947..3495)
                     /locus_tag="SB143_000450"
     CDS             complement(2947..3495)
                     /locus_tag="SB143_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEF9749017.1"
                     /translation="MEFSKKKIVRLSLNLTLLGALFPCVLFSADLRQRNGNVIVSRTT
                     DLTQSSNKTDVINIKNPNQNGVSHNQFDEFSVQDGVIFNNSLKDGNSQIGGWVGKNPN
                     LKQNANTIINEISSKQASNINGAVEVFGKSANLIFANENGFSVNGAAFLNTKGVTLST
                     GKFNGDFTEVTSNGRVAIGEKG"
     gene            complement(3757..4848)
                     /gene="aroC"
                     /locus_tag="SB143_000451"
     CDS             complement(3757..4848)
                     /gene="aroC"
                     /locus_tag="SB143_000451"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEF9749018.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCVIDGMPAGVKFDEEFLQSELD
                     KRKGGSKFATPRKEGDRVQVLSGVFEGYTTGHPIAMVVFNENTHSKDYDNLKDLFRPA
                     HADFTYFHKYGIRDHRGGGRASARESVARVAAGAVAAMLLREFGICVRSGVFGVGNFI
                     SNLKEEELDFEFAKKSEIFCLDPKLESDFKNEILSARNSKDSVGASVYTRAKGMLVGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSQNNDALKGGEFLSNHSGGI
                     LGGISNGQDLILKTYFKPTPSIFLKQSSMDKFGNDLEFELKGRHDPCVGVRGSVVVSA
                     MVRLVLADCLLLHASANLNNLKNAYGIKK"
     gene            complement(4848..5522)
                     /locus_tag="SB143_000452"
     CDS             complement(4848..5522)
                     /locus_tag="SB143_000452"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEF9749019.1"
                     /translation="MKNIELLEQKLAYKFKDKDLLIHALTHKSFKKPYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSAAEENN
                     GGKEKPSILSDALEAIMGAIHLEAGFDFARNIALKLIEKNFPQIDAKNLIKDYKTKLQ
                     EITQAKLGQTPQYETVRAFGPDHLKQFEIVLFLNGQELARAIAGNKKEAQQMAAKITL
                     EKLGAL"
     gene            complement(5509..5949)
                     /gene="rnhA"
                     /locus_tag="SB143_000453"
     CDS             complement(5509..5949)
                     /gene="rnhA"
                     /locus_tag="SB143_000453"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEF9749020.1"
                     /translation="MRHIEIYTDGSCLKNPGFGGWAYILRYNQHQKEGFGAEANTTNN
                     RMELKAIIEALKALKEPCEISLFTDSNLMVQSINEWLEAWIKKDFKGKKNVDLWKEYI
                     DVAKPHKIKAYWIKAHNGHLENERCDTLAREAALKIARENDEKY"
     gene            complement(5936..6919)
                     /locus_tag="SB143_000454"
     CDS             complement(5936..6919)
                     /locus_tag="SB143_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749021.1"
                     /translation="MDFFFVEYRDPLVGLIILTVLIFVVAVANYIWKVFASKDEEQKL
                     EKFIKKFEMDNIHKDLLRNEGLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKSKDKQ
                     EREFIFFALAKVYFKAGFLERAKEVLLQALKIRPRNIQTLKLLKIVYLKLRKYKENLE
                     LLGCLFELGENVKEEKEFLKALDFLASSLSDEEKKEHILKLQTDNNPMLGRFVFEKYH
                     IFLNQDFSSICDLLYKENKAFNLQNKEYFEFFYALGLIEDEESKDVNFKNSNFKMLKI
                     LKENSFKARLEFSYRCTECKSVMPLFFYHCPVCYEFNTCQIIYEVKNNETY"
     gene            6989..8815
                     /locus_tag="SB143_000455"
     CDS             6989..8815
                     /locus_tag="SB143_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEF9749022.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCVCPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFTDAVEKIANLCNFTLSYTKEKNE
                     NKKELRTILPSLNAYFKSNLKHHKEALDYLYKRTLNDQDIAKFELGFAGSSEDSIRLF
                     HNEKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVAAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEMIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTENHLPLIRRYEAKVILCFDNDEAGLNAATRSAFLLSTHKIDGKVALLEGGKDPAE
                     LVANNQSAKLHTLLEKGMDLGEFYIRRILSSFSLNSALDKQKALENIQKYTFSLEPLV
                     ASSYVGLVSKLLGVDEKLIVLTSNRKPSKTINFNTSFQQTQNHNPKSHITELELLNYL
                     KNNPNMHELFIKISDIRCFKHKVLLEKILEHKSYEDSDIREFESKNFSKDLSQIEFLW
                     GICKVNLAFLNHINITNSYLALKKQIFTLIEKNFVLLSKNLNDHELVEFLKENLFLLK
                     NEKDEEKLEALFKNLHRFFSAKNLDIKILKNNSENDYNEEPF"
     gene            8910..9182
                     /locus_tag="SB143_000456"
     CDS             8910..9182
                     /locus_tag="SB143_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEF9749023.1"
                     /translation="MMPFSDEELINPVKASLDKSMPMLERDGGGLEFLGIKNGVVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIVNLNGGAEDFAKL"
     gene            9169..9726
                     /locus_tag="SB143_000457"
     CDS             9169..9726
                     /locus_tag="SB143_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEF9749024.1"
                     /translation="MQNYKKLGIEHFLRKDFKTAKIYFSLAYEKRKNKRLFHFITLCD
                     LALKSPKEALLLFEFYLEHYQIKNIDKDLEEILSTIELKNEKNTDETENEIQEAHTLN
                     YKDFLKSEEQIGFKKSFENIIHSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIESVM
                     PHFWANERFIKLQEKLIGFKSEIKA"
     gene            9710..10993
                     /locus_tag="SB143_000458"
     CDS             9710..10993
                     /locus_tag="SB143_000458"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEF9749025.1"
                     /translation="MKLKLDQSFITDNTLECEKDCYFLKTAQNMNFASDALEKGAKII
                     DVEECKKLLKIDENIKIIGITGTNGKTTTAAAIYSILLDLGFKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQLATQKKCDFFIMEVSSHALVQNRIEGLKFAAKIFTNITQ
                     DHLDFHGNFENYKAAKELFFTDESLKFINKDTLMIKFNVRNAFTYGIENPSLYQVKAY
                     SLEDGISAIVALKDQSFHIDSPLLGLFNLYNLLAASACVNELVKPNLKDLEKAISGFG
                     GVCGRVEQVANDVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKDIMNEILSGFQNPDKALMIEDRKEAINKALKLKEKDDL
                     VVILGKGDENTQEIKGIKHPFSDKAVVNEILKNQG"
     gene            10997..11302
                     /locus_tag="SB143_000459"
     CDS             10997..11302
                     /locus_tag="SB143_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEF9749026.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDGSLLEDKESLQILLISAINDVLAMVAQNRSSLASDVLGGFGKL"
     gene            11299..12390
                     /locus_tag="SB143_000460"
     CDS             11299..12390
                     /locus_tag="SB143_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEF9749027.1"
                     /translation="MKFLFFLVTFLISLSAIERPKFEDFAAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNVKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWIGI
                     WDPNRAYIGHIKYLAQNIDEKDQLDFSTKVGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFAVRENKIYVNNVRKSGQFLINDEIISVDGTLVKDIRKLNEKI
                     LFADRGSTLYFQVLRDNVDLNISTEVFAKDLSKFNLPSNKPKPKPTNFRSNIGLSVNS
                     SLIVTKVDAGSKAALAGFMVGDKILRANNVTLKDFKELQTLLGTGNDFNILIERKSDK
                     LPLLGLNNDLGGVHSGGDGKFQFFIRLVK"
     gene            12387..13226
                     /locus_tag="SB143_000461"
     CDS             12387..13226
                     /locus_tag="SB143_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEF9749028.1"
                     /translation="MKELFIKHLENHLPKVQSFHPFFNEALAKMLKAGGKHFRAQLLL
                     GVVQNKAPHLIPNALNAALALEFIHTYSLIHDDLPAMDNADLRRGTPTLHKSYDETTA
                     ILVGDALNTEAFLLLSNLNLKESIKINLIRTLAFNAGINGMILGQAIDCYFEDKKLNL
                     EELEFLHTHKTAKLIAAALKMGCEICELDEKESEKIYQIGLKLGLIFQINDDIIDETM
                     SEEESGKPSKHDEHKNSFVNLLGLEKAIQSKENLINECKNDLGDLDANLAHMIKSLII
                     KYL"
     gene            13236..15134
                     /gene="tkt"
                     /locus_tag="SB143_000462"
     CDS             13236..15134
                     /gene="tkt"
                     /locus_tag="SB143_000462"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEF9749029.1"
                     /translation="MDLSILQEQANTLRFLSADMVQKANSGHPGAPLGMADILTVLSY
                     HLSHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLDDIKNFRQLHSKTPGHP
                     EISTQGVEIATGPLGQGIANAVGFAMAAKKAQNLLGKELINHKVYCLCGDGDLQEGIS
                     YETCSLAGLHKLDNLIIIYDSNEISIEGDVSLAFNEDVKMRFESQGFEVLSIDGHDYE
                     AIDKALKQAKEANKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEKAGFDP
                     NLNFYIPKAAKIRFESAVELGDLEEAKWKDKLEKSEKKELLEKLLNPDFSKINYPDFK
                     GKDLATRDSNGEILNALAKDLEGFLGGSADLAPSNKTELYGMGDFAEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKVKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     VFGDVKNGAYLLKESKDAKFTLLASGSEVSLCLESANELEKQGFACNVISMPCFELFE
                     KQDKAYKDRLLQGEVIGVEAAHSNELYKFCDRVYGIESFGESGKDKDVFEHFGFSVPQ
                     ILNFILDK"
     gene            15136..16251
                     /locus_tag="SB143_000463"
     CDS             15136..16251
                     /locus_tag="SB143_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749030.1"
                     /translation="MEANFKFQKEENKVFIFGIWDKTSVSKIKIKDLLSQISQTNCIF
                     DFSQLNEIDMAGVRFFLALEHDLKKNDILILKQGLNTRFKSLFELCEKNYQRINEKQE
                     KKFNFTDFFISLGILSFDLLKILQKFINFTGAFFTSLFLCIKNPKNFRFISFLYHIEN
                     SAFKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLVGISATRELAPLIAAIVI
                     AGRSASSYTAQIGVMKITDEINAMNTMGFRSFEFIIIPRVMALVIAMPLIVALSDAIS
                     ILGGMVVAKINLDISFGEFLRRFREAVEMKHIIIGLAKAPIFGFLIGLIACFRGFEVK
                     NTTQSIGIYTTKSVVNAIFWVIAFDALFSVVLTIMEV"
     gene            16252..16974
                     /locus_tag="SB143_000464"
     CDS             16252..16974
                     /locus_tag="SB143_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEF9749031.1"
                     /translation="MIIKAQNIITRFGNKVVHDGVSFEINKNEIFGILGGSGNGKSVL
                     LKQMLMLEHFDEGEYEILGFKLKNISEEDALALRKKWGVVFQFSALFSFFSVYENIAI
                     PLKEYTNLDSIAIKELVLMKLKMVGLNEAVLKQLPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLILELKQSFDLNIVLVTHDKESMKNLLERFIILEDKKV
                     AFCGNYEELRVQNERLFKRFME"
     gene            16977..17873
                     /locus_tag="SB143_000465"
     CDS             16977..17873
                     /locus_tag="SB143_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEF9749032.1"
                     /translation="MENKANYFFVGLFVFGVFFASIGFMLWLGGYSKEESFEYYEIHT
                     QESVAGLGIKAPVRLLGVEIGNVENISIYDKENLGVNILIKIKKGTPIKEDTFATLQF
                     QGITGLKFVQLQGGSKNSPKLQVKGKEEFPVIQFKEGFFAAIDRQSEHIFSLIKRADD
                     KSKELFSDKNIKNLEILLDNLAQLSTTLNKDSKTLNHNIANTSLKLGEMAENVSLSAK
                     GFNASLKDIQEGALALSSFAKKANVKLDSYDDLRLSLAENLELLKKVLIESNILIQNL
                     QKSPSDLIFKETKPKLGPGEKQ"
     gene            17870..18472
                     /locus_tag="SB143_000466"
     CDS             17870..18472
                     /locus_tag="SB143_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HEF9749033.1"
                     /translation="MKKFIYITILAFIFNGCSIPTSTLDKTQSFILKNDELPLQANFI
                     KSDKILKIQNASLPLYLHSRSIIYVQKGISKAYAYHFWADLPNNLYQSLLLSKFEQSQ
                     IFKALLSQGSSVGSDYILESRIDSFEQVVDENENYVSISISINFIDAKESKIIAHRLF
                     SIKERVKKIDIFDVYQSFEKALNSLGNEIVLWINATLDEK"
     gene            18524..19024
                     /locus_tag="SB143_000467"
     CDS             18524..19024
                     /locus_tag="SB143_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749034.1"
                     /translation="MKNELDVFKKHLGEIQGVSEFKATQICSQINDANDFIGALQILD
                     LTLKKIEKSITERLDEQNDDLQKRTLDATSSQLIQNCSFMGTALFGNIFNVYVGQKLF
                     EFEISNPLLVLEKAGYEGVLAYIQDKRDEIKDILCKLSSAITMGISMDNMNFSDSATN
                     FKNLFR"
     gene            complement(19344..20102)
                     /gene="map"
                     /locus_tag="SB143_000468"
     CDS             complement(19344..20102)
                     /gene="map"
                     /locus_tag="SB143_000468"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEF9749035.1"
                     /translation="MIELKKPAEIEKLRVANQIVAKTLDFLENEIKAGMSLKQIDKMA
                     EDFILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDEKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGKISSTDEALISCAKDALYHAIDIIREGMRFKELSAALGEFIDLRGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHF
                     NGKWGAGSVDELNSAHYEHCVAIINGRAEILSSL"
     gene            complement(20112..20855)
                     /locus_tag="SB143_000469"
     CDS             complement(20112..20855)
                     /locus_tag="SB143_000469"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEF9749036.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIVKFCLEALDFFSKFNIDMLIIACNTASAYALDALRLKADFPIYGVIDAGVEATKK
                     ALLDKNKKILVIATKATIQSKEYQNRLQKQGFNNVDALATGLFVPMVEEGIFEGELLQ
                     SAMRYYFKGIETPDALILACTHFPLLANSLSVYFGSKTKLIHSGDAIVEFLKQRQKLL
                     LKEEKAKLHFYASSDVKSLENTAKIWLNL"
     gene            complement(20857..21321)
                     /locus_tag="SB143_000470"
     CDS             complement(20857..21321)
                     /locus_tag="SB143_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEF9749037.1"
                     /translation="MRFVIFFLVVIAFYIGGCSLAQNASHTPTNYNVDKETRLRMIAN
                     EWKKTPYVLGGTTKKGADCSGFAQSTLAQFNTRIPRTTTKQLRSGIKVSKSKLKTGDL
                     VFFKTGRGPNGMHVGIYMSKGKFIHLSTKGGVREVDLNSSYWKNRYIGARRY"
     gene            complement(21330..22499)
                     /gene="nhaA"
                     /locus_tag="SB143_000471"
     CDS             complement(21330..22499)
                     /gene="nhaA"
                     /locus_tag="SB143_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEF9749038.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     GALGGILIPALIFAIVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSVAAFVVVGIAIFMMLILNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRP"
     gene            complement(22496..>23155)
                     /locus_tag="SB143_000472"
     CDS             complement(22496..>23155)
                     /locus_tag="SB143_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEF9749039.1"
                     /translation="LGAIIIIALFYTDQLSTLAIIVCLLCIFILFVLNYFHVTHLPLY
                     VLVGVVLWIAMLKSGVHATLAGVIIALFIPLDTKNKKPYLHEVHKDLNPWVVYFILPL
                     FAFANAGIDLRDMHFESIVSPVSMGIMLGLFLGKQLGVFGFCYLAIKLKLAKLPENIK
                     YGKFYGICILTGIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIV
                     K"
BASE COUNT         8193 a         3762 c         3477 g         7723 t
ORIGIN      
        1 tcttgctaag ttcgtgtgca tctttaatat taacattgtt agcattgata tctattttag
       61 aatcagcatt gatattgcta gctataatat ttacatcttg attggaaaca attcctacat
      121 ttgctccttt gatattggtg cttaaaaccc catctatact cgttgtagta ttggattttt
      181 gactatctgt attaatttgc tcaaatgaag atgatttaga ataatcgttt ttgatattta
      241 catcaccctt ttgagatata agaacaattt tagaatcatt cgcactagta gaaatatcac
      301 tatttttgat atttaaatca tttaccgaat caatattaac aacattattt gctttaatct
      361 ctctttttta attgaattat aagagccttt ttcatctata cctaaaacag tgtctatatt
      421 gacattattg gcacttaaat ttatattttg cgcatttaaa ttagaacttt gcaaattaat
      481 ctcgttgcca gcattgatat taatctgacc ctctgaagct atgtcgccta acaaagaatt
      541 aaatgattgc gtattaatat ctacgcctgt ttttcctgta agatttgatt ttatttcatt
      601 atttccaatt gtctctttag aaagatacaa cataggagcc atgatatttt taccgttttg
      661 tttgattgtt acatataaaa tcatatcttg atcaacagct tgatttttag ccaaaccttg
      721 acccaaattt aagccatttt cattggcata ttttgctcca ttttcaagta attttttgat
      781 ttcttcttcg ctcaatttag tattggattg tagtgcgttt gcatacattg cgttaataag
      841 ctgattttca aaaaaggatc tcctataact ataaattcgt tgaagttttt atttttaaat
      901 tgatttaaaa tacttaaaaa tccaaaatac ttgctttcat ctatgataga agtatttgta
      961 gtgtattcat aagtaatatt atcatttgtt ttattttcaa gagtaaataa gcctgaattg
     1021 ataagatcag gtatagaatt taaaattaaa tcttgactat ttgtcgcttt ttttaaatcc
     1081 gaatcaagta aggcaaaatt tttatccaaa gaactgacta aatcttgatt gtattcctta
     1141 gcattaagat ctaatttacc ctttgaagca ataacagcct cggattttgc tttaaaaaca
     1201 atctttgcat caagattcca ctctttttga tcaggaacaa atctttttga agcataatca
     1261 ctaccaaata ataaagaaaa atattggttt aaagctgaat ttttagctgc tgcatcttta
     1321 agcgcattcc acgctgattc tctttgatga ttttttgctt gggtggtaga aaaatatttc
     1381 aaagcatcaa gcaagctttt atgatctaca aaataataag ttgaatttgt attccaagaa
     1441 ccaagatatt ctttagcaaa aaatccatta actctaattt gctctaaaat ttcacctaca
     1501 gaaatttctt tacttaaaga cttattgtct atatttccaa aagatacgat attgccttga
     1561 gcaagaattt ttccgctgtt gttgatttgt ctagcattat cttgtgattg ggtattgata
     1621 tttatatctt tacctgcttg gatagaagct tgcttgctgt ctaataaatt attatatttt
     1681 acaatacccg taacacctac ttccatattc catcgtttaa aagcagtatc accgtaccct
     1741 acttgaccaa aaccttgaga atactcggtc gaagtctcaa gcatgcctgt taaatttgca
     1801 ttattattta aaatatttgc ctcgatattg atactttatc tgcaaaaatt aaagcattat
     1861 tatgaatcgt atgggcgttt aaatacaaat tatttaagct attaaaagtg gaattatttg
     1921 taagggttgt agcttgggct ctaagatcac catttgaaaa taaataagca tcatttacaa
     1981 gattttcatc tgcatgaaga tttaattctt ttccactagc aacaaggttt ttaacataaa
     2041 tatttttcgc atcaagctct attgaagaag tattttcgag ttttgaattg atatttaaat
     2101 cattcaagct ttttatatga agcaaatttt gtgcgtataa atttccatga tttaaagtta
     2161 aatctttatt agcttgtatt tgaatatcat tttggcttaa aattttgcca ttattaataa
     2221 aagcatcatc attaagcatt aagcttatat ctttatttgc tgaaatttct ccttgattgt
     2281 caaaagaatt tgtacccact ttaatatcat ttaaagcatt gataaatcca aaattgctag
     2341 ttttatctag ggtatttaaa gttaaactgt ctgcaaaaat acttgaattt tcttgattta
     2401 tcttaaaaat atcttttgtt tcttggctca aatttgtttg ctttgcattt tcaaaattat
     2461 tggcattgat ttgaatttgc ttgcctttat aaagtccttc atttgtaact tttccacttg
     2521 cttttaaatc aattgtatct gcattgatta aagaggtttt aatatcttta gcgtctatct
     2581 taacacttcc atttgtattt acatctatag cttgaaattc agccttatct tttactttta
     2641 ctataacatc ttcaattccg cgtattactc cactatgtct tacaccaaca ccctcttctg
     2701 tgctaataag agtaactgta tttgcataca tagatcctaa atatttccca tcaataccat
     2761 aatcaatttt ttcatctttt tgttttgaag caataatttt tggagcattt ggagtactta
     2821 aatcgacctt attaagccca gctataaaat taatatcgga taaattttta ccactttgat
     2881 agtgggcaat actacctgca aggtcaatcc cacggctgat tacattaaaa taatccccat
     2941 caaccattac cccttttctc caatggctac cctaccattg cttgttactt ctgtaaaatc
     3001 tccattgaat ttgcctgtgc taagtgtaac tcctttagta tttaaaaaag ccgctccatt
     3061 tacactaaaa ccattttcat tagcaaaaat taaattagca ctttttccaa atacctcaac
     3121 agcgccattg atattagaag cttgcttact tgaaatttca tttataatag tattggcatt
     3181 ttgttttaaa tttggatttt tccctaccca tcctccaatt tgagaatttc cgtcttttaa
     3241 actattatta aaaattactc catcttggac actgaattca tcaaattgat tgtgtgatac
     3301 tccattttga tttgggtttt tgatattaat tacatcagtt ttattgcttg attgcgtaag
     3361 atctgttgtt cttgaaacaa taacattacc atttctttga cgcaagtctg ctgagaacaa
     3421 tacgcaagga aataaagcac caaggagtgt taaattcaac gataaacgaa caattttctt
     3481 tttactaaat tccatcaatc cctccttgta atatctttaa ccattttaat attaaaatag
     3541 taatttttat caatattttt aattaatact aaaaaaatcc taaataaaaa ttcctttttt
     3601 acacacttaa aataaaaata atattaattt atttttttaa acttatcaaa atgtataaaa
     3661 aatataaaga ttaagtgtta aaaaatttat aaaagagacg atatggagtt aaatcttttc
     3721 aaaatattgc aaattaaagc ccaaaaatgg gctttatcat ttttttatcc cataagcatt
     3781 ttttaaattg tttaaattag cacttgcatg aagcaataaa caatcagcca aaaccaaacg
     3841 caccatagca ctcactacta cactacctct aacacctaca caaggatcat gtctgccttt
     3901 gagttcaaat tctaaatcat ttccaaattt atccatactg ctttgcttta aaaaaataga
     3961 aggagtaggt ttaaaataag tctttaaaat aagatcttgt ccatttgaaa tacctcctaa
     4021 aatccctccg ctgtgattac ttaaaaattc accccctttt aaagcatcat tattttgcga
     4081 gcctcgcatt ttactcgcat taatcccctc gcctatctca acagctttta cagcattaat
     4141 ccccattaag gcatgagcta atttagaatc taatttatca taaagcactt ctccaagtcc
     4201 tacaagcatt cccttagctc tagtataaac agaagcaccc acactatctt ttgagtttct
     4261 agcgcttaaa atttcatttt taaagtcact ttctagtttt ggatcaaggc aaaaaatttc
     4321 acttttctta gcaaattcaa aatccaattc ttcctctttt aaatttgaaa taaaatttcc
     4381 tactccaaaa accccacttc gaacacaaat accaaattca cgcaaaagca tagctgcaac
     4441 agcacccgca gccactctag caacactttc tctagcacta gctcttccgc ctcctctgtg
     4501 atctcttatg ccgtatttat gaaaataagt aaaatcagca tgggcaggac gaaataaatc
     4561 ttttaaatta tcataatcct tagaatgtgt gttttcgtta aacacaacca tagcaatagg
     4621 atgacccgtg gtataacctt caaatacccc gcttaaaacc tgcaccctat cgccttcttt
     4681 tcttggagtt gcaaatttgc tcccaccctt gcgtttatca agttcgcttt gtaaaaactc
     4741 ttcatcaaat ttaacccctg caggcattcc atcaatcacg caacccactg ccactccgtg
     4801 ggattctcca aaacttgtaa attttaatct tgtaccaaaa gtattcacta taaagctcct
     4861 aatttttcaa gtgtaatttt tgctgccatt tgctgtgctt cttttttatt tcccgcaatg
     4921 gctcttgcaa gctcttgtcc attaaggaat aaaacgattt caaattgttt taaatgatca
     4981 ggtccaaaag cacgcacggt ttcgtattgt ggggtttgtc ctaattttgc ttgtgtaatt
     5041 tcttgcagtt ttgttttata atctttaatg agattttttg catcaatttg tgggaagttt
     5101 ttttctataa gctttaaagc gatatttctt gcaaaatcaa atcccgcttc taaatgtata
     5161 gcccccataa tcgcttctaa ggcatcagaa agtatagaag gcttttcttt acctccattg
     5221 ttttcttcag ccgcgctcat aaaaataaaa tcgcccaaat ttaaactatt tgcgatcttt
     5281 gcaaaagatt tttcattgac caaagccgct cttaattttg acaaatcccc ctcagcgtct
     5341 ttagcaaatt tatgaaaaag atattcaccc acaactaaat caagcaccgc atcgcctaag
     5401 aattccaaac gctcattatt gtaaggtttt ttaaaacttt tatgagttag agcatggatt
     5461 aaaagatctt tatctttgaa cttataggct aatttttgtt ctaataattc aatatttttc
     5521 atcattttcc cttgcaattt ttaaagcagc ttcgcgtgct aaagtatcac acctttcatt
     5581 ttctaaatgc ccattatgtg cttttatcca ataagctttt atcttatggg gttttgccac
     5641 atcgatatat tctttccata aatctacatt ttttttaccc ttgaaatctt tttttatcca
     5701 agcttctagc cattcattaa tactttgaac catcaaatta gagtctgtaa aaagtgaaat
     5761 ttcacaaggt tcttttaagg cttttaaagc ttcgataatc gcttttaatt ccattctatt
     5821 gtttgtagta ttagcttctg ctccaaaacc ttctttttga tgttgattat agcgtaagat
     5881 ataagcccat cctccaaaac ctggattttt aaggcaagaa ccatcagtat aaatttcaat
     5941 atgtctcatt atttttcact tcataaataa tttgacaagt attaaattca taacaaacag
     6001 ggcaatgata aaaaaacaaa ggcattacgc ttttgcattc tgtgcaacga tatgaaaatt
     6061 caagccttgc tttaaaggaa ttttctttta aaatttttag cattttaaaa ttagaatttt
     6121 taaaatttac atctttagac tcttcatcct ctatcaaacc caaggcataa aaaaattcaa
     6181 aatattcttt attttgtaga ttaaaagctt tattttcttt ataaagcaaa tcacaaatac
     6241 ttgaaaaatc ttgatttaaa aaaatatgat atttttcaaa aacaaagcgt cctagcatag
     6301 gattattgtc tgtttgtagt tttaaaatat gctctttttt ttcttcatca cttaaactag
     6361 aagcaagaaa atccaaagct tttaaaaatt ctttttcttc ttttacattt tctccaagct
     6421 caaacaaaca acccaaaagc tctaaatttt ccttatattt tcttaattta agataaacaa
     6481 tttttaaaag ctttagggtt tgtatatttc tgggtcgaat ttttaaagct tgcaataaaa
     6541 cttcctttgc gcgctctaaa aaccctgctt taaaatatac ttttgccaat gcaaaaaaga
     6601 taaattcacg ctcttgctta tccttacttt tttcaagggc gataagataa atttgcgtgg
     6661 ctttttcaaa ttcaccactt ttggtaaaaa tttcggccaa aaaactcaaa tttccaaaac
     6721 tcaaaccctc atttcttaac aaatctttgt ggatattatc catctcaaat ttcttaataa
     6781 atttttcaag cttttgttct tcatctttgc tcgcaaatac tttccaaata taatttgcca
     6841 cagctacaac gaagattaaa acagttaaaa ttataagtcc cactaaggga tctctgtatt
     6901 ctacgaagaa aaaatccatc atcctgctct aaaaatttta tgccaaatta tagctaaatc
     6961 tttgtataat tttatttaag gttttaaaat gataactaaa gaaagtatag aaaatttatc
     7021 ccaaagactt aatattgttg atattattga aaattatata gaagtaaaaa aacaaggttc
     7081 aagctttgtt tgcgtgtgtc cttttcacgc ggataaaaat ccttctatgc atataaatcc
     7141 cacaaaagga ttttatcatt gttttgcgtg taaagcaggc ggagatgctt ttaaatttgt
     7201 aatggattac gaaaaattaa gctttactga tgcggttgaa aaaattgcaa atctttgtaa
     7261 ttttactcta agttacacca aagaaaaaaa tgaaaataaa aaagaattaa gaactatact
     7321 gcctagctta aatgcttatt ttaaatccaa tctcaaacac cataaagaag ctttggatta
     7381 tctgtataaa agaacgctaa atgatcaaga tatagccaaa tttgaattag gttttgcagg
     7441 ctcaagcgaa gacagcataa gattgtttca taacgaaaaa atccctttag aagatgctat
     7501 gagtgtgggt gctttaaaaa aggatgaaaa taatgaattt tatgcaagtt ttatatggcg
     7561 tatcactttt ccaatttatg atcataaaga cttattggta ggttttgggg gacgcacttt
     7621 aaatcctaat gttgcagcaa aatatgtgaa ttctcctcaa aatatattat ttgataaaag
     7681 tagaattttt tatgctttta atatagctaa agaaaatata gccaaaaaaa aagaaatgat
     7741 agtatgtgaa ggctatatgg atgctatagc ttttcataaa gcaggtttta acaatgctgt
     7801 agcagtgctt ggaacagcat taactgaaaa tcatctgcct ttaatccgcc gttatgaagc
     7861 taaagtgatt ttatgttttg ataatgatga agcgggatta aatgcggcca ctcgttcagc
     7921 ctttttactt agtactcata aaatagatgg taaagtagcc cttttagaag gcggaaaaga
     7981 tcctgccgaa cttgttgcta ataatcaaag tgcgaaactt cacaccctac ttgaaaaagg
     8041 gatggattta ggggagtttt acattagacg catactttca agcttttctt taaattccgc
     8101 cctagataaa caaaaagctc ttgaaaatat acaaaaatac acctttagcc ttgaaccctt
     8161 agtagctagt tcttatgtag gtttggtttc aaaactttta ggagtagatg aaaaactcat
     8221 cgttcttact tcaaatcgaa aaccaagtaa aactatcaat tttaacacct ctttccaaca
     8281 aacgcaaaat cataatccta aatcccacat caccgagctt gaactcttaa attatttaaa
     8341 aaacaatcct aacatgcacg agctttttat aaaaattagc gatattagat gttttaaaca
     8401 taaagtatta ttagaaaaaa ttttagaaca caaaagctat gaagatagtg atataagaga
     8461 atttgagagt aaaaatttta gtaaagattt aagtcaaatt gagtttttat ggggaatttg
     8521 taaggttaat ttagcctttt taaatcatat taatatcaca aattcttatc ttgctttaaa
     8581 aaaacaaatt tttaccctta tagaaaaaaa ttttgtcctt cttagtaaaa atttaaacga
     8641 tcatgaactt gtagaatttt taaaagagaa tttgttttta ctgaaaaatg aaaaagatga
     8701 agagaaacta gaagctttat ttaaaaattt gcatagattt ttttctgcta aaaatttgga
     8761 tattaaaatt ttaaaaaata attctgaaaa tgattacaat gaagaaccct tttaagcttc
     8821 atttagaaaa ataacgaaaa aactatccga tttacctttt tttaaacaca atcacgctaa
     8881 agtatagaaa aatttattaa ggatatatta tgatgccttt tagcgatgaa gagcttataa
     8941 atcctgtaaa agcaagttta gataaaagta tgcctatgtt agaacgcgat ggaggcggtc
     9001 ttgaattttt agggattaaa aatggtgtgg tttatgttca tttaattggg gcttgcaaag
     9061 gatgcgcttc aagtggaacg acattaaaat acggacttga aagacaactt aaaatcgata
     9121 tacatccaga aattactata gttaatctaa acggtggagc tgaagatttt gcaaaattat
     9181 aaaaaacttg gaatcgagca ttttttacgc aaagacttta aaacagcaaa aatatatttt
     9241 tctttagctt atgaaaaacg caaaaacaaa cgcttgtttc attttatcac tctttgtgat
     9301 ctagctttaa aatctccaaa agaagcgtta ttactttttg aattttattt agaacattat
     9361 caaattaaaa atatcgataa agatttagaa gaaattttaa gcactataga gcttaaaaat
     9421 gaaaaaaata ccgatgaaac agaaaatgaa attcaagaag ctcatacttt aaactacaaa
     9481 gattttctaa aaagtgaaga gcaaatcggc tttaaaaaga gttttgaaaa tattatacat
     9541 agcacaaaat tagtcattga taaccgtgat gattttttag attttttaga aaaattactt
     9601 gataatggct ataaagatat gactttaaac tatatagaaa gcgttatgcc gcacttttgg
     9661 gcaaacgaac gctttataaa actccaagaa aaacttatag gatttaaaag tgaaattaaa
     9721 gcttgatcag tcttttatta ccgacaatac cttagaatgc gaaaaagatt gctatttttt
     9781 aaaaactgca caaaatatga attttgctag tgatgcctta gaaaaaggtg caaaaatcat
     9841 tgatgtagaa gaatgcaaaa aacttttaaa aatcgatgaa aatatcaaaa tcataggaat
     9901 tacaggaacc aatggcaaaa ccaccaccgc agcggctatt tattcgattt tacttgactt
     9961 aggttttaaa tgtggacttt gtggcactcg tggagctttt atcaacgatg agcaaattga
    10021 tgaaaagtct ttaaccactt cgcctatttt aaaaacttta gaatacttac aacttgccac
    10081 acaaaaaaaa tgtgattttt ttattatgga agttagctcg catgctttgg tgcaaaatcg
    10141 catcgaaggc ttgaaatttg cagccaaaat ttttactaac attactcaag atcatttgga
    10201 ttttcatggc aattttgaaa actataaagc agcaaaagag ctctttttta ccgatgagag
    10261 tttaaaattt atcaacaaag atactttaat gattaaattt aatgtgcgca atgcttttac
    10321 ttatggcata gaaaatcctt ctttgtatca agttaaagct tattctttag aagatggtat
    10381 cagtgctatt gtagcattaa aagatcaaag ttttcatatt gactcgcccc tactaggact
    10441 tttcaatctt tataatcttc tagccgctag tgcttgtgtt aatgaacttg taaagccgaa
    10501 tttaaaagac ttagaaaaag ctatcagtgg ctttggcggg gtttgtggta gggttgagca
    10561 agtggctaat gacgtaatcg tggattttgc tcacactcct gatggcattg aaaaagtact
    10621 tgatacactc aaaaataaaa aactcatagt agtttttgga gcaggtggag atagagataa
    10681 aaccaaacga cctttaatgg gaaaaatcgt tgagcatttt gcaaaaatag ccattatcac
    10741 aagtgataac ccgcgtagcg aagaacctaa agatatcatg aatgaaattc tatcaggctt
    10801 tcaaaaccct gataaagctt tgatgataga agatagaaaa gaagctataa ataaagcttt
    10861 aaaacttaaa gaaaaagacg atttagtagt tattttaggc aagggtgatg aaaataccca
    10921 agaaatcaaa gggataaaac acccctttag cgacaaagcg gttgtgaatg aaattttaaa
    10981 aaatcaagga taataaatgt ttgaaaatat ggatttttct aagatgggag aacttttaaa
    11041 tcaagttcaa gaaaaagcaa aaaatataga attagagtta gccaatcgag aatttagtgc
    11101 taaaagtggg gcaggacttg tgaaagtcag tgctaatggc aagggtgaga ttatcgatgt
    11161 tagcattgat ggttctttac ttgaagataa agaatcttta caaattttac tcatttctgc
    11221 tataaatgat gttttagcta tggtagcaca aaatcgatca agcttagcca gtgatgtttt
    11281 aggaggattt gggaaattat gaaatttttg ttttttttag taaccttttt aatatcccta
    11341 agtgcaatcg agcgtcctaa atttgaagat tttgctgcag gctacgaaag aaataaagcc
    11401 agtatgctta attatgaagg aatgcctgct tttgccttga gtgaaaattt acttgcggtt
    11461 ttaaaacaac ctaatgtcaa actcaataaa tatgtaaaat atgatccatt tttaaatctt
    11521 tatcttgtaa gaactgattt tagcttaatc cctacaccta tgggagatga agaaaaactt
    11581 acacgcaatg attggatagg aatttgggat cctaatagag cttatatagg tcacattaaa
    11641 tatcttgcgc aaaatattga tgaaaaagat cagcttgatt tttctaccaa agtggggctt
    11701 ttaggcactc cttgctgcga aatgatggga attgctctta ataatagctc ctttatagga
    11761 aatcgttact taaagcattt tatgaaatat aacgatgtat attggggcga tataggggtt
    11821 gattttgcgg tgcgtgaaaa taaaatttat gtgaataatg ttcgaaaaag tgggcaattt
    11881 ctaatcaacg atgaaatcat aagcgtagat ggaacactag ttaaagatat aagaaagcta
    11941 aatgaaaaaa ttctctttgc agatcgtgga agcacacttt attttcaagt attgcgagat
    12001 aatgtggatt taaatatttc tactgaagtt tttgccaaag atttaagcaa atttaatctc
    12061 ccaagcaata aaccaaaacc aaaaccaacc aattttagaa gcaatatagg tctaagtgta
    12121 aattcaagtc ttatagttac aaaagtagac gcaggctcta aagctgcttt agcaggattt
    12181 atggtagggg ataaaatttt gcgcgcaaac aatgtgacac taaaagattt taaagaactt
    12241 caaaccctac ttggtacagg aaatgatttt aatattttaa tcgaacgcaa aagtgataaa
    12301 cttcctttat tgggattaaa caatgattta ggaggagttc attcaggtgg agatggaaaa
    12361 tttcaatttt tcataaggct tgtaaagtga aagaactctt tatcaaacat ttagaaaatc
    12421 atctaccaaa agttcaaagc ttccatcctt tttttaatga agctttggca aagatgctaa
    12481 aagcaggtgg aaaacacttt cgtgctcaat tactcttagg agttgttcaa aataaagcac
    12541 ctcatcttat ccccaatgcc ctaaacgcgg ctttggcctt agaatttatc catacttact
    12601 cgctcataca cgatgattta cctgctatgg ataatgcaga tttaagacgc ggaacgccta
    12661 ctttgcataa aagctatgat gaaactacag ctattttagt aggcgatgct ttaaataccg
    12721 aagctttttt acttctatct aatttaaatt taaaagaaag cattaaaatt aatctgatta
    12781 gaactctagc ttttaatgca ggaatcaatg gtatgatttt gggtcaggct attgattgtt
    12841 attttgaaga taaaaaatta aatttagaag aacttgagtt tttacacaca cataaaaccg
    12901 caaaacttat agcagcggct ttaaaaatgg gctgcgaaat ttgcgaactc gatgaaaaag
    12961 aaagcgaaaa aatttatcaa ataggtctaa aacttggact tatttttcaa atcaatgatg
    13021 atatcatcga tgaaacaatg agcgaagaag aaagtggaaa gccaagcaaa catgatgagc
    13081 ataaaaattc ttttgtgaat ttattaggac ttgaaaaggc tattcaaagt aaggaaaatt
    13141 tgattaatga gtgtaaaaat gatcttggtg atcttgatgc taatttagca cacatgatta
    13201 aaagtttaat aattaaatat ttataaaggt tacaaatgga tctatcgata ttacaagaac
    13261 aagcaaatac tttaagattt ttaagtgccg atatggtgca aaaggctaat tcaggccacc
    13321 caggtgcacc cttgggaatg gctgatattt taacggtttt aagttatcat ctttctcata
    13381 atcctaaaaa cccaacttgg ctaaaccgcg ataggcttgt gttttcaggc ggacatgcca
    13441 gtgctttgct ttatagcttt ttgcatttaa gtggttatga tttaagttta gatgatatta
    13501 aaaatttccg ccaacttcat tcaaaaactc caggccatcc tgaaatttca actcaaggag
    13561 tagagattgc tacaggccca ttaggacaag gtatagctaa tgctgtaggc tttgctatgg
    13621 cagctaaaaa agctcaaaac ttactaggaa aagaattaat caatcacaag gtttattgtc
    13681 tttgtggaga tggggattta caagagggaa tttcttatga aacgtgttct ttagcaggac
    13741 ttcataaact tgataattta atcatcatct atgatagcaa tgaaatttct atcgaaggag
    13801 atgtaagctt agcctttaat gaagatgtaa aaatgcgttt tgagtcacaa ggctttgaag
    13861 ttttaagtat cgatggacac gattatgaag caattgataa ggctctaaaa caagctaaag
    13921 aagccaacaa accttgcctt atcatcgcaa aaacaaccat agcaaaaggc gcaggagagc
    13981 ttgaaggaag tcacaaaagc cacggcgcac ctttgggtga agaggttatt aaaaaagcca
    14041 aagaaaaagc aggatttgat ccaaatttaa atttttatat acctaaagca gcaaaaattc
    14101 gcttcgaaag tgctgtagaa cttggagatt tagaagaagc taaatggaaa gataagctcg
    14161 aaaaatcaga aaaaaaagaa ctcttagaaa aacttttaaa tcctgatttt agcaagataa
    14221 attatcctga ttttaaaggc aaggatttag ctacaagaga tagtaatgga gaaattttaa
    14281 atgctctagc taaagatttg gaaggatttt taggcggaag tgcggactta gccccatcta
    14341 ataaaaccga actttatgga atgggtgatt ttgcggaagg aaaaaatatt cattttggta
    14401 tcagagaaca cgctatggct gcgatcaata atgcctttgc aagatatgga attttcttac
    14461 ctttttcagc aacatttttt atctttagcg aatatttaaa acccgcagct aggatagcag
    14521 ctttaatgaa agtcaaacat tttttcattt tcacacatga tagcataggc gttggcgaag
    14581 atggaccaac tcatcaacct atcgaacaac tcagcacttt tagagctatg ccaaatttct
    14641 taacctttag accagctgat ggagtggaaa atgttaaagc ttggcaaata gctttaaatg
    14701 cagatattcc aagtgctttt gtactttcac gccaaaagct taaggcttta aatgaacctg
    14761 tttttggtga tgtaaaaaac ggggcgtatt tacttaaaga aagtaaagat gctaaattta
    14821 cgcttttagc aagcggaagt gaggtttctc tttgcttaga aagtgcaaat gaattagaaa
    14881 aacaaggctt tgcttgtaat gtaatctcca tgccttgttt tgaactcttt gaaaagcaag
    14941 ataaagctta taaagatagg cttttacagg gtgaagttat aggggttgaa gcagcacatt
    15001 ctaatgagct ttataaattc tgcgataggg tttatggcat agaaagtttt ggagaaagtg
    15061 gtaaagataa agatgtattt gagcattttg gttttagcgt tccacaaatt ttaaatttca
    15121 ttctcgataa gtaaaatgga ggcaaatttc aaatttcaaa aagaagaaaa taaagttttt
    15181 atttttggaa tttgggataa aacgagtgtg tctaagatta aaatcaaaga tctattgagc
    15241 caaatttctc aaacaaattg tatttttgat tttagtcaat taaatgaaat cgatatggct
    15301 ggagtgagat tttttcttgc tctagagcat gatttgaaaa aaaacgatat cttgatttta
    15361 aaacaaggat taaacacacg ctttaaaagc ctttttgagc tttgtgaaaa aaactatcaa
    15421 agaattaatg aaaaacaaga gaaaaaattc aattttacag acttttttat ttctttagga
    15481 attttaagtt ttgatctttt aaagattttg caaaaattta ttaactttac gggtgctttt
    15541 tttaccagtc tttttttatg tataaaaaat cctaaaaatt tccgctttat atctttttta
    15601 tatcatattg aaaattcagc ttttaaagcc ttgcctattg ttattttaac cgctctttta
    15661 gtcggggttg tgcttgcata tcaagctgct tatcagcttg cacaatttgg agctaatatt
    15721 ttcatagtag atttagtagg aatttcagcc actagagaac ttgctccttt aatcgccgcg
    15781 atagtcatag caggtagaag tgcaagctct tatacggcac aaattggggt catgaaaatc
    15841 acagatgaga tcaatgctat gaataccatg ggctttcgct cttttgaatt catcatcatt
    15901 ccgcgggtca tggctttagt tattgccatg cctttaatcg ttgctctaag tgatgcgatc
    15961 agtatattag gaggaatggt agtagcaaaa ataaatcttg atatatcctt tggagaattt
    16021 ttaaggcgct ttagggaagc tgtggaaatg aaacatatca tcatagggct tgcaaaagct
    16081 cctatttttg gttttttaat aggacttatt gcttgttttc ggggatttga ggttaaaaat
    16141 accactcaaa gtataggaat ttatactaca aaaagtgttg taaatgctat attttgggta
    16201 atagcatttg atgctttatt ttctgtggtt ttaactataa tggaagttta aatgattata
    16261 aaagcgcaaa atattatcac ccgatttgga aataaagttg tccatgatgg agtcagtttt
    16321 gaaattaaca aaaacgaaat ttttgggatt ttaggaggaa gtggaaatgg caagtctgta
    16381 ctcttaaaac aaatgctaat gcttgaacat tttgatgagg gagaatacga aattttaggc
    16441 tttaagctaa aaaacattag cgaggaagat gctttagcgc tgcgtaaaaa atggggtgta
    16501 gtatttcagt tttctgcact ctttagcttt tttagcgttt atgaaaatat agctatccct
    16561 cttaaagaat atacaaattt agattccatt gctataaaag aactggtatt gatgaaactc
    16621 aaaatggtcg gtttaaatga agctgtttta aaacagcttc caagcgagct aagtggcgga
    16681 atgcaaaaaa gagttgctat tgctagggct ttggctcttg atagtaaatt acttttttta
    16741 gacgagccta cttctggact tgatccgcat agtagtcgtg aatttgatga tttgatacta
    16801 gaacttaaac aaagctttga tcttaatatt gttttagtaa cacacgataa agaaagtatg
    16861 aaaaatctgc tcgagcgttt tatcatctta gaagataaaa aagttgcctt ttgtggaaat
    16921 tatgaggagc taagggtgca aaatgaaaga ttgtttaaaa gatttatgga gtaaaagtgg
    16981 aaaataaagc aaattatttt tttgtagggc tttttgtttt tggagttttt tttgctagta
    17041 ttggtttcat gctttggctt ggaggatact caaaagaaga aagttttgaa tactatgaaa
    17101 ttcatacaca agaatctgtt gcaggccttg gaatcaaagc tcctgtaagg cttttaggag
    17161 tagagatagg aaatgtggaa aatatcagta tttatgataa agaaaattta ggggtaaata
    17221 ttttaattaa aatcaaaaaa ggaaccccta taaaagaaga tacttttgca actttgcaat
    17281 ttcaaggcat tacaggactt aaatttgtac aacttcaagg aggttctaaa aacagtccaa
    17341 aacttcaagt aaaaggtaaa gaagaatttc ccgtgattca atttaaagaa ggtttttttg
    17401 ctgctataga tagacaaagc gagcacatct tttctttgat aaaaagagca gatgataaat
    17461 caaaagagct ttttagtgat aaaaatataa aaaatttaga aatactttta gataatttag
    17521 cacaactaag caccacttta aataaagatt ctaaaacatt aaatcacaat atcgcaaaca
    17581 ctagcttaaa acttggagaa atggcagaga atgtaagctt aagtgcaaaa ggttttaatg
    17641 caagtttaaa ggatatccaa gaaggagctt tagcgcttag ctcttttgca aaaaaagcca
    17701 atgttaaact tgattcttac gatgacttac gactttcctt agcagaaaat ttagaacttt
    17761 tgaaaaaagt gcttatagaa agcaatatct tgatacaaaa tctacaaaaa agtccatcgg
    17821 atttaatttt taaagaaact aaacccaaac taggaccagg agaaaaacaa tgaaaaaatt
    17881 catatacatt actatcttag cctttatatt taatggatgt tcaattccaa ctagcactct
    17941 tgataaaacg caaagcttta tacttaaaaa tgatgaactt cctcttcaag ccaattttat
    18001 taaaagcgat aaaattctta aaattcaaaa tgcgtccttg cctttatatc ttcattcaag
    18061 atcaattatt tatgtgcaaa aaggtataag caaggcttat gcgtatcatt tttgggcaga
    18121 tttacccaat aatctttatc aatccttgct gctatccaaa tttgaacaaa gtcaaatctt
    18181 taaagccctg ctttcccaag gaagctctgt gggaagtgat tatatacttg aaagcaggat
    18241 agattctttt gaacaagtgg ttgatgaaaa tgaaaattat gtaagcattt ctattagtat
    18301 aaatttcatc gacgcaaaag aaagtaaaat catcgctcat cgcctgtttt caatcaaaga
    18361 aagggttaaa aaaatagata tttttgatgt ctatcaatcc tttgaaaaag ctttaaattc
    18421 tctaggaaat gaaatagttt tatggatcaa tgccacactt gatgaaaaat aggaacactt
    18481 tttgcttttt aaacctttag caatattttt tgaaaggtgt aaaatgaaaa atgaattgga
    18541 tgtttttaaa aagcacttgg gtgaaataca aggcgtaagt gagtttaaag ctacacaaat
    18601 ttgctcacaa ataaatgatg caaatgattt tatcggtgct ctgcaaatac ttgatttaac
    18661 gcttaaaaaa attgaaaaaa gtatcacaga aagacttgat gaacaaaacg atgatttaca
    18721 aaaaagaacc ttagatgcaa caagttctca acttatccaa aactgctctt ttatgggtac
    18781 agcacttttt ggaaatattt ttaatgtata tgtaggtcaa aaactttttg aatttgaaat
    18841 ttcaaatcct cttttagttt tagaaaaagc agggtatgaa ggagttttag cttatattca
    18901 agataaaagg gatgaaatta aagatatttt atgcaaatta tcaagtgcta ttaccatggg
    18961 aataagcatg gataatatga atttttctga ctctgcaaca aactttaaaa atcttttcag
    19021 ataagagtta aaactcttat cgctttaaac atactcatta aaattaatct taagaggttt
    19081 tcatatttta gcttaaagag atattccgct ctttttcaag ctaggttgaa aaaaaagggg
    19141 gagggaagca acctatgtga gatctttgaa gatctcttta aactaaaata ttacattatg
    19201 ttttagttta atttatagga ataatcattt ttaaaataat attttaattt aaaattactt
    19261 aaatatttat aaaaaaataa tttagtaact taaattattg aaaaattttt gtaaaaattt
    19321 cccaattttt acaaataaaa ctcttataag ctagataaaa tttctgcgcg cccattaata
    19381 atagccacac aatgctcata atgagcacta ttaagctcat ccacacttcc tgcaccccat
    19441 tttccattaa aatgctttgg agttccatcc ttttggcata tcataggttc tatacaaaaa
    19501 accattccat ttttaatttt tggaccactt tttgcgcttg cgcctttttc taaataattt
    19561 aaaatttcag gttctccatg aggtttgcgt cctataccat ggccacaata tccacgaagc
    19621 ggaacaaaac ctcttaaatc tataaattct cccaaagctg cagaaagctc tttaaaacgc
    19681 ataccctcac gaataatatc tatggcatga tataaagcgt ctttagcaca agaaatcaaa
    19741 gcctcatctg tggatgaaat tttacctata gctatagtac gcgctgcatc accataatat
    19801 ccatcaatca aacttcccac atcaagtcct aaaatatcac cctctttgat gattttttca
    19861 tcaggaattc catggataca aacctgattt aaagaagtgc aaattgcacc aggaaaacca
    19921 taaagccctt taaatgaagg ttttgctcca agacttaaga taaaatcttc cgccatctta
    19981 tcgatttgct taagactcat acccgcttta atctcgtttt ctaaaaaatc caaagtctta
    20041 gcgacgattt gatttgctac tcttaatttt tctatttctg ctggtttttt taattctatc
    20101 attgtatttc cttataaatt tagccaaatt ttagcagtat tttctaaaga cttgacatca
    20161 cttgaagcat aaaaatgtaa ttttgctttc tcttctttta acaaaagttt ttgcctttgt
    20221 tttaaaaact ctactatagc atctcctgaa tgaataagct ttgtctttga accaaaataa
    20281 acactcaagg aatttgctag caaaggaaaa tgagtacaag caagtatcaa agcatcagga
    20341 gtttcaatcc ctttaaaata ataccgcata gcactttgca acaactctcc ttcaaaaata
    20401 ccctcttcaa ccataggcac aaaaagaccc gtagctaaag cgtctacatt attaaaacct
    20461 tgtttttgca aacgattttg atattctttt gactgaattg ttgcctttgt ggcaataact
    20521 aaaatttttt tatttttatc taacaaggct tttttagtag cctcaacacc cgcatcaata
    20581 accccataaa taggaaaatc agcttttaat cttaaggcat ctaaagcata agcactagca
    20641 gtattgcacg caataataag catatcgata ttaaattttg aaaaaaaatc caaagcctca
    20701 agacaaaatt tgactatagt atctttatct ttaaccccat aaggaacgcg ggcagtatct
    20761 ccataataaa taatttcgtc aaaaagtctt gcctcataaa gtgattttaa aacactaagt
    20821 ccacctacac cactatcaaa aacgcctatt ttcatcttaa tatcttctag cacctatata
    20881 tcgatttttc caataagaac tatttaaatc cacttctctt actccaccct ttgtagaaag
    20941 atggataaat ttacccttac tcatataaat tcccacatgc ataccatttg gtcctctacc
    21001 tgttttaaaa aaaacaagat ctcctgtttt tagttttgat ttagaaactt ttatacccga
    21061 gcgtagttgc tttgttgtag tgcgtggtat gcgtgtatta aactgagcta gggtgctttg
    21121 agcaaaaccc gaacaatcgg ctcctttttt tgttgttccg cctaaaacat aaggagtttt
    21181 tttccattca ttagcaatca ttcttaatct tgtttcttta tcaacattat aatttgttgg
    21241 ggtatgactt gcattttgag ctaaactgca tccacctata taaaaagcaa tcacaacaag
    21301 aaagaaaata acaaatctca taaatttcct taaggacgcg tggtaaaaaa tttaagataa
    21361 ataaaacccc aaatcccaga acaaaatgaa gcaatcaaaa tagcaagatt atctgcataa
    21421 ttaaaaatat cgctaacttc atacgccaag ccatcgataa acaaactcat tgtaaaacca
    21481 attcctgtaa gtatacaaac cccataaagt tgtttcaaat ttgaaccttg gggcaaggct
    21541 gcaaatttaa agcggattgc caaataagaa aacaaaaata cacccacttg tttacccaca
    21601 aaaagcccca agaaaatacc tatacttaca cctgaaaaaa ttgctcctat atcgatattg
    21661 gataaattta ctccagcgtt agcaaaagca aataaaggca agataacaaa agcgagccaa
    21721 aattttagac tttcatagat ttcttctaaa aatgcttctc catttttagt ttgcatcggt
    21781 ataaaaaatg ctgtaataat tccagctaaa gttgcatgca caccactttt taaaacacta
    21841 atccaaagaa taactgagca aataaaataa aaagactttc ttgttattcc taaaatattt
    21901 aaaatcaaca tcataaaaat agcaataccc acaactacga aagcagccac agaaagcttg
    21961 gttgtataaa aaatcgcaat aattaaaata gcacccacat catcaaaaat agctaaagaa
    22021 agtaagaaaa tttttaaact tgatggaata tgtttgccac acatcatcaa aatagctaaa
    22081 gcaaatgcag tatctgtagc cgttggaata gcccatcctt ttaaagtgta agcatcgcct
    22141 atattgacta tagcaaatat taaagcaggt ataagtatac cacccaatgc ccccataaaa
    22201 ggcaaaacaa tatttttagg atttttaaaa tctccgtgca aaaattcctt cttaagctca
    22261 agccctatag caaagaaaaa tatagatata agcccatcat ttatccaaag taaaaaaggc
    22321 ttattaagct caaattcacc tacactaaat ccgactttta aatttagaaa ttctcgataa
    22381 tgttcgctaa aagatccatt ttgcacaagc aaagcaagta aagtacaaac tataagtaaa
    22441 acgccgccaa aagcctcatt taaaactaaa gtttttaatt tatgtactat attattcatt
    22501 taacaatctt aagataaata aaaccaacaa tggcacttaa aaaactagct actaaaatag
    22561 caagtttatc cgcatattca aaaatatcac tatttttata agccaaacca tcaataaaca
    22621 agctcatcgt aaaaccgatg cctgttaaaa tacatatacc ataaaatttt ccatatttaa
    22681 tattttcagg taattttgca agctttaatt ttatagccaa ataacaaaat ccaaaaaccc
    22741 ctagttgttt ccctaaaaat aagcctagca taatccccat acttacaggc gaaacaatag
    22801 actcaaaatg catatctctt aaatcaatac ccgcatttgc aaaagcaaat aaaggcaaaa
    22861 taaaataaac cacccaaggg tttaaatcct tatgtacttc atgaagatag ggttttttat
    22921 ttttagtatc aagagggata aataaagcta tgattacacc cgctaaagtt gcatgaacac
    22981 cgctttttaa catggctatc cataaaacca cacccactaa aacataaaga ggtaagtgag
    23041 tgacatgaaa ataatttaaa acaaataaaa taaaaataca taaaagacat acaataattg
    23101 ctaaagtaga taattgatct gtataaaata aagcaatgat aataatagcc cctaa
//
LOCUS       DARAII010000014        23074 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.014, whole genome shotgun sequence.
ACCESSION   DARAII010000014 DARAII010000000
VERSION     DARAII010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23074)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23074)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23074
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.014"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..530)
                     /locus_tag="SB143_000473"
     CDS             complement(<1..530)
                     /locus_tag="SB143_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEF9749040.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELEKAQIELLKVNDFKNNVYIRPVIFL
                     GDGVMGLYHVKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFVRNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAG"
     gene            857..1063
                     /locus_tag="SB143_000474"
     CDS             857..1063
                     /locus_tag="SB143_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEF9749041.1"
                     /translation="MPIVNIKLAKPALSKEQKAELIADITELLSTKYNKSKERVVVML
                     EDIESYDIGFGGESVEAIKAKANK"
     gene            1060..1518
                     /gene="bcp"
                     /locus_tag="SB143_000475"
     CDS             1060..1518
                     /gene="bcp"
                     /locus_tag="SB143_000475"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEF9749042.1"
                     /translation="MSVLKVGDEAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTP
                     GCTTEACDFSANYDKFCDKNAVIIGVSPDGVTSHDKFIAKFNLKHILLSDSEKEVAKA
                     YGAWGLKKNYGKEYEGIIRSTFVIDEAGKIAQIYSNVRVKDHALKVLESL"
     gene            1518..2609
                     /locus_tag="SB143_000476"
     CDS             1518..2609
                     /locus_tag="SB143_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEF9749043.1"
                     /translation="MLVHICCSVDSHYFIEELRKEYPKEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLKAVKGYEDEPEKGARCEICFDLRMGSSVEFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKDGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKSFIDELMSPINAQILPASIEARIALYKKVNLLEKKG
                     IKFEIIRQKFLNYRLLSALIKLDKKAVKSHILFYSHFKNHYTRFSLDEKNLNENLKNG
                     IYKSTKDEISFIEFWRFNSYFKNKWKNFEDFLKYPLKIEEEIKWRNKHFGAYDLSPVI
                     VLEKILPTRYEIIAKSEIYYDVKEVIKRT"
     gene            2724..3164
                     /gene="fabZ"
                     /locus_tag="SB143_000477"
     CDS             2724..3164
                     /gene="fabZ"
                     /locus_tag="SB143_000477"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEF9749044.1"
                     /translation="MIDVMKIQEILPHRYPFLLVDKITELKVGEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMDAKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMQVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            3175..3966
                     /gene="lpxA"
                     /locus_tag="SB143_000478"
     CDS             3175..3966
                     /gene="lpxA"
                     /locus_tag="SB143_000478"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEF9749045.1"
                     /translation="MKKIHPSAVIEDGAILGDDVVIEAYAYVSKEAKIGNGVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKDEQKSGVIIGQNSTIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGDNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRFSKAFKFL
                     FRQGDLKENAQKLLENNESENVNKMCKFILETKRGIPVYRGKNNA"
     gene            3959..5182
                     /gene="clpX"
                     /locus_tag="SB143_000479"
     CDS             3959..5182
                     /gene="clpX"
                     /locus_tag="SB143_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEF9749046.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKHEHGVDFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKSELQD
                     DDVELFKSNILLIGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVERAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQDFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDNEKENSKA
                     LLEKIEPDDLVHFGLIPELIGRLHVITSLNELNEDDMVRILTEPKNAIVKQYQKLFAI
                     DGVNLKFEDDALREIAKLALERKTGARGLRSIIEEIMVDLMFELPEYKNYDIVITKEV
                     VRDGAKALLIKKKIS"
     gene            5196..6236
                     /locus_tag="SB143_000480"
     CDS             5196..6236
                     /locus_tag="SB143_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEF9749047.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     EKYGSRAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGANLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDTSIVNYVKEKYNLIIGERTGEEI
                     KIAIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            6226..6975
                     /gene="mreC"
                     /locus_tag="SB143_000481"
     CDS             6226..6975
                     /gene="mreC"
                     /locus_tag="SB143_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEF9749048.1"
                     /translation="MKNKLIFVLVLFFLVFISFYYGGLVKKNVLLVNDTVLEKFYGIK
                     DAITEFFSKHFDQVDQIEQLKARNQELEYAAVLTTSFANQLNRILEDKNSTRYLPQVS
                     LVRVISYVKLNDYKRLWLDFAKVSPNKNKGLIHQGYTIGIAINKDGRAMALLQGDEQC
                     VFSVYIGKNKIPGLIQGEDDKLKVKFIPKWAKINIGDEILTSGLDNIFFSDVPVGIVS
                     AIKDEDMYQSVEVKPYANINIPAYLYIIDSL"
     gene            complement(6970..7893)
                     /locus_tag="SB143_000482"
     CDS             complement(6970..7893)
                     /locus_tag="SB143_000482"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749049.1"
                     /translation="MLNSKDRTQVILEKSGLSLSKFATILGKDRRTLAKFIENDTVKE
                     LDTKSKEKICEFFRYPFKIWESNENEFYTLLNQIENNEIRIIDEGYIGGLKYIFENEN
                     EGSLILHPAFPNPAYRDFIVPLVYQNNDSEEARIYRIKRGEKMRAYSFNASEWYSIKS
                     LLEFCFSPIGNFYTKEQKIQILELMINTFKDNLNKSLYFFDSYDKKIYGLDVFYLSIN
                     AKENTMFFKAPLEMLLVEIKNSTLVHKIHEHYTHAKKCPAHILTQDACFIMEILLQCL
                     KDNLDIKESCDILDKKSPYGNLFKKSLSVDL"
     gene            8141..10048
                     /locus_tag="SB143_000483"
     CDS             8141..10048
                     /locus_tag="SB143_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propionyl-CoA synthetase"
                     /protein_id="HEF9749050.1"
                     /translation="MGIVYEQTYRESLQNPEAFWAEAAKKVHWYNEWDRVLDDSDGHY
                     RWFVGGCMNTCYNALDLHVHNGRGDQLALIYDSPVTDTKKKYTYKQLRDRVAKVAGIL
                     ANKGVVKGDRVVIYMPMIPEALIAMLACARLGAIHSVVFGGFAAHELATRIEDAKPRM
                     IISASCGIEVSSIIEYKPILDEAIKKCTHKPTTCLIWQRPQYRANMLPWRDIDWELEE
                     EKTRGVDPVPVLATDPLYILYTSGTTGSPKGVIRSNGGHSVAMKWSMDNIYNAKAGDV
                     FFTASDVGWVVGHSYIVYAPLMNGCTTIVYEGKPVRTPNPSAFWRIIEEYKVNVLFSA
                     PTAFRAIKKEDPKGEWIKKFNLDSLRSIFVAGERCDSDTLKWIEKLTKKPVIDNWWQT
                     ETGWAIAANPLGLEAQVVKAGSPTKPMPGFNLKVLDEKGQELGAGKKGILCLKLPLPP
                     ACLMGIWENDERYRRGYLDQFPGYYLTGDTGYIDKDGYVYVLGRMDGIINVAGHRLST
                     GEMEEIIAKHPDVAECAVIGVNDELKGEIPMGFIVLKEGIERDHRGIVEGVVALVRQE
                     IGAVASFKIATVVSALPKTRSGKILRKNLREIADGSTLNVPATIEDSNVLKACEKAIN
                     ALGYPKNKGEK"
     gene            10048..10923
                     /gene="prpB"
                     /locus_tag="SB143_000484"
     CDS             10048..10923
                     /gene="prpB"
                     /locus_tag="SB143_000484"
                     /EC_number="4.1.3.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylisocitrate lyase"
                     /protein_id="HEF9749051.1"
                     /translation="MSAGKKFKELVKTSKPLIIVGAVNAYSALQATKIGHKALYLSGS
                     GVASASYGLPDLGIIALEEVCIDVRRICSRVDTPLLVDADTGFGGAFNIARTIKELIR
                     AGAAATHIEDQVAQKRCGHRPNKELVSTEEMCDRIKAAVDAKIDPDFVIMARTDAHAI
                     EGQQKAIERALAYVEAGAEMVFAEAITSLEEYEEFVKNVKVPILANITEFGKTPYFTK
                     EELNRAGVSMVLYPLSANRAMNKAAVQVYESILKNGHQKDVLEIMQTREELYEMLDYY
                     SYEQKLDELFKRGAK"
     gene            10920..12047
                     /locus_tag="SB143_000485"
     CDS             10920..12047
                     /locus_tag="SB143_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase/methylcitrate synthase"
                     /protein_id="HEF9749052.1"
                     /translation="MSISEATKKTGGLAGVIAGQSAICTCGLGNGLNYYGYSIEELAQ
                     NAEFEEIAYLLQFGELPNAKELENYKEKIIAQRALSENLKNVLKAIPKEVHPMNLMQT
                     AVAALGALEGENEDFSDQDEKIIRLLGILPSMLCYWHHYVNFGKEIDFDSNQTSIAGY
                     FLEKLKLEAPKEDFIKAMQCSLILYAEHEFNASTFTARICASTKSDIFSAVAAAIGAL
                     RGPLHGGANEAAMHLIESFKSVEDAIEGVNKKLENKELLMGFGHRVYGLGGDPRNALI
                     KVWSKHLGGDDLLFKISEAIEALMKEKRPSLPPNADFYSASAYHFMGIPTEYFTPIFI
                     MSRVSGWCAHIKEQRANNKLIRPSSEYIGVEPRKFVKIQDR"
     gene            12057..13511
                     /gene="prpD"
                     /locus_tag="SB143_000486"
     CDS             12057..13511
                     /gene="prpD"
                     /locus_tag="SB143_000486"
                     /EC_number="4.2.1.79"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylcitrate dehydratase"
                     /protein_id="HEF9749053.1"
                     /translation="MSDMGILEAKRPEFDELLTKIAKYADEFEITSDLALETARYCLM
                     DTIGCGLLALKYPACTKLLGPSVEGAEFRPLGAKVFGTSYQLEPIRGAFNVGAMVRWL
                     DFNDTWLAAEWGHPSDNLGAIWAVADYVSRKNISEGKEPLKVKCVLKAMIKAHEIQGV
                     LALENCFNKVGMDHVLLVRIASTAVAAKLLGCDFEEIRNAISHAFIDGGALRTYRHAP
                     NTGSRKSWAAGDASSRGVDLALKAKTGEMGYPSALSAKFWGYEDVKMKGQKLTIPQEF
                     GSYVMENVLFKISFPAEFHAQTAVEAALALHDEVKDRLEQIEKIIITTQESGHRIINK
                     VGELANPADRDHCIQYMVAVPLIFGRLNADDYEDSVASDERIDALRAKMQVEVDDRYT
                     KEYLESDKRSIANAVQVFFKDGTSTKKVEVEYPIGHKRRRSEGIPLLIAKFKANLAAR
                     LSPKQCEKIMQICEDQKSLEQMNFNEFSDLFWLG"
     gene            13576..14517
                     /locus_tag="SB143_000487"
     CDS             13576..14517
                     /locus_tag="SB143_000487"
                     /inference="COORDINATES: protein motif:HMM:NF012699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acid desaturase family protein"
                     /protein_id="HEF9749054.1"
                     /translation="MLFEKTILKELKVLYKLDNYHGIFAVLWDYLQIILTIAISCFMH
                     NIFMYLFAVLFIGTRQRALATILHESAHRILAKNRKLNDFLGKYPSGYLIFQTFEKYR
                     QSHVIKHHGFLGIENKDPDYDFYIQSKLFASRSLKEFIFRHLILPLFLGKTFDFISYL
                     IRNRLGDFKDKEIKYLILFWIAIFGICFYVNVLDILLMYWFVPLLTSFPMVGHFIEMA
                     EHFPIIKNKREIEKSWNRFGNKIELFFTGLHKENYHLIHHLFANIPFWNLDKAHNILC
                     KNEEYRLLNSNMGGIFSSSNKASSLWKKIIKKELKIC"
     gene            14511..15404
                     /locus_tag="SB143_000488"
     CDS             14511..15404
                     /locus_tag="SB143_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEF9749055.1"
                     /translation="MLKNPKFQAFFFAFLAAIFNAFVGIFSVFLFKKGFMSSEVAFYK
                     CFVASVILFAILIYMRKLGALLVFIKQKIFTLLLLAFFGFFMLYHFESAAYTSMGVAN
                     VVFVLFGVGMIITFICEALDAKRFFHLNELLAMVFALLGLWMIFLAEGGTLENFTHLK
                     GLVNAILAGIGYALFLFFTRKLKLGFGLIPLCALLFIGSLYLSIPLFGANLNLNFSLE
                     SLILILALAFLPTIGGFYCTTRALSLAKSNSVQLIELSEPLFAMLFGFLFLAQSVSFL
                     QILGGVFILFAIFVHEFKLKL"
     gene            complement(15610..15906)
                     /locus_tag="SB143_000489"
                     /pseudo
     CDS             complement(15610..15906)
                     /locus_tag="SB143_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778059.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(15943..16185)
                     /locus_tag="SB143_000490"
                     /pseudo
     CDS             complement(15943..16185)
                     /locus_tag="SB143_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002833078.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
     gene            16302..19568
                     /gene="carB"
                     /locus_tag="SB143_000491"
     CDS             16302..19568
                     /gene="carB"
                     /locus_tag="SB143_000491"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEF9749056.1"
                     /translation="MPKRTDIKNILLIGSGPIVIGQACEFDYSGTQAAKTLKEQGYRV
                     VLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANAALALSPIHEILIEESLLGWKEYEMEV
                     IRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQAMRNASFAILREIGVD
                     TGGSNVQFAVNPINGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERNLSGFDRVKFEDKNDLVFKIRNANEKRLLYVAQAFREGFDVKELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILHNKTLLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNEARDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDLGVKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRGVIEREKPDGIIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVTDESELRLYMQ
                     EAVDVSDKSPVLIDQYLDNATEIDVDAISDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEQIVQKTADIALNLGVVGLLNIQFAIYNNELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDAFGVVNFDNAILRPKPSKYISVKEAVFPFSK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQISSFNHLPESGVVFISLKEKDKKYA
                     KKLASEYSKLGFKLMATSGTCKEIVETGFECELVHKISEGRPNVEDKLKNGEIQLVIN
                     TSDSHTFAGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQNQSYLEVKSLQEWLK
                     "
     gene            19565..20416
                     /locus_tag="SB143_000492"
     CDS             19565..20416
                     /locus_tag="SB143_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEF9749057.1"
                     /translation="MNLKEKPIFISKDKNFTLYQNDCNKLLPKFEKQFDLIFADPPYF
                     LSNDGLSIQNGKIVSVNKGNWDKGDDIEKIDKFNLKWLSNAKIALKDTGSILISGTYH
                     NVFSLGRILQKLDFKILNIITWQKTNPPPNFSCRYLTHSTEQIIWARKSYKHKHIFNY
                     EILKLLNSNKQMRDVWAFNAIAPWEKTNGKHPTQKPLALLTRLILMASDESSLICDPF
                     SGSSTTGIAANLLNRQFIGFEKENEFINISIARKKELENNFNTIKNKINDLKLLNKNS
                     LFQGGYL"
     gene            20413..20934
                     /locus_tag="SB143_000493"
     CDS             20413..20934
                     /locus_tag="SB143_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749058.1"
                     /translation="MITGGSGGSNTRTGLVFEGQVDLATFLSQQNGYTLNEKQEVFFN
                     NEKVARIFKKYKLYEFLEELKINWKECISKKLLPDDSIYVIINNTLHIIECKFQSVAG
                     SVDEKLQTCDFKKKQYQKLFSRANIEVEYIYLLNDWFRKPEYKDVLDYIISVRCQYYF
                     EYIPLQKLGLPVP"
     gene            20934..21356
                     /locus_tag="SB143_000494"
     CDS             20934..21356
                     /locus_tag="SB143_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEF9749059.1"
                     /translation="MIYLAQTDTTAGFLSKNLEEINALKGRAKDQPCLITSAKFDELK
                     KIVRVPNQFKNWVRRAKKTTFIYPNNQAVRIVKDCKHAQFLEKMGCFYSSSANKHGQK
                     FDELWARSVADVVVDEIFVENTPSKIIKLHRKKLKKIR"
     gene            complement(21353..22339)
                     /locus_tag="SB143_000495"
     CDS             complement(21353..22339)
                     /locus_tag="SB143_000495"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEF9749060.1"
                     /translation="MKKFSLWCDFIENSFLDDDFLNLLSRGVNGATSNPAIFKNAILN
                     SPIYKEKIAKLKGKKAKEIYEELAIADIQKAADKLAPLYHTGNDGFISLEIDPRFYDN
                     TSLSLGEAKKLYSAIGKDNVMIKVPATNASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLIEFRKNNIALQGKNTHLRTPQAVISIFVSRFDRLLNSKAKEQNRIGILNA
                     NLAYNNIISKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSINTAPLDAINAFKTE
                     IEFKKPLMNFEIYTQLNAIISQNEREKACDELLKDGLEQFCIAFEEILQALN"
     gene            complement(22341..22964)
                     /gene="serB"
                     /locus_tag="SB143_000496"
     CDS             complement(22341..22964)
                     /gene="serB"
                     /locus_tag="SB143_000496"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEF9749061.1"
                     /translation="MIKLCVFDFDSTLMDGETIDILAKAYDKEKEVVDITHRAMAGEL
                     DFFESLQERVSFLKGMPYDLVLKIGQDLPLMNGAYELIEFLNSKNIFVVIFSGGFHEG
                     IDPAMKKLKVNLGFANYLHHKNNTLSGLVGGEMMFSNSKGLMLQRLKNFLNLQTHEVM
                     CVGDGANDIAMFNESGLKVAFCAKEILRSKADICVDNKDLKEIIKVI"
     gene            complement(22964..>23074)
                     /locus_tag="SB143_000497"
     CDS             complement(22964..>23074)
                     /locus_tag="SB143_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HEF9749062.1"
                     /translation="PPETLVKDKGMIYGIGKRDENILTILKVEALLKREF"
BASE COUNT         7904 a         3088 c         4461 g         7621 t
ORIGIN      
        1 cctgcttcaa tagcttcaaa ttttgcaatt tgagagttaa gatagtttgc gctcgctttt
       61 gctttaccca tacaagattt tacactattc cttacaaaag atgaaatttt tactttaata
      121 cctttttcta aaccttcttc acccaaataa gcaccccatt cccaagcagc gataccaaca
      181 cgcacaggag cttttacatg ataaagtccc attactccat ctcctaagaa gattacaggg
      241 cgaatataga cattgttttt aaaatcattt acttttaaaa gttcaatttg tgccttttca
      301 agctcttttt gagaaaaagg gcagtttaaa agagtaattt tagcagattc taaaagtctt
      361 ttagtgtgat cttcaagtct gaaaatcgct aagcctttat ctgttttata agctcttgtt
      421 ccttcaaaaa cagcattacc ataatgtaaa gaatgggtta aaaagtgcaa ggttgcatct
      481 ttaaaatcaa ctaattttcc atccatccaa attttatctg ctgagatcat ttttagcctt
      541 aatagtcata tttttgttaa aaaactttta attttagcaa aagtaaatta atgatagctt
      601 gatatataaa gtataaattt aaacatttat gaaggatttt aataaaaaat aaaatcaaac
      661 ttttagaatt tatcgagtcg attttattaa ggatatggcc tttttctgat gattaaaata
      721 agaatgagaa atttaatacc acgattttta agtcaagatt gtgaaaaact gaattaaatt
      781 ttttatagaa tttagtgtaa atttaaaaat ttatttatta aagtttgaaa taattataaa
      841 aatcaaagga gaaaaaatgc caattgtaaa tattaaacta gcaaagccag ctttaagtaa
      901 ggagcaaaaa gctgaattga tagccgatat aactgagctt ttaagcacaa aatacaacaa
      961 aagcaaagaa agggtagtgg tgatgttaga agatatcgaa agttatgaca taggttttgg
     1021 tggtgaaagc gtagaggcca ttaaggcaaa ggcaaataaa tgagtgtttt aaaagtaggg
     1081 gatgaggcgc cacaatttga acttttaaat caagatgggg tgaaaatcgc tcttaaagat
     1141 tttattggta aaaaagtgat tttatatttt tatcctaagg acaatactcc aggttgcacc
     1201 acagaagctt gcgattttag tgcaaattat gataagtttt gtgataaaaa tgcagtgatt
     1261 atcggtgtaa gtcctgatgg tgtgacaagt catgataaat ttattgctaa atttaattta
     1321 aagcacatat tattaagtga tagcgaaaag gaagtggcaa aagcttatgg agcttggggg
     1381 cttaagaaaa attatggtaa agaatatgaa ggcattataa gatcgacttt tgttatcgat
     1441 gaagcgggaa aaattgccca aatttatagc aatgtccgcg taaaagatca tgcactaaaa
     1501 gtgcttgaaa gtctttaatg ttggtgcata tttgttgtag tgtagacagt cattatttta
     1561 tagaagagct tagaaaagaa tatcctaaag aaaaaattat aggatatttc tatgatccta
     1621 atatccatcc tttaagcgaa tatgaattaa gatttttaga tgtaaaaaga tcttgtgata
     1681 agctcggtat caagctttat aagggcgagt atgagtatga aaaatggcta aaagctgtaa
     1741 aaggctatga agatgagcca gaaaaaggtg caagatgtga aatttgtttt gatctaagaa
     1801 tgggttcaag tgtagaattt gcagccaaaa taggagaaaa aaagcttaca acaacacttt
     1861 taacaagccc taagaaggat ttagagcagt taaaaaatgc tttgcaaaaa gagtgtgagc
     1921 cttacggagt agaattttta gctcctgatt ttcgtaaaga tggaggcact caaagacaat
     1981 ttgctttagc taaaaaggaa atgctttatc atcaaaatta ttgcggttgt atttatgggc
     2041 ttaaaaagca aaagcaagat aaaagcttta tcgatgaatt aatgtcacct attaatgctc
     2101 aaattttacc cgcaagcata gaagctagaa tagctcttta taaaaaagtt aatttattag
     2161 aaaaaaaggg tataaaattt gaaattataa gacaaaaatt cttaaactac cgacttttaa
     2221 gtgctttaat aaagcttgat aaaaaagccg ttaagagtca tattttattt tattctcatt
     2281 ttaaaaatca ttatacaaga tttagtttag atgagaaaaa tttaaatgaa aatttaaaga
     2341 atggaattta taaaagcaca aaagatgaaa tcagttttat agaattttgg cgatttaatt
     2401 cttattttaa aaataaatgg aaaaattttg aagatttttt aaaatatcct ttgaaaatag
     2461 aagaagagat taaatggcga aataaacatt ttggagctta tgatcttagt cctgttatag
     2521 tgcttgaaaa aattttacct acaagatatg agattatagc aaagagtgaa atttactatg
     2581 atgttaagga agttataaaa agaacataga tttaaaatat tttaaaatca cttaaaattt
     2641 tgactaaaat tgattggatt aacataattt ttaatgattt ttttatataa ttatgttttt
     2701 taattgtttt taaggctgat ttaatgatag atgtaatgaa aattcaagaa attttacctc
     2761 accgttatcc ttttttgctt gttgataaaa tcacagagtt aaaagttgga gaagttgttc
     2821 gaggatataa aaatatcagc ataagcgatc atgtttttat gggacatttc ccaggtcatc
     2881 ctatttatcc tggagttttg attttagaag gtatggcgca aacgggtggg gttttggctt
     2941 ttgaaagcat ggatgctaag gtagatccaa aaagtaaggt tgtatatttt acaggtattg
     3001 atggagctaa atttagaaat cctgttcgcc ctggagatag acttgattat gaaatgcaag
     3061 tggttaaaaa tcgtggcaat atgtggattt ttaagggtca agcttttgta gatggaaatt
     3121 tggttgcaga agcagaactt aaagctatga tagtagacaa ataagagaga atcagtgaaa
     3181 aaaattcatc ctagtgctgt aatagaagat ggagctattt taggtgatga tgttgttatt
     3241 gaggcttatg catatgtaag caaagaagct aagataggca atggggttgt tatcaagcaa
     3301 ggggcgagaa tactttcaga tactaccata ggtgatcatt ctcgtgtatt ttcatatgct
     3361 atagtaggtg atattcctca agatatatct tataaggacg agcaaaaaag cggagtaatt
     3421 atagggcaaa attctactat tagagaattt gctacgataa attcgggtac agctaaaggc
     3481 gatggtttta ctcgtatagg agacaatgct tttataatgg cgtattgtca tatcgcacat
     3541 gattgccttt taggggataa tattatttta gccaacaacg caaccttagc agggcatgta
     3601 gaactaggag attttaccgt tgtgggtggt cttactccta ttcatcaatt tgttaaagtg
     3661 ggtgagggct gtatgatagc aggtgcgagt gcgctttcgc aagatatagt acctttttgt
     3721 ttagctgaag gaaatcgtgc aagtattaga agtttgaatt tagtaggaat tcgtcgtcgt
     3781 tttgataagg atgaagtaga taggtttagt aaagctttta aattcttgtt tagacagggg
     3841 gatttaaaag aaaatgctca aaaattatta gaaaataatg aaagtgaaaa tgttaataaa
     3901 atgtgtaaat ttatattaga aacaaaacgc ggaatccctg tatatagagg taaaaataat
     3961 gcctagaaaa tgcagttttt gtaatgaagt ggaaaatcca caaagaagaa ttttagccaa
     4021 tgaaaacgat gatgcattta tttgtgagta ttgtgttgag ggggcttata gtattatcta
     4081 tggggaagaa aaagaattta aagagccaaa acatgaacat ggcgttgatt ttaaagatat
     4141 taccccaaaa gaattaaaag cttatttgga tcgctatgtc atagggcaag atagggctaa
     4201 aaaagttttt agtgtagggg tttataatca ctataaaaga cttttcaaat ctgaacttca
     4261 agatgatgat gtggagcttt ttaaatccaa tatccttctt ataggtccta caggtagcgg
     4321 aaaaacctta cttgctcaaa ctttagctaa atttttggat gtacctatag ccatttgcga
     4381 tgcgacttct ttaaccgaag caggttatgt gggcgaggat gtagaaaata ttttaacccg
     4441 tcttttgcaa gctgctgatg gagatgtaga aagagctcaa aagggcatag tatttatcga
     4501 tgagattgat aaaatagcta gaatgagtga aaatcgctct atcactcgtg atgtgagtgg
     4561 agaaggcgtg cagcaagctt tgcttaagat tatagaagga agcttggtta atattccgcc
     4621 taaaggagga agaaaacatc ctaatcaaga ttttattcaa attgatactt caaatatttt
     4681 atttgtttgt ggtggtgcat ttgatggctt agaaactata cttaagagaa aattaggcga
     4741 taaggtcgta ggctttttcg ataatgaaaa agaaaatagc aaagctttgc ttgaaaagat
     4801 agagcctgat gatttagtgc attttggcct tatacctgaa cttatagggc gcttacatgt
     4861 tataacttct ttaaacgagc ttaatgaaga tgatatggta agaattttga ccgagccaaa
     4921 aaatgctatc gtaaagcaat atcaaaaact ttttgctatt gatggcgtga acttaaaatt
     4981 tgaagatgat gctttaagag aaattgcaaa attagcctta gaacgaaaaa cgggcgctag
     5041 aggacttaga agtattatag aagaaataat ggtggatttg atgtttgagt taccagaata
     5101 taaaaattat gatatcgtta tcaccaaaga agtggtaaga gatggtgcaa aagcgttatt
     5161 aatcaaaaag aaaataagct aaaaaaggga taaaaatgat tttagatcaa cttataggat
     5221 ttttttcaag cgatatgggt atagacttag gaactgctaa tactcttgtt ttggtaaaag
     5281 ataagggcat agttatcaat gagccttctg ttgtggctgt agagagagaa aagtatggtt
     5341 ctagggctaa aattttagct gtaggaaaag aagctaaaga tatggttggt aaaaccccag
     5401 gaaatatcga agctattcgc ccgatgaaag atggagttat tgctgatttt gatatgacag
     5461 aaaaaatgat tcgttacttt atagaaaaaa ctcaccgcag aaaaagtttt ttaagaccta
     5521 gaatcatcat ttcagtccct tatggcttaa ctcaagttga aagaaaggct gttagagaaa
     5581 gtgccttaag tgcaggtgca agagaagtat ttttgataga agaacctatg gcagcagcta
     5641 ttggggcaaa tttacctata caagaaccta aaggaaattt agttgtagat atagggggtg
     5701 gaacaactga aattggtgtg atttcactag gtgggcttgt tatttcaaag tctattcgta
     5761 ctgcaggtga taagcttgat acaagtatag taaattatgt caaagaaaaa tacaatctta
     5821 tcattggcga aagaacgggc gaggagatta agatcgctat tggttcagct atccagcttc
     5881 caaaagaact ttctatggtt gtaaaggggc gcgatcaagt gagtggactt ttaagtcgta
     5941 tcgagcttac aagtgaagat gttagagagg cgatgaggga atatttaaaa gaaatagcag
     6001 atgctttaaa aatggtactt gaaatgatgc cacctgatct tgcaagtgat atagtagaaa
     6061 atggtgttgt cttaacaggt ggtggagcat tgattcgtgg acttgataaa tatttaagtg
     6121 aaattgttcg cttgccagta tatattgctg atgaaccact tttagccgtg gctaagggaa
     6181 cgggtaaagc tttggaggaa atttcactat tgcaacaatt gacgaatgaa gaataagctt
     6241 atctttgtcc ttgttttatt ttttttagtt tttatatctt tttactatgg gggcttggta
     6301 aaaaaaaatg ttcttttggt aaatgatacg gtgttagaaa aattttatgg aattaaggat
     6361 gctatcaccg aatttttttc caagcatttt gatcaagtag atcaaattga acaattaaaa
     6421 gcaagaaatc aagagctaga atacgcagct gtattaacta caagctttgc aaaccaatta
     6481 aatcgtattt tagaggataa aaattcaaca agatacttac ctcaagtttc tttagtaaga
     6541 gttatttctt atgtaaaatt aaatgattat aaaagattgt ggcttgattt tgccaaagta
     6601 tctcctaata aaaataaagg tttgattcat caaggataca ctataggcat tgcgatcaat
     6661 aaagatggca gagctatggc acttttacag ggcgatgaac aatgtgtttt ttctgtatat
     6721 ataggtaaaa ataaaattcc tggccttatc caaggcgaag atgataaact taaggttaaa
     6781 tttataccca aatgggcaaa aattaatata ggagatgaga ttttaacaag tggccttgac
     6841 aatatctttt tttcagatgt tccagtgggt attgtaagtg caatcaaaga tgaggatatg
     6901 tatcaaagtg ttgaagtaaa accttatgct aacatcaata tccctgccta tctttatata
     6961 atcgatagtt tataaatcaa cacttagact ctttttaaat aaatttccat atgggctttt
     7021 tttatctagg atatcacagc tttctttaat gtctaaattg tcttttaaac attgtaataa
     7081 aatttccatg ataaaacatg catcttgagt taaaatatgc gcaggacatt tttttgcatg
     7141 ggtataatgc tcgtgaattt tatgaactag ggttgagttt ttaatctcga ctaatagcat
     7201 ttccaaaggg gctttaaaaa acattgtatt ttctttagca ttgatagaaa gataaaacac
     7261 atcaagccca taaatttttt tatcataaga atcaaagaaa tataaagatt tgttaagatt
     7321 atctttaaag gtattaatca tgagttctaa aatttgaatt ttttgttctt ttgtataaaa
     7381 atttcctata ggcgaaaaac aaaattcaag taaagacttg atagaatacc actcgcttgc
     7441 attaaaagaa tatgctctca ttttttcacc cctttttatg cgatatattc tagcctcttc
     7501 gctgtcgtta ttttgatata ctaaaggcac gataaaatcc ctataagcgg gatttggaaa
     7561 agcagggtgt aatataagtg aaccttcatt ttcattttca aaaatatatt ttaatcctcc
     7621 gatgtatcct tcgtcaatga tgcgaatttc attattttct atttgattta agagtgtata
     7681 aaattcgttt tcattgcttt cccatatttt aaaaggatag cgaaaaaatt cacaaatttt
     7741 ttctttactt ttggtatcga gttcttttac tgtgtcattt tctataaatt tagcaagcgt
     7801 tctacgatct ttgcccaaaa ttgttgcaaa tttgctcaaa cttaagcctg atttttccaa
     7861 aattacttgt gttctatctt tagaatttaa cattgtctcg ctcttaaaaa ttatttttgt
     7921 tactttttga tacaaatata tttttttcat tattttttat attttctaat tattaaaaat
     7981 ataggtaaat atatatacaa aaattaaaat tttgttcaaa aaatatacaa aatttatttt
     8041 tttagctaca aaatcacaca attaaaccaa aaaattggca ttttattttt caaacaaaaa
     8101 ctctataatg caaattcaac ttatcaagaa aggatggatt atgggtattg tttatgagca
     8161 gacttatcga gaatctcttc aaaatcctga agcattttgg gctgaagcag ctaaaaaagt
     8221 gcattggtat aatgaatggg atagggtgct tgatgatagc gatgggcatt acagatggtt
     8281 tgttggcggg tgtatgaata cttgttataa tgcgcttgat ttacatgtac acaatggcag
     8341 gggcgatcaa ttagcactga tttatgattc tcctgttacg gatacaaaga aaaaatatac
     8401 ttataagcaa cttcgtgatc gtgttgcaaa agtagccgga attttagcaa acaagggcgt
     8461 ggttaaaggg gatcgcgttg ttatttatat gccaatgata cctgaagcac ttatagccat
     8521 gcttgcttgt gctaggcttg gggctattca tagtgttgta tttggaggct ttgcagcaca
     8581 tgaacttgct acgaggatag aagatgctaa acctagaatg attattagtg caagttgcgg
     8641 gatagaagta agtagcatta tcgagtataa acctatttta gatgaggcta ttaaaaaatg
     8701 tactcataag cctacgactt gtttgatttg gcaacgccca caatatagag caaatatgct
     8761 tccttggagg gatattgatt gggagcttga agaggaaaaa actcggggtg tagatcctgt
     8821 acctgtttta gctaccgatc cgctttatat actttatact tcaggcacca caggttctcc
     8881 aaaaggagta atccgctcta atggaggtca ttctgtggct atgaaatggt cgatggataa
     8941 tatttataat gctaaagcag gagatgtctt ttttaccgct tctgatgtag gttgggttgt
     9001 gggacattct tatatagttt atgcaccttt gatgaatgga tgtacaacta tagtttatga
     9061 gggaaaacct gtaagaacgc ctaatccttc agcattttgg agaattattg aagaatataa
     9121 agtgaatgtg cttttttcag ccccaactgc ttttagggcg attaaaaaag aagatcctaa
     9181 aggagaatgg attaaaaaat ttaatcttga tagcttaaga tctatttttg tggcaggtga
     9241 aagatgcgat agcgatacgc ttaaatggat agaaaagctt acaaaaaaac ctgtgattga
     9301 taattggtgg caaactgaaa caggttgggc gatcgcggct aatcctttgg gcttggaagc
     9361 acaagttgtt aaagcaggaa gtcctacaaa acctatgcca ggatttaatc ttaaggtttt
     9421 agatgaaaaa ggtcaagagc ttggagcagg aaaaaaagga attttgtgct taaaacttcc
     9481 tttacctcca gcttgtttaa tgggaatttg ggagaatgat gaaagatatc gtaggggata
     9541 tttagatcaa tttccaggct attatctaac aggagacaca ggctatatcg acaaagatgg
     9601 ctatgtgtat gttttaggaa gaatggatgg aatcatcaat gttgcaggcc atagactttc
     9661 aactggagaa atggaagaga ttatagcaaa acatcctgat gttgcagaat gtgcggttat
     9721 aggtgtaaat gatgagctta aaggtgaaat acctatgggc tttatcgttt taaaagaggg
     9781 tatagagcga gatcataggg gtatagttga aggagttgta gctttggtgc gtcaagaaat
     9841 tggagccgta gcttcgttta aaattgccac agttgttagt gctttaccta agacaagaag
     9901 tggaaaaatt ttgcgtaaaa atttaagaga aatagctgat ggttcaacct taaatgttcc
     9961 agctactata gaggatagta atgttttaaa agcttgcgaa aaagctatta atgctttagg
    10021 atacccaaaa aataaaggag aaaaataatg agtgcaggaa aaaaatttaa agaattagta
    10081 aagacaagca aacctttgat catagtagga gctgtcaatg cttatagtgc tttacaagct
    10141 actaaaatag gacacaaagc tttatatctt tcgggaagtg gcgtggcaag cgcgagttat
    10201 ggcttgcctg atttggggat tatcgcactt gaagaagtat gcattgatgt aagacgcatt
    10261 tgctctagag tggatacgcc tttattagtt gatgcagata caggttttgg aggtgctttt
    10321 aatattgcaa gaacgataaa agaattaatt cgtgcgggtg cagcggcaac tcatattgaa
    10381 gatcaagtgg ctcaaaaaag gtgcggacat cgtcctaata aagaattagt aagcactgaa
    10441 gagatgtgtg atcgtattaa agcagcagta gatgcaaaaa tcgatcctga ttttgtgatt
    10501 atggcaagaa cggatgcgca tgcaattgaa ggtcagcaaa aagctatcga acgggcttta
    10561 gcatatgttg aggctggagc tgaaatggtt tttgctgaag ctattacaag tttagaagaa
    10621 tatgaagaat ttgttaaaaa tgtaaaagtt ccaattcttg caaatatcac agaatttgga
    10681 aagactcctt attttaccaa agaagaatta aatagagcag gagtgtctat ggtgctgtat
    10741 cctttaagtg caaatcgtgc gatgaataaa gctgcagtgc aagtttatga aagcatattg
    10801 aaaaatggac atcaaaaaga tgttcttgag attatgcaaa ctagagaaga gctttatgaa
    10861 atgctagatt attattctta tgagcaaaaa ttagacgaat tatttaaaag gggtgcaaaa
    10921 tgagtataag tgaagcaact aaaaaaacgg gtggattggc aggagttatc gcaggacaaa
    10981 gtgcaatttg tacttgcggg cttggaaatg gactaaatta ttatggttat agcatagaag
    11041 agttagcgca aaatgcagaa tttgaagaaa tagcttattt acttcagttt ggagaattac
    11101 ccaacgcaaa agaattggaa aattataaag aaaaaatcat tgctcaaaga gctttgagtg
    11161 aaaatttaaa aaacgtttta aaagctatac ctaaagaagt tcatcctatg aatttgatgc
    11221 aaacagctgt tgcagcattg ggagctttag agggtgaaaa tgaggatttt agcgatcaag
    11281 atgaaaaaat catcagactt ttgggaattt taccgagcat gctttgttat tggcatcatt
    11341 atgtgaattt tggtaaagaa attgattttg attccaatca aacaagtata gcgggatatt
    11401 ttttggaaaa attaaaactt gaagctccaa aagaagattt tatcaaggct atgcaatgct
    11461 cattaatcct ttatgcagag catgaattta atgcttcaac ttttacagct agaatttgtg
    11521 cttctacaaa aagtgatatt tttagtgcgg ttgctgcggc tattggagct ttaagagggc
    11581 ctttgcatgg aggagcaaat gaagcagcga tgcacttaat agaaagtttt aaaagtgttg
    11641 aggatgccat tgagggtgtg aataaaaaat tagaaaataa agagctttta atgggttttg
    11701 gtcaccgtgt ttatggactt ggaggtgatc ctagaaatgc acttattaaa gtttggagta
    11761 agcatttagg gggcgatgat ttgcttttta aaatcagtga agccatagaa gctttgatga
    11821 aagaaaaacg cccaagtttg ccacctaatg cagattttta tagtgcatca gcttatcatt
    11881 ttatgggaat tccaactgag tattttacgc cgatttttat tatgagtcgc gtaagtggtt
    11941 ggtgtgcgca cattaaagag caaagagcaa acaataagct tatacgccca agtagcgaat
    12001 atataggcgt tgaaccaaga aaatttgtaa aaattcaaga tagataagga gaaaaaatga
    12061 gtgatatggg aattttagag gcaaaacgcc ctgaatttga tgaactttta acaaaaattg
    12121 caaaatatgc tgatgaattt gaaattacaa gtgatttggc tttagaaacg gctagatatt
    12181 gtttgatgga tactataggt tgtggacttt tagcgcttaa atatcctgct tgcaccaagc
    12241 ttttagggcc aagtgttgaa ggggctgaat ttagaccttt aggcgcaaaa gtgtttggaa
    12301 cttcttatca attagagcca atccgtggag cttttaatgt gggtgctatg gtaagatggc
    12361 ttgattttaa tgatacatgg cttgcggctg aatgggggca tccaagtgat aatttaggtg
    12421 cgatttgggc ggtagctgat tatgtaagtc gtaaaaatat cagcgaagga aaagagcctt
    12481 taaaagtaaa atgtgtccta aaagccatga taaaagctca tgaaattcaa ggagttttgg
    12541 cgcttgaaaa ttgttttaat aaagtaggaa tggatcatgt tttacttgta agaatagcaa
    12601 gcactgcagt agctgcaaag cttttgggtt gtgattttga agaaattcgc aatgctattt
    12661 ctcatgcctt tatcgatggt ggagctttaa gaacttatcg ccatgcgcca aatacaggca
    12721 gtagaaaaag ctgggcagca ggtgatgctt caagtcgcgg tgtggatctt gctttaaaag
    12781 ctaaaacagg agagatgggt tatccttcag ctttaagtgc taaattttgg ggttatgaag
    12841 atgtgaaaat gaaaggacaa aaacttacta ttcctcaaga atttggttct tatgtaatgg
    12901 aaaatgtttt atttaaaatt tctttcccag ctgaatttca tgcacaaact gcagtagaag
    12961 cagctttagc tttacatgat gaggtaaaag atcgtttaga gcaaatagaa aaaatcatta
    13021 tcacaactca agaatcagga catcgcatca ttaacaaagt aggcgagctt gcaaaccctg
    13081 ccgataggga tcattgtatc caatacatgg ttgctgtgcc acttatattt gggcgtttga
    13141 atgcagatga ttatgaagat agtgttgcaa gcgatgaaag aatcgatgct ttaagagcta
    13201 agatgcaagt agaagtggat gatcgctata caaaagagta tttagaaagc gataaaagaa
    13261 gcatagctaa tgccgtgcaa gttttcttta aagatggcac aagtacaaaa aaagtcgaag
    13321 ttgagtatcc tataggacac aaaagacgca gaagtgaagg aattccgctt ttaattgcta
    13381 aatttaaagc caatcttgct gcgcgtttaa gtccaaaaca atgtgaaaaa atcatgcaaa
    13441 tttgcgaaga tcaaaagagc ttagagcaaa tgaattttaa tgaatttagc gatctttttt
    13501 ggttgggtta aggcagacac aagactattc tagtcttgtg tttaatatag ttaatataat
    13561 gatttaggat taaaaatgtt atttgaaaaa actattctaa aagaacttaa agtgctttat
    13621 aaacttgata actatcatgg aatttttgct gtattatggg attatttaca aattattttg
    13681 acaatagcca tttcttgttt tatgcacaac atttttatgt atttatttgc agttttattt
    13741 attggcacga gacaaagggc tttagcgact attttacacg agtcagccca tagaatactg
    13801 gcaaaaaata gaaaattaaa tgatttttta ggtaaatatc caagcggata tcttattttt
    13861 cagacttttg aaaaatacag acaaagtcat gttattaaac atcatggttt tttaggaatt
    13921 gaaaataaag atcctgatta tgatttttat atacaatcaa agctttttgc ttcccgttct
    13981 ttaaaagaat ttatttttag gcaccttatc ttgcctttgt ttttgggtaa gacttttgat
    14041 tttatttctt atcttataag aaatcgcttg ggtgatttta aggataaaga aattaaatat
    14101 cttattttat tttggattgc tatttttggt atttgttttt atgttaatgt tcttgatatt
    14161 ttgttaatgt attggtttgt gcctttactt acaagttttc ctatggtagg acattttata
    14221 gagatggcag aacattttcc tattataaaa aacaaaagag aaatagaaaa atcttggaat
    14281 agatttggca ataaaattga attatttttt actggcttac ataaggaaaa ttatcattta
    14341 atccaccatt tgtttgcaaa tattcctttt tggaatttag ataaagctca taatatttta
    14401 tgtaaaaatg aagaatacag acttttaaac tctaatatgg gaggtatttt tagctcttca
    14461 aataaagctt cctctctatg gaaaaaaata attaaaaagg agcttaaaat atgctaaaaa
    14521 atcctaaatt tcaagctttc ttttttgctt ttttagccgc tatatttaac gcttttgttg
    14581 gaatttttag cgtttttctt tttaaaaaag gttttatgag ttcagaagta gctttttata
    14641 aatgctttgt ggctagtgtg attttgtttg cgattttaat ttatatgaga aaattgggcg
    14701 ctttgctagt ttttatcaag cagaaaattt tcacactttt gcttcttgct ttttttggat
    14761 tttttatgct ttatcatttt gagagtgctg cttacacaag tatgggtgtg gctaatgtag
    14821 tttttgtgct ttttggtgtg gggatgatta tcacttttat ttgtgaagca ttggacgcta
    14881 aacgcttttt tcatttaaat gagcttttgg ctatggtttt tgcacttttg gggctttgga
    14941 tgattttttt ggccgaaggt ggaactttgg aaaatttcac tcatttaaaa ggccttgtaa
    15001 atgctatttt agcagggatt ggttatgctt tatttttatt ttttactaga aaattaaaac
    15061 tgggttttgg gttaattcct ctttgtgctt tgctttttat aggaagtttg tatttgagta
    15121 ttcctttgtt tggagcaaat ttaaatctta atttttcttt agagagtctt atcttgattt
    15181 tagctttggc gtttttgcct actataggcg gattttactg cactactaga gccttaagtc
    15241 ttgcaaagtc aaattcagtc cagcttatag aacttagcga gcctttattt gctatgcttt
    15301 ttgggttttt gtttttggct caaagtgttt catttttgca aattttaggt ggagttttca
    15361 tactttttgc tatttttgtt catgaattta aattaaaatt gtaaaaagca gtttttcaga
    15421 aatttttttc aattggattt ttaaaatttc tttagaaaga gcagatgctt tatggcaagc
    15481 aaaagattgt ttattgcttg agttttgaca ttgattttga ctattttttt gtgtgatttt
    15541 aataagatat aattgcatag cttgatcttt ggaattttta tcaactgcca tattgcaatc
    15601 agtataatat ccagcctgac aagatttata aaaaagtttt tgggctaaaa tatcattttg
    15661 attaaataat tcaacccagc cttgcgcaaa gtacaacttt gtatcttttt tactaagcgt
    15721 agcgatgtgt tctaataaag caaagcttga gttttgatct aaaaaatatt ttaaattgct
    15781 ttgataagtt tcttcatcta gctttttcag taatttaaat tttatattgt tgattctcgt
    15841 gcaagagtcc aatctcccaa gtttacaagc tttttggaaa agcaataaag ctttgtttaa
    15901 attcaaagga agtctcgtgt ttgctgcaaa ttctcttcct aaataagcac atgcggtggc
    15961 attattttct aagcattgtt tttgaaaaag acttaaatca ccctcgaaaa aatattcccc
    16021 ctttggagta agagcaaaat tttcctttaa gggctgattt aaaatttctt ttaaactctc
    16081 gtccaagaat tgattaatgc ctaaattttc ttttatattt tggggtaaat tatttgctaa
    16141 aacagaaaat tgacaaaaaa atattaaaaa aactaaaatt ttaatttttt ttcatgagta
    16201 tttctttctt gcctattttt ttaaaattat aacagaattt caaagtttgt aaaactaaaa
    16261 tttgttataa tcagcccaaa tttatgctct taggaaaatt catgccaaaa cgaacagata
    16321 ttaaaaatat tttacttata ggaagtggtc ctatcgttat aggtcaagct tgtgaatttg
    16381 attattcagg aactcaagca gcaaaaactt taaaagaaca agggtatcgc gtagttttaa
    16441 tcaattctaa cccagcgact attatgactg atcctgaatt tgctgatgct acttatatag
    16501 agcctgtaac caaggaaagt attttaagta ttattaaaaa agagaaaatc gatgccattt
    16561 tgccaaccat gggtggacaa gtggctctaa atgtagctat ggaagtttat gaaagcggac
    16621 ttttaggtga tgtgaagttt ttgggtgcaa accctgaagc gattaaaaaa ggcgaagatc
    16681 gtcaagtttt taaagaatgt atgaaaaaaa tcggcatgga tttgtcaaaa tctatgtacg
    16741 cgtataatta tgatgaagct ttaaaagctg tagatgaaat cggctttcct ttaatgatcc
    16801 gtgcttctta taccttaggt ggtgcgggaa gcggtgtggt ttataatatg gatgaattta
    16861 aagaactcgc taatgccgcc ttagcacttt cgccaatcca tgaaattctt atcgaagaaa
    16921 gtttgcttgg atggaaagag tatgaaatgg aggttatccg cgataaaaat gataattgca
    16981 ttatcgtgtg tagtatagaa aatcttgatc ctatgggagt gcatacagga gatagtatca
    17041 cagtcgcacc tgctcttact ttaactgata aagaatacca agctatgcgt aatgcttctt
    17101 ttgctatttt gcgtgaaata ggtgtcgata cgggcggatc aaatgtgcaa tttgctgtca
    17161 atccaataaa tggtagaatg atagttattg aaatgaatcc aagagtttca agatcaagcg
    17221 ccctagcttc taaagcaacg ggttatccta tagcaaaggt tgcaacactt ttggcagtag
    17281 gctttagctt agatgagatt aaaaatgata ttacaggaac gcctgcttct tttgagcctg
    17341 tgattgatta tatagtaaca aaaattcctc gttttacctt tgaaaaattt ccaggagcaa
    17401 atacaacttt aggcacagcc atgaaaagcg tgggtgaagt tatggcgatt ggccgaactt
    17461 ttaaagaaag tatacaaaaa gcactttgtt ctttggaaag aaatttaagt ggttttgata
    17521 gagtgaaatt tgaagataaa aacgatcttg tttttaaaat tcgcaacgct aacgaaaagc
    17581 gtttgcttta tgtagcgcaa gcttttagag agggttttga tgtaaaagag ctttatgagc
    17641 tttgtaaaat tgatccttgg tttttaacac agattaaaga aattgtagat tttgaagaac
    17701 aaattgatat ggatatcttg cataacaaaa cccttttaag aaaagcaaaa actatgggtt
    17761 tttcagacaa gatgatcgcc ttgcttgtga atctaaaaga taatttagaa ttaagtcaaa
    17821 atgatatcta ttatgcaaga atgaagcaaa aaatcatagc agaatttagc gaagtagata
    17881 cttgtgcagg ggaatttgaa gctttaactc cttatcttta ttctagtatc aatgtaagtg
    17941 aacttactca aagcaaaaat gaagcaagag ataaaaaaga aaaaaaagtg atgattatag
    18001 gtggggggcc aaatcgtata ggacaaggga tagaatttga ctatgcttgt gtgcatgctt
    18061 cttttgcatt aaaggattta ggcgtaaaaa ctattatgta taattgcaat ccagaaaccg
    18121 tttcgactga ctatgataca agtgatattt tgtattttga acctattgat tttgagcatt
    18181 tgcgtggtgt aattgaacgc gaaaagccag atggaattat agtgcatttt ggtggtcaaa
    18241 ctccgcttaa atttgctaaa cgcttgagtg cttttggggc taaaatcata ggcacaagcg
    18301 caagagtgat cgatatggca gaagatagaa agaaatttgc tgaatttatt acaaaacttg
    18361 gtatcaatca acctaaaaat tctaccgcta caagcgtaga agaagcggtt ttaaaagcga
    18421 gcgagatagg ttatcctgta cttgtaagac caagttatgt tttaggcgga agagctatgc
    18481 gtgtggttac tgatgagagt gaacttagac tttatatgca agaagctgtg gatgtaagcg
    18541 ataaaagtcc tgttttgatc gatcagtatt tagataatgc gactgaaatc gatgttgatg
    18601 ctatcagtga tggtaaagat gtttatgtag caggaattat ggagcatatt gaagaagcag
    18661 gaattcattc aggtgatagc gcatgttctt tgccaccttg caatattgat gaaaaaatgc
    18721 aagaacaaat cgtacaaaaa accgcagata ttgctttaaa tttaggcgtt gtaggacttt
    18781 taaatataca atttgcaatt tacaataacg aactttatat gatagaagta aatcctagag
    18841 caagtcgtac cgtacctttt gtaagcaaag ctacaggtat acctttggca aaagttgcaa
    18901 cacgcgtaat gtggcagggg aatttaaaag aagctttaaa attttatgat gcttttggtg
    18961 tggtgaattt tgacaatgcg attttacgtc ctaagccttc aaaatatatc agcgtaaaag
    19021 aagcggtatt tcctttttct aagcttagtg gaagtgattt agagctagga cctgagatga
    19081 gatcaacagg tgaggttatg ggcataagta aggattttgc taattcttac gcgaaaagtc
    19141 aaatttcatc ttttaatcat ttgccagaaa gtggagtggt tttcatttct ttaaaagaaa
    19201 aagataaaaa gtatgctaaa aaacttgcga gtgaatactc taaattaggt tttaaactaa
    19261 tggctacaag tggaacttgt aaagaaattg tagaaactgg ttttgagtgt gagcttgtac
    19321 ataaaatttc agaagggcgt ccaaatgtgg aagacaagct gaaaaatgga gaaattcagc
    19381 tagtgataaa tacaagtgat agtcatactt ttgcagggga tacgaaaaaa attcgtgaaa
    19441 atattatccg ttttaaaatc ccttatttta caaatttgcg ttcagctctt gcgggtgcaa
    19501 aatcgattaa agcgatacaa aatcaaagtt atttagaagt taaaagcctg caggagtggc
    19561 ttaagtgaat ttaaaagaaa aacctatttt tatcagcaaa gataaaaatt ttacccttta
    19621 tcaaaatgat tgcaataaat tattgcctaa atttgaaaaa caatttgatt tgatttttgc
    19681 tgatccgcct tatttccttt caaatgatgg attaagtatt caaaatggta aaatagttag
    19741 tgtaaataaa ggaaactggg ataagggtga cgatattgaa aaaatagata aatttaattt
    19801 aaaatggcta tctaatgcaa aaatagcgct aaaagatact ggaagtattt tgattagtgg
    19861 gacttaccat aatgttttct cacttggtag aattttacaa aaacttgatt ttaaaatttt
    19921 aaatatcatt acttggcaaa aaacaaatcc tccaccaaat tttagctgcc gctatcttac
    19981 gcattctaca gagcaaatta tttgggctag aaaaagttat aaacacaagc atatttttaa
    20041 ttatgaaatt ttaaaacttt taaacagtaa taaacaaatg cgtgatgttt gggcttttaa
    20101 tgctattgct ccttgggaaa aaacaaatgg aaaacacccc acacaaaaac ctttggcttt
    20161 acttactaga cttattttaa tggcaagcga tgaaagctca ttaatctgcg atccttttag
    20221 tggaagctca actacaggca ttgcagcaaa tttattaaat agacaattta taggttttga
    20281 gaaagaaaat gaatttatca acatatcaat agctagaaag aaagaactag aaaataattt
    20341 taatactatt aaaaataaaa ttaatgattt aaaattatta aataaaaaca gtttatttca
    20401 aggaggttat ttatgattac gggcggaagt ggcggaagca atactcgaac tggattagta
    20461 tttgagggac aagtggattt agcaactttt ttgtcgcaac aaaatggtta tactcttaat
    20521 gaaaaacaag aagtcttttt taataatgaa aaagtagcaa gaatttttaa aaaatacaaa
    20581 ctttatgaat ttttagaaga gttgaagatt aattggaaag agtgtatttc taaaaaactt
    20641 ttgccagatg atagtatcta tgtaattatt aacaatactt tgcatattat tgagtgtaaa
    20701 tttcaaagtg tggctggatc tgtagatgag aaactacaga cttgtgattt taagaaaaag
    20761 caataccaaa aactattttc tagggcaaat atcgaagtag aatatattta tcttttaaat
    20821 gattggttta ggaaacctga atataaagat gttctagact atattattag tgtacgctgt
    20881 caatattatt ttgagtatat tcctttacaa aaattaggct tgccagttcc ttgatgattt
    20941 atctagcgca aacagatact acagcaggat ttttaagtaa aaatttagaa gaaatcaatg
    21001 ctttaaaagg cagggctaaa gatcagccct gcttgatcac ttctgcaaaa tttgacgagt
    21061 taaaaaaaat cgtaagagtt ccaaatcaat ttaaaaattg ggtgcgtcgt gccaaaaaaa
    21121 caacttttat ttatccaaac aatcaagcag taagaattgt caaagattgc aaacacgcac
    21181 aattcttaga aaaaatgggt tgtttttatt caagttctgc aaacaagcac ggacaaaaat
    21241 ttgatgagct ttgggctaga agtgtcgcag atgttgtggt tgatgagata tttgttgaaa
    21301 ataccccatc aaaaataata aaacttcatc gtaagaagct taaaaaaatt cgttagttta
    21361 gtgcttgtaa aatttcttca aaagctatgc aaaattgctc taaaccatct tttagtaatt
    21421 catcacaagc tttttctctt tcattttgtg aaataatagc attaagttgt gtgtaaattt
    21481 caaaattcat taaaggtttt ttaaattcaa tttcggtttt aaatgcattg atagcatcta
    21541 gtggggcagt atttatgcta ttttcaaaaa gaagttcttt gatataataa tcttttggta
    21601 aatcatcgcc ttttacaccc gtgcttgcaa ataaagctcg gatattaggt tcgtttttgg
    21661 agatgatatt attataggct aaatttgcat ttaaaattcc tatacgattt tgttcttttg
    21721 ctttagaatt taaaagtcta tcaaaacgac ttacaaagat gcttataaca gcttgcggag
    21781 ttcttaagtg agtatttttt ccttgcaagg ctatattgtt ttttctaaat tcaatcaaac
    21841 ctgcatttaa agcttcaaag catttttggc tttgctctaa agaaaaaatt aaagtagcat
    21901 ttacgctgat gccatttttc atcaattcat acattacttc ataagaagca ttggttgctg
    21961 gaactttaat catcacattg tctttaccaa tggcactata aagttttttt gcttcgccca
    22021 aacttaagct tgtattatca taaaatctcg gatcgatttc aagacttata aaaccatcat
    22081 ttcccgtgtg atataaagga gcaagcttgt ctgctgcttt ttgtatgtca gcaatagcaa
    22141 gttcttcata aatttctttt gccttttttc cttttaattt ggctattttt tctttgtaga
    22201 taggcgaatt taaaatagca tttttaaaaa tagcgggatt tgaagttgct ccattgacac
    22261 cgcgagatag taaatttaaa aaatcatcat ctaaaaaact attttctata aaatcacacc
    22321 aaagagaaaa ttttttcatc ttatattacc tttattattt ctttcaagtc tttattgtct
    22381 acgcaaatat ctgcttttga tcgcaaaatt tctttagcac aaaatgcgac ttttaaaccg
    22441 ctttcattaa acatagcgat atcgtttgct ccatcgccca cacacatgac ttcatgagtt
    22501 tgcaaattta aaaagttctt gaggcgttgc agcattaaac cctttgaatt tgaaaacatc
    22561 atttctccgc ccactagtcc tgataaagta ttatttttat gatgtagata atttgcaaag
    22621 cctaaattta cttttagttt tttcatagca ggatcaatac cttcatgaaa acccccacta
    22681 aaaataacaa caaaaatatt tttagaattt aaaaattcaa taagctcata agctccattc
    22741 atcaatggaa gatcttgtcc tattttaaga acaagatcat aaggcattcc ctttagaaaa
    22801 ctgacacgct cttgcagact ttcaaaaaaa tcaagttcac ccgccatagc gcgatgagtg
    22861 atatccacca cttctttttc tttgtcgtaa gccttagcta atatatcaat agtttctcca
    22921 tccatcaaag tggaatcaaa atcaaaaaca caaagtttta tcattaaaat tcacgcttaa
    22981 gtaaggcttc aactttaagt atggtaagga tattttcatc tcttttgcct ataccataga
    23041 tcataccctt atcttttacc aaagtttcag gtgg
//
LOCUS       DARAII010000015        21954 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.015, whole genome shotgun sequence.
ACCESSION   DARAII010000015 DARAII010000000
VERSION     DARAII010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21954)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21954)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21954
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.015"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1619)
                     /locus_tag="SB143_000498"
     CDS             complement(<1..1619)
                     /locus_tag="SB143_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEF9749063.1"
                     /translation="MCNMLDNKLRNRLRVDFSNISKQIEIPNLLQLQKASFDYFLNLE
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGIKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVVNKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPSDFMDRIEYDIKDEKGNIIHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     EIANDLANGVDAAIINSFAQDNETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVT"
     gene            complement(1730..2107)
                     /gene="rplL"
                     /locus_tag="SB143_000499"
     CDS             complement(1730..2107)
                     /gene="rplL"
                     /locus_tag="SB143_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEF9749064.1"
                     /translation="MAISKEDVLEFISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     AAGGAAAAAEEKTEFDIVLVDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKADAEEAKKQLEEAGAKVELK"
     gene            complement(2125..2604)
                     /locus_tag="SB143_000500"
     CDS             complement(2125..2604)
                     /locus_tag="SB143_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEF9749065.1"
                     /translation="MTRSEKVEIIAKLQEEFKISEAIVVCNYKGLSTKKLEELRNNAR
                     ENNVKVQIIKNTLANIALNNSGKTGLVLKDTNVYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVRALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(2753..3454)
                     /locus_tag="SB143_000501"
     CDS             complement(2753..3454)
                     /locus_tag="SB143_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEF9749066.1"
                     /translation="MAKITKRLKELSQKIDVSKEYALNEAIETVRNLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLIE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNISTFIKAINKHKPAAAKGRYIKSAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(3512..3937)
                     /gene="rplK"
                     /locus_tag="SB143_000502"
     CDS             complement(3512..3937)
                     /gene="rplK"
                     /locus_tag="SB143_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEF9749067.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(3963..4496)
                     /gene="nusG"
                     /locus_tag="SB143_000503"
     CDS             complement(3963..4496)
                     /gene="nusG"
                     /locus_tag="SB143_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEF9749068.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFAHLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(4510..4689)
                     /gene="secE"
                     /locus_tag="SB143_000504"
     CDS             complement(4510..4689)
                     /gene="secE"
                     /locus_tag="SB143_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEF9749069.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWIMSSIVSAIV"
     gene            complement(4708..4783)
                     /locus_tag="SB143_000505"
     tRNA            complement(4708..4783)
                     /locus_tag="SB143_000505"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4748..4750),aa:Trp,seq:cca)
     gene            complement(4795..4953)
                     /gene="rpmG"
                     /locus_tag="SB143_000506"
     CDS             complement(4795..4953)
                     /gene="rpmG"
                     /locus_tag="SB143_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEF9749070.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNGKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(5006..6205)
                     /gene="tuf"
                     /locus_tag="SB143_000507"
     CDS             complement(5006..6205)
                     /gene="tuf"
                     /locus_tag="SB143_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEF9749071.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGIVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(6266..6340)
                     /locus_tag="SB143_000508"
     tRNA            complement(6266..6340)
                     /locus_tag="SB143_000508"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6306..6308),aa:Thr,seq:ggt)
     gene            complement(6436..6512)
                     /locus_tag="SB143_000509"
     tRNA            complement(6436..6512)
                     /locus_tag="SB143_000509"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6476..6478),aa:Gly,seq:tcc)
     gene            complement(6519..6604)
                     /locus_tag="SB143_000510"
     tRNA            complement(6519..6604)
                     /locus_tag="SB143_000510"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6568..6570),aa:Tyr,seq:gta)
     gene            complement(6665..6740)
                     /locus_tag="SB143_000511"
     tRNA            complement(6665..6740)
                     /locus_tag="SB143_000511"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6705..6707),aa:Thr,seq:tgt)
     gene            complement(6875..7612)
                     /locus_tag="SB143_000512"
     CDS             complement(6875..7612)
                     /locus_tag="SB143_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEF9749072.1"
                     /translation="MSILKIKNLQKYYGFHHALKNINLEVKQKEVVVILGPSGCGKST
                     LLRCINGLEEIADGVIEIGQDKIDKNFKDWTRVRQKVGMVFQSYELFEHLSVKDNILL
                     GPLKVQKRAKEEVLQEAKIWLEKVGLAHKIDAYPKELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVILNLAKDGMTMLIVTHEMGFARAVADRIIFMDNGEIIE
                     ENTPDGFFENPKSERAKKFLNLFDYHK"
     gene            complement(7614..8270)
                     /locus_tag="SB143_000513"
     CDS             complement(7614..8270)
                     /locus_tag="SB143_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEF9749073.1"
                     /translation="MFDLLNPDTLSRLWKGLYITLEISIVSIIITSFGGLFLGILMSL
                     KNRYIYILCRFALEFVRVMPLLVWLFMVYFGLSRWLGINLSSVSSAIIVFSIWGSFEM
                     MDLVRTSLKSIPKHQYESAASLGLNKAQSYFYIIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFNNKNDLAPFIIYGLIFFIFFLICYPVTLYSKKLEKKWS
                     "
     gene            complement(8263..8964)
                     /locus_tag="SB143_000514"
     CDS             complement(8263..8964)
                     /locus_tag="SB143_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEF9749074.1"
                     /translation="MDFDFILANSNAFIAAAWLTLKLSFFGIIFSIIIGFFCILMSYF
                     KITIMEAFCKVYIEFSRNTPLLIQLFFLYYALPKFDIHLEQIPPLNLICLSVDEALRP
                     AFACAIVGLSFLGGSYMAESFRAGFEAIKKQQFEAGLSLGFTKLNNLRYVIMPQALGV
                     CLPGISANIVFLIKETSVVSIIALPDLVTVMKGLNSLTYKTDELLLLLFLGYLCIILP
                     ISLFLFFLEKRFSNV"
     gene            complement(8975..9571)
                     /gene="nssR"
                     /locus_tag="SB143_000515"
     CDS             complement(8975..9571)
                     /gene="nssR"
                     /locus_tag="SB143_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HEF9749075.1"
                     /translation="MQEYLDFLKGIGKIRKFEKNNILFFEGEKALKFFILLKGRVRVY
                     KSTAGEKEITLHYFTPPNFIAEMPTFKRLRYPANAICEEYCEILEIDFEDFETLCSQN
                     KEFNFLLISSLFEKIKILEKKLLENSLDLKSKLARYLLENEKNLAQISQRQIAVDLSV
                     RAESLSRILKEFKNSELIETKKGKIEILDKEGLKKGLW"
     gene            9653..10039
                     /gene="ctb"
                     /locus_tag="SB143_000516"
     CDS             9653..10039
                     /gene="ctb"
                     /locus_tag="SB143_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEF9749076.1"
                     /translation="MKYETINQESIAKLMELFYDKIRKDKDLGPIFNNAIGTSDEAWK
                     EHKAKIGNFWAGMLLGEGDYIGQPLKKHLDLPPFPQEFFGIWLGLFEESLDKIYNNEE
                     MKNVILQRAQMIASHFQNMLYRFGGH"
     gene            complement(10042..11856)
                     /gene="recG"
                     /locus_tag="SB143_000517"
     CDS             complement(10042..11856)
                     /gene="recG"
                     /locus_tag="SB143_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEF9749077.1"
                     /translation="MKIKENDFDFFKKLKIKSAIDLALILPKKIENLSPSKTPKENEL
                     CTQKIIIKSIHSKKGQLFGLGFCKEWSQDISFVFFHPRAWHFGICKIGKELILNGKLT
                     RFGHVWQFNNPKILTSFAGFAPKYQIQGLQDKKISEFIHKYLNYENLKESGIEDKYIH
                     FLLNLHTYDEKSFLMFENLERFEKDLKYIEIYNFLKRLKAKKSHFKAYEIEIFNIANW
                     LKNLPFSPTRDQLNALKDIEQDLGSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILANQLYEEAKKLLPEFVDILFIKGGKKEKDLEEKIKKANLIIGTHALIHLQ
                     SHNAVLVMIDEQHRFGSAQRQQIYSLNENELAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKEMPFKKDITTLCIQNEGFAKLSEKIKEEIAQNHQIIIIYPLVNPSDKIPYLSLEQ
                     ARRYWEDNYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSTIVIVG
                     AERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDGFKIAELDLKNR
                     LSGDLLDGFIQHGNEFKYFDFSKDEYILEKAKKDLMEI"
     gene            complement(11846..13066)
                     /locus_tag="SB143_000518"
     CDS             complement(11846..13066)
                     /locus_tag="SB143_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEF9749078.1"
                     /translation="MQNLEVSRVKIPFIFEENNDFPIVILKLVFRNCGRSYDEIAGLA
                     KMFARILNEGVDDSFFKELEFKAVNLEASSGFESLEINLSCLKENFEFALKHLENLLL
                     NPRFEEKILEKLKINALGELASKNSDFDYLAKNLLNSEIFECKEFQSPNDGDEKSIKQ
                     ISLSDLESFYKKNINLSNLVVILGGNLAQEKAKGLLNKLLAKLQKGSQNSQKTYEINS
                     KNKDIIQIRKESEQAYIYFAAPFFTKFNDKDFYLAKIALFILGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNASFTRVFGYLQTKNESAKEAKKIVKEVFRDFVKEGVSQNELVQA
                     KNFLIGSTPLRYESLSRRLSISFNEYYQGLPKGYYKEELKLIEKVELQELNAYIQKHN
                     EILDLNFASIANEN"
     gene            complement(13066..14112)
                     /locus_tag="SB143_000519"
     CDS             complement(13066..14112)
                     /locus_tag="SB143_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEF9749079.1"
                     /translation="MKRLDKEEALYLLRNANLAELGEIAYQRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISISEVLQRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRRAHEIGMKSTATMMFGTVESDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSENTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIKSLGEN
                     PAKRNTAYEILERF"
     gene            14184..15371
                     /locus_tag="SB143_000520"
     CDS             14184..15371
                     /locus_tag="SB143_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749080.1"
                     /translation="MNYIDLLKNNKNIRILTLVQFIVYFGAWFSQTGVFTLLVSLNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELVSIFCLIFVTSLSML
                     WLLFILIFVRLCVASIYFQAEMSLLAKILNPKELKLANEMHSVIWAVSYTASMASAGI
                     FINFFGIKAAFLFDCCLIIIGILFLTKLHIPHFKQKIQNKFFILIKEGFLYVLQNKII
                     LHLIILHAFIGLTAYETLVTLLAQHEYKEVLSAALVIGFLNAIRALALAFGPIFLSKI
                     TNNKNVFFLYLGQGLGIILWALTQFNFYISFIGLIAAGFCTSSLWAYTYTMIQKNCDK
                     TYYGRVIAYTDMVYLSFSALISQLMGLLFEQGFKLAIITALLGVVFIFAAFYWRWFDK
                     KYL"
     gene            complement(15398..16486)
                     /gene="nusA"
                     /locus_tag="SB143_000521"
     CDS             complement(15398..16486)
                     /gene="nusA"
                     /locus_tag="SB143_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEF9749081.1"
                     /translation="MERIADIIESIANEKNLDIESVKEKVIIALINTAKRIYGQEYDF
                     FVDRKNLNLYQKITVVADNDERLNENKESYIEFSKAKKEAPDVEIGDELTYECSLENL
                     GRTAVNILHKELEYHIQKLLEQTIFEKYKNKVGQMVFGNVVRIDNEENTYIEIDELRA
                     FLPRKNRIKGEKFKVGDVVKAVIRRVYTDKGIKMELSRTSPKFLECLLEAEVPEIKDG
                     YVSVVKCARIPGERAKIILQANGANIDPVGATVGVKGVRINAVSKELHNENIDCIEFS
                     NEPEILIARALAPAIVSSVKIENEKAIVTLNSEQKSKAIGKSGINIRLAGMLSGYEIE
                     LNEVNARTTSNTLSNEEALKNLQDLFKI"
     gene            16611..16853
                     /locus_tag="SB143_000522"
     CDS             16611..16853
                     /locus_tag="SB143_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749082.1"
                     /translation="MDLKLARNLINEEPKNISLAKIEEAVNQEGQKFFYFDKENSHKD
                     LIALVEHFEKKGLSVYHRTIRYGLDSNDFMYEVHIL"
     gene            16850..18151
                     /gene="miaB"
                     /locus_tag="SB143_000523"
     CDS             16850..18151
                     /gene="miaB"
                     /locus_tag="SB143_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEF9749083.1"
                     /translation="MSSKKLFIQTLGCAMNVRDSEHMIAELTQKDNYTLTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKSGAKIGVCGCTASHLGSEIFRRAPYVDFVL
                     GARNISKITQAVNTPKFMSVDIDYDESEFAFGDFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPLNIIYKEAQKAVDKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFAKNPKVCKSMHMPLQSGSSQILKAMKRGY
                     TKEWYLDRALKLRELCPNVSISTDIIVAFPGESDKDFEETMEVLEKVRFEQMFSFKYS
                     KRPLTKAATMPNQIDEEIASNRLSTLQARHNEILDDIVKKQENKTFKVLFEELRAGNA
                     IVGRTDNNFLVQVEGSEELLGTFKEVKITNAKRMVLYGEII"
     gene            18135..18758
                     /locus_tag="SB143_000524"
     CDS             18135..18758
                     /locus_tag="SB143_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEF9749084.1"
                     /translation="MGKSFKIAFIARLVFILQWLIFLTCKKTYKGDKVDQISNVILFW
                     HGRLALMPFAFRHFGKKGKKAYVMISHHRDGEQIARIIKLFGLDTVRGSTSKGASTAL
                     RSAFKILDENHDVVITPDGPRGPYHSISDGAVLLAQKKNVKIRILNYEARNFWEFKSW
                     DKMILPKPFTHLVYRLSEPLDISSLDKDQAKFFLLEHFKKIEQMDKF"
     gene            18767..19753
                     /locus_tag="SB143_000525"
     CDS             18767..19753
                     /locus_tag="SB143_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEF9749085.1"
                     /translation="MLFLLKKILPQLFTSIILEDKKNILKTSIYKNHKLISSNEKTFD
                     KSEKLLEYVKTLNSKFLFYHTALFLNVKEQGLIPSKNDKDFERFNVGKMSLKSIALNN
                     ALIYTATEHIEYFNELFEDYGGLDFLYSPFAILYHNILKEKLNSDKITLYAYKHEHIL
                     TLIICRGIEILYGDIIFFEEELDLEFGHQEENLDNLGEDTLNDTEVTLDNFNETLEDK
                     LKALDQFDNILGNNENDSEFLDGKDKFDLEEMDQFGNDIELCRHIVTSIEKFYKDDKY
                     PSAFIDKALILSTKELDQSAIEFLEEETLLEIESKPINTLDSIIELMQKELQ"
     gene            19750..20274
                     /locus_tag="SB143_000526"
     CDS             19750..20274
                     /locus_tag="SB143_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749086.1"
                     /translation="MKSYSFIQSRKKPIFTLFDKIWFGLFSFGIVFIFAVYFLYLTQI
                     ALTHNFIEEQKEQVLQFQNKTQENGKLYDILLEQSKIANTFHTQNQAFKNSLKNLFDI
                     IVKTDGITLESIEQEENSLKLIGVTPTKEMFALLLETPLKSIFDQSFTTYYRLNNGWY
                     RFISISKQNSGVLQ"
     gene            20271..20789
                     /locus_tag="SB143_000527"
     CDS             20271..20789
                     /locus_tag="SB143_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749087.1"
                     /translation="MKDKSLEELNILKIVIYVLSFITVCTALILFLLLPVLKDYKQTH
                     LRKNSQAAIFNAAKAKLDASENKISALRTENNKSLEQFEQQFNLTHFQNFLEKYFENI
                     QITELKLDKKEKYLTHRINIRASINNPRRLYDFIDALAQYNNLVKIDYPMTLKASDHG
                     IMINLNVQIYSN"
     gene            complement(20781..>21954)
                     /gene="thiC"
                     /locus_tag="SB143_000528"
     CDS             complement(20781..>21954)
                     /gene="thiC"
                     /locus_tag="SB143_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEF9749088.1"
                     /translation="IIPANINHKSLDPNGIGLGLRTKVNVNLGVSNDCVDYSEEMKKV
                     ELAHKFGIEAIMDLSNYGKTSRFRDELIAVSKAMIGTVPVYDAVGFLEKDLKQISARD
                     FLDVVYHHAKSGVDFMTIHAGINSRAARVFKESKRLTNIVSRGGSVLYAWMAMKEAEN
                     PFFEYYDDLLEICLKYDVTLSLGDALRPGSTHDASDAAQISELIELSLLTQRAWEAGV
                     QVMIEGPGHMAINEIEANMQIEKRICKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAA
                     AAGADILCYVTPAEHLRLPNLNDVRDGIVATKIAAHAGDLAKLPKERKRDDEMSKARQ
                     DIDWEKMFKLAIDGEKAKKMFNERRPDDLNSCSMCGKMCAMNTMNQVLKGENVSLV"
BASE COUNT         7276 a         3928 c         3057 g         7693 t
ORIGIN      
        1 gtaacctcgc ttaaagggtt ggtttgatcc ataaattgcg aaagctgacc tcctgtaaaa
       61 aattcaatga tagttgtagt aatcatttta ggattgatta aatcataagg cattacttta
      121 tcaagatccg catttaaaga agtaaattta tctctgatcg ccttttgcat ttttgcaaga
      181 cctaaatgaa gttcattggc taaaagttca cctatagaac ggatacgacg atttcctaaa
      241 tgatctctat catcaatatg tcctttacca ttttttactt taattaaata ttttgcagtt
      301 ttgataatgt cttcattggt tagaactgtt acatattctg gaacttcaag tcctagttta
      361 tggttcattt tcatacgacc tactttagta agatcatatc tttcaggatt aaaaaataaa
      421 tcattaacaa aggctttagc cgcatctttt acaacaggct cacctgggcg cattacttta
      481 taaattctaa tagctgctaa atcattttca tcatcgatat tttcactttg ttttaataat
      541 tttaaagttt cattatcttg tgcaaatgaa ttaataatag ctgcatccac tccatttgcc
      601 aagtcattag ctatttcaaa acttttttgc tctttaattt tagcaagttt gctttcatca
      661 agtaaggtta gagagtcaaa taaaacttcg ccactttctt tatcaataat aggattggct
      721 agataacgat ttaacaaaat ttctactgga tattctatcc attttaagcc atctttaata
      781 agctgttcgg cttttttctt ggttaatctt ttaccggctt gatggataat attacccttt
      841 tcatccttga tatcgtattc tattctatcc ataaaatcac ttggattaaa ttctgttaaa
      901 aatttatctt ttttaacgtg aatagtctga ataggataaa ataatttaat aatatcttgt
      961 tttttatatc ctaaagctct aaaaagcatt gttactggaa cttttcttct tttattaatc
     1021 cttacataca atacatcctt agcatcatat tcaaaataaa gccaagaacc gcgatcagga
     1081 ataatttgag cagtgtatac aagcttatta acaacagtcg agctttcttc ttctttgaag
     1141 attacgcctg gacttctatg aagctgatta actacaactc tttcaacccc attgataata
     1201 aaagaaaccc tatctgtcat caatggaatt tctcttatat aaatttcttg ctccttgata
     1261 tcttttatac caactttttc acctgttttc tcatctttct catgtaaggt aagacggatt
     1321 ttcattttta aatttacaga gtaagtcaaa cctctttcca tgcactcacg aattgtgtat
     1381 tttggttttc caatttcgct actaacatac tcaagactta acctattttg tggatcatgg
     1441 ataggaaaga ttgatttaaa tactttttct attccacttt caccattttc aagatttaaa
     1501 aaataatcaa aacttgcttt ttgaagttga agaagatttg gaatttctat ttgctttgaa
     1561 atattggaga aatctactct taaacgattt cttaatttat tgtctaacat attgcatata
     1621 cctcgtggta aattttgtaa atttaaaaaa gaagacctaa tatctaggta aaaaataaaa
     1681 aagaagactt acttaaataa gcaaatcttc ttaaactttt aaagcttaat tacttaagtt
     1741 ctactttagc accagcttct tcaagttgtt ttttagcttc ttctgcatca gctttagcca
     1801 cgccttcttt taaggttgaa ggtgtttgct ctactgcatc ttttgcttct ttaagtccaa
     1861 gaccagttaa agcacgaacg attttaatta cttcgatctt tttagcacca ccatcaacta
     1921 aaacgatatc aaattcagtt ttttcttcag ctgcagctgc tgcaccacct gctgctgcac
     1981 cacctgctac cattacagga gcagcagata caccaaattt ttcttcaaat tcttttacaa
     2041 gctcagaaag ctcaagaaca cttaaatttg aaataaattc taatacatct tctttagaaa
     2101 ttgccatttt ttatccttta tttattattc agattctttt ttatttttaa gcgcatttaa
     2161 accaatagtg aaattggtaa ttggcgcatt ccaaacttgc aaaagcatag caagcaactc
     2221 gttgcgagaa ggcatttttg ccaaagctct aaccttagca acatctgcaa cttcgccttc
     2281 aatatgagca gttttaattt caaatttatc attattttct tcaaatttag ctgctacttt
     2341 tgaaacgcta agttgatcct cgccccaaag ataaacatta gtatctttaa gaaccagacc
     2401 tgttttaccg gaattattaa gagcaatgtt agccaaagtg tttttaataa tttgaacttt
     2461 tacattgttt tctctcgcat tatttctaag ttcttcaagc tttttagtac tcaagccttt
     2521 gtaattacaa actacaattg cttcgctaat tttaaattct tcttgaagct tagcaataat
     2581 ctcaactttt tcgcttctag tcacattttc tcctttccga ctgagatttc aagcagagtg
     2641 gttttaccca aattaagctt tcgcctcgac tatcttcaat ctaaaataaa catctcaaaa
     2701 aataaaaatt ttttcagatg tttatttaaa aagagttgca ttatagcaac tcttacttca
     2761 tatcaagtaa ttcttgcgtt tcaagtttta cagaaggact cattgttaaa gacaaagctg
     2821 cgcttttaat atatctacct ttagctgctg caggtttatg tttattaatc gctttaataa
     2881 aagtagaaat attatcccaa agttgctctt tagaaaaact tacttttcca aggcctgcat
     2941 gaatatttcc ttgtttgtct acacggaaat ttacttgtcc gcttttagca ttattaactg
     3001 cttgagctac atccatagta actgttccgg tttttggatt tggcattaaa cctttaggtc
     3061 ctaagattct acctacttta cccacaagac ccattaaatt aggagttgcg attaatacat
     3121 caaaattcat attgcctttt tgaatttctt ctatcaagtc atcacttcct acaatatctg
     3181 ctccagcatt ttttgcttca tctgccttag catcttttgc aataacagct acacgaactt
     3241 ttttacctgt tccagcagga agtacaacag aacctctaac catttgatct gcatgtcttg
     3301 gatcaacatt caatttaagt gcgatttcaa cagtttcatc aaattttgca gattttaaat
     3361 ttcttactgt ttcaattgct tcatttaaag catactcttt gcttacatca attttttgtg
     3421 ataattcttt taatctttta gttattttag ccatatattt ttctccgcat ttttaaagtg
     3481 ctaccgcttt ttaccttagc ggtaaaaggt tttaatctac gatttcaaca cccatagagc
     3541 gagctgaacc tgcaataatt ttcgcagctt gatctctatc cttagtattt aaatctgcaa
     3601 tttttttatc aacaatttct aaaacttggg cacgagttaa tttacctacc ttgttcttaa
     3661 gtggattatc tgtaccttta gaaattccag ctgctttttt aattaaatct gtagcaggtg
     3721 gctgttttgt aataaaagta aagcttttat cagcataaac agtaataaca acaggaatat
     3781 taaatcctgc catatccttt gttctttcat taaaagcttt acaaaattcc atgatattta
     3841 caccttgctg acccaaagca ggacctacag gtggtgatgg attagctttt gtagctgcaa
     3901 tttgcaattt aatttcgcct acgacttttt tagccataac aaatctcctt acttgatata
     3961 aattaaatta ttttctcaac ttgagaatac aagatctcta ctggagtaga acgtccaaaa
     4021 atagaaacat taagttttaa taatccacga accatatcgt attcttctac tatagcagta
     4081 aagtttgcaa atggaccttc agtaattctt acattttctc cttcttcaaa agagatttta
     4141 ggttttggag cagcacgatt atgcactttt tccaaaatta aattaatatc tttttctgtt
     4201 aaaggagtag gtttttttga ttctccaata aaacgaccaa cttttggaag agattgaatg
     4261 cgatgccaaa gttctgtatt taaatctaga tgtgcaaaaa catacccaga atacaaactt
     4321 ctttcactta tcttctcttt tccattttta aattcaataa catcttcagt cggaacaact
     4381 atttctttta gttgctcttc gattccatta tcttttacta aattttcaat ggctctttta
     4441 actgccattt cgctaccagc ataagtttgg attgcatacc atttatgagt actcaaattt
     4501 tgttctcctt tatacaatcg cagaaacaat agaggacata atccaatcca ctaacgccaa
     4561 aaacaaagaa ataaccgcaa ccactacaaa aactgtaata taagcatttc ttacctgttc
     4621 ttttaaagga aaaattactt tccttaattc ggcttttgat aatttaaaat aagttattaa
     4681 tttttccatt tatttaaacc ttaattatgg cagggcaaga gggattcgaa cccccaacca
     4741 tcggatttgg aatccggtgc tctaccgttg gagctattgc cctagggcat aagcttaact
     4801 ttttagctta acttctttgt gaagtgtgtg tttttttaat cttgggcaat atttttttaa
     4861 ttccaatttt tctgtagtat ttttgccatt tttataggtg ctataattaa tatcaccaca
     4921 ttcttcacat tttaaaccaa ctttaattct catttatatt ttccttaaaa aatttaaagc
     4981 caagtattaa acttggcttt taaaattact taataatttt agaaacaaca cctgaaccaa
     5041 cagttttacc accttcacgg atagcaaaac gagtaccttc ttcaagcgct actggtgcaa
     5101 tcaagcttac agtaattctt acattttcac caggcataac catttcaacg ccatcagcta
     5161 atttaataga acctgttaca tctgttgttc ttacatagaa ttgcggtcta tagttattaa
     5221 agaatggagt atgtctacca ccctcatctt tatttaggat ataaacttca gcttcgaaat
     5281 cagtatgtgg agtaattgat tttggtttag caagaaccat accgcggata acttcttctt
     5341 tttttgtacc acgaagaaga acaccaacat tatcccctgc ttcaccttga tccatttctt
     5401 ttctaaacat ttcaacgcca gttacagttg ttgtttgagt atctttaata ccaacgattt
     5461 ctatagtatc accaactttt acaatacctt tttcaattct acctgtaaca acagtaccac
     5521 gacctgaaat tgagaaaaca tcttcaattg gcattaagaa atctttttca gtgtcacgag
     5581 ttggagttgg aatatagcta tcaacagcag ccataagatc cataattttc gctgaccatt
     5641 cgccatcttg tccagctttt gcttcttcaa gagcttttaa agcagaacct gaaataatag
     5701 gtgtgtcatc acctgggaaa tcataagagc ttaataattc tctaatttcc atttcaacca
     5761 attctaaaag ttcagcatca tcaaccatat ctgctttatt cataaataca acgatatatg
     5821 gaacacctac ttggcgcgat agaaggatgt gctctctagt ttgtggcata ggaccatcag
     5881 ctgcagaaac aacaaggata gcaccgtcca tttgagcagc accagtgatc atgtttttaa
     5941 catagtcagc gtgacctgga caatcaacgt gtgcatagtg gcgattatct gtttcatatt
     6001 caatatgaga agttgcaata gtgatacctc tttctttttc ttcaggagcg ttatcaatat
     6061 tatcataatc tttaagttct gccaaacctc ttcttgaaag aacagcagaa atagcagctg
     6121 tcaaagtagt tttaccgtgg tcaacgtgac caatagtacc aatgtttaca tgtggcttat
     6181 tacgtgaaaa tttttcttta gccatttttt cctccatata aaaatttaac aaggcaagtc
     6241 tatatttata attttttcaa ttttatggag ctcatagcgg gaattgaacc cgcgacctct
     6301 cccttaccaa gggagtgctc tacctctgag ccatacgagc gctcagaaaa attatataaa
     6361 aacatagaca actaaaaaac aattttaggg gatttactgt aagttagaaa aaaaatacag
     6421 ctcccagtca aactttggag cgggaaacgg gactcgaacc cgcgaccctc agcttggaag
     6481 gctgatgctc tagccaactg agctactccc gcaaagcatg gtggtgagtc gtggattcga
     6541 accacggaag gcgaaagcca gcagatttac agtctgccct cgttggccac ttgagtaact
     6601 caccataaat gaaatattac atctaagctt attgtaatat tctggtcaaa cactgctaaa
     6661 ataatggagc tggttaaggg acttgaaccc ccgacctgct gcttacaagg cagctgctct
     6721 accaactgag ctaaaccagc aaataattta aagatgttat tatatctgaa aaaaaatagt
     6781 ttgtcaagat tatgcgctat aaattattta aaaaacaatt tcataattaa aaatttccca
     6841 ttaaaaatac aaaaactaag attttttatt gaaatcattt atgatagtca aataaattaa
     6901 ggaatttctt agctctttcg cttttaggat tttcaaaaaa accatcagga gtattttctt
     6961 cgataatttc tccattatcc ataaaaatta ttctatcggc taccgctctt gcaaatccca
     7021 tctcgtgagt gactataagc atagtcattc catcttttgc caaatttaaa attacctcta
     7081 aaacttcacg aacgatttca ggatcaagtg ctgctgtaac ctcatcaaaa agcataagct
     7141 ctggattcat gcaaagactg cgcactatag ctattctttg tttttgccct ccgcttaact
     7201 cttttggata agcatcgatt ttatgtgcta aacctacttt ttcaagccaa attttagctt
     7261 cttgcaaaac ttcttcttta gctctttttt gtacttttaa aggacctaaa agtatgttat
     7321 ctttcacgct taaatgttca aatagctcgt atgattgaaa taccataccc actttttgac
     7381 gcactcttgt ccaatcttta aaatttttat cgatcttatc ttgtcctatt tctataaccc
     7441 catctgcaat ttcctcaagc ccattaatac aacgcaaaag agtagatttt ccgcaaccac
     7501 ttggacctaa aatcaccacc acttcttttt gttttacttc taagttgata ttctttaaag
     7561 catgatgaaa gccataatat ttttgcaaat tttttatctt taaaatactc attttaactc
     7621 catttttttt ctaatttttt agaatataaa gtaacaggat agcaaattaa aaaaaagata
     7681 aaaaagatta gaccataaat aataaatggt gctaaatcat ttttgttgtt aaattcgatg
     7741 atttgctgcc ccacttttac aagctctacc gcaccgatta aataagcaaa agttgtactt
     7801 ttaatcatgc gtgttaataa attcatactc ataggtgtta aacgacgcat agcttgagga
     7861 atgataatat aaaaataact ttgagcttta tttaaaccaa gacttgctgc actttcgtat
     7921 tggtgtttag gaatgctttt taaagaagtt cttaccaaat ccatcatttc aaaacttccc
     7981 caaatactaa aaacaataat agccgaactt acactgctta aatttatacc caaccatcta
     8041 gaaagtccaa aatataccat aaaaagccat actagtagcg gcataacacg aacaaattct
     8101 aaagcaaaac gacataaaat ataaatataa cgatttttca gactcatcaa aatacctaaa
     8161 aaaagcccgc caaaagaagt tataataata cttacaatag aaatttcaag tgtgatatac
     8221 aagcctttcc aaagtcgact taaagtatct ggatttaata gatcaaacat ttgaaaacct
     8281 tttttccaaa aagaacaaaa acaaagaaat aggcagtatg atacataaat atcccaaaaa
     8341 caaaagcaat aaaagctcat ccgttttata agtaagtgaa tttaaaccct tcataactgt
     8401 gactaaatcc ggcaaagcta taatgctcac aacagaggtt tctttaataa gaaaaacaat
     8461 atttgcgctt attcctggta agcaaacccc taaagcttga ggcattataa cataacgcaa
     8521 attattcaat ttagtaaaac ccaaagaaag acctgcttca aattgctgct ttttaatggc
     8581 ttcaaaacca gctctaaaac tctctgccat ataagaaccg cccaaaaaac taagccccac
     8641 aatagcacaa gcaaacgctg gacgcaaagc ctcatctaca cttaaacaaa tcaaattcaa
     8701 aggcggaatt tgttctaaat gaatatcaaa tttaggcaaa gcataataca agaaaaaaag
     8761 ctgtatcaat aaaggagtat tgcgagaaaa ttctatataa actttacaaa aagcttccat
     8821 aatcgttatt ttaaaataac tcattaaaat acaaaaaaag cctataatta tagaaaaaat
     8881 aataccaaaa aaactaagtt ttaaagtaag ccaagcagct gcaataaaag catttgaatt
     8941 agctagtata aaatcaaaat ccattttatt cctattacca aagtcctttt tttaaaccct
     9001 ctttatctag gatctcaatt ttaccctttt ttgtctcaat tagctctgaa tttttaaatt
     9061 cttttagaat tcttgacaaa gattcagcac gaacacttaa atccactgca atttgtcttt
     9121 gcgaaatttg agccaaattc ttttcatttt ccaaaagata tcttgcaagt ttacttttta
     9181 aatccaaaga attttctaat aatttttttt ctaaaatttt aattttttca aaaagagatg
     9241 aaataagcaa gaaattaaat tctttatttt ggctgcacag ggtttcaaaa tcttcaaaat
     9301 caatttctaa aatttcacaa tattcttcac aaatagcatt tgctggatat ctcaaacgct
     9361 taaacgtagg catttcggct ataaaattag gcggggtaaa ataatgcaaa gtaatctctt
     9421 tttcgcctgc tgtgcttttg tatacacgca ctctaccttt taaaagaata aaaaatttta
     9481 atgccttttc gccttcaaaa aataaaatat tatttttttc aaattttctt attttaccta
     9541 taccctttaa aaaatctaaa tactcttgca ttataatatt taacctatgt taattttatc
     9601 tcattttgtt tgtgctatat taacgataaa tttttatcca aaggcaaaca caatgaaata
     9661 tgaaactata aatcaagaaa gtatagctaa acttatggaa cttttttatg acaaaataag
     9721 aaaagataag gatttagggc ctatttttaa caatgccata ggaactagcg atgaagcttg
     9781 gaaagagcac aaagcaaaaa tagggaattt ttgggcagga atgttgctag gggaaggtga
     9841 ttatatcgga caacctctaa aaaaacatct tgatttgcct ccttttccgc aagaattttt
     9901 tggaatttgg ttaggacttt ttgaagaaag tttagataaa atttacaata atgaagaaat
     9961 gaaaaatgtt attttacagc gcgcacaaat gatagcctcg cattttcaaa atatgcttta
    10021 tcgttttggt ggacattaag attatatttc catcaaatct ttttttgctt tttccaaaat
    10081 gtattcatct ttggaaaaat caaaatattt aaattcattt ccatgctgga taaatccatc
    10141 gagcaaatct ccactcaaac gatttttaag atcaagttct gcgattttaa aaccatctaa
    10201 agtactagca aattctttta aacgacttgg aatttctttg agttttgtat aaagataaca
    10261 agtgctttta agtccgacac ggcccacgcg tccgcgaagt tgatgcaagg tagcaaggcc
    10321 taagcgctcc gctcctacaa taacaatagt actaagcctt ggcaatgaaa ttcctacttc
    10381 tacgactgtg gtgcttaata aaatatttcc ctcatcacga aaccgctcca aaatttcatc
    10441 cttttgcttg tcttttccat gcgtaacaaa aactttttca taattatcct cccaatacct
    10501 ccttgcttgt tctaaagaaa gataaggaat tttatcgctt ggattgacta agggatagat
    10561 gatgatgatt tgatgatttt gtgcgatttc ttctttgatt ttttcactaa gctttgcaaa
    10621 accttcattt tgtatacaaa gagtggtgat atccttttta aaaggcattt ccttgataaa
    10681 actaaaattt aaaagttctg attgtatcat gcttaaagtt cttggaatgg gagttgcaga
    10741 aaattgtata aaatgtgggg ctaattcatt ttcatttaaa gaataaattt gctgacgctg
    10801 tgcagagcca aagcgatgct gctcatctat cattacaagc acagcattat gactttgaag
    10861 gtgaatgagc gcatgggttc ctataatcaa attggctttt ttaatttttt cttccaaatc
    10921 tttttctttt ttaccccctt taataaataa aatatccaca aattcaggca aaagcttttt
    10981 tgcctcttca tagagttgat tggcaagtat gctagtagga gccattaaga tagcttgttt
    11041 tggatacacc atcaaagcag cgcccaacaa aaccaaagtc ttgccacagc ctacatcccc
    11101 cataatcacc cgtcttttag cttctttaga gcccaaatct tgctctatat cctttaaagc
    11161 atttaattga tcacgagtgg gtgaaaaggg taaatttttt agccaattgg ctatattgaa
    11221 aatttcaatt tcataagctt taaagtgact ttttttagcc ttcaagcgtt ttaaaaaatt
    11281 gtaaatttca atatatttta aatctttctc aaagcgctcc aaattctcaa acatcaaaaa
    11341 acttttttca tcataagtgt gtaaatttaa aagaaaatgg atatatttat cctcaatccc
    11401 actttctttt aaattttcat aattaagata tttgtgtata aattcagaaa tttttttatc
    11461 ttgtaaacct tgaatttgat attttggagc aaaacctgca aaagaagtta aaattttagg
    11521 attgttaaat tgccaaacat ggccaaaacg cgtaagtttc ccatttaaaa taagttcttt
    11581 gcctattttg caaattccaa agtgccaagc cctaggatga aaaaacacaa aggaaatgtc
    11641 ttgactccac tctttacaaa atcccaaacc aaagagctga cctttttttg aatgaatgct
    11701 tttaatgatt attttttgag tgcatagctc attttcttta ggtgttttgc ttggacttaa
    11761 attttcgatt tttttaggta agataagcgc taaatcaatc gcgcttttaa tttttaattt
    11821 tttaaaaaaa tcaaaatcat tttctttaat tttcatttgc aatacttgca aaatttaaat
    11881 ctaaaatttc attatgtttt tgaatataag catttagctc ttgaagctct actttttcta
    11941 taagctttaa ttcttcttta taatatcctt ttggcaatcc ctgatagtac tcattaaaac
    12001 ttatcgacaa acgcctacta agactttcat aacgcaaagg agttgaacct atgagaaaat
    12061 ttttagcctg cacaagctca ttttgactca ctccttcttt tacaaaatct ctaaatactt
    12121 ctttaactat ctttttagct tctttagcac tttcattttt agtttgcaaa taaccaaaaa
    12181 ctctagtaaa agatgcattc atatcaagca tagcataagc agaatacgca agccctcttt
    12241 taacacgaat ttcttccatt atccttgatc caaaaccgcc ttgacctaaa ataaatagtg
    12301 cgatttttgc aagataaaaa tccttatcat taaattttgt aaaaaagggt gcagcaaagt
    12361 aaatataggc ttgttcgctt tcttttctga tttggattat gtctttattt tttgagttaa
    12421 tttcataagt tttttgtgaa ttttgactgc ctttttgaag ttttgctaat aatttattta
    12481 ataagccttt agccttttct tgggctaaat tcccgcctaa aatcactaca agattactta
    12541 aattaatatt tttcttataa aaactctcca agtcgcttaa agaaatttgc ttgatacttt
    12601 tttcatcgcc atcatttgga ctttgaaatt ctttacattc aaaaatttcg ctattaagca
    12661 aattttttgc taaataatca aaatcactat ttttactagc aagctcacct agggcattga
    12721 tttttaattt ttctaaaatt ttttcttcaa atctaggatt taagagtaag ttttctaagt
    12781 gttttaaagc aaattcaaaa ttttctttca agcaagaaag attgatttct aaactttcaa
    12841 aaccactact tgcttccaaa tttacagctt taaattccaa ttctttaaaa aagctatcat
    12901 ctacaccctc atttaaaatt cttgcaaaca tctttgcaag tcctgctatt tcatcataac
    12961 ttcttccaca atttctaaaa acaagcttta agataacaat aggaaaatcg ttattttctt
    13021 caaaaataaa aggaattttt actctactaa cttctaaatt ctgcattaaa acctttctaa
    13081 aatttcataa gctgtattac gcttagcggg attttcacct aagcttttaa tcagtcttat
    13141 catctcatct tgattcattc tataactcgc acctgcagcg cttacaacat tttcttccat
    13201 catggttgag cctaaatcat tggccccaaa ttttaaagca agttgcccaa tcaatgaacc
    13261 ttgtgttacc caagaacttt gtaaattttt aaaattatcc aaataaagtc tagccaaagc
    13321 taaaagtctt aaatatttgt ttgaactttg cttcatgatt tcaggatgtt tttggattaa
    13381 tgctgtattt tcactttgaa aactccataa aataaaagct ctaaatcctc ctgtttcatc
    13441 ttgtaatttt cttaaatgct cgaagtgatc tataatctcc tcatcacttt caaccgttcc
    13501 aaacatcata gtagcagtgc ttttcatacc gatttcatgc gctcttctat gtacttctag
    13561 ccaagtagca gtatcgcatt tattaggcgc gataatatct cgcactctat cgcttaatac
    13621 ctcagcaccc gctccaggta ttgaaaacaa acctttagct tgaagtcttt gtaaaacttc
    13681 agaaattgaa attttagaag ccttggcaat ataagcaatc tcaactgcag aaaaaccatg
    13741 cacggtaata tttggataat gctccttaat ccacgaaaca agctcttcat accattctat
    13801 ttttaattta ggatgcaccc cgccttgaaa aagaatttgc gtccctccaa tagcttcaag
    13861 ctcttcgatt tttttaccaa tttcttcaaa actcaaaata taagcgtcat cttctttatg
    13921 atggcgataa aaagcacaaa aagaacaatc tatgcaacaa acattggtgt agtttatatt
    13981 tctatctaca acaaaggtgg tgattttttc gggatgaagt tctaattttc tttgataagc
    14041 tatttctcca agttctgcta aatttgcatt ccttaacaaa taaagagctt cttctttatc
    14101 taatcttttc aagttatttc cttaaatcca tttttagctt tattatagca tttaaaaaca
    14161 taaattatgc tatagtttcg cttatgaatt atattgactt attgaaaaat aataaaaata
    14221 ttagaatact aaccttagta caatttatcg tgtattttgg cgcttggttt tcccaaacag
    14281 gtgtttttac tcttttagta agccttaacg ctcctacttg ggcaacggct acaagcgcta
    14341 tgcttgcttt tttaccagga gttttgcttg ctcctattaa tggagttata gtagaaaaaa
    14401 acaaacccaa aaagcttttg ttaagcatga ttagcataga acttgtttct attttctgcc
    14461 ttatctttgt aaccagtctt agcatgcttt ggcttttatt tattttaatt tttgttagac
    14521 tttgcgtggc ttcgatttat tttcaagctg aaatgagctt gctagctaaa attttaaatc
    14581 caaaagaact caagcttgct aatgagatgc atagtgtaat ttgggcggtt tcttatacag
    14641 caagtatggc aagtgcggga atttttatca atttctttgg cattaaagcg gcctttttgt
    14701 ttgattgttg tctgataatt attggaattt tatttttaac caaacttcat attcctcatt
    14761 ttaaacaaaa aattcaaaat aaatttttta ttctgattaa agaaggtttt ttatatgttt
    14821 tacaaaataa aattatcctt catcttatta tattgcacgc ttttatagga cttaccgctt
    14881 atgaaacact cgtaacttta ttagcccaac acgaatacaa agaagtttta tccgctgctt
    14941 tggttatagg gtttttaaat gcaataaggg ctttagcttt agcttttggt cctatttttc
    15001 taagtaaaat cacaaacaat aaaaatgtat tttttctata cttaggtcaa ggtttaggaa
    15061 ttatactttg ggctttaacc cagtttaatt tttatatttc atttataggc cttattgctg
    15121 cgggattttg tacctcatcc ctttgggctt atacttatac tatgattcag aaaaattgtg
    15181 ataaaactta ctatggcaga gtgattgctt atacagatat ggtttatctt agctttagcg
    15241 ctcttatttc tcaactcatg ggcttattgt ttgaacaagg ttttaagctt gctataatca
    15301 cggctttact tggagtggta tttatatttg cggcttttta ttggagatgg tttgataaga
    15361 aatatttgtg aattttacaa attcacaaat taaaagatta aattttaaat aaatcttgca
    15421 agtttttcaa ggcttcttca ttacttaaag tattgcttgt ggtgcgagca ttcacttcat
    15481 taagttcgat ttcatatcca ctaagcatac ccgcaagacg aatattaata ccgctttttc
    15541 caatggcctt actcttttgc tcgctgttta aagttacaat tgctttttca ttttcaattt
    15601 ttacagaact cactatagca ggtgctaaag ctcttgcgat taaaatttca ggttcattgc
    15661 taaattcaat acaatctata ttttcattat gtaattcttt actcacagcg ttgattctaa
    15721 ccccttttac acctacagta gctcccacag gatcaatatt tgccccattt gcttgaagta
    15781 taattttcgc tctttctcca ggaattctag cgcatttaac tacgcttaca tatccatctt
    15841 taatttcagg cacctctgct tcaagtaaac attctaaaaa tttagggctt gtgcgactta
    15901 gctccatttt aataccctta tccgtataaa cacggcgtat cacagcttta acaacatcgc
    15961 ccactttaaa tttttcaccc ttgatgcgat tttttctagg taaaaaagct cttagctcat
    16021 cgatttctat ataggtattt tcctcattat caattcgcac aacatttcca aaaaccattt
    16081 gaccgacttt atttttatat ttttcaaaaa tggtttgctc aagtagtttt tgtatatggt
    16141 attctaattc tttatgtaaa atatttacag ctgttcttcc taaattttct aaagaacatt
    16201 cataggtaag ctcatcacca atttcaacat caggtgcttc ttttttagcc ttgctaaatt
    16261 caatataact ttctttattt tcattcaatc tttcgtcatt atcagccaca actgtaattt
    16321 tttgataaag atttaaattt tttctatcta caaaaaagtc atattcttgc ccataaattc
    16381 tttttgctgt atttatcaaa gctataataa ctttttcttt cacgctttct atatctaaat
    16441 ttttctcatt cgcaatgctt tctataatgt ctgcgattct ttccataatt atcgatacct
    16501 tttcttttgg gattttttta agaaagtaga ttaaaagtat atctttaata agtttaatta
    16561 aaagtaaaat ttgataaaat tatagattta aaagacgcta aggatataat atggatttaa
    16621 aattggcaag aaatttaatc aatgaagagc ctaaaaatat tagtctagct aaaattgaag
    16681 aggctgtaaa tcaagaagga caaaagtttt tttattttga taaagaaaat tcacacaaag
    16741 atcttattgc cttggttgaa cactttgaaa aaaaaggctt aagtgtttat catagaacta
    16801 tcagatatgg tttagatagt aatgatttta tgtatgaggt tcatattctt tgagctcgaa
    16861 aaaacttttt attcaaacct taggctgtgc aatgaatgtc agagattctg aacatatgat
    16921 agcagaactg acgcaaaaag ataattatac tttaacagaa gatattaaag aagcagattt
    16981 gatacttatc aatacctgct ctgtgcgtga aaagcctgtg cataagcttt tttcagaagt
    17041 gggtggcttt gaaaaggtta aaaaatcagg cgcaaaaata ggagtttgtg gatgtacagc
    17101 ttctcattta gggagtgaaa tctttcgtcg tgctccttat gtggattttg tactaggagc
    17161 taggaatatt tctaaaatta cccaagctgt taacactcct aaatttatga gcgttgatat
    17221 agattatgat gagagtgaat tcgcttttgg ggattttaga aatagcattt ataaatcata
    17281 tattaatatc tctataggtt gtgataagca ttgtacttat tgtatagttc cccatacaag
    17341 gggagatgaa atttccattc ctttaaatat catctataaa gaagcacaaa aagcagtaga
    17401 taaaggagct aaggaaattt tcctattagg acaaaatgtc aataattatg gtaaaagatt
    17461 tagaaatgaa cacaaaaaaa tggatttttc agatctttta gaagaactta gcaccataga
    17521 aggattagag cgcatccgtt ttacaagtcc tcatcctcta catatggacg ataaattttt
    17581 agaagtattt gccaaaaatc caaaagtttg taaatcaatg catatgcctt tgcaaagtgg
    17641 ctcaagtcaa attttaaaag ctatgaagcg tggttacacc aaagaatggt atctagatag
    17701 ggcattaaaa ttaagagaac tttgcccaaa tgttagcata tccacagata ttattgttgc
    17761 atttccagga gaaagcgata aagactttga agaaaccatg gaagttttag aaaaagtacg
    17821 ctttgaacaa atgttttctt ttaaatactc taaacgccct ttaaccaaag ctgctaccat
    17881 gccaaatcaa atcgatgaag agatagcctc aaatcgactt agtactctac aggctcgtca
    17941 taatgaaatt ttagacgata ttgttaaaaa acaagaaaat aaaactttta aagttctttt
    18001 tgaagaatta agagcaggca atgctatcgt gggtagaaca gataataatt ttctagtgca
    18061 agttgaaggc agcgaagagc tcttaggaac ttttaaagaa gtaaaaatta ctaatgcaaa
    18121 gcgtatggtt ttatatgggg aaatcattta aaatagcttt tatagcacgc ttagttttca
    18181 ttctacaatg gttgattttt cttacttgta aaaaaaccta caaaggtgat aaagttgatc
    18241 aaatttctaa tgtgatactt ttttggcatg ggcgtcttgc ccttatgcct ttcgcattta
    18301 ggcattttgg caaaaaagga aaaaaagctt atgttatgat ctctcatcat agagatgggg
    18361 agcaaattgc tagaattatc aaattgtttg gattagatac cgtgcgtgga agcacttcaa
    18421 aaggagctag tacagctctt cgaagtgctt ttaaaatttt agatgaaaat catgatgtag
    18481 tcattactcc tgatgggcca cgcggacctt atcatagcat ttcagatgga gcggtattgc
    18541 ttgcacagaa aaaaaatgtt aaaataagaa ttttaaacta tgaggcaaga aatttttggg
    18601 aatttaaaag ttgggataaa atgattttac ctaagccttt tactcattta gtctataggc
    18661 ttagcgaacc cttggatatt tcaagtttag ataaagatca agctaaattt tttttacttg
    18721 aacattttaa aaaaattgaa caaatggata aattttaagg aataaaatgt tatttttact
    18781 taaaaaaata ttaccacaac ttttcacaag tattatttta gaagataaaa aaaacatcct
    18841 taaaacttct atatataaaa atcacaaact tataagtagt aatgaaaaaa cctttgataa
    18901 gagtgaaaaa ttattagaat atgtaaaaac actcaatagc aaatttttat tttatcacac
    18961 agcattattt ttaaatgtca aagagcaagg tttgattcct agtaaaaacg acaaggattt
    19021 tgagcgtttt aatgtaggta aaatgagctt aaaatccatc gctttaaata atgctttgat
    19081 atacacagca acagaacaca tagaatactt taatgaattg tttgaagatt atggtggttt
    19141 agatttttta tactctcctt ttgctatact ttatcataat attttaaaag aaaaactaaa
    19201 cagcgataaa ataactcttt acgcctataa gcatgagcat attctaactc ttataatttg
    19261 ccgaggtatt gaaattttat atggagatat cattttcttt gaagaagaat tggatctaga
    19321 atttggacat caagaagaga atttagacaa cttaggcgaa gatacattaa atgatactga
    19381 agtaacgctt gataatttta atgaaaccct agaagataag cttaaagctc ttgatcaatt
    19441 tgataatatt ttaggaaata atgagaatga ttcagagttt ttggatggca aagataaatt
    19501 tgatcttgaa gaaatggatc aatttggaaa cgacatagaa ctttgtcgtc atattgttac
    19561 aagtattgaa aaattttata aagatgacaa atatccaagt gcgtttatcg ataaggcttt
    19621 aatccttagc accaaagagc ttgatcaaag tgctattgaa tttttagaag aagaaacttt
    19681 actggaaatt gagtctaagc caatcaatac cttagattca atcatagaac ttatgcaaaa
    19741 ggagcttcag tgaaaagcta tagcttcata caatctagaa aaaaacctat ctttacactc
    19801 tttgacaaaa tatggtttgg gctttttagt tttggtatag tttttatttt tgcggtatat
    19861 tttctatatc ttactcaaat cgcattaacg cataatttta tagaagagca aaaagaacaa
    19921 gttttgcaat ttcaaaataa aacacaagaa aacggaaaat tatatgatat tcttctagaa
    19981 caaagtaaaa ttgcaaatac ctttcacact caaaatcaag ctttcaaaaa tagcttaaaa
    20041 aatctttttg atataatagt taaaaccgat ggaatcactc ttgaaagtat agaacaagaa
    20101 gaaaattctc taaaacttat aggagttacg ccaacaaaag aaatgtttgc cctactttta
    20161 gaaacaccgc taaaaagtat ttttgatcaa agctttacaa cttattatcg tttaaacaat
    20221 ggctggtatc gctttattag cataagtaaa caaaattcag gagttttaca atgaaagata
    20281 aaagtcttga agaattaaat attttaaaga ttgttattta tgttttaagc tttattactg
    20341 tatgtactgc tttgatttta tttttattat tgcctgtgct gaaagattac aaacaaaccc
    20401 atttaagaaa aaattcgcaa gcagctatat ttaatgcagc aaaagctaag ctagatgcta
    20461 gtgaaaataa aataagcgcc ttaagaacag aaaataataa aagtctagag caatttgaac
    20521 aacaattcaa tctcacgcac tttcaaaatt ttttagaaaa atactttgaa aatatccaaa
    20581 taacagaact taaactagat aaaaaagaaa aatatcttac ccatagaatc aacatccgag
    20641 catcgataaa taatcctaga cgcttatatg acttcataga tgccttagct caatataaca
    20701 atcttgtaaa gattgattat cccatgacct taaaggctag tgatcatggg ataatgataa
    20761 atcttaatgt gcaaatttac tcaaactaga cttacattct cgccttttaa gacctgattc
    20821 attgtattca tagcacacat ttttccacac atagagcagg aatttagatc atcggggcgt
    20881 ctttcgttaa acattttttt agctttttcg ccatcaatgg caagtttaaa cattttctcc
    20941 cagtcgatat cctgtctcgc cttactcatc tcatcatctc tttttctttc ttttggaagc
    21001 ttagctaaat cccctgcatg agctgcaatc ttagtagcta ctataccatc tctaacatca
    21061 tttaaattag gcaatcttaa atgttcagca ggagttacat aacaaagtat atcagcaccc
    21121 gcagcagcag ccacagcacc accgatagct ccacttatat gatcatatcc agcaccaata
    21181 tccgtaacta aaggccctag aacataaaaa ggagcgcctt tgcaaatgcg tttttcaatt
    21241 tgcatattag cttcaatctc attaattgcc atatgtccag gtccttctat cattacttga
    21301 acacctgctt cccacgctct ttgagtgagt aaagataatt cgataagttc agaaatttgt
    21361 gctgcatcac ttgcatcatg tgtagatcct ggacgcaaag catcacctaa agatagtgtc
    21421 acatcgtatt ttaaacaaat ttcaagcaaa tcatcatagt attcaaaaaa aggattttca
    21481 gcttctttca tagccatcca cgcataaagt actgatcctc ctctagaaac tatattagta
    21541 agtcttttgc tttctttaaa aactctagcc gcgcgcgaat ttatacccgc atgtatagtc
    21601 ataaaatcaa ccccgctttt tgcatgatga taaaccacat ctaaaaaatc tctagcgctg
    21661 atttgtttta gatctttttc taaaaatcct accgcatcat aaactggaac tgttcctatc
    21721 atagcttttg aaactgcgat aagctcatct ctaaaacgac ttgttttgcc ataattgctt
    21781 aaatccataa tagcttcgat tccaaatttg tgagcaagct ctactttttt catctcctca
    21841 ctataatcaa cacaatcatt tgaaacacct aaatttacat ttaccttagt gcgaagtcca
    21901 agtcctatac catttggatc aagactttta tgattgatat tagcagggat gata
//
LOCUS       DARAII010000016        20099 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.016, whole genome shotgun sequence.
ACCESSION   DARAII010000016 DARAII010000000
VERSION     DARAII010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20099)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20099)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20099
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.016"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..208
                     /locus_tag="SB143_000529"
     CDS             <1..208
                     /locus_tag="SB143_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEF9749089.1"
                     /translation="AKNAGDEEACEMDEDFVNALGYGMPPTAGQGIGIDRLVMLLTNK
                     KSIRDVILFPAMRPLKSELKEDKE"
     gene            205..1449
                     /locus_tag="SB143_000530"
     CDS             205..1449
                     /locus_tag="SB143_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEF9749090.1"
                     /translation="MSLEQFDKEIFDLTNQELVRQCEGLEMIASENFTLPEVMEVMGS
                     VLTNKYAEGYPGKRYYGGCEFVDEIENLAIERCKKLFNCSFANVQPNSGSQANQGVYA
                     ALLNPGDKILGMDLSHGGHLTHGAKVNSSGKMYESFFYGVELDGRINYEKVREIAHIV
                     KPKLIVCGASAYARIIDFSKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSEE
                     WKIYAKQVRSNAQALAKVLMDRKYKLVSDGTDNHLVLMSFLEREFSGKDADLALGNAG
                     ITANKNTVPGETRSPFVTSGLRLGTPALTARGFKENEIQIVANYIADILDDIQNTHLQ
                     KEIKEKLKTLASNFIIYEKAMF"
     gene            1446..1991
                     /locus_tag="SB143_000531"
     CDS             1446..1991
                     /locus_tag="SB143_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEF9749091.1"
                     /translation="MISPMDLSLIKIISDHYYIRRDKIMKKITHRGRLFFDKFERIDA
                     PLNLNIMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDIPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            2004..2831
                     /locus_tag="SB143_000532"
     CDS             2004..2831
                     /locus_tag="SB143_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEF9749092.1"
                     /translation="MENNKNEFDDIILEKSNKSEKMKKILLRVIALIILFLVIMIVMK
                     LINSGEENTENQSILPSEPLNITQDNNTDSFESMPITENTSAEDQFEALRRQIQGEQN
                     DNSLAPAPNANDNINLTMPDQEVPAEPNTTNSEKVAPLNTTPPKQEVKQESKPKEEAK
                     QTVVKKEPAKQTPKQESKANANDLFKNVDAKPVHPNGLASGIYVQIFSVSNLDQKSRE
                     LAAVKQKGYEYKLYKTTVGGKEITKVLIGPFEKANVAAELAKIRKEVAKDAFSFTLK"
     gene            2828..3619
                     /locus_tag="SB143_000533"
     CDS             2828..3619
                     /locus_tag="SB143_000533"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEF9749093.1"
                     /translation="MKFLAVIGDPISHSKSPRIHNNAIQVLKLDGIYTRYHLQDYHQL
                     RQDFFKLKLQGANITLPFKEAALEMADVKDELASNIGSANTLCLKDGKIYAYNTDALG
                     FLEAIKEFESINKALILGAGGTALALAFALKQKGVEVCVANRSEKRFKDFTLYKTSLY
                     NALDDFDFDLVVNSTSAGLKDDDLPCDKILLDKILSRAKFAFDVIYGKETSFLKLCKE
                     HNLKVKDGFDMLLWQAVFAFELFFDVKDKREKIKNAMQEALKLEF"
     gene            complement(3692..4597)
                     /locus_tag="SB143_000534"
     CDS             complement(3692..4597)
                     /locus_tag="SB143_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749094.1"
                     /translation="MKKYFLFIIALFLAACSGASNNFVHVSMPNFKPQTPTKVEPIDS
                     GVSIMLEPINIEQNNNYSDYFENSVLKIRIDKEVALLKENLEEQFKTIAQLKGYKIVT
                     SNPDYTLKSLINVLIEEKNIQKSNNFMSGESVKSNLGIKFQGKIDFIDQHNPQNSTNL
                     TSHTKLDSLVDLNYPIKTKDGINMFKTTISTVPTQLNKGLEKPAFEIDKSFLHFYKNT
                     LNTLYNNLPKATDIGKTVPNSNTDSSGFNHFDTNTIFEENLPQEQNLDNSSQDISFQE
                     QTSSNSNIQYENNTNKNQDGVIIFE"
     gene            4688..5503
                     /locus_tag="SB143_000535"
     CDS             4688..5503
                     /locus_tag="SB143_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEF9749095.1"
                     /translation="MEFWQNIYSNFDVVAFSVLGFKVHWYGIMYVLALLLALLLAKFF
                     VRKFKLDIDEKRLDSYFIWVEIGVILGARLGYILIYDAHTMYYITHPWQIFNPYANGE
                     FVGIRGMSYHGAIIGFLIATFLFCKKYKENPWKFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITDVSWGIYVEGVLRHPSQLYEAFLEGVVVFIVIYLVKMKQKFQGELILVYACV
                     YSLARFVCEFYREPDFGLGFIFWGMSMGQILSLLMFVAALLFYICIKFKKVNI"
     gene            5571..6356
                     /locus_tag="SB143_000536"
     CDS             5571..6356
                     /locus_tag="SB143_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEF9749096.1"
                     /translation="MSELIEGYLGKSIDGKKSKMPAKLDFIQSASGLFLGLFMWVHMV
                     FVSTILVSKDFFNSVVHFLELKFIYNDPMMSYITSFLAACVLVVFFVHALLAMRKFPI
                     NFRQYQILRTHAKKMNHGDTSLWLVQAFTGFVMFFLGSAHLIFVITNGDKISADMSGD
                     RVINHFMWLFYIALLICVELHGSIGLYRLCVKWGWFEAKDVKDIRKSRKKLKMAKWII
                     SIFFLVLGVLSLAAFAKIGFENYQSQTTAMVKTYNGANYEYSI"
     gene            6340..8331
                     /locus_tag="SB143_000537"
     CDS             6340..8331
                     /locus_tag="SB143_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEF9749097.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLGNGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAS
                     WGVPWTRVTKGPRTVVINAQKTVIEEREEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRVIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLDG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIIGDYFADYCKNNGEVIDTNIVKDFLT
                     KEYQYLKSLVDKEGKYSVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKESQN
                     VKVHCKELDCANPELEEAYRVPRMLKVALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTLTYWVEGESLPRVEYDELDIMKMEMPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKNRHEIQHALMPYELQPKYKALNQRIGVDYE"
     gene            8324..9049
                     /locus_tag="SB143_000538"
     CDS             8324..9049
                     /locus_tag="SB143_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEF9749098.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYSDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKIEERIEPEVAEETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRTVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKNLPLQSKIAYMRRQLVAQRNK"
     gene            9077..11263
                     /locus_tag="SB143_000539"
     CDS             9077..11263
                     /locus_tag="SB143_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEF9749099.1"
                     /translation="MKELLQKLWQNELQLLDFNASFKDKNILDVSELAIILSVNKDNY
                     ERYFLLKEFSNICKKIDLRVDIFSIQKAQICVLNMFREGFIPKQDLLKALRILQKISN
                     NAEILEYIQNIQVQSIDKKALFQSGFNELNHINMELSQLSFDENSKIRLQKTLEKFQK
                     LEFNIAITGVMNSGKSSLLNALLKEDFLGVSNIPETANLTLLSYGNTQEAVIYFWDTQ
                     EWDNILKSSKFSKELKEFIDELALKIDIKEYVQDKALTQKINLKELKEFSSAKNQISA
                     LIKKIEIKSNLEFLKNNISIVDTPGLDDIVVQREILTNEYLKESDFLIHLMNASQALT
                     QKDAEFLIHCLLNSRLSKFLIVLTKADLLSQKDLDEVINYTKESLKARLENFDTHLIE
                     KIDFLCVSAKMASDFYKGLSSEESFKKSGMKEFEEYLFNELYSGEKSKIILQAYKKEL
                     LLELRNILNEYEMQNKLIKEDGQGLSEENDKLLLEFKAKEEALKEAKEEISNSILNLE
                     NFENGVDNLVLLLAKKLKERLIDEIKYLKDKAQKININRILNMIDITVKDGINDILRE
                     VKFENIKKIEELKTSLALKYDFLKDDFDNGFEGFKDEISKKIENIFSDEKFALLRLQI
                     EQIISTKVDLFELETKLTEVIFSTFESFNIGAILKDLDINGAFFAFLNERMKNYEVLQ
                     KEKLASIEHLINNLKNQNADILFSYEGNLEKIAKLQQLEVELMNAN"
     gene            11253..13085
                     /locus_tag="SB143_000540"
     CDS             11253..13085
                     /locus_tag="SB143_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEF9749100.1"
                     /translation="MQINILNHFIKAYEDAYNIDFDKSFEGQIKMLCKKLNEPFMHPS
                     YNLIQELEELSFSLDKNINIAIIGQFSSGKSTLLNLILKKECLPTGVVPVTFKPTFLR
                     YADEYFLRVEFQDGSDEITHIEELAKYTDQRNNVKETKSLHIFAPIPLLKKITLVDTP
                     GLNANEDDTLTTLKELQNIHAAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSAQELENVLNYAKTVFSKYFKELIAISCKEAKDKTKYEESNFNLLLDFLDNLDEK
                     ALKQKFTKRKMLHLCQVLEDENRLFVDIFDKLANQFQIYQEKLNSSFDDFIKEVQILN
                     HQILNKLKSIGERIASEIFNCIKEKEAHFYKEAKGFLKKDLYVKYDYKAPFISSDDAF
                     LAMFYNSDIMNKEFKKIKNEIYESFEKIKQKLKDFIDNLEKDILLFKAEFSNIQKDNI
                     LQSDKNFSELRAFCNASDEYFLKDFKELLFKSLLELDLFFEKLNLKAFANYANATKLS
                     LAFFSRKINESRVLYELDSSEFTLFYPKKSEIYERVLTELNAYEFEALLINKPILVKI
                     SNHFLEQNTNIIQEKNKILDLKKVELQKRKEQILEVRSVLKENL"
     gene            13082..13786
                     /locus_tag="SB143_000541"
     CDS             13082..13786
                     /locus_tag="SB143_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEF9749101.1"
                     /translation="MRIFFILSLFFHTLFAVNDLDNALRLYEGNKFVKAYEIFERLCE
                     KDNARACFSLAYMNENAQGVARDFDKAYKFYDKSCKLGLAKACSNMALTLQDLGYVNE
                     SLLAFNKACNLGESSSCNHMGLVYEDEKDGQMATHFYKRSCDLKDARACYKLGFLYER
                     GELVRQNLKSALAFYSKSCTLGFAEACYLIGRYYELEKKDLKKAKRYLGMACDKKHQE
                     ACAAYRKLNSQDIEIY"
     gene            complement(13805..14485)
                     /locus_tag="SB143_000542"
     CDS             complement(13805..14485)
                     /locus_tag="SB143_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749102.1"
                     /translation="MQIGLNYNYASNSSYYDKTQKNNAEQENTENTNSQNKDSKQNNE
                     QTQMINGVELTIQQVQQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFSYTRGPDNQM
                     YATAGEVPIRMQKGRTPEETIANARQVVAAAMAPADPSPQDYKVAANALKMEFEARAE
                     ATKLKAQEAQEKKEENEEKQENLDINNQDSKDNFEETQANKDFKNFIGKIYQQNSQNN
                     PINFSLVS"
     gene            14595..14957
                     /locus_tag="SB143_000543"
     CDS             14595..14957
                     /locus_tag="SB143_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEF9749103.1"
                     /translation="MIYENDLIYIEKEEAQVPWIKIFTKQVYKEFSDCPYELQKEIFD
                     KILRCEKAMIEFYKPEKINIASFANYVPRVHFHIMARFKEDAFFPECMWGKQQRELKD
                     LNLPSFDEFVIFLKNKMD"
     gene            15032..15604
                     /locus_tag="SB143_000544"
     CDS             15032..15604
                     /locus_tag="SB143_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEF9749104.1"
                     /translation="MKKILLSSLVAASLLSAGLFAKEYTLDKTHTDVGFKIKHLQISN
                     VKGNFQDYDAVIDFDPASFEFKKLEATIKVASVNTDNQTRDNHLQQNDFFKAKQFPNM
                     TFVMKKYEKIDNEKGKMTGTLTIAGVSKDVVLDTEIGGTAKGKDGKEKVGFSLNGKIK
                     RSDFNFAPGTSTITLSDDINLNIEVEANEK"
     gene            complement(15609..16565)
                     /locus_tag="SB143_000545"
     CDS             complement(15609..16565)
                     /locus_tag="SB143_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749105.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCLGKHHVLILNKKNIASITTLIFIGVLSIILPRNT
                     TFNSAGLEFHFITLNFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFAAYFQF
                     LFQEGTGIRYFEFASLVFCFYLLNYAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAFLES
                     TLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLRARLLD"
     gene            complement(16626..16835)
                     /locus_tag="SB143_000546"
     CDS             complement(16626..16835)
                     /locus_tag="SB143_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEF9749106.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     ENSKKTHEELLHIEQTIQDEIAKFK"
     gene            17002..17424
                     /locus_tag="SB143_000547"
     CDS             17002..17424
                     /locus_tag="SB143_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749107.1"
                     /translation="MDFNSVLFSIGDKLPKDATSTVMLKEKFDRLNEDKQKEVVAQLP
                     MIKLKSPALVFWVGTFLFGAFGVGRFMIGDWVLGLIRLGITIVAMFCGILMITYSALG
                     IIYGLLWLVNWIWWIVDMFLVGKKLRKQNFEKIANIIQ"
     gene            17676..18029
                     /locus_tag="SB143_000548"
     CDS             17676..18029
                     /locus_tag="SB143_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749108.1"
                     /translation="MKCFNAKFMFVGILAVFLSACSSGIPKCSDQDVQNVLTEIILEH
                     NFGRFSEVDRKKLKFTYSGFMSDLTDKESKTQYCKAQVKANGSINSRPYKWDAWIEYF
                     ARYTDDGMVYVEITR"
     gene            18079..18546
                     /locus_tag="SB143_000549"
     CDS             18079..18546
                     /locus_tag="SB143_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749109.1"
                     /translation="MDYNVFLLNIQDKINQEDFFNLKLKFEQLQNKKEALSNLVFLRL
                     QDPIKPLIMSIICGFLSLGWLAIDRFMIKDYALGILRIILSLFPCALFLILGISYEND
                     SNSDISEIFFGLFGIFLLLGIIWWGVDLFLVYKKIKKQNYNKIIEFIFNYQKI"
     gene            18624..>20099
                     /locus_tag="SB143_000550"
     CDS             18624..>20099
                     /locus_tag="SB143_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEF9749110.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLELKGISKAYDKELFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIANAIAPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVALCISHDRE"
BASE COUNT         7058 a         2449 c         3769 g         6823 t
ORIGIN      
        1 ggctaaaaat gcaggtgatg aagaagcgtg tgaaatggat gaagattttg taaatgctct
       61 aggatatggt atgccaccaa cagcaggaca aggtatagga atagatagat tggtgatgct
      121 tttaacaaat aaaaaatcta ttcgagatgt gatattgttt ccagctatga ggccattgaa
      181 atcagaatta aaggaggata aagaatgagt ttagagcagt ttgataagga aatttttgat
      241 ttaactaacc aagagttagt gcgccagtgc gaaggtcttg aaatgatagc aagtgagaat
      301 ttcactttgc ctgaagtaat ggaagtaatg ggaagtgttt taactaacaa atatgcagaa
      361 ggttatccag gtaagagata ttatggaggc tgtgaatttg tagatgaaat cgaaaattta
      421 gctatagaaa gatgtaaaaa actttttaat tgtagttttg caaatgtgca acctaattca
      481 ggttctcaag ctaatcaagg cgtttatgct gcacttttaa atccaggtga taaaatttta
      541 ggaatggatt taagtcatgg tggacattta acacatggtg caaaagtaaa ctcatcggga
      601 aaaatgtatg agagcttttt ttatggtgta gagcttgatg gaaggataaa ctatgaaaaa
      661 gttagggaaa ttgctcatat tgtaaaacca aagcttatcg tgtgcggtgc gagtgcttat
      721 gctcgtatta ttgacttttc aaaatttaga gagattgcgg atgaagttgg agcttatctt
      781 tttgcagaca ttgcacacat tgctggactt gttgtagcag gtgagcatcc aagtccattt
      841 cctcatgctc atgtagtaag ctctacaacc cacaaaacct tacgtggtcc aagaggcggt
      901 atcatcatga ctaatgatga agagcttgct aaaaaaatta attcagctat ttttccaggt
      961 atccaaggtg gaccattgat gcatgttatt gcagctaaag ccgtgggatt taaatttaat
     1021 cttagtgaag aatggaaaat ttatgctaag caagtaagaa gcaatgcgca agctttagct
     1081 aaagttttaa tggatagaaa gtataagctt gtaagtgatg gaacagataa tcatcttgta
     1141 ttgatgagct ttttagagcg tgaatttagc ggaaaagatg cggatttggc tttgggtaat
     1201 gcaggaatta cagcaaataa aaataccgtg cctggcgaaa ctagaagccc atttgtaaca
     1261 agtggattaa gattaggaac gcctgccctt acggctagag gttttaaaga aaatgaaatt
     1321 caaatagttg ctaactatat agctgatatt ttagatgata ttcaaaatac tcatttgcaa
     1381 aaagaaatta aggaaaaact caaaaccctt gcaagtaatt ttataatcta tgaaaaggca
     1441 atgttttgat ttcacctatg gatctgtcgc tgattaaaat aattagcgac cattattata
     1501 tacgacgcga taagattatg aaaaaaataa cacatcgagg tcgtttattt tttgataaat
     1561 ttgaaaggat tgatgctcct ttaaatttaa atatcatgag agaacatgca gcgaagaaaa
     1621 tcgttgttgc tcatgatttg atcaccaaag acaataaagt agaaaatatt gtttttgatt
     1681 ataatggttt taatgctgaa agattttatc atcgtgcgca gcttattttg cgtgaagaag
     1741 gttttataaa ttttacagct tacaaaacaa agactccagg tcatttacat ctttatattc
     1801 acaaaggtca cactgcgtta aacgaaggtt attctttagc gtctaaactt tcaatgatgt
     1861 ttgcaagtaa aatgccagtt gaatggaagg tgtttccaag tatggatatt cctagagagt
     1921 ttaatatatt aatactaccc tatgaagtct atcaaaaaga acgaggcagt tcttggtcta
     1981 aacatatgta agaaaggaat attatggaaa ataataaaaa tgaatttgat gatattattt
     2041 tggaaaaaag taataaaagt gaaaaaatga aaaaaattct cttacgcgtc attgctttga
     2101 taattttatt tctagtgatt atgatagtta tgaaactcat taatagtggt gaagaaaata
     2161 ctgaaaatca aagtatttta ccaagtgaac ccttaaatat aacgcaagat aataatactg
     2221 attcttttga gagtatgcca attactgaaa atacttcagc tgaagatcaa tttgaagctt
     2281 taagaagaca gattcaaggg gagcaaaatg ataattcttt agcaccagct cctaatgcaa
     2341 atgataatat caatttaact atgcctgatc aagaagtgcc tgctgagcca aatacgacaa
     2401 attctgaaaa agtggcacct ttaaatacta cacctcctaa gcaggaagta aaacaagaaa
     2461 gtaagccaaa agaagaagca aaacagactg tcgtaaaaaa agaacctgca aaacaaacac
     2521 ctaaacaaga gtcaaaagcc aatgctaatg atttgtttaa aaatgtagat gctaaacctg
     2581 ttcatccaaa tggtctagct tctgggattt atgttcagat attttcagtg agcaatttag
     2641 atcaaaaatc aagagagcta gcagctgtaa aacaaaaagg ctatgaatat aagctttata
     2701 aaactacagt aggtggaaaa gaaatcacta aggttttaat aggacctttt gagaaagcaa
     2761 atgttgcagc agaattagct aaaattagaa aagaagtagc taaagacgca ttttctttca
     2821 ctttaaaatg aaatttttag ctgtgatcgg cgatcccatt tcgcattcta agtcgcctag
     2881 aattcataac aatgccattc aagttctcaa gcttgatggt atttatacac gctatcatct
     2941 acaagattat catcaattaa gacaggattt ttttaaatta aaacttcaag gagcaaatat
     3001 cactttgcca tttaaagaag cagctttgga aatggctgat gttaaagatg agcttgctag
     3061 taatattggc tctgcaaata ccttatgttt aaaagatgga aaaatttatg cttacaatac
     3121 tgatgcctta ggttttttag aagctattaa agaatttgaa agtattaata aagctttgat
     3181 tttaggagct ggagggactg cgcttgctct agcatttgct ttaaagcaaa aaggagtaga
     3241 ggtttgtgtg gcaaatcgta gcgaaaaaag atttaaggat tttactttat ataaaaccag
     3301 tctttataat gccttggatg attttgattt tgatttggtg gttaattcaa cttcggcagg
     3361 cttaaaagat gatgatctac cttgcgataa aatactttta gataaaattt taagcagagc
     3421 aaaatttgcc tttgatgtca tttatggcaa agaaacctct tttttaaaat tatgcaaaga
     3481 gcataactta aaagtaaaag atgggtttga tatgctttta tggcaagctg tttttgcctt
     3541 tgagcttttt tttgatgtca aagataaaag agaaaagatt aaaaatgcca tgcaagaagc
     3601 tctgaagtta gagttttgat ttttttgatt tctcttagaa aatatcaaat ataataagag
     3661 aaatcaaagt attatttact atttaggcta atcattcaaa aatgataacc ccatcttgat
     3721 ttttgtttgt gttattttca tattgtatat ttgaatttga agatgtttgc tcttgaaaag
     3781 aaatatcttg cgagctatta tccaaatttt gttcttgagg taaattttct tcaaatattg
     3841 tgttggtatc aaaatgatta aagccgctag aatcagtatt gctatttggt acagtttttc
     3901 ctatatctgt ggcttttgga agattattat agagtgtatt taaagtattt ttataaaaat
     3961 gtaaaaaact tttatctatt tcaaaagctg gtttttctag acctttattg agttgtgtgg
     4021 gtactgttga aatagtagtt ttaaacatat ttattccatc tttggtttta atagggtaat
     4081 ttaaatccac caaggagtca agtttggtat ggcttgttag attggtcgaa ttttgagggt
     4141 tgtgctgatc aataaaatca atttttcctt gaaatttaat tcctaaatta gatttaacag
     4201 actctccact cataaaatta tttgattttt gtatattttt ttcttctata agaacattta
     4261 tcaaactttt aagagtgtaa tcaggatttg aagttactat tttatagccc ttaagctgtg
     4321 ctatggtttt aaattgttct tctaaatttt cttttaaaag agccacttcc ttgtcaatgc
     4381 gaattttaag tacagagttt tcaaaataat ctgaataatt attattttgt tctatattta
     4441 taggttctag catgattgaa accccagaat ctataggctc tacttttgta ggagtttgag
     4501 gtttgaaatt aggcattgaa acatgcacaa aattattgct agcaccactg caagcagcta
     4561 aaaataaagc aataataaat aagaaatatt ttttcatttt ttaaccttta agataagaaa
     4621 ttatgtttaa ttatagcaag ttaaagtttt tttgctatat ttttacaaaa taaataatgg
     4681 aaaaagtatg gaattttggc aaaatattta ttcaaatttt gatgttgtgg cttttagtgt
     4741 tttagggttt aaagtacatt ggtatggaat tatgtatgtt ttagccttac ttttagcctt
     4801 acttttagcg aaattttttg taagaaaatt taagctagat atcgatgaaa aacgcttaga
     4861 tagttatttt atttgggtgg aaattggcgt gattttagga gcaagacttg gatatatttt
     4921 aatttatgat gcacacacta tgtattatat tactcatcct tggcaaattt tcaatcctta
     4981 tgcaaatggt gaatttgtag gcattcgtgg tatgagttat catggtgcga ttataggatt
     5041 tttgatagct acttttttat tttgtaaaaa atacaaagaa aatccttgga aatttcttga
     5101 tttggtggct ttgagtgtac ctttagctta tgtttttggt cgtataggaa attttttaaa
     5161 ccaagagctt tttggacgca ttaccgatgt atcttggggt atttatgtgg agggagtttt
     5221 aagacatcca tcacaacttt atgaagcctt tttagaggga gttgtggttt ttattgttat
     5281 ttatctggta aaaatgaaac aaaaatttca aggtgaactt attcttgttt atgcttgtgt
     5341 ttattctttg gcgcgttttg tatgtgaatt ttatcgtgaa ccagattttg gtttaggctt
     5401 tattttttgg ggtatgagca tgggacaaat tttgagtttg cttatgtttg tagcagcctt
     5461 gttattttat atttgcataa agtttaaaaa agtaaatatt taatgtgtat taaaggctat
     5521 tgtactataa tgaagagatt ttttaaattt ctttctataa aggagtgaag atgagtgagc
     5581 ttatcgaagg gtatttgggt aagagcattg atggcaaaaa aagtaaaatg cctgcaaagt
     5641 tagattttat ccaaagtgct tctgggcttt ttctaggtct tttcatgtgg gtacatatgg
     5701 tttttgtatc tactatcttg gtgagtaagg atttttttaa ttccgttgtc cattttttgg
     5761 aattaaaatt catttataac gatccaatga tgagttatat tacctcgttt ttagctgcct
     5821 gtgttttggt ggtgtttttt gtgcatgctt tattggctat gagaaaattt cctattaatt
     5881 ttcgccaata ccaaattctt agaactcatg ctaaaaaaat gaatcatggt gatacttcat
     5941 tatggcttgt tcaagcattt acaggttttg taatgttttt cttaggctct gcgcacttga
     6001 tttttgttat cacaaatgga gataaaattt ctgctgatat gtcaggtgat agggtgatca
     6061 atcattttat gtggcttttt tatatcgcac ttttaatctg tgtggaattg catggtagta
     6121 tagggcttta tagactttgt gtaaaatggg gctggtttga agcaaaagat gttaaagata
     6181 ttcgcaaaag tcgtaaaaaa ctcaagatgg caaaatggat aatcagcatt ttcttcttgg
     6241 ttttaggagt tttaagtctt gcagcatttg cgaaaattgg atttgaaaac tatcaaagtc
     6301 aaacaactgc aatggtaaaa acttataatg gagcaaatta tgaatattca atatagtgat
     6361 gctttagtaa taggcggagg tttggcaggc cttagagctg caatagaggt ggcaaaaagt
     6421 ggtcaaagtg taacactttt aagtatttgt ccggtaaagc gttcgcactc tgctgcggtg
     6481 caaggaggta tgcaagcttc tttaggaaat ggtgctaaag gtgaaggtga taacgaagat
     6541 ttacactttg cagatacagt aaaaggaagc gactggggtt gtgatcaaga agtagcaaga
     6601 atgtttgcac aaactgctcc aaaagccgtt cgcgaacttg cttcttgggg ggttccttgg
     6661 actagggtaa ctaaaggacc aagaacagtt gttattaacg cacaaaaaac tgtaatcgaa
     6721 gaaagagaag aggctcatgg actcatcaat gctcgtgact ttggtggaac taaaaaatgg
     6781 agaacttgtt atatagctga tgctacaggc cactgtatgc tttatggcgt agctaatgaa
     6841 gctatcaaac atcaggtaaa aattatcgat agaatggaag cggttagagt tatccatgat
     6901 ggcaaaaaat gcttaggtgt aattgcaagg gatttaacta atgggcaact gattgcttat
     6961 attgcaagag gaacaatgat agcaacgggt ggttatggta gaatttataa gcaaaccaca
     7021 aatgcggtta tctgcgaagg aacaggtgca gctatagctc ttgaaacagg actttgtaga
     7081 ctttcaaata tggaagctgt ccaatttcac ccaacgccta ttgtcccaag tggaatttta
     7141 cttactgaag ggtgtcgtgg agatggtgga attttacgtg atgtggatgg atatcgtttc
     7201 atgcctgatt atgaaccaga gaaaaaagaa cttgcaagcc gtgatgtggt aagtcgtaga
     7261 atgatggagc atattagaaa aggtaagggt gtaaaaagtc cttatggcga tcatttgtgg
     7321 cttgatattt ccatacttgg ccgtgcacat gtagaaaaaa atcttcgtga tgtgcaagat
     7381 atttgcaaaa ctttcaatgg tattgatcct gctgatgaag gtccaaaagg ttgggctcca
     7441 gttttaccta tgcagcatta ttctatgggt ggcattagaa caaaacctac aggcgagagt
     7501 caatggttag atggtctttt tgcttgtggc gaggcagcgt gttgggatat gcacggattt
     7561 aaccgcttgg gaggaaatag ctgtgctgaa accgttgttg caggtatgat tataggggat
     7621 tattttgcag attattgtaa aaataatggt gaagttatcg atacaaatat agtaaaagac
     7681 tttttaacaa aagaatacca atatttaaaa tctttagtag ataaagaagg taaatattct
     7741 gtttttgaaa tcaaaaatag aatgaaagaa atcatgtggg ataaagtagc aatctttaga
     7801 acaggtgaag gcttaaaaga agctgttgat gagcttgaaa aactttataa agaatctcaa
     7861 aatgtaaaag tacattgtaa agagcttgat tgtgcaaacc ctgagctaga agaagcttat
     7921 agagttccaa gaatgcttaa agttgcactt tgtgtagctt atggagcgtt attaagaact
     7981 gaaagtcgtg gggcgcacta tagagaggat tatccaaaaa gagatgattt gaactggatg
     8041 aagagaactt taacttactg ggtagagggc gaaagcttgc ctcgtgttga atacgatgaa
     8101 cttgatatta tgaaaatgga aatgccacct gcattccgtg gatatggtgc taaaggtaat
     8161 atcatagaaa atcctttaag tgaaaagcgt caagctgaag ttgatgcaat ccgcgaaaaa
     8221 atggaagctg aaggtaaaaa tcgtcacgaa attcagcacg ctttaatgcc ttatgaatta
     8281 caaccaaaat ataaagcgct aaatcaaaga ataggagtgg attatgagta gaaaattaac
     8341 gataaaggcg tttaaatata atcctttaag caaaatttca aaacctcatt ttgtaactta
     8401 cgagcttgaa gaaactcctt ttatgacagt ttttgtgtgc ttgactttaa tccgcgaaaa
     8461 aatggatgcg gatttgagtt ttgactttgt ttgtcgtgca gggatttgtg gatcttgtgc
     8521 aatgatgatt aatggtgtgc caaagcttgc ttgtaagact ttaacaaaag attattctga
     8581 tggagttatc gagcttatgc ctatgcctgc atttagacat attaaggatt tgagtgtcaa
     8641 tacaggcgag tggtttgagg atatgtgtaa gcgtgttgaa agttgggtac ataatgaaaa
     8701 agaaaccgat atttcaaaaa ttgaagaacg catagaacct gaagtagcag aggaaacttt
     8761 tgagcttgat cgttgtattg agtgcggaat ttgtgtggct tcgtgtgcaa ctaagcttat
     8821 gcgcccgaat tttatcgcag caacagggct tttaagaaca gctagatatt tacaagatcc
     8881 gcacgatcat agaacagttg aagatttcta tgaattagtg ggcgatgatg atggtgtttt
     8941 tggatgtatg tctttattgg cttgcgaaga taattgtcct aaaaatttac ctttacaaag
     9001 caaaattgct tatatgagaa gacaacttgt tgctcaaaga aataaataat attttcccct
     9061 taaaaagggg aaaattatga aagaattact ccaaaaactc tggcaaaatg aactccagct
     9121 tttagatttt aatgcaagct ttaaagataa aaatattctt gatgtttccg aacttgctat
     9181 catattgagt gttaataagg ataattatga aagatatttt ctcttaaaag aatttagcaa
     9241 tatttgtaaa aaaattgatt taagagtaga tatttttagc attcaaaaag ctcaaatttg
     9301 tgttttaaat atgtttaggg agggttttat acctaaacaa gatttattaa aagccttgcg
     9361 aattttgcaa aaaatttcaa acaatgctga aattttagaa tatatacaaa atattcaagt
     9421 tcaaagtatc gataaaaaag ctttgtttca aagtggtttt aatgagctta atcatatcaa
     9481 tatggaactt agtcaattga gttttgatga aaatagcaaa ataagacttc aaaagacttt
     9541 agagaaattt caaaaattag aatttaatat agctataaca ggtgttatga attcaggaaa
     9601 atcaagcttg cttaatgcgc ttttaaaaga ggattttttg ggggtttcta atatccctga
     9661 aaccgcgaat ttgactttat taagctatgg caatactcaa gaggccgtga tttatttttg
     9721 ggatactcaa gaatgggata atatattaaa aagttccaaa tttagcaagg agcttaaaga
     9781 attcatcgat gagcttgctt taaaaatcga tattaaagaa tatgttcaag ataaggcttt
     9841 aacacaaaaa atcaatctaa aggagcttaa agagtttagt tctgctaaaa accaaatttc
     9901 tgctcttatt aagaagatag aaatcaaaag caatttggaa tttttaaaaa acaatatctc
     9961 tatagtggat actccaggac ttgatgatat agtcgtgcaa agagaaattc taactaatga
    10021 gtatcttaaa gaaagcgatt ttttaatcca tcttatgaat gcttctcaag ctttaacaca
    10081 aaaagatgct gaatttttaa tccattgttt attgaattct cggcttagca aatttttaat
    10141 tgtccttacc aaggcggatt tgttaagcca aaaagattta gatgaagtga taaattacac
    10201 caaagaaagt cttaaggcta gacttgaaaa ttttgacacg catttgatag aaaagataga
    10261 ttttttatgt gtaagcgcaa aaatggcaag tgatttttac aagggtttat cttctgaaga
    10321 aagctttaag aaaagtggca tgaaagaatt tgaggaatat ctttttaatg agctttattc
    10381 tggagaaaaa agtaaaatta ttttacaagc ctataaaaaa gaattgcttt tagagcttag
    10441 aaatatttta aatgaatatg aaatgcaaaa caagcttata aaagaagacg ggcaaggctt
    10501 aagcgaagaa aatgataaac ttttattgga atttaaggct aaagaagaag cgcttaagga
    10561 ggcaaaagaa gagatttcaa attcgatttt aaatcttgaa aattttgaaa atggggtgga
    10621 taatcttgtt ttattattgg ctaaaaagct caaagagcgt ttgattgatg agattaaata
    10681 tctaaaagat aaagcccaaa aaattaacat taatcgtatt ttaaatatga tagatatcac
    10741 ggttaaagat ggtattaatg atattttaag agaagttaaa tttgaaaata ttaaaaaaat
    10801 agaggaatta aaaacaagtt tggctttaaa atatgatttc ttaaaagatg attttgacaa
    10861 tggatttgaa ggctttaaag atgaaatttc taaaaagata gaaaatattt ttagtgatga
    10921 aaaatttgca ttgttaagac tgcaaatcga gcaaattatc tctaccaaag tcgatttatt
    10981 tgagcttgaa acaaaattaa cagaagtgat ttttagcact tttgaaagtt ttaatatagg
    11041 tgctatatta aaggatttgg atatcaatgg cgcctttttt gctttcttga atgaaagaat
    11101 gaaaaattat gaagtattgc aaaaagaaaa gttagcgagt attgaacatt taatcaataa
    11161 tcttaaaaat caaaatgctg acattttatt ttcttatgag ggaaatttgg aaaaaattgc
    11221 aaaattacaa cagcttgaag tggagcttat gaatgcaaat taatatttta aatcatttta
    11281 taaaggctta tgaagatgcc tataatatag attttgataa aagttttgaa gggcaaatta
    11341 aaatgttgtg taaaaaacta aatgagcctt tcatgcaccc aagctataat cttattcaag
    11401 agcttgaaga attgagtttt tctttagata aaaatattaa tattgctatc ataggacaat
    11461 tttcaagtgg aaaatcaacc cttttgaatt taatcctaaa aaaagaatgc ttgcctactg
    11521 gagtagtgcc tgttactttt aaacccactt ttttgcgtta tgcggatgag tattttttaa
    11581 gagttgaatt tcaagatgga agtgatgaaa tcactcatat agaggagttg gcaaaataca
    11641 cagatcaaag aaataatgta aaagaaacaa aaagtttgca tatttttgca cccatacctt
    11701 tgcttaaaaa aatcacccta gtggacactc cagggcttaa tgctaatgaa gatgatactt
    11761 taaccaccct aaaggagctc caaaatatcc acgcggcaat ttggttaagt ttgatcgata
    11821 atgcaggaaa aaagagcgaa gaagatgcta taaaggcaaa tttggagctt ttgggtgaaa
    11881 atagcatttg tgtgttaaat caaaaagata agcttagcgc tcaagaatta gaaaatgtgt
    11941 taaattatgc caaaacagtt ttttctaaat attttaaaga attaattgcc atttcttgca
    12001 aggaagcaaa agataaaaca aaatatgaag aatctaattt taatcttttg ttagattttt
    12061 tagataactt agatgagaaa gccttaaaac aaaaatttac aaagagaaaa atgcttcatt
    12121 tatgtcaagt tttagaggat gaaaataggc tttttgtgga tatttttgat aagcttgcaa
    12181 atcaatttca aatttatcaa gagaaattaa attcttcttt tgatgatttt ataaaagaag
    12241 ttcaaatttt aaatcatcaa attttaaata agcttaaaag cattggcgaa agaattgcga
    12301 gtgaaatttt taattgcatt aaagaaaaag aggctcattt ttataaagaa gccaagggat
    12361 ttttgaaaaa agatttgtat gtaaaatacg attataaagc tccttttatt tcgagcgatg
    12421 atgctttttt ggcaatgttt tacaacagcg atataatgaa taaagaattt aaaaaaatca
    12481 aaaatgaaat ttacgaatca tttgaaaaaa taaaacaaaa attgaaagat tttatagaca
    12541 atttagaaaa agacattttg ctttttaaag ctgaattttc aaatatacaa aaagataata
    12601 tcttgcaaag cgataaaaat tttagcgaac ttagggcttt ttgcaatgca agcgatgagt
    12661 actttttaaa agactttaaa gagcttttat ttaaaagttt gctagagttg gatttatttt
    12721 ttgaaaagtt aaatctcaaa gcttttgcaa attatgcaaa cgctacaaaa ttaagcttgg
    12781 catttttcag tagaaaaatc aatgaaagtc gagttcttta tgagctagat agttccgaat
    12841 ttacgctttt ttatcctaaa aagagtgaaa tttatgaaag ggttttaact gagcttaatg
    12901 cttatgaatt tgaagctttg cttatcaata aaccgatttt agtaaaaata tctaatcatt
    12961 ttttagaaca aaatacaaat ataattcaag aaaaaaataa aattttagac ttaaaaaaag
    13021 tagaattaca aaaacgcaaa gagcaaattt tagaagtcag aagtgtattg aaggaaaatt
    13081 tatgaggata tttttcattt tatctttatt ttttcacact ctttttgctg tgaatgattt
    13141 agataatgct ttaaggcttt atgagggaaa taaatttgta aaagcatatg aaatttttga
    13201 aagactttgc gaaaaagaca atgctagagc ttgcttttct ttagcctata tgaatgaaaa
    13261 tgctcaagga gttgcaagag attttgataa agcgtataaa ttttatgata aatcctgcaa
    13321 actcggtttg gctaaggctt gttctaatat ggccttaacc ttacaagatc taggttatgt
    13381 taatgaatcc cttttggcat ttaacaaggc ttgtaattta ggtgaatctt caagttgtaa
    13441 tcatatgggt ttggtttatg aagatgaaaa agatggtcaa atggctacgc atttttataa
    13501 aagatcttgc gatttaaaag acgctagagc ttgctataaa ttaggctttt tgtatgaaag
    13561 aggagagctt gtaaggcaaa atcttaaatc agctttggct ttttattcta aatcttgtac
    13621 tttaggtttt gcagaggctt gttatttgat cggacgttat tatgagcttg agaaaaaaga
    13681 tttgaaaaag gctaagagat atttaggtat ggcttgcgat aaaaaacacc aagaagcttg
    13741 tgctgcttat agaaagctaa attctcaaga tatagaaatt tattaaaatg tcatcaaaaa
    13801 tattttaaga aactaaacta aaattgattg gattattttg tgaattttgt tgataaattt
    13861 tgccaatgaa atttttaaag tctttgtttg cttgtgtttc ttcgaaatta tctttagaat
    13921 cttgattatt tatatcaaga ttttcttgct tttcttcgtt ttcttctttt ttctcttgtg
    13981 cttcttgcgc tttaagtttt gttgcttcag ctcttgcttc aaattccatt tttagagcat
    14041 ttgcagcgac tttataatct tgcggactag gatcagcagg cgccatggct gctgcaacga
    14101 cttgacgcgc attggcgata gtttcttcag gtgtccttcc tttttgcatt cttataggaa
    14161 cttcacctgc tgtggcatac atttgattat caggtcctct tgtgtagcta aagcttgcag
    14221 ctccagctaa accacctcca gcggcttgat gtgctgcttc gtgagctttt acatttctgt
    14281 ctatactttg aagctcacgc acttgttgta cttgttgtat ggtaagttca acgccattta
    14341 tcatttgagt ttgttcattg ttttgttttg agtctttatt ttgtgagttt gtattttctg
    14401 tattttcttg ttcggcatta tttttttgtg ttttatcata ataagaggaa ttgctagcat
    14461 agttgtaatt taagccaatt tgcatttttc ctcctttatt tttttgtata ttttagacaa
    14521 tattaacgca ttttgactta aaattttgat aaattttgta aaataacaat caatacaatt
    14581 ttaaaggaag attaatgatt tatgagaatg acttgattta tatcgaaaaa gaggaagctc
    14641 aagtgccatg gattaaaatt tttaccaagc aagtttataa agaatttagc gattgtccct
    14701 atgaacttca aaaagaaatt tttgacaaaa ttttgcgatg tgaaaaggct atgatagaat
    14761 tttacaaacc tgaaaaaatc aatattgctt cttttgcaaa ctatgttcca agggtacatt
    14821 ttcatataat ggcgagattt aaagaggatg ctttttttcc agaatgtatg tggggcaagc
    14881 agcaaagaga attaaaagac ttaaatttgc ctagttttga tgaatttgtg atttttctta
    14941 aaaataaaat ggactaaaat tatcattaat ggttgattgt tttttgttta ttagaattct
    15001 ttttacataa aaatacaaaa aaaggaaaaa aatgaaaaag attttattaa gctctcttgt
    15061 tgcagcttct ttgttgagtg caggtttatt tgctaaagaa tatactttag ataaaactca
    15121 cactgatgta ggttttaaaa ttaaacattt gcaaattagc aatgtaaaag gaaattttca
    15181 agattatgat gcggtaattg actttgatcc tgcaagtttt gaatttaaaa aacttgaagc
    15241 aacaattaaa gtagcatctg taaatacaga caatcaaaca agagataatc acttacaaca
    15301 aaatgatttt ttcaaagcaa aacaattccc taatatgact tttgtaatga aaaaatatga
    15361 aaaaatcgat aacgaaaagg gtaaaatgac aggaacttta accatagcag gcgtttctaa
    15421 agatgtggtt ttagatactg aaatcggcgg tacagctaag ggtaaagatg gaaaagaaaa
    15481 agtaggtttt tctttaaatg gtaaaatcaa acgctctgat tttaactttg cgccaggtac
    15541 ttcaactatt actttaagtg atgatattaa tttaaatatc gaagttgaag cgaacgaaaa
    15601 ataatttttt agtctaagag tcttgctctt agactttgta aatttttatc caaattttct
    15661 tcactttctt gccaaatcaa tttaaaatcc ggtttaaaat tttcattttc taaattaaat
    15721 tccgtgtttt tcaaggtgga ttctaaaaaa gcaagatgat ttaaagcttg atttttatca
    15781 ttaaaaatta aaataaaatc attttctacg ataaaaattt ttgctctaaa gcgttttaaa
    15841 atttttgcaa tttgttttaa aatgagtttg gtatagcttt ctttggtatc ttttagttca
    15901 ttaaaatgaa gcaaggcaat gatatagttg ttttttcctt ttgtaaagcg cgtaaggctt
    15961 ttttcattgg gtagctttgt taaggtgtca aaaaaagcta acctataagc gtaatttaaa
    16021 agataaaaac aaaaaaccaa acttgcaaat tcaaaatatc ttattcctgt tccttcttgg
    16081 aataaaaact gaaaatatgc agcaaaaaat gcgataagaa gataatattc tttagtttta
    16141 aaagttttga taaaaatgag tattaagccg actaaaaaaa ataaaaatcc taattcactc
    16201 acaggtttaa aaaaatttaa tgtaataaaa tgaaattcta aaccagcgct attgaaagta
    16261 gtatttctag gtaaaatgat gcttaaaacg cctataaaaa taagggttgt aattgaggcg
    16321 atattttttt tatttaaaat taaaacatga tgttttccaa ggcaaaatag agtaaaaatc
    16381 ataggtaaaa acaaagccac aaataaatta gcttgaaaaa aacttgtata aaaataaggc
    16441 aacttagctc ctagtaatac taaagtcaaa aagaaaattt ttgaattttt aaagtaaaag
    16501 gatagcacaa gagctgaaat ttcaaaaata aaactcaatg atattaaaaa atctaataaa
    16561 aacatttcaa atccttgatt ttaataaaag tgataattgt atagaaaaaa gcttaaaagc
    16621 ggattttatt taaatttagc aatttcatct tgtatggttt gttctatatg aagcaattct
    16681 tcatgagttt ttttgctatt ttctaaaagt tcatcaaatt taaagccaag cataacaata
    16741 cgatataaat tgggtttgta ttttctccaa ttatataaag tgctaacatc aatgtctagt
    16801 tcatatgcca tatcacgctt gctctttttt gtcatttttt acctcaaaaa tttagccttt
    16861 aaaaaatttt acattaaaat ttctttatta aaaacacttg aaatattcaa tcttttatat
    16921 aaaatatatt taatatttca atattaatta agttatagta tggaataatt cgagatattt
    16981 tttaattttc aaggagtagt tatggatttc aattcggttc ttttcagcat tggcgataaa
    17041 ttgccaaaag atgcaacatc taccgtgatg ctaaaagaga aatttgatcg cttaaatgag
    17101 gataaacaaa aagaagtagt agcacagctt ccaatgataa aactaaaaag tcccgcttta
    17161 gtattttggg tagggacttt tttatttggt gcttttggag tgggtcgttt tatgatagga
    17221 gattgggttt tagggcttat acgcttggga attacaattg tagctatgtt ttgtggtatt
    17281 ttaatgatta catatagtgc tttagggata atatatggtt tgttgtggct tgttaattgg
    17341 atttggtgga ttgtagatat gtttttagtg ggtaaaaaat taagaaaaca aaattttgaa
    17401 aagattgcaa atattataca ataatttcga gtttttatga aaaacaatca aaaataagtt
    17461 tgcaaaatat ttttattaag tttttagtaa attttgtttt tgtggcaagt gagatttaga
    17521 attcttaagc aataaagaaa attgctttta aatattttgt ctgttgctcc aaatattgca
    17581 caggtttttt tagagattac aagtaaaatg gtgaacttgg tacagatgaa tagaaactaa
    17641 aatattattt aggtgaacaa aaaaggagga aattaatgaa atgttttaat gcgaaattta
    17701 tgtttgttgg aattttggca gtatttttga gtgcttgtag tagcggtatt ccaaaatgta
    17761 gtgatcaaga tgtacaaaat gttttaactg agattatttt agaacacaat tttggtagat
    17821 tttctgaggt tgatcgtaaa aagttgaaat ttacttatag tggttttatg agcgatttaa
    17881 ccgataagga aagtaaaaca cagtattgta aagctcaagt aaaagcaaat ggaagtatta
    17941 attctcgccc ttacaaatgg gatgcttgga tcgagtattt tgctagatat actgatgatg
    18001 gtatggtata tgtagaaatt accagataac tttttaaggc aaaaatgcct taaaaagtta
    18061 attttaagga gactggatat ggactataat gtttttcttt taaatataca agataaaata
    18121 aatcaagaag attttttcaa tttaaagctt aagtttgaac aattacaaaa taaaaaagaa
    18181 gctttatcaa atttggtatt tttaagactt caagatccta taaaacctct aattatgagt
    18241 ataatatgtg gttttttaag tttaggttgg ttggcaatcg atagatttat gataaaagac
    18301 tatgcattag gaatattgcg tataatatta tctttatttc cttgtgcgtt atttttgata
    18361 ctaggaatta gctatgaaaa tgattctaac tcggatattt ctgaaatttt tttcgggttg
    18421 tttggaattt ttctattatt gggcattatt tggtggggag tagatttatt tttagtctat
    18481 aaaaaaatta aaaaacaaaa ttataataaa attatagaat ttatttttaa ctatcaaaaa
    18541 atttaatttt aaaattaaaa attcaagcct ttttcgctac aatttcttaa aaatttttat
    18601 aagtaaaaaa tttaaggaaa atcatggttg aagtaaaaaa tcttactatg cgttttgcaa
    18661 atcagctttt atttgaaaat gttaatttaa aacttgttcg aggacaaaga tacggactta
    18721 tcggtgctaa tggtgcagga aaatcgactt ttttgaaaat tctttcagga gaaattgagt
    18781 caagtagtgg tgaaatagta tttgatgaag gcttgaaaat cgcagtttta ggtcaagatc
    18841 aatttgcttt tgaaaactac accatcaaag atgcagtgat gtgtgcaaat aagcgtttat
    18901 atgaggcctt aaaagaaaaa gaaaagcttt atatgagcga agaatttact gatgagatca
    18961 atgagcgttt aggtgagctt gagataataa cggctgaaga ggatcctaat tatgattgtg
    19021 aaacgcgttg tgagaaaatt ttaagctctt taaaaatcaa agattttgat gctttgatga
    19081 gcaccttgca aagcgcagac aaatttaaag tcttgcttgc gcaagtattg tttttaggag
    19141 cagatgtact ttttttagat gagcctacaa ataaccttga cttagaagcg atttcttggc
    19201 ttgaaaatga gcttttaaga catgagggaa ccttggtggt gatttctcat gataggcatt
    19261 ttttaaataa aatttgtaca agaattttgg atgtggattt taaacaaatt cgtgattttg
    19321 cgggaaatta cgatgattgg tatatggctt caacgctttt ggcaaaacaa gctgaactta
    19381 agcgcgataa aactttaaaa gaaagagaag aattagaaaa ttttatccgc cgttttagtg
    19441 cgaatgcttc taaggcaaaa caagctacaa gtcgtgcaaa ggctttggag aaattggagc
    19501 ttgaagagat taaaatttca agtcgcaggg atccaagtat agtttttaga acaaatcgtg
    19561 aaataggaaa tgaagtttta gagcttaagg gtattagtaa ggcttatgat aaagaattgt
    19621 tttcaaattt agaattaaaa atcgaaaaaa atgacaaaat tgctttaatt ggtgcaaatg
    19681 gtgtaggcaa gtcaactttg gctaaaatca ttgccaatgc tattgctcct gatagcggtt
    19741 ctatacacct tggagcgact atagaacttg gatattttcc ccaagataca agtaatttaa
    19801 tttgtgaaaa tttgaaactt tacgaatggc ttatgagtga aaaattcaaa gatttggatg
    19861 aaattcgaaa gtgtttaggt agaatgcttt ttagtggtag tgatcaagag aaaatggcag
    19921 cgagcttaag cggaggggaa aaacatcgtt taatgctttc gcgtttgatg ctagagcgcc
    19981 caaatttttt acttttggat gagcctgata accatttgga tcttgagagt atcatagccc
    20041 ttggtgaagc tttatataat ttcaagggtg ttgcactttg tataagtcac gatagggag
//
LOCUS       DARAII010000017        19713 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.017, whole genome shotgun sequence.
ACCESSION   DARAII010000017 DARAII010000000
VERSION     DARAII010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19713
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.017"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..462
                     /locus_tag="SB143_000551"
     CDS             <1..462
                     /locus_tag="SB143_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl acyltransferase"
                     /protein_id="HEF9749111.1"
                     /translation="GKQLKSQRMTELLAKNRTQFDIELIDKKGGLRKMLSAIKNKRAL
                     GILTDQNCTDNEGVRLDFFGKRVNYQAGASILAKKTGALIIPAYIYQGEDEKFHIKFF
                     KTLDPLNSSLEELTKYQAKTCEEMIQFKPDEYFFFHRRFASYDEKLYKGIK"
     gene            459..2009
                     /locus_tag="SB143_000552"
     CDS             459..2009
                     /locus_tag="SB143_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEF9749112.1"
                     /translation="MNLEKISVIIIVKNAQNTLFECLNSLKEFGEIILLNNESTDDTL
                     KIAKEFQKDFTHLYIYESKFIGFGALKNLALSHAKNEWILNIDADEILENEAKEELKK
                     LEFKEQNILALTRKNLYKGEWIKACGWWPDHVLRVFNKKHTKFNENLVHESLILYPNT
                     QKVYLKNGLRHFAFESIDDLLDKLQKYSKLWALQNLHKESGICKALVRGFWTFFRNYV
                     LKKGIFYGYKGFIISVCNGLGAFFKYMKLYELKKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLAFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRAAKSRNNAI
                     KASKSEYIILIDGDMILEKDFVKNHLEFAKRKVILQGSRVILNKNESEEILKNNNYSL
                     AFNKKDFKSSKNSFLAKIIYKFSKIEQKFFDTKEIVRGSKTCNMSFFKTDFDELDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHKENSKKMLEYNHKIYLDTIQ
                     NKKISWKG"
     gene            2015..3172
                     /locus_tag="SB143_000553"
     CDS             2015..3172
                     /locus_tag="SB143_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEF9749113.1"
                     /translation="MKKVGVIVPIYNVENFLKECLESIINQSFNNLEIILVNDGSTDK
                     NSFEIAKEYALKDQRITLFDKENGGLSSARNTGLEYFYKEYKLEFSDEKDDFYTFIIA
                     NENPQNVYKIYKRKNACKDKILKIPNIDYLIFLDSDNSWEKDCIKECVKKMQGIDVLW
                     FDHLCIYEKEIKNKGQNTRMQIFQYKEECIISPKDYAQRALKVGSRDISFSWGGMIDF
                     NFLKQIKLKFINYIINEDIHFGMVLFASANMIYVLPKKLYKCLLRTNSISNHDKKVTK
                     ANISHYYKDIYRAFDEDAKLAKEYLKLASRVITMLKLIDFFQNKLENENSKAIKEVFL
                     PFYAKKALKFNKTNLDPLNLKNELDKIKPFAHNILPYDIWKILQRIKNIFN"
     gene            complement(3165..4145)
                     /locus_tag="SB143_000554"
     CDS             complement(3165..4145)
                     /locus_tag="SB143_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide synthesis protein"
                     /protein_id="HEF9749114.1"
                     /translation="MNLYNKIIYNLTNLIPIKPLRRKLRAHISYKIDHPKVSKYLDEN
                     YIQPFFKGKIPSFVFKKKQDFKDNKIIWQLWFQGEENASYMIRQCFKSVKKHMGSEYK
                     IIILNEKNIENYLEFPDFVLEKIKKKTFGEKTIVFFSDLLRVCLLATYGGIWCDASIF
                     LSDKIPQDLRNREFFAFERARHRPNKKELKKFIKSPYFSYGYFNWNDDFMVRLLNSFL
                     IAKENNKIVSVLRDLLIYFWQKEENSKYFYYFTQQILFELLKRNGYIKNEIFENKSDI
                     ECHLLQFYAKDKFDNKLWEEIKKQSFLHKLTHFRSVKKDSYIDKIIMQVN"
     gene            4213..5154
                     /gene="yibB"
                     /locus_tag="SB143_000555"
     CDS             4213..5154
                     /gene="yibB"
                     /locus_tag="SB143_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein YibB"
                     /protein_id="HEF9749115.1"
                     /translation="MQKEITIVTAFYNVGRTTRSNEQYLSYFDFWAGLKNKVIIYTTD
                     DMKEAILEIRKKHNLEDKTIIITKDLKEFDKENFEKIQETFNNYDQSLNRKHPKNIEC
                     NNAMYCYLMYLKPFFVVDAIEKKLSSENIIWLDFGFNHRDEFFTNKAEFNFLLEKPKN
                     INDKKINFFSIKNEEKNTIPAIYYNMEIFITGSIFYGNINSWKIFKQDFEKCLNCFLS
                     FNIVDDDQIMLLWCTRNNPDNYKIIRTYEWFGSLLSFIPDDIKSHLTFKRKNSKYYKT
                     IKEEIKKDIYNKQYFKFLFHSLKYGYYKFINKKNIDL"
     gene            5398..6288
                     /locus_tag="SB143_000556"
     CDS             5398..6288
                     /locus_tag="SB143_000556"
                     /inference="COORDINATES: protein motif:HMM:NF017783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
                     /protein_id="HEF9749116.1"
                     /translation="MNKNLNFTKKSVLIAGNGPSLKEIDYSLLPKEYDIFRCNHFYAE
                     DKYYTGKKIKAAFFVIPYFFNEYYTMQKMLQNGDYECENIVCKMYNFQDRKEKIFREN
                     FKYFFPAAINGYDAFFYKLKELSNMIDFDFCYEYNTTEMLTGTYVICCAVACGYKEIY
                     LAGMDFGDEKYNYFSEKIEKIKESKKRTTKMHHKSIDLKILDFLQQQYNVKIFSICPN
                     SSINAFIPLHPIQNNENIFKPIERPKDAIKTQLTPPIKAVRRYKRLYLESNIIIKFFH
                     ELVQVPRRIRHYYSKTRYTR"
     gene            complement(6615..6887)
                     /locus_tag="SB143_000557"
     CDS             complement(6615..6887)
                     /locus_tag="SB143_000557"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749117.1"
                     /translation="MDVHYLAEKNYFDIGHDRREESIFLNLKDLLKLAVIRDEEIRPL
                     QTKLWIDFKNLNEYNMQKSLQTLLGICKETGFNIKNLIVESPNLSF"
     gene            complement(6984..7760)
                     /locus_tag="SB143_000558"
     CDS             complement(6984..7760)
                     /locus_tag="SB143_000558"
                     /inference="COORDINATES: protein motif:HMM:NF013080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEF9749118.1"
                     /translation="MSEGGYYTYWISNQESVSTLGNAPESMARLSNKAIFLDNFFTGQ
                     TLARDEQILEELKKLSHKEKEFHILHLQGTHMEYAKRYSKVFEKFSIKDLKENCLDNL
                     NGSAKLNDRQAKIKSHYLNAIYYNDFVVSEICNYFKDEEAIVFYLSDHGDEVYDFRDF
                     FGYTETIGSRYMAEIPFMIFTSDKLKQNHPDIINKIKKAQNLLFMSDDFLHAFLDLLG
                     LDVEDLENNRSLFSDNYNKDRIRLFANKNYDEELKLCGSD"
     gene            complement(7765..7953)
                     /locus_tag="SB143_000559"
     CDS             complement(7765..7953)
                     /locus_tag="SB143_000559"
                     /inference="COORDINATES: protein motif:HMM:NF013080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEF9749119.1"
                     /translation="MSLYNYKLKTTPKLEALRNSENLFVFTDVIAPHAHTNPAISKIF
                     TFSNYENSSIAWFKQKYC"
     gene            complement(7963..8307)
                     /locus_tag="SB143_000560"
     CDS             complement(7963..8307)
                     /locus_tag="SB143_000560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749120.1"
                     /translation="MYIKWFFIFSIVLFLIPYNGLLFLPNEYHILDISKIIIFLVCLI
                     SVVKKPHKYFIDDFLLYSWFEAIKTIRGNANEYLMQLNDLERELKKQNKTYKVINSKN
                     IPKIVVIMGEST"
     gene            complement(8794..9921)
                     /locus_tag="SB143_000561"
     CDS             complement(8794..9921)
                     /locus_tag="SB143_000561"
                     /inference="COORDINATES: protein motif:HMM:NF016145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HEF9749121.1"
                     /translation="MIFKKIRVLKWQILSLIYKKDHYRYKIYMYNHQNKNFILKKYSH
                     LINKKFSSFGMKKYPRREEIGGDYCLFKYLYIPGIKAYNLGDYIQTIATRSLIELIDK
                     NAKFHFYNRDSFSLYNKKESICIMQGWFADDYNFLPNERIFPVYIGTHFTKKMQEYFD
                     VLNVDFKDFEIGCRDLSTLDYFNKKGANAYFSRCLTLTLPKREVSAKQNSIFLVNLNH
                     EMSSLLPDFIKKEAIEINQKAIKIKNRNLKNEWQECYKEAQDILEKYASEAKLVITTA
                     LHCAAPCIALGIPVILLQEDKVYEDRFSALKGILKPYTFNDLKDNRIDFEPKILDIEF
                     LKEMMIKNLKLTLKKHMFTLNKDEEKELNSIRNKIAHFEII"
     gene            complement(9933..10751)
                     /locus_tag="SB143_000562"
     CDS             complement(9933..10751)
                     /locus_tag="SB143_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEF9749122.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNIVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACEI
                     AFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVFNQKEFLEFLSKQRHFCWSVWAKC
                     FKKDIILKSFEKIKIDERLSYGEDVLFCYIYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILWQNYQDKVKSNELIKKLSLEFENDKFYKQLFDVLNKEELDLKRRIDNL"
     gene            10810..11769
                     /gene="waaF"
                     /locus_tag="SB143_000563"
     CDS             10810..11769
                     /gene="waaF"
                     /locus_tag="SB143_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEF9749123.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEYFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTRQRYFF
                     DKNKHKEEHQVLKYLYFIENSLDIKAHSKDLKLPFKLKFQNPIVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEIVIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLV
                     YLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNPHL"
     gene            complement(11750..12310)
                     /gene="gmhA"
                     /locus_tag="SB143_000564"
     CDS             complement(11750..12310)
                     /gene="gmhA"
                     /locus_tag="SB143_000564"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEF9749124.1"
                     /translation="MINLVEKEWQEHQKVTKASEILKGQIAKIGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDILIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGKMNELCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(12307..13692)
                     /gene="rfaE1"
                     /locus_tag="SB143_000565"
     CDS             complement(12307..13692)
                     /gene="rfaE1"
                     /locus_tag="SB143_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEF9749125.1"
                     /translation="MLEFLSDQNPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDESGKFLKENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDTSAILLEDELVELFNKRIENFKAVVLSDYAKGVLTPKVCKAFI
                     QKANELNIPILIDPKGNDFGKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEAGIAFFDENLRIAPAKALEVYDVTGAGDSVIAVLAFCLASGVEIF
                     KACEIANEAAAIVVSKIGSVSVSFDEMKSFKRVGFEKKIKTKEELLKILEQSDKRIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDILIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGSNLISRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(13685..14638)
                     /gene="rfaD"
                     /locus_tag="SB143_000566"
     CDS             complement(13685..14638)
                     /gene="rfaD"
                     /locus_tag="SB143_000566"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEF9749126.1"
                     /translation="MKIAITGGAGFIGSQLALNLQDKHEILIIDKMRSYATFENGNLQ
                     SFGHFKNLLDFNGELFVGDINDEKVLKKIEDFKPEVIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIKLHAKLVYASSASVYGDAKSPQTVGKDEEPKNPYAFSKFMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVVQFAHQILAGKNPRLFEGSDQIFRDFT
                     YIKDVISANLIALESKCGVYNVGSGVARSFQDIVDILQKELHTNLTCEYIPNPYAKSY
                     QFHTQAKLDETWGYKPKFSLEEGIRDYLEEIKRLFEKEVNA"
     gene            complement(14635..15156)
                     /locus_tag="SB143_000567"
     CDS             complement(14635..15156)
                     /locus_tag="SB143_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEF9749127.1"
                     /translation="MKRKALFLDRDGIINIDKKYIYKIQDFEFCDGIFELCRYFLAQK
                     YLLFVATNQSGIARGYYTQEDFFKLCDFMLNEFLKENIKIDKIYHCPHLEGCECRKPK
                     AGMLLKAREEFDIDMGNSIFIGDNLSDMQAGKNAQIGTLCLVNEEEKEGDFFRQFKNL
                     NELLDFFKKKEDR"
     gene            15275..15574
                     /locus_tag="SB143_000568"
     CDS             15275..15574
                     /locus_tag="SB143_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEF9749128.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGAKADKVYLNK
                     VPALKSISSAERLQYMKEYSEGKRNAYGQGAIMKINLKGLTEEDFKAIEAYIETL"
     gene            complement(15604..15804)
                     /locus_tag="SB143_000569"
     CDS             complement(15604..15804)
                     /locus_tag="SB143_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein"
                     /protein_id="HEF9749129.1"
                     /translation="MNSVIMMMIGVSILGFFIILATLLWGIRTKQFDDDYKFTTLNDD
                     EDALRDAIELEKRKKEALEKRK"
     gene            complement(15797..18160)
                     /locus_tag="SB143_000570"
     CDS             complement(15797..18160)
                     /locus_tag="SB143_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEF9749130.1"
                     /translation="MIMKCEHCRLDYQKSQMIEAKGKFFCCRGCLSVWEILHESGLDE
                     FYERLGNNALKPVSLEFSNKNYDEFITKTKEGFSEIYLMIHGIECSACVWLNERVLTK
                     QEGILELDINHLSHKARIVFDEQSVSLAQILNLIESIGYKASAYDPSKNSKKADLIKR
                     EFYSKLIVAIACVMNIMWIAVAKYAGFFSGMDRDIKDILNFAEFILCSPVLFYTGSNF
                     YKSAFKALKMRSLNMDSLVISGASLAYGYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTVDGLNDFLQNEVLVFNGKDFEPKDVQKVNIGDRILLKSGDKILIDG
                     ICKKGEASIDTSSLSGENEPCFVGVGGIVNSACIVLDGSIEYEASKLYKDSKLNQIIR
                     LLEFASTKKARLESLVSQISAYFSRTILTLALLCFFFWLFYHKESVEISLVHAISVLI
                     IACPCALALATPVSNLIALGQALKRAILFKDSSVVEKLSKCDIAVFDKTGVLTQTQLK
                     IAEVFLDERLNLNEFYSFVSLSNHPIAKSVAQFLQDKNAKLLNLDFKGLSNIQAKGIK
                     ACLDNTLFLGGSSKFLEDNGIKCKKEFNNSHFIFVRDNEILAYFEFSSVLREGAKELI
                     SYLKQAKIDTMILSGDNERAVEKIAKELGITSFYASCLPQDKMQAIENLSHKKKVLFV
                     GDGVNDALALKYAAVAISLREGSDLAIENSDILLLKNDLLSLKYAIKLSKDTYKIIKQ
                     NLILSLAYNAFTIPLAFLGLINPLIAALSMSFSSIMVILNALRIKNE"
     gene            18273..19571
                     /gene="rho"
                     /locus_tag="SB143_000571"
     CDS             18273..19571
                     /gene="rho"
                     /locus_tag="SB143_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEF9749131.1"
                     /translation="MEKEKKQHQRTHIPVEGYKIEDLKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IRKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRILDLFTPIGKGQRGLIVAPPRTGKTELMKELASAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNISDRRIYPAINIIKSGTRKEELLQGVAELQ
                     KIWAIRSAISQMDDIEALKFLYSKMLKTKDNVELLSIMNE"
     gene            19574..>19713
                     /locus_tag="SB143_000572"
     CDS             19574..>19713
                     /locus_tag="SB143_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749132.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSTSLKYALNHNRLAHAYLFSG
                     LRG"
BASE COUNT         7292 a         3126 c         2484 g         6811 t
ORIGIN      
        1 ggtaaacaac tcaaaagtca aagaatgacc gaacttttag ctaaaaatcg cactcaattt
       61 gacatagagc ttatcgataa aaaaggtgga cttagaaaaa tgttaagtgc tattaaaaac
      121 aagcgtgcac ttggcatact tacagatcaa aattgcaccg ataatgaagg ggttaggctt
      181 gatttttttg gtaaaagagt aaattatcaa gcaggagcta gcatcttagc caaaaaaaca
      241 ggagctttga tcatacctgc ttatatttat caaggagagg atgaaaaatt tcacattaaa
      301 tttttcaaaa cccttgatcc tttaaactct agcctagaag aacttacaaa ataccaagca
      361 aaaacttgtg aagaaatgat ccaatttaag cctgatgagt attttttctt tcatcgtcgt
      421 tttgcaagct atgatgaaaa actttacaaa ggtatcaaat gaatcttgaa aaaataagcg
      481 ttatcatcat agttaaaaat gctcaaaata ccctctttga atgtttaaat tctttaaaag
      541 aatttggaga aatcatactt ttaaacaatg aaagcaccga tgatacctta aaaattgcca
      601 aagaatttca aaaagatttt acgcatttat acatttacga aagcaaattt ataggctttg
      661 gagctttaaa aaatcttgct ttaagccatg ctaaaaatga atggatttta aacatagatg
      721 cggatgagat tttagaaaac gaagccaaag aagaattaaa aaaacttgaa tttaaagagc
      781 aaaatatcct agctttaacg cgcaaaaacc tttacaaagg agaatggata aaagcttgtg
      841 gctggtggcc tgatcatgtt ttaagagtgt ttaataaaaa acatacaaaa tttaatgaaa
      901 acttagtcca tgaaagcttg atcttatacc caaatactca aaaggtttat cttaaaaatg
      961 gactaaggca ttttgctttt gaaagtattg atgacttgct tgacaaactt caaaaatact
     1021 ccaagctttg ggctttgcaa aatttacaca aagaaagtgg aatttgcaag gctttggtgc
     1081 gtgggttttg gacttttttt agaaattatg ttttaaaaaa aggaattttt tacggatata
     1141 aaggctttat cataagtgta tgtaatggtt tgggagcttt ttttaaatat atgaaactat
     1201 atgagctaaa aaagcaaaag ccaaaaactt gcgctttaat aataacaact tataatcaaa
     1261 aagaacgcct taaattagtg cttgatagtg ttaaaaatct agctttttta cccaatgaag
     1321 ttttaatcgc agatgatggt agcaaagaag atacagcaag gcttattgaa gaatatcaaa
     1381 aagattttcc ttgcccttta aaacacattt ggcaagaaga tgagggtttt cgtgctgcaa
     1441 aaagtagaaa taatgctatt aaagcttcta aaagtgaata tataatttta attgatggtg
     1501 atatgatttt agaaaaagac tttgtaaaaa atcatttaga atttgcaaaa cgcaaagtaa
     1561 ttttacaagg ttcaagagta attttaaata aaaatgaaag cgaagaaatc ttaaaaaaca
     1621 ataattatag tttagctttt aataaaaaag attttaaaag ttctaaaaat tcttttttag
     1681 ctaaaattat ctataaattt tcaaaaatag agcaaaaatt ttttgatacc aaggaaatag
     1741 taaggggcag taaaacctgt aatatgagtt tttttaaaac tgattttgat gagcttgatg
     1801 gttttaatga aaattttatt ggttggggta gagaagatag tgaatttgta gctagatttt
     1861 tatttaataa aggcattttt agacgcttaa aatttaaagc tattgcttat catatttatc
     1921 acaaagaaaa tagcaaaaaa atgctcgaat acaaccataa aatttattta gataccatac
     1981 aaaataaaaa gatttcttgg aaaggttaaa atcaatgaaa aaagttggtg tgattgtacc
     2041 tatatacaat gtagaaaatt ttttaaaaga atgcctagaa agcataatta atcaaagctt
     2101 taacaattta gaaatcatac tagttaatga tggaagcact gataaaaact cttttgagat
     2161 cgcaaaagag tatgccttaa aagatcaaag aatcactctt tttgataaag aaaatggagg
     2221 gcttagttca gctagaaata cgggactcga atatttttat aaagaatata agcttgagtt
     2281 ttcagatgaa aaagatgatt tttatacttt tataattgcc aatgaaaatc cacaaaatgt
     2341 ttataaaatt tacaaaagaa aaaatgcttg caaagataaa attttaaaaa ttcctaatat
     2401 tgattactta atttttttag attctgataa ttcttgggaa aaagattgca taaaagagtg
     2461 tgttaaaaaa atgcaaggta tagatgtatt atggtttgat catctatgta tttacgaaaa
     2521 agaaattaaa aacaaagggc aaaatacaag aatgcaaatt tttcaatata aagaagaatg
     2581 tattataagc ccaaaagatt atgcccaaag agctctaaaa gttggttcaa gagatatttc
     2641 ctttagttgg ggtggaatga ttgattttaa ttttttaaaa caaattaagc ttaaatttat
     2701 aaattatatt atcaacgaag atatacattt tggcatggtt ctttttgcta gcgcgaacat
     2761 gatttatgtc ttaccaaaaa aactctataa atgcttactt agaacaaata gtatttcaaa
     2821 tcatgataaa aaagtaacca aagccaatat ttctcattat tataaagata tttatagagc
     2881 ttttgatgaa gatgccaaac tagctaaaga atatttaaaa ctagcaagca gagtaattac
     2941 catgttaaaa ctcatagatt tctttcaaaa taaactagaa aacgaaaata gtaaagctat
     3001 aaaagaagtt tttttaccat tttatgcaaa aaaggctttg aaatttaaca aaacaaatct
     3061 tgatccttta aatcttaaaa atgaactaga taaaatcaag ccctttgcac acaatatttt
     3121 accttatgat atatggaaaa ttttacaaag aattaaaaat atttttaatt aacttgcata
     3181 atgattttat ctatataaga atcttttttt acacttctaa aatgcgttag tttatgtaaa
     3241 aaactttgtt ttttaatctc ctcccaaagc ttgttatcaa atttatcctt agcataaaat
     3301 tgcaataaat ggcattctat atcactttta ttttcaaaga tttcattttt aatataacca
     3361 tttcgtttta gaagttcaaa taaaatttgc tgagtaaaat aataaaaata ttttgagttt
     3421 tcttcttttt gccaaaaata tatcaataaa tctcttaaaa cactaacaat tttattattt
     3481 tcttttgcta ttaaaaaact gtttagaagt ctaaccataa aatcatcatt ccaattaaag
     3541 taaccgtagg aaaaatatgg acttttgata aactttttta gttctttctt atttggtcta
     3601 tgtcttgctc tttcaaaagc aaaaaattcc ctatttctta gatcttgcgg aattttatcg
     3661 cttaaaaata tacttgcatc gcaccaaatc cctccataag tagccaataa acataccctt
     3721 aaaagatcag aaaaaaatac tatagttttt tctccaaaag tctttttttt gattttttca
     3781 agtacaaagt ctggaaattc taaataattt tctatatttt tttcatttaa aatgataatt
     3841 ttatactcac tacccatatg cttctttacc gatttaaaac attgccgtat catatagctt
     3901 gcattttcct cgccttgaaa ccataattgc catataattt tattgtcttt aaaatcttgc
     3961 tttttcttaa aaacgaatga aggaattttg cctttaaaaa agggttgtat ataattttca
     4021 tctaaatact tacttacttt tggatgatct attttgtaag atatatgagc ccttaatttt
     4081 cttcttaaag gttttatagg aattaaattg gttaaattat atattatctt attgtacaaa
     4141 ttcatagttt caaacctttt taaaaattat tttaatataa tatcaaaaaa tatttaaggt
     4201 ttatacataa taatgcaaaa agaaataacc attgttaccg ctttttataa tgtaggcaga
     4261 accacaagaa gcaatgaaca atatttgtct tacttcgatt tttgggcagg cttaaagaat
     4321 aaggtaatta tttacactac agatgatatg aaagaagcta ttttagaaat tagaaaaaaa
     4381 cataatttag aagataaaac tataatcatt acaaaagatt taaaagaatt tgacaaagaa
     4441 aattttgaaa aaatccaaga aacctttaat aactatgatc aaagtttaaa tagaaaacat
     4501 ccaaaaaaca ttgagtgcaa taatgcaatg tattgttatt taatgtattt aaaacctttt
     4561 tttgtagttg atgctataga aaaaaaatta agcagtgaaa atataatatg gcttgatttt
     4621 ggttttaatc acagagatga attttttacc aataaagcag aatttaattt tttactagaa
     4681 aaaccaaaaa acataaatga caaaaaaatt aattttttct caattaaaaa tgaagagaaa
     4741 aatactattc cagcaattta ttacaatatg gaaattttta taacaggaag tattttttat
     4801 ggcaatatca attcttggaa gattttcaag caagattttg aaaaatgttt aaattgtttc
     4861 ttatctttta atattgtaga tgatgatcaa attatgcttt tgtggtgcac aagaaataat
     4921 ccagataatt ataaaattat tagaacttat gaatggtttg gctcgttgct ttcttttatt
     4981 cctgatgata ttaaatcaca tttaaccttc aaaagaaaga atagtaaata ctacaaaacc
     5041 attaaagaag aaatcaaaaa agatatctac aataaacagt attttaaatt tttatttcat
     5101 tctttaaaat atggttatta taaatttatt aataaaaaaa atatagattt ataatcaaat
     5161 gaactataaa tttttaaaaa gcttgaatta ttttagtaaa ataaataaaa tctcattttt
     5221 aattttaaca ataaataaac ttaatataaa ttattttaat aaatgttata atatatttat
     5281 aaataaaaat tatcgccaaa accactcact taaaagtaat taaataagca tgtatgtttc
     5341 aaaaataaaa atcaaaaatt ctgtataata taatagaaat taataaaggt tttaaaaatg
     5401 aataaaaatt taaattttac aaaaaaatct gtattaatag cagggaatgg gcctagtttg
     5461 aaagaaattg attattctct acttccgaaa gaatatgata tattccgttg caatcatttt
     5521 tacgcagaag ataaatatta tacaggaaaa aaaataaaag ctgcattttt tgttattcct
     5581 tattttttta atgagtatta tactatgcaa aaaatgctcc aaaatggtga ttatgaatgt
     5641 gaaaatatag tctgtaaaat gtataatttt caagatagaa aagagaaaat ttttcgtgaa
     5701 aatttcaaat attttttccc agcagctata aatggatatg atgctttctt ttataagcta
     5761 aaagaattaa gtaacatgat agattttgac ttttgctatg aatataacac aacagaaatg
     5821 cttactggca cttatgttat atgttgcgct gttgcatgtg gctataaaga aatttattta
     5881 gctggcatgg attttggaga tgaaaaatat aactatttta gcgaaaaaat tgaaaaaata
     5941 aaagaaagca aaaaacgaac taccaaaatg catcataaaa gtattgattt aaaaattttg
     6001 gattttctac aacagcagta taatgtaaaa attttttcaa tttgtccaaa tagctctata
     6061 aatgcattta tacctctaca tccaatacaa aacaatgaaa atatttttaa acccatagaa
     6121 cgtccaaaag atgctattaa aacccagctt actccaccaa ttaaagctgt aagaagatat
     6181 aaacgacttt atttggaatc caatataatt attaagtttt ttcacgaact tgtgcaagtt
     6241 ccaagacgca taagacatta ttactcaaaa acaagatata caagataggg ataactatct
     6301 atattgtccc ttttctccac ttaatataat cttaacttga ggatcaaaaa aggcttttat
     6361 ggtgatatta taaaataaat ctttactttc attccaagta agtaaatcaa tgtcttgatt
     6421 tttaatcata aatttagatt cttttaaaaa atgatataaa tattccctat aaggaaaact
     6481 tatagcgtta aaattatcag tatcgattgc tttttgaatt tgttttttta tttgatcaga
     6541 attttgtaaa agatttgcac ttgttatttc aaataaataa taacttgtat aaaaaccatg
     6601 gcttttaaat atgcctaaaa acttaaattt ggactttcaa caatcaaatt tttaatatta
     6661 aagccagttt ctttacatat gcctaaaagc gtttggagtg atttttgcat attatattca
     6721 ttaagatttt taaaatctat ccacaattta gtttgcaaag gtcttatttc ttcatctcta
     6781 atcacagcta attttagcaa atcttttaaa tttaaaaata ttgattcctc cctcctatca
     6841 tgtcctatat caaagtaatt tttttctgct aaataatgca catccacttc aaaactttga
     6901 tacttttctt taaaatcatt aaattttttt aaatcatttg tcctatgaag ccaaatttta
     6961 ctaggagatt taaaaggata ttgtcaatca ctgccacaca actttagctc ttcgtcataa
     7021 tttttatttg caaacaatct aattctatct ttattataat tatcgctaaa caagctgcga
     7081 ttgttttcta aatcttccac atctaaacct aaaagatcta aaaatgcatg caaaaaatca
     7141 tcgctcataa aaagtaaatt ttgtgctttt ttgattttat tgattatatc tggatggttt
     7201 tgttttaatt tatcacttgt aaaaatcata aaaggaattt cagccatata tcttgaacca
     7261 attgtttcag tataaccaaa aaaatctcta aaatcataaa cttcatcacc atgatcgcta
     7321 agataaaaaa caatagcttc ctcatcttta aaataattac aaatttcgct tacaacaaaa
     7381 tcattataat agatagcatt taaatagtgt gattttatct ttgcttgcct atcatttagc
     7441 tttgcacttc catttaaatt atctaaacaa ttttctttta aatctttaat gctaaatttt
     7501 tcaaatactt tagagtaacg cttggcgtat tccatatgtg ttccctgtaa atgcaagata
     7561 tgaaattctt tttctttgtg agaaagtttt tttaattcct ctagtatctg ctcgtctctt
     7621 gcaagagttt gtcctgtaaa gaaattgtct aaaaatatag ctttattaga taaccttgcc
     7681 attgattctg gcgcattacc aagcgtagat acagattctt gattactaat ccaataggta
     7741 taatatccac cctcgctcat aatattaaca atatttttgt ttaaaccaag cgatggagct
     7801 attttcataa tttgaaaatg taaaaatttt agaaattgct ggatttgtat gagcatgagg
     7861 tgctataaca tcggtgaaaa caaaaagatt ttcactattt cttaaagcct ctaattttgg
     7921 tgttgttttt aatttataat tatagagact catataattc ctttaagttg attctcccat
     7981 tataacaaca atttttggaa tatttttaga attgataact ttgtaagttt tattttgttt
     8041 ttttaattct cgttctaaat cattaagttg cattaaatac tcatttgcat ttcctcttat
     8101 tgtttttata gcctcaaacc aactataaag taaaaaatca tctataaaat acttatgtgg
     8161 cttttttaca actgaaatca aacatacaag aaaaatgata attttagaaa tatctaaaat
     8221 atgatactca ttaggtaaaa ataacaaacc attataaggg attaaaaata aaactatact
     8281 aaaaataaaa aaccacttaa tatacatatt atcttaaaat caaaatagct tgatataaat
     8341 tcttttgttt cagaaatagt tgtaaacagg atagcttcta aaaaagttgt atttaaaaaa
     8401 gaattaaatt taaaaaataa aaataaattc acaattccta ctataaaaaa taaagccacc
     8461 aaaacaaatt caaatatagt tttaaaaaaa atcaggaaaa aactaataac aaaaaataaa
     8521 atatacaata cactaaaatt acgtcttata atttgaaaca ttctttttga gaataattta
     8581 aaattgaaat aaacttgctt agataaatat atcaaggaaa ataaaataat atttacactc
     8641 aaaacataaa caaaactttt cataaaaaca acatttaata ttaattaatc ccgaaataaa
     8701 aatattataa aaaatttatt gtgacattat tttacttaaa atgtaaattt ctcacttcat
     8761 gcaaattaga tatttatgtt tttaaaaata atatcatatt atttcaaaat gtgcaatttt
     8821 atttctaata ctatttaatt ctttttcttc atctttgttt aaagtaaaca tatgtttttt
     8881 taaagtcaat tttaaatttt taatcatcat ttcttttaaa aattcaatat caagaatttt
     8941 tggttcaaag tcaattcgat tgtctttcaa atcattaaaa gtataaggtt ttaaaatacc
     9001 ctttaacgct gaaaatctat cttcataaac tttatcttct tgcaacaaga taacaggaat
     9061 tcctaaggct atacaaggcg ctgcacaatg aagagctgtg gttataacca gttttgcctc
     9121 tgatgcatat ttttctaaaa tatcttgagc ttctttatag cattcttgcc attcattttt
     9181 aagatttctg tttttaattt ttatagcttt ttgattaatt tctattgcct cctttttaat
     9241 aaaatcggga agcaaggaac tcatttcatg atttaaatta accaaaaata tagaattttg
     9301 ctttgcacta acttctcttt tcggtaaagt caaagttaaa cacctagaaa aataagcatt
     9361 tgcacctttc ttattgaaat aatctaaagt agataaatct ctacatccta tttcaaaatc
     9421 tttaaaatca acatttaaaa catcaaaata ctcttgcatt tttttagtga aatgagtccc
     9481 tatataaact ggaaaaattc gctcattagg caaaaaatta taatcatccg caaaccaacc
     9541 ttgcataata catatacttt cttttttatt ataaagacta aaactatctc tattgtaaaa
     9601 atgaaatttt gcatttttat caattagctc tatgagactt cttgtagcaa ttgtctgaat
     9661 ataatctcct aagttatatg ctttaatccc gggaatatac aagtatttaa aaagacaata
     9721 atctcctcct atttcctctc tccttggata ttttttcata ccaaaactag aaaatttttt
     9781 attaatcaaa tgagagtatt tttttaaaat aaaattttta ttttgatgat tatacatata
     9841 aattttatac ctataatgat cttttttata aattaaagac aatatttgcc actttaaaac
     9901 acgtattttt ttaaaaatca tttttaatat ccctataaat tatcaatcct tctttttaaa
     9961 tccaactctt ctttatttaa aacatcgaac aattgtttgt aaaatttatc attttcaaat
    10021 tctaaagaaa gcttttttat cagctcattg ctttttactt tatcttgata attctgccat
    10081 aaaatttctt tatttttgtt ttcatatctt ccatttggat taaattcata atgataaata
    10141 caagttttaa aaacagctat tttctcgcaa aacataaaat aaatataaca aaaaagcaca
    10201 tcttcgccgt aactcaaacg ctcatctatt ttaatttttt caaaactttt taagatgata
    10261 tcttttttaa agcacttcgc ccaaaccgac cagcaaaaat gcctttgttt gcttaagaat
    10321 tctaaaaatt ccttttgatt aaaaacttca tcttgtttaa aacgataaaa ttgtttggtt
    10381 tttactctat gcacaaaggc atcaaaacaa agtaaatcaa aacctttttt catctcttta
    10441 aacgctattt cacaagcatc aagcgtcaaa aaatcatcac tatctaaaaa cattataaaa
    10501 tcagaactgg aatgtaaaac tcccaaattt ctgcttgcaa aagtgcctaa attttcctca
    10561 ttttgaaaga tttttatcct tggatctttt ttagcaaatt ctaaaactat atttaaacta
    10621 ttatctttac ttttatcatc aataatcaaa atttcaatat cttttaaagt ctgatttata
    10681 caactttgca aagcccttga aataaaatca caagaattaa aaagcgggat tatgatcgaa
    10741 agttgtggca tatttttcct aaattttgtt aaaataataa aaacaattct atcaaagttt
    10801 aggaaattta tgaaaatttt tatacatctt cccacttggc taggcgacgc agtgatggct
    10861 tcacctgctt tatacgctat aaaagaatat tttaaaaatg cccaatttat cctttatgga
    10921 tctttggttt ccacagcact ttttaaagaa tttcctaatt ctaaaatcat catagaaaat
    10981 aaacaatccc gctacaaaca agccctatct ttacgcaaag aacttggtaa aatcgatctt
    11041 agctttgctt ttagatctgc gttttcttct aagattatct tgcatattct taaaacaaga
    11101 caaagatatt tttttgacaa aaataagcac aaagaagaac atcaagtttt aaaatacctt
    11161 tattttatag aaaattcact agatatcaaa gctcattcta aggatttaaa actccctttt
    11221 aaattaaaat ttcaaaatcc tattgtttta aaaaatggca aaaaaatctt aggtttaaac
    11281 cctggagcaa gctttggaag cgctaaaaga tgggatgcga gttattttgc taaagtggct
    11341 ttaaatttca gccaaagtca tgaaattgta atctttggcg caggaaaagc cgaacaagaa
    11401 ctttgtaatg aaatttatca aattttaaaa gaacaaaaca taaaagtaaa aaatctttgc
    11461 aataaaacca ccatcaaaac cctttgtcaa aatatcgctt tttgcgatct tttcatcaca
    11521 aatgacagtg gacctatgca cataagtgcg gtttataagg taaaaaccgt ggctattttt
    11581 ggccctacga aatttaccca aacttcacct tggcaaaatg aaaacgcaaa attagtgtat
    11641 ttagatctag cttgtatgcc ttgtatgcaa aaaacctgtc ctttaaaaca ccacaaatgt
    11701 atgaaagatt taaagcctca aagggttata gaagaagcta gaaatttact taaaaaccct
    11761 catctatgat ctgacaaagc gtgtgtatga ttaagatatg catttcttga attctagccg
    11821 tatcatcact tggcacgaca agattatgat cgcaaagctc attcatcttt ccgcctcctt
    11881 taccgctaag ccccaagcaa agcatattta actctttagc ctttttaaat gcttctagga
    11941 cattaggact ttttccactg gttgaaatgc ctattaaaat atcattttca tttcccaagg
    12001 cttctacttg tcttgaaaaa acaaactcaa aaccataatc attgcctata gcactaagtg
    12061 ctgaagtgtc tgttgtcaaa gctatacccg ctaaagcttt gcgttctttt ttatatctgc
    12121 cgctaagctc cgctgcaaaa tgctgtgcat cagctgcact tccaccattt ccgcaaatta
    12181 aaattttacc acctttttta agacattcac ataaaagctc gcctatttta gcgatttgtc
    12241 cttttaaaat ttcacttgct ttggtaactt tttgatgttc ttgccattct ttttctacta
    12301 aatttatcat tttttatcct taatcttttc tataatctta ctcgtactaa atccttcttc
    12361 aaaatcgatt aattcaactc ttgaaatcaa atttgaacct acaacaagct tatctttata
    12421 atcagctcct ttaaccaaaa tatcaggctt taaaaagctt ataagttcta aaggtgtgtc
    12481 ttcatcaaaa atcactacaa aatctacaaa ataaaaagct gccaacatac aagctctttg
    12541 aaactctgaa tttacaggac gactctcacc tttgagtctt ttcacactcg catctgagtt
    12601 caaaccaacg attaaaatat cgcccaatct ttttgctttt tcaagatatt ttatatgtcc
    12661 aaaatgtacg atatcaaaac aaccatttgt aaaaacgatc cttttatcac tttgttctaa
    12721 aatctttaaa agctcttctt tggttttgat ctttttttca aagcccacgc gtttaaagct
    12781 tttcatctca tcaaaactca cactcacgct gcctatttta ctcactacaa tagctgctgc
    12841 ttcatttgct atctcacaag ctttaaaaat ttccactcca ctagctaaac aaaaagccaa
    12901 aacagcgatc acgctatcac ctgctccagt tacatcataa acttctaaag ctttagcagg
    12961 agctatgcgt aaattctcat caaaaaaagc aatccctgct tctgaaagtg tgatgataga
    13021 ataacgcaaa ctaaaatctt cttttagttt tttaatgcct ttttctaaat tttcaccctc
    13081 taaattttca aatttcaaag cttctagggc ttctttttta ttgggtgtta aaagcgttgc
    13141 tccactgtat ttaccaaaat catttccttt aggatcgatt aaaataggta tatttagctc
    13201 atttgctttt tggataaaag ccttacacac tttaggcgtt aaaactcctt ttgcataatc
    13261 acttaaaacc acagctttaa aattttcaat tcttttgtta aacaattcta caagctcatc
    13321 ttctagcaaa atcgcactcg tatcctcttc atcaagtctt aaaacttgct gattatgtgc
    13381 catgatgcga tttttaaaag gggttttgcg tcctttttgg attaaaaatt ctccttttaa
    13441 attttctttt aaaaatttcc cactctcatc atctcctacg acaccaagcg caaaaacatc
    13501 tgctcctaga ctttttaaat ttgcataaac atttgccgct ccgcctagtc ttttatcttc
    13561 ttttaaggtt tttgccacta aaacaggagc ttcaggacta atgcgcgaac aatcacacca
    13621 agtgtaatta tccaccatga aatcccctat gataagaatt tttggatttt gatcacttaa
    13681 aaattcaagc attcacttcc ttttcaaaaa gtcttttgat ttcttctaaa taatccctta
    13741 taccctcttc taaactaaat tttggcttat aaccccaagt ttcatctaat tttgcttgag
    13801 tatgaaattg ataagatttt gcataaggat tagggatata ctcgcaagtt aaatttgtat
    13861 gaagttcttt ttgtaaaata tctactatat cttgaaagct tcttgctact ccacttccta
    13921 cattataaac tccgcatttt gattcaagag cgattaaatt tgcactgata acatctttaa
    13981 tataagtaaa atctctaaaa atttgatcac ttccttcaaa taaacgcgga ttttttccag
    14041 ctaaaatttg atgagcaaac tgcaccacca tcgaagcggt tttattttta taaaactcac
    14101 ccttaccata aacattaaaa tacctaagtc ctaccaaatg ggctttatcg tagtattttt
    14161 tagctagctt atccatcata aatttggaaa atgcgtaagg atttttaggc tcttcatcct
    14221 tgcctacggt ttgtgggctt tttgcatcgc cataaacaga agctgaacta gcataaacaa
    14281 gctttgcgtg aagttttatg ctgagttcta taaaatcttt aaaagtatta agattcgtct
    14341 gtaaaacctt agtttgatca aaaaccgttg tatctgaaat cgctgcttga tgaaaaatca
    14401 cttcgggttt aaaatcttcg atttttttta aaaccttttc atcgttaata tcacccacaa
    14461 aaagctcacc attaaaatcg agtaaatttt taaagtgtcc aaaactttgc aaatttccat
    14521 tttcaaaagt cgcataacta cgcattttat cgatgattaa aatttcatgc ttatcttgta
    14581 aatttaaggc aagttgtgag cctataaaac ctgcgcctcc tgtgattgct attttcatct
    14641 atcttccttt tttttgaaaa aatctaaaag ttcgtttaaa tttttaaatt gtctaaaaaa
    14701 atcgccttct ttttcttctt catttaccaa acacaaagtg ccaatttgtg cattttttcc
    14761 agcttgcata tcgctaagat tatcccctat aaaaatagaa ttacccatat ctatatcaaa
    14821 ttcttcccta gcttttaaaa gcatccctgc cttaggcttg cgacattcac aaccttctaa
    14881 atgcggacaa tgataaattt tatcaatctt tatattctct ttcaagaatt cattaagcat
    14941 aaaatcacaa agcttaaaaa agtcttcttg ggtgtaatat cctcttgcaa tgcctgattg
    15001 gtttgtggct acaaaaagca agtatttttg cgctaaaaaa tatctacaaa gctcaaaaat
    15061 tccatcacaa aactcaaaat cctgaatttt atagatatat tttttatcta tatttataat
    15121 gccatcccta tctaaaaata acgcttttct tttcatagaa tatattataa tataattcaa
    15181 attaaagaaa ataaacattt tgatattttt aagaaaaatg ttaaagttaa aaatatataa
    15241 ttattatgta ttaaaacttt tcaaggagaa tataatgaaa aaattattag tagtttctgc
    15301 tttagcatgt cttggcgtat cagctttcgc cgcagatgga gctacacttt ttaaaaaatg
    15361 tgcagtatgc cacggcgcaa aagcagataa agtttatcta aacaaagttc cagcattaaa
    15421 aagcatctct tcagctgaaa gacttcaata tatgaaagaa tactcagaag gtaaaagaaa
    15481 tgcttatgga caaggcgcta tcatgaaaat caaccttaaa ggtttaactg aagaagattt
    15541 caaagctatc gaagcttata tcgaaacttt ataattttaa ggctttcaaa atttagaaag
    15601 cctttatttt ctcttttcta aagcttcttt ttttcttttt tctaattcta tagcatcgcg
    15661 caaagcatcc tcatcatcat ttagagtagt aaatttataa tcatcatcaa attgtttagt
    15721 ccttatcccc caaagcaagg tagccagtat aataaaaaaa cccagtattg aaacccctat
    15781 catcatcatg attacactat tcatttttta tccttaaagc atttaaaatc accattatac
    15841 tactaaaaga catagaaagc gctgcaatta aaggattaat taagcctaaa aatgccaaag
    15901 gtatggtaaa agcattgtaa gctaaagaaa ggattaaatt ttgcttgata attttataag
    15961 tatccttaga aagcttaatg gcgtatttta aagaaagcaa atcatttttt aaaagcaaaa
    16021 tatcactatt ttcaatcgcc aaatcactcc cttctcgcaa agatattgcc acagcagcat
    16081 attttaaagc caaggcatca ttgactccat cgcctacaaa taaaactttt ttcttatgac
    16141 ttaaattttc aattgcttgc attttatctt gaggcaagca ggaagcataa aaagaagtaa
    16201 ttcctaattc tttggcaatt ttttcaaccg ctctttcatt atctccactt aaaatcatcg
    16261 tatcaatctt agcttgttta agataagata taagctcttt agcaccttct cttaatacgc
    16321 ttgaaaattc aaaataagca agaatttcat tatcacgcac aaagataaaa tgagaattgt
    16381 taaattcttt tttacatttt atcccattat cttctaaaaa tttcgaactt ccgcccaaaa
    16441 ataaagtatt atcaagacaa gctttaatgc cctttgcttg aatattgctc aaacccttaa
    16501 aatccaaatt taaaagcttt gcatttttat cttgtaaaaa ctgcgctaca cttttagcaa
    16561 taggatgatt tgaaagcgat acaaagctat aaaactcatt taaatttagc ctttcatcta
    16621 aaaaaacttc agctattttt aattgggttt gagtaagaac tcctgtttta tcaaatactg
    16681 ctatatcgca ttttgaaagt ttttcaacca cactagaatc cttaaataaa atcgctcttt
    16741 ttaaagcctg acccaaagcg ataagattgc ttactggagt agctaaagct aaagcacaag
    16801 gacaagcgat gattaaaaca gaaattgcat gaacaagtga aatttcaaca ctttctttat
    16861 gataaaacag ccaaaagaaa aaacaaagca aggcaagagt taaaatggtg cgagaaaaat
    16921 aagcagaaat ttgagaaacc aagctttcaa gcctagcttt tttggtgcta gcaaattcca
    16981 aaagccttat gatttgattt aatttagaat ccttataaag cttgcttgct tcgtattcta
    17041 tacttccatc tagtacaata caagctgaat ttacaatgcc acctacacct acaaaacaag
    17101 gctcattttc gccacttaaa gaagaagtat cgatacttgc ttcacccttt ttgcaaattc
    17161 catctatgag aattttatcc ccacttttaa gtaaaatcct atctccgata ttgacctttt
    17221 gaacatcttt aggctcaaaa tctttgccat tgaaaaccaa aacttcattt tgtaaaaaat
    17281 catttaggcc atctactgta tccaaagcgc gttttttgct aaacatttca agatatttac
    17341 ctataaaaac aaagcaaata atcatagcca cagaatcaaa atacacctcg cctactctaa
    17401 aaaacatcgc ccataaagag tatccataag ccaaacttgc tccgcttata accaagctat
    17461 ccatatttaa actacgcatt tttagagctt taaaagcact tttataaaaa tttgaacctg
    17521 tataaaaaag cacaggagag caaaggataa attcagcaaa atttaaaata tctttaatat
    17581 ccctatccat accgctaaaa aatcccgcat attttgctac tgctatccac atgatattca
    17641 tcacacaagc aatggcaact atgagcttag agtaaaattc tcgcttgatc aaatctgctt
    17701 ttttggaatt tttagatgga tcataagcac tggctttata tcctatactt tcgataagat
    17761 ttaaaatttg cgccaaagaa acactttgtt catcaaaaac aatgcgtgct ttatgcgaaa
    17821 gatgattgat atctaactcc aaaattcctt cttgtttggt taaaactctc tcattaagcc
    17881 aaacacaagc ggagcattct atgccgtgta tcatgagata aatttcgcta aaaccctctt
    17941 tggttttggt gataaactca tcataatttt tgttagaaaa ttccaagcta actggcttta
    18001 gtgcgttatt gcccaatctt tcgtaaaatt catccaagcc actttcatgt aaaatttccc
    18061 aaacactcaa acagccccta cagcaaaaaa atttaccctt agcttctatc atttgagatt
    18121 tttgataatc tagtctacaa tgttcacatt tcataatcat tctttaaaaa aatatttttt
    18181 ataattatag acaaatttga caaaaagtat atttttttac taaaatcacg gttttaattt
    18241 gctacaaaat tactgctttc ttgcgaggac ttatggaaaa agaaaaaaaa caacatcaaa
    18301 gaacccacat tccagtggag ggttataaaa ttgaagactt aaaactactt gacttagaaa
    18361 acctagttaa aatagctaat gaatgcgaga tagaaaatcc tagagaattt cgccgtcaag
    18421 aactcatttt tgaaatttta aaagcccaaa ccaaaaaggg tggttttatc ctttttacag
    18481 gaattttaga aatttcttca gaaggttatg gctttttaag gggtatggat tcaaatttaa
    18541 gcgatagtgt caatgatgct tatgtttcaa actcacaaat tcgtaaattt gctctacgcg
    18601 tgggcgatat agtaactgga caagttagag agcctaagga tcaggaaaaa tactatgctc
    18661 ttttgaaaat agaagcgatt aattatttgc ctttgcaaga agctaaagaa agacctttat
    18721 ttgataactt aactcctatt tttccaacag aaaaaatcaa actcgaatac gatgctatga
    18781 aattaactgg aagaatttta gatcttttta cccctatagg taaaggacaa cgcggactca
    18841 tcgtagcacc gccaagaacg ggtaaaacag aacttatgaa agagctagca agtgcgattg
    18901 ctaaaaatca tcctgaaatg catttaatcg ttcttttagt cgatgaaaga cctgaagagg
    18961 ttactgatat gcaaagatgt gtaaagggtg aagtgtttag ctctactttt gatttgcctg
    19021 cttataatca tgttcgcgtg gcagaactag ttatcgaaaa agcaaaaaga atggtagaaa
    19081 caggcaaaga tgttatcatt ttgctagata gtatcacaag gcttgctaga gcttataaca
    19141 ctgcaactcc aagcagtgga aaggtactaa gtggtggggt agatgctaat gcacttcata
    19201 aacctaaacg cttttttggt gcagcaagaa atatagaaaa tggcggatct ttgaccatag
    19261 tagcaactgc acttatcgac acaggttcaa gaatggatga tgtgatcttt gaagaattta
    19321 aaggaacggg taatagcgaa atagtcttag atagaaatat ttcagataga agaatttatc
    19381 ctgcgattaa tatcatcaaa tctggaactc gaaaagaaga acttttacaa ggagtggcag
    19441 aactacaaaa aatttgggct attcgttcag cgatttctca aatggatgat atcgaagcgc
    19501 ttaaatttct ttattcaaaa atgttaaaaa ctaaagacaa tgtagaactt ttatctatta
    19561 tgaatgagta gagatgcttc aagccttagc gattaaatac agacctaaaa cctttgatga
    19621 actcatagga caaaaaacag tcagcacaag cttaaaatat gcattaaatc acaatcgcct
    19681 agctcatgct tatctctttt caggcttacg cgg
//
LOCUS       DARAII010000018        19525 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.018, whole genome shotgun sequence.
ACCESSION   DARAII010000018 DARAII010000000
VERSION     DARAII010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19525
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.018"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(112..1461)
                     /locus_tag="SB143_000573"
     CDS             complement(112..1461)
                     /locus_tag="SB143_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEF9749133.1"
                     /translation="MRTYFSKIGFILAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLSIGFSIFLAEVSMGRLSRSDLANAYYTLAKSHARRWRYGGIFTLGGIFVLSFYL
                     VIMGWVLKYALTSLYYLPKNLEQAGSDFSTLISADLSNSILFFSLSFFLTLLIVSKGL
                     IKGIERLNVVIMPSLFIMLIFMLLYCMSFQNGFKQAFSYLFYPDFSNFKLSSIAEALG
                     LAFFTLCLGIGCIVTYSAALSKKINFIKSSIFIVSINLLISFIMGLIVFTFIFEFEAN
                     PNIQGPGIVFVSLMSLFNELGILGYVLAFCFFLALFFAGITSAVSMIEPLTFYVVNNY
                     KISRIKALSFIGFIVFVLGICCILSLNTHFSSLFSIFGKDFFTLLDKVTSNILLPLGA
                     IVSSIFVGFFVDKKRIYKIFSKFVNHQIFTIWLFFIRFISPIAIICIMCYQIFVKIS"
     gene            complement(1475..2809)
                     /locus_tag="SB143_000574"
     CDS             complement(1475..2809)
                     /locus_tag="SB143_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEF9749134.1"
                     /translation="MNSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYAGFTMIGAILIVSFYT
                     LVIGWILKYAYLSISGNLYSDLNTSSAEFGKLISSDFVSQFVCFTLIFLIVFYTVSKG
                     VKNGIEKLNVWMMPALFILLVLMLIYAMTKDGFMMAVEFLFVPDFSKISTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPERTNFITSTLNIIFINLLIGLLMGLVVFTFIFEFGFD
                     ASKEGPGLIFVSLATLFQKLGAIGHILGAAFFISLIFAGITSAVSMIEPFAFYLINSF
                     GMSRKKALILIGIIVYTLGILCILSSLDSTAFKIFGLSVFDLLDTLSSKIIMPLGGIL
                     AAIFVGFVIKKEALQILFGPYMKGIFFELWYIFLRFISPLAVIVVMISAFLK"
     gene            3053..3391
                     /locus_tag="SB143_000575"
     CDS             3053..3391
                     /locus_tag="SB143_000575"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEF9749135.1"
                     /translation="MKKIFFLFLALAATAFAAEANAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVFA"
     gene            3448..3533
                     /locus_tag="SB143_000576"
     tRNA            3448..3533
                     /locus_tag="SB143_000576"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3482..3484,aa:Leu,seq:gag)
     gene            3732..4931
                     /locus_tag="SB143_000577"
     CDS             3732..4931
                     /locus_tag="SB143_000577"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012798.1,HMM:NF024750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEF9749136.1"
                     /translation="MLNDTKIKALKAKDKKYYIADFDNLLICIYPSGKKTFIFNYKCP
                     KTLRYKRITLGEYPTLNLANARKQRDNLKVNLAENDSIREKYEITFKELALEKMDLKK
                     LELSEKTYKSYMSYLQRFAFGIYGEIILDKLQIKDILKSFEKFRKENIREGADKFFTL
                     LNEIFRHGVIKEYIKSNPMANLNRKELLINKASKNHATLLETKEIKALVDNIIDYKGY
                     ISVKIAAMFSLLTAQRSFSIRSAKWEDIDLENGIWYIPQEDMKMKRAHTIPLNSQCVY
                     MLKKYKEMSINTGYLFYSLRSKSEIISDNTIRSMFRRMGYSNDDFTPHGFRAMFSTLA
                     HENRNKHQMSSDIIELCLAHVEKNKIKSAYNHALNLKEKAILMQWWGDYLDEIADLNQ
                     QVRNIFL"
     gene            complement(4858..5097)
                     /locus_tag="SB143_000578"
     CDS             complement(4858..5097)
                     /locus_tag="SB143_000578"
                     /inference="COORDINATES: protein motif:HMM:NF024139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEF9749137.1"
                     /translation="MIRLDIGDYYTRKEVANLLKVKEPIVHKYAKQGKFREFKQHRNC
                     SGLYPKQDIENFIKKYFGLVDLDQQSHRDNLPTTA"
     gene            complement(5090..5632)
                     /locus_tag="SB143_000579"
     CDS             complement(5090..5632)
                     /locus_tag="SB143_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEF9749138.1"
                     /translation="MGILKRLDETIIIENDRKSEKELVEYCILEGISLNNANLENVNL
                     SGLDFDNVFINGASFKNTNLSNISSKNASFIDCDFSGVRLYGCNLLDTEFENCIFENV
                     DFRDCIGDMKNIFTVAIDTYVMNFSKTHLSLGCQIKTIREWRNTSVDNIEDEEQKWLW
                     GYYKDTIFEIIDKRLGVEND"
     gene            complement(5634..6344)
                     /locus_tag="SB143_000580"
     CDS             complement(5634..6344)
                     /locus_tag="SB143_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEF9749139.1"
                     /translation="MSNAPVIINNVEVNLNIKENKVFINSLDLAKVFNKNHKDVLETT
                     KNQPQNDFTESNFILSTYKDKKGELRPCYNLTRDGFSLLVMGFTGEKAYKWKIEFIKA
                     FNEMEKRLRNIEYEKHDKLAFRQSLGYKSQLAQQKEKYENKIKALQYDLENKKELSFK
                     RKLSKEELLELRKILARDYGMICIKEWEMSLVAEKIALESTKMTTWDAVVKKLKQSLD
                     YWQNYEEYEEKWRKILRR"
     gene            complement(6728..6958)
                     /locus_tag="SB143_000581"
     CDS             complement(6728..6958)
                     /locus_tag="SB143_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEF9749140.1"
                     /translation="MTAQEIKEFCKEQGLTYKQLGELIGMSEGGLQNAIKKDSISDQT
                     TKAIELLKEIEILKEQLADYENLKQLLKKALF"
     gene            complement(6960..7184)
                     /locus_tag="SB143_000582"
     CDS             complement(6960..7184)
                     /locus_tag="SB143_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749141.1"
                     /translation="MTNIKDIKKIKITCKECKSEFSMFIGHSLYVCPICGNNFGINQL
                     NDPFFRIKQAFECFTNPKNCDIELVCEIKE"
     gene            complement(7565..7741)
                     /locus_tag="SB143_000583"
     CDS             complement(7565..7741)
                     /locus_tag="SB143_000583"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749142.1"
                     /translation="MLELIFNTGRNIGLGIFVNGAFALQFSEVPQSQATYAIAEGILI
                     MFLSGLGEIKSKRS"
     gene            complement(7839..8216)
                     /locus_tag="SB143_000584"
     CDS             complement(7839..8216)
                     /locus_tag="SB143_000584"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749143.1"
                     /translation="MSENIELFESYTAKTLGELYSTFPIPSDFNFFDFIPKLEYEEFL
                     THQLNAYHTINYLKNNHFLDFESMDLESGKVKKAILKPKALELLKQDGLGVQLRKALS
                     TGRDELIRSIVNRALEMSLKFMF"
     gene            complement(8213..8446)
                     /locus_tag="SB143_000585"
     CDS             complement(8213..8446)
                     /locus_tag="SB143_000585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749144.1"
                     /translation="MQEETITYARGRLTELKDKKDELQRLIKDSKNLAIKNIQNDDLK
                     GARLYIDKLELYFDELLKTNTDLNLLCNKWGFK"
     gene            complement(8456..8749)
                     /locus_tag="SB143_000586"
     CDS             complement(8456..8749)
                     /locus_tag="SB143_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749145.1"
                     /translation="MENFKAFKLISKRIIKTLLNDFPNQSILFSDDFNKDCKEYKIDF
                     SSCIHFLKECKVLKYDKENNGDFSGVLISPKAYLYFSKNDLNDIDDLIEFCMR"
     gene            complement(8785..9540)
                     /locus_tag="SB143_000587"
     CDS             complement(8785..9540)
                     /locus_tag="SB143_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEF9749146.1"
                     /translation="MKLNLYNDHFQNFKRYNIPKAQLVIADIPYNLGINAYASNSAWY
                     IDGKIANGESDKAGKAFFDTDNDFRVAEFMHFCSKMLIKEPKEVGKAPCMIVFCSFQQ
                     MSPLIELAKRYGFNHYINLTFRKKSSASVLKANMKIVENCEYGLILYRDKLPKFNNGG
                     RMIMSCIDWLYDGKSIPKIHPTQKPIKLLEYLIRLFTDAGDVVIDPCAGSGSTLLAAA
                     NLNRKAYGFEIKKDFFKSANEIMFKHIERSLFA"
     gene            complement(9521..9799)
                     /locus_tag="SB143_000588"
     CDS             complement(9521..9799)
                     /locus_tag="SB143_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749147.1"
                     /translation="MKVCRSNYLEIVKIVPFSERRSCFCHFLRSNGIAIEKINYKNHI
                     SKKELKKAYKIYKSKPSGRNYFHEEKLIVKAFEDVEKFLRSENETKFI"
     gene            complement(9780..10475)
                     /locus_tag="SB143_000589"
     CDS             complement(9780..10475)
                     /locus_tag="SB143_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749148.1"
                     /translation="MLPAFKASFEVANYSPSVEYLSEGGLYSGVFRKAFLYDKLASDG
                     SNNTFICFEFLTRKEQKLAIFNLFVAKNNDFSQINENGEKENYLGFRQLNAIMKFFGI
                     DELDFSEKGNENVFGVQTEVIYLNSLVNKLLVLGFGTKEYLNKNRELANTIFLDKIFN
                     EKMQNIDEFQNNKEPLSIKSFKARHKSLNNDNNKSFIPKENQSYNPYGNEVKNNNNEK
                     YIEIGDDDESLPF"
     gene            complement(10475..11209)
                     /locus_tag="SB143_000590"
     CDS             complement(10475..11209)
                     /locus_tag="SB143_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749149.1"
                     /translation="MSNEVILKEENKLEINFNPYELALVKGDLSKLSDVERASYVKNL
                     CESLGLNMLTKPFEYIVLNGKLTLYANKSATDQLRQIRKVSITKTEVAQVGDIYMVTA
                     YAATPDGRTDCDTGALNIKNLGGDNLANAIMKAITKAKRRVTLSICGLGMLDESELET
                     IKEKRFLNPNEDLKVWGSDEKAIENKAKEIKALGAELRKFMSDNGLNTGEQNNFIKKH
                     SLFTSEKIREVLSNKDEFLTQLKGEL"
     gene            complement(11213..11881)
                     /locus_tag="SB143_000591"
     CDS             complement(11213..11881)
                     /locus_tag="SB143_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749150.1"
                     /translation="MCQITRSFLNTEVAYNYAVDNTTIMSHKNLHSDELIENIHYFYD
                     FEQTKGGRQRVIKWTLEGVYMLGFFIKSPKAKEYRKKVAKLLREQTQARFKTLSDENL
                     RLNSLNHHQKIGYKSQLAQQKEKYENKIKALQYDLENKKELSFKRKLSKEELLELRKI
                     LARDYGMICIKEWEFEFLAEKIVLESTKMTTWDAVVKKLKQSLDYWQNYDEYEEKWKK
                     ILRR"
     gene            complement(12047..12277)
                     /locus_tag="SB143_000592"
     CDS             complement(12047..12277)
                     /locus_tag="SB143_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEF9749151.1"
                     /translation="MAEEKENIVKKVCKELNITQRQLSEMLEIPESTIARWKSGDLPR
                     LTELFLKTMLENIELKRKLETIKKAHKIISEL"
     gene            complement(13102..13293)
                     /locus_tag="SB143_000593"
                     /pseudo
     CDS             complement(13102..13293)
                     /locus_tag="SB143_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863571.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(13691..13921)
                     /locus_tag="SB143_000594"
     CDS             complement(13691..13921)
                     /locus_tag="SB143_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEF9749152.1"
                     /translation="MEKENIVKKTCKELGLTYRQLGELIGISEGRVKQLAIGEVGEQV
                     EKACQMLIKIHKLEAELNEQKQLKTLLKNFIS"
     gene            complement(13923..14132)
                     /locus_tag="SB143_000595"
     CDS             complement(13923..14132)
                     /locus_tag="SB143_000595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749153.1"
                     /translation="MKSYKITCRNCDTQIIAKVEQSILFCPACHTNFFNSYDEAPFKT
                     LRQSLKSFEDKSSVLKFEFITDEKE"
     gene            complement(14135..14350)
                     /locus_tag="SB143_000596"
     CDS             complement(14135..14350)
                     /locus_tag="SB143_000596"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749154.1"
                     /translation="MLNLKSLEITCKQCKTKITLDIGKTVIVCPLCNNTFYNSYDEAP
                     LSKLGNILQSLKEHKKAEFRFITDEKE"
     gene            complement(14399..15253)
                     /locus_tag="SB143_000597"
     CDS             complement(14399..15253)
                     /locus_tag="SB143_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HEF9749155.1"
                     /translation="MNCKIIDLEQGSVEWLNFRKGKIGASMVASCVGIKGAFNSKEEA
                     RDIILGLKEVYQNEAMRRGNEYEPLIRARVEFLHSVSITPVVLQSLENEMFIASLDGI
                     DENGIIYEFKYSQDEYDFIKRNKKPSDKYYAQVQFGLYISGKEKCIFVAMNKEEEIVE
                     CEVLRDEAYQEWLVKNIKEFILDYIIDQKSEYKELEDTKAKNLTIEIIRLENTIKPIK
                     EKLESLKKELIALANGEKARCLDITIYPQSRTTIDYKGFLEQKNITVPKEFYKESTSM
                     CLKIKKGA"
     gene            complement(15255..15482)
                     /locus_tag="SB143_000598"
     CDS             complement(15255..15482)
                     /locus_tag="SB143_000598"
                     /inference="COORDINATES: protein motif:HMM:NF025456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749156.1"
                     /translation="MSVTTISQEKQVLNILLNKGKIDNFYCIDTRITTRLGAYIYNLR
                     NKGYAIETVRNKETRNTFYILKSTPKIKKAG"
     gene            complement(15473..15730)
                     /locus_tag="SB143_000599"
     CDS             complement(15473..15730)
                     /locus_tag="SB143_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749157.1"
                     /translation="MFLIFKKNEKIRNLEKEVQRLKGVIALKDTAINEMSLKLEEEIK
                     INVKLSNFRIKILDALGLIGVFKNDDKAIKEVKRLKEKECQ"
     gene            complement(15721..15990)
                     /locus_tag="SB143_000600"
     CDS             complement(15721..15990)
                     /locus_tag="SB143_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749158.1"
                     /translation="MKAYHTKEQVIIKLSKDEYRKEMKLNKSLKDENKSLKTEISNLE
                     NEKIELLKELKDQIEANMKNIKEISSLQNKIYELLYAKERSKLCS"
     gene            complement(16830..17102)
                     /locus_tag="SB143_000601"
     CDS             complement(16830..17102)
                     /locus_tag="SB143_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749159.1"
                     /translation="MSFTDLYFDREEKRISNYARELVKDELESRENFADIFNSLQEFK
                     NILKVSLEDDEDIAASLQAYGDEFINDTYDLLEKVRKFEKKYEKLY"
     gene            17154..17303
                     /locus_tag="SB143_000602"
     CDS             17154..17303
                     /locus_tag="SB143_000602"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749160.1"
                     /translation="MDEIQSLKAQLNNLLLRVSELESKVATLEKRLNDKDFQVLNETP
                     NLLEK"
     gene            complement(17284..17475)
                     /locus_tag="SB143_000603"
     CDS             complement(17284..17475)
                     /locus_tag="SB143_000603"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749161.1"
                     /translation="MLEVKLDLRPDIKKMLEIAFERNYSKSYASLEEFLANVLHNAVK
                     NLITKEAFENKGFVISLKD"
     gene            complement(17858..18913)
                     /locus_tag="SB143_000604"
     CDS             complement(17858..18913)
                     /locus_tag="SB143_000604"
                     /inference="COORDINATES: protein motif:HMM:NF013793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749162.1"
                     /translation="MAKSICFFNHKGGVSKTTTTYNIGWALSKLGKKVLMVDLDPQCN
                     LTGLVLSSKALDDDFMASFYQNRQFITFEPIIEKIISGANSYGSANDGEIFPVNDNLF
                     LLAGSLNLSQLDSQITTALKITAGIPILGNIITCFFEVLNKIAINNEIDYVLLDLSPS
                     ISGLNQIALMGSRYFIVPTSPDYFCLQAIYSLSKTLKLWHKEIKDFKQATGVKGIPNN
                     PLFIGAIQQRYRLRNEAPTKAFEKWISAIRDAINTTLVTELSNINCVIEKEKFENGIK
                     NEFPNLSPYDLAQIPDFNTLIAISQRSKKPVFLLDDKDLDEANQFGAAKQTSKEKIQD
                     FHNTFMKLGRTIINITS"
BASE COUNT         6621 a         3166 c         2359 g         7379 t
ORIGIN      
        1 aaatcttgca ttaagactct agccccgtaa acagattgaa aaccatctct aaaacttgta
       61 tccataacat ctataaattt tttagccatt tattttcctt atatgaaata attaagaaat
      121 tttaacaaaa atttgataac acattatgca aataattgct ataggtgata taaaacgaat
      181 aaaaaatagc caaattgtaa atatttgatg atttacaaat ttggaaaata ttttataaat
      241 tcgcttttta tccacaaaaa aacctacaaa tatagaactt acaatcgccc ctaggggaag
      301 taatatatta gaagtcacct tatctaaaag agtaaaaaaa tcttttccaa aaatactaaa
      361 taaactagaa aaatgagtat ttaaagataa aatacaacaa attcccaata caaaaacgat
      421 aaaacctata aatgataaag ctttaatacg agaaatttta taattattaa ccacatagaa
      481 agtcagaggc tctatcattg aaaccgcaga agtaatacct gcgaaaaaaa gtgccaagaa
      541 aaaacaaaag gctaaaacat aacctaaaat tccaagctca ttaaataaac tcatcaaaga
      601 tacaaatact attcctggac cttgtatatt tggatttgcc tcaaattcaa atataaaagt
      661 aaaaactata agccccatga taaatgagat aagaagatta atcgaaacta taaaaataga
      721 acttttgata aaatttattt ttttgcttaa agccgcagaa taagtcacta tacagcctat
      781 tcctaaacat aatgtaaaaa aagcaagccc taaagcttca gcaatagaac ttaatttaaa
      841 atttgaaaaa tcaggataaa aaagataaga aaaagcttgc ttaaaaccat tttgaaaact
      901 catacaataa agtagcataa aaataagcat gataaaaaga cttggcatta taaccacatt
      961 cagtctttca atgcctttta ttaaaccctt agacacaatc aataaagtaa gaaaaaaaga
     1021 taaagaaaaa aataaaatag aattgcttaa atcagcactg attaaagtag aaaaatcact
     1081 tcctgcttgc tctaaatttt taggtaaata ataaagacta gtcaaggcat attttaaaac
     1141 ccaacccata attaccaaat aaaaagaaag aacaaaaatt ccacctaagg tgaaaattcc
     1201 accataacgc catcttctgg catgactttt tgcaagagta tagtaagcat ttgctaaatc
     1261 acttctactt aaacgcccca ttgatacttc agctaaaaag atactaaacc ctatactaag
     1321 agtaaaaaat aaatacaaaa gaacaaaaac aaaaccgcca ttttcagcgc ttagggttgg
     1381 aaatttccaa gcatttccca aacctacagc cccgcctgca acagctaaaa tgaaacctat
     1441 ttttgaaaaa tatgttctca tttttaatcc gattttactt taaaaaagca ctaatcataa
     1501 caacaataac cgccaaaggc gaaataaatc ttaaaaagat ataccaaagt tcaaaaaata
     1561 tacccttcat ataaggacca aataaaattt gcaaagcttc ttttttgatc acaaaaccca
     1621 caaaaatagc agctaaaatt ccacccaaag gcataataat tttacttgat aaagtgtcta
     1681 aaagatcaaa aacactaaga ccaaaaattt taaatgcagt tgaatccaaa gaagacaaaa
     1741 tacacaaaat tcctaaagta taaactataa ttcctatcaa aattaaagct tttttacggc
     1801 tcattccaaa gctattaatt aagtaaaaag caaaaggctc tatcattgaa actgctgaag
     1861 taatacctgc aaaaatcaaa gatataaaaa aagctgctcc taaaatatgt cctatagctc
     1921 caagtttttg aaataaagtc gctaaagaaa cgaaaatcag acctggaccc tctttgcttg
     1981 catcaaaacc aaactcaaag ataaaggtaa aaacgactaa acccattaaa agtccgatta
     2041 aaagattgat aaaaatgata tttagagtgc tggtaataaa atttgtacgc tcaggtaaac
     2101 ttgccgaata agtgataata gtccctaccc ccaaagataa actaaaaaaa gcaagtccta
     2161 aagcctcaag cacattagaa gtactaatct tagaaaaatc aggcacgaaa agaaattcaa
     2221 ccgccatcat aaaaccatct ttagtcattg cataaataag catcaaaaca agtaagataa
     2281 ataaagctgg catcatccaa acatttagtt tttcaatgcc attttttaca cccttagata
     2341 ctgtgtaaaa aacaattaaa aaaatcaagg taaaacatac aaattggctt acaaaatcac
     2401 ttgaaattaa ttttccaaat tcagcagaac ttgtattaag atcagaatat aaatttccgc
     2461 taatacttaa atatgcatat ttaagtatcc agccaattac taaagtataa aaagaaacga
     2521 ttaaaattgc tcctatcata gtaaaacctg cataagacca agctttttta tttgaaggag
     2581 caagtttttc ataagcatta acaggatctt tttcactaat ctttcctata ctaagctcgg
     2641 ctagaaaaat aacaaaacct acacccaaag ttaaaataat ataaagcaat ataaaagcag
     2701 aaccgccgct ttgtcctacc aaagtaggaa atttccaagc atttcctaag cccacagctg
     2761 aaccggcaac tgctaaaata aaacctattt tcgaaaattt agagttcaaa atttacaacc
     2821 ttgtattaaa aaattatttt aaagtattat taaagcaaaa aaagttttaa tctttaatga
     2881 aagtaataaa aatactttaa aaatgtgaaa tttagtaaat ttcaacaaaa ttaaagataa
     2941 tttttgatat attttcaact tagttttaaa tcttaagtag ggatacgcaa gccgaactga
     3001 tttaaaatta aaacattaaa actctctata aattttaaag aaaggttcaa aaatgaaaaa
     3061 aatctttttt ctatttttag ctcttgcagc aactgctttc gcagctgaag ctaatgcacc
     3121 tgttgaacaa gaagctatca atgtatggat caaagcgttt tctgttttag cggcaggttt
     3181 aggacttggc gttgctgcac taggtggtgc tatcggtatg ggtaatactg cagcggctac
     3241 tatagcagga acagctagaa acccaggact tgggccaaaa ttaatgacaa caatgtttat
     3301 tgcattggca atgatagaag cgcaagttat ttacgctctt gtaattgctc ttatagcact
     3361 ttatgcaaat ccttttatag tttttgctta atcttaaaaa agctctattt taagtagggc
     3421 tttttatttc tttgaattct aaaatttgcg gttatggtgg aattggtaga cacgccatct
     3481 tgagggggtg gtgcgctccg cgtgtgcgag ttcaaatctc gctaaccgca ccatttatac
     3541 ttcttttagc ttttttcaat tttttttact tctttttaat catctataaa atagactttt
     3601 cgtagatatc taattgcttt agattatttt taatttattt taatttatta tacttgcaga
     3661 tattttttat tgactttgtt attgacctag ctaaaatttg ctattgactt tattgaccta
     3721 aaggaataaa agtgctaaac gataccaaaa taaaagcctt aaaagctaaa gacaaaaaat
     3781 actatattgc tgattttgac aacctactta tttgtattta tccgagcggt aagaaaactt
     3841 ttatatttaa ttataaatgt cctaaaactt taagatacaa aagaataact ctaggggaat
     3901 accctaccct caatcttgct aacgctagaa aacaaagaga taatctaaaa gtaaatttag
     3961 ctgaaaatga tagtataaga gaaaagtatg aaataacatt taaagaatta gcgttggaaa
     4021 aaatggatct taaaaaactt gaattaagcg aaaaaaccta caaaagctat atgagttatt
     4081 tacaaagatt tgcttttgga atttatggag aaattatatt agataaattg caaatcaagg
     4141 atattttaaa aagttttgaa aaatttagaa aagaaaatat aagagaaggt gccgataagt
     4201 tctttactct tttaaatgaa atttttagac atggtgttat aaaagaatat attaaaagta
     4261 accccatggc aaatctaaat agaaaagaat tgcttataaa taaagcgagt aaaaatcatg
     4321 ccaccttgtt ggaaactaaa gaaattaaag cattagtaga taatataatt gattacaagg
     4381 gatatattag tgtaaaaatt gcagcaatgt tttctttatt aactgcacaa agaagcttta
     4441 gtataagaag tgcaaaatgg gaagatattg atttggaaaa tggtatttgg tatataccgc
     4501 aagaagatat gaagatgaaa agagcgcata ctataccttt aaattctcaa tgtgtatata
     4561 tgcttaaaaa atacaaagag atgagtatta atacgggcta tttattttat agtttaagaa
     4621 gtaaaagtga aattataagc gataacacaa ttagatccat gtttagaaga atgggctact
     4681 ctaatgatga ttttacaccg catggctttc gtgctatgtt tagcacccta gcccatgaaa
     4741 atagaaataa acaccaaatg agtagcgata ttatagaatt gtgtttagcg catgtagaaa
     4801 aaaataagat taaatctgca tataatcatg ctttaaattt aaaggaaaaa gctatcctta
     4861 tgcagtggtg gggagattat ctcgatgaga ttgctgatct aaatcaacaa gtccgaaata
     4921 tttttttata aaattttcaa tatcttgttt aggatacaat cccgaacaat ttctatgttg
     4981 tttaaactct ctaaatttgc cttgtttggc gtatttgtga actataggct cttttacttt
     5041 taaaagattt gcaacttctt ttcttgtgta gtaatctccg atatctaatc taatcatttt
     5101 caactcccaa tcttttgtct ataatttcaa aaatagtatc cttgtaataa ccccaaagcc
     5161 atttctgttc ttcatcttct atattatcga cacttgtgtt gcgccattct cgtatggttt
     5221 taatctggca tcctaaacta agatgtgttt ttgaaaaatt cataacatag gtatcaattg
     5281 ctactgtaaa gatatttttc atatctccta tgcaatctct aaaatctaca ttttcaaaga
     5341 tgcagttttc aaattctgta tctagtaaat tgcaaccata taatcttacc ccactaaaat
     5401 cgcaatctat aaaagatgca ttcttacttg aaatattgct taaattagta tttttaaaac
     5461 tagctccatt tataaacaca ttatcaaaat ctaagccact tagatttaca ttttccaaat
     5521 ttgcattatt cagggaaata ccttctaaaa tgcaatactc aactaattct ttttcacttt
     5581 ttctatcatt ttcgataatg atagtttcat caagtctttt taaaattccc atctcatctc
     5641 cttaatattt ttctccattt ttcttcgtat tcttcataat tttgccaata atcaagactt
     5701 tgctttagct tcttaacaac agcatcccaa gttgtcattt ttgtactttc taatgctatt
     5761 ttttcggcaa ctaaactcat ttcccattct tttatgcaaa tcattccata atcacgagct
     5821 agtatttttc taagctctag taattcttcc ttgctaagtt ttcttttaaa actcaactcc
     5881 tttttatttt ctaagtcgta ttgtaaggct ttaattttgt tttcatattt ttccttttgc
     5941 tgtgctaatt gtgatttata acctaagctt tgtctaaaag ctaacttatc gtgcttctca
     6001 tattcaatat ttcttagtct tttttccatt tcattgaaag ctttgataaa ctcgattttc
     6061 catttataag ccttttcacc tgtaaaaccc ataacaagca aagaaaaacc atcgcgagta
     6121 aggttgtagc agggtcttaa ctctcctttt ttgtctttgt aggtagagag tataaaatta
     6181 ctctctgtaa aatcattttg cggttggttc ttggtggttt ctaaaacatc tttatggttt
     6241 ttattaaata ccttagctaa atccaaagaa ttgataaata ctttattttc tttgatattt
     6301 agatttactt ctacattatt gataattaca ggggcgttac tcattttttg cccccaaaat
     6361 taaaaacata gattgtcaaa agacttaaag ccaacatggt taaaattaac gcaacttcca
     6421 tttttcatcc ttttttgata aaatacaaaa ggtaatttaa aagggtggtg gctactgcca
     6481 accaccaaga accgatattg cagctgctat ctgcaaaatc agtaagacaa tttctaagat
     6541 tgttttaatc ttttccattg aattaccttt taaacttatt tcaaaacggg tttttaatcc
     6601 gttttgatgt tataattata gcttaaaaat ctgttattgt caagtataat aaggttaaaa
     6661 gttagttatt ttataataaa agatggtttt taaccagcgg aaaattccgc ccgttaaatt
     6721 aaaaagccta aaacaaggct tttttaagaa gttgttttaa attctcataa tctgctaact
     6781 gctcttttaa aatttctatc tcttttaaaa gctcaatcgc tttagttgtt tggtcgctaa
     6841 tgctatcttt tttaattgca ttttgcaaac ccccttcgct cattcctatc aactccccta
     6901 actgcttata agttagtcct tgttctttgc aaaattcctt aatttcctgt gctgtcatat
     6961 tactccttta tctcgcaaac taattctata tcgcaatttt taggattggt aaaacattca
     7021 aaggcttgtt taattctaaa aaatgggtca tttagttggt ttataccaaa attattccca
     7081 caaatagggc aaacatacaa agaatgccct ataaacatag aaaattcgct tttacattct
     7141 ttgcaagtga ttttaatttt tttaatatcc ttaatatttg tcattttact cctttctttt
     7201 aatttcttaa ttttatcaaa aagtttataa acaccttcta aagtccattt gattgtctta
     7261 tttttaaaag aattttctac taaaaaataa tgtgtgtttt ctataaactc atcattatgc
     7321 atcctaagat gttttgctat tgttgagcct gtagttaagc cataattaat agcgatttgt
     7381 tcatttgtaa aaattaaatt tgaagtgata ttttgcataa tcctaccttt tgctaattat
     7441 aaaaaagtag gattgtagtt ttatttagtg ttgtgttttg tgtttttctt tataaaatgt
     7501 ataaactaaa gctattgaaa ctataactaa agttaccgca ccaattccta aaatgatttc
     7561 cattttaact ccttttagat ttaatttcgc caagccctga aagaaacata attaaaatgc
     7621 cttcagctat agcataagtc gcttgacttt gtggaacttc gctaaattgt aaagcaaaag
     7681 caccatttac aaagatacct aaacctatat tccttcctgt gttaaaaata agttctaaca
     7741 ttttttccct ttttaaaagt ttagcacact aaataaaatt taacaatata tttttacaaa
     7801 attccttaat ttcctgtgct gtcatttttc tcctttattt aaaacataaa tttaaggctc
     7861 atttctaaag ccctatttac aatacttctt ataagctcat ctcttcctgt acttaaagct
     7921 tttctaagtt gcactcctaa gccatcttgt tttaaaagct ctaaggcttt cggttttaaa
     7981 atagcttttt taacttttcc gctttctaaa tccatactct caaaatccaa aaaatgatta
     8041 ttttttaggt aatttatcgt atgataagcg tttaattgat gtgttaaaaa ctcttcatat
     8101 tctagttttg ggataaaatc aaaaaagtta aaatcgcttg gaataggaaa ggtactataa
     8161 agttctccca aagtttttgc cgtatagctt tcaaaaagct caatattttc actcatttaa
     8221 atccccattt attgcaaagc aaatttaaat ccgtatttgt ctttaaaagt tcatcaaaat
     8281 aaagctctag tttatcaata taaagtctag caccttttaa atcatcattt tgtatatttt
     8341 taattgctag atttttacta tctttgataa gtctttgaag ctcatctttt ttatctttaa
     8401 gctcagttaa acgacctctt gcgtaagtaa ttgtttcttc ttgcatttta atcctttatc
     8461 tcatacaaaa ttcgattaaa tcatcgatat catttaaatc atttttagaa aagtataaat
     8521 aagctttagg actgattaaa actcctgaaa aatcgccatt gttttcttta tcgtatttta
     8581 aaactttgca ttcttttaga aaatgaatac aagagctaaa gtctatttta tattctttac
     8641 aatctttgtt aaagtcatct gaaaaaagta tgctttgatt tggaaaatca tttaaaagtg
     8701 tttttataat acgttttgaa ataagcttaa aagctttgaa gttttccatt aattatcctt
     8761 tattttattt tatcaaaatt ttacttaagc aaatagactt ctttctatat gtttaaacat
     8821 aatttcatta gcacttttaa aaaagtcttt tttaatctca aagccataag ctttgcggtt
     8881 taaatttgca gctgctaaaa gagtgctacc acttccagca catggatcta taacaacatc
     8941 gcctgcatct gtaaataatc gtattaaata ctctagcaat ttaataggct tttgtgtggg
     9001 atgaattttc ggtattgatt taccatcata aagccaatct atacaactca taatcatacg
     9061 cccaccattg ttaaattttg gtaatttatc tctgtaaaga attaacccat attcgcaatt
     9121 ttccacgatt ttcatatttg cttttaatac actagcactt gattttttcc taaaagttaa
     9181 atttatataa tgattaaaac catacctttt tgctaactcg attaaaggcg acatttgttg
     9241 aaatgagcaa aaaacaatca tacaaggggc tttcccaact tcttttggct ctttgattaa
     9301 catttttgag caaaaatgca taaattcagc cactctaaaa tcattatccg tatcaaaaaa
     9361 cgccttacca gccttatcac tttccccatt tgctatcttg ccatcaatat accacgcaga
     9421 attactcgca taagcattta ttcctaaatt gtaaggtata tcagctatta ctagctgtgc
     9481 ttttggtata ttatatcttt taaaattttg aaaatggtcg ttatataaat ttagtttcat
     9541 tttcactcct taaaaatttt tcaacatctt caaaagcttt aacaataagc ttttcttcat
     9601 gaaagtaatt tcttccgctt ggcttacttt tgtaaatttt gtaagccttt ttgagttctt
     9661 ttttacttat gtgattttta taatttattt tttcaattgc aatcccattg cttcttaaaa
     9721 aatgacaaaa gcaacttctc ctctcgctaa atggaacgat ttttacaatt tcaagataat
     9781 tagaacggca aactttcatc atcatctcct atttcgatat atttttcatt gttattgttt
     9841 tttacttcat ttccataagg attatagctt tgattttctt ttggaataaa tgatttatta
     9901 ttgtcgttat ttaaagattt atgccttgct ttaaaagatt ttatagataa aggctcttta
     9961 ttattttgaa actcatctat gttttgcatt ttttcattaa aaattttatc aagaaagatt
    10021 gtgttagcaa gttctctatt tttatttaaa tattcttttg ttccaaaacc taaaactaaa
    10081 agtttattaa ctaaagaatt tagataaata acttcagtct gcactccaaa aacattctca
    10141 tttccctttt cgctaaaatc aagttcatca attccaaaga atttcataat agcgtttaat
    10201 tgtctaaatc ctaaataatt ttctttttcg ccattttcat tgatctggct aaaatcgtta
    10261 tttttagcta caaaaagatt aaaaatagct agtttttgct cttttctggt taaaaattca
    10321 aaacaaataa aagtattatt gcttccatcg cttgccaatt tatcatataa aaaggctttg
    10381 cggaaaactc cgctataaag cccaccttca cttaaatact ctacgcttgg cgaataattt
    10441 gccacttcaa aacttgcctt aaatgctggt aacattataa ttctcctttt aattgtgtta
    10501 aaaattcatc tttattactt agaacttctc gtattttttc acttgtaaat aaagaatgtt
    10561 tttttataaa attgttttgc tccccagtgt ttaaaccatt atcactcata aattttctaa
    10621 gttcagcacc taaagctttt atctcttttg ctttattttc tatagctttt tcatcactac
    10681 cccaaacttt taaatcttca tttggattta aaaatcgctt ttcctttatt gtttctaatt
    10741 cactctcatc aagcattcca agtccgcaaa tacttaaggt tacacgcctt tttgcttttg
    10801 tgatagcttt cattattgcg tttgctaaat tatcgccacc taaattttta atatttaaag
    10861 cacctgtatc gcaatcagtt cttccatctg gtgttgctgc gtaggctgta accatataaa
    10921 tatcgccaac ttgtgccact tctgtttttg taatacttac ttttcttatt tgtcttagct
    10981 gatctgttgc tgatttattt gcgtataaag taagtttgcc atttaatact atgtattcaa
    11041 aaggctttgt aagcatgttt aagcctaaac tttcacaaag atttttaaca taactcgctc
    11101 gttctacatc actaagtttt gataaatcac cttttaccaa agccaactca taaggattaa
    11161 aatttatttc taatttattt tcttccttta atataacttc attactcatt tttcatctcc
    11221 ttagtatttt tttccatttt tcttcgtatt catcataatt ttgccaataa tcaagacttt
    11281 gctttagctt cttaacaaca gcatcccaag ttgtcatttt tgtactttct aatactattt
    11341 tttcagctaa aaattcaaat tcccattctt ttatgcaaat cattccataa tcacgagcta
    11401 gtatttttct aagctctagt aattcttcct tgctaagttt tcttttaaaa ctcaactcct
    11461 ttttattttc taagtcgtat tgcaatgctt tgattttgtt ttcatatttt tccttttgct
    11521 gtgctaattg tgatttgtag ccgatttttt gatgatgatt taaagaattt agtcttagat
    11581 tttcatcgct tagggtttta aatctagctt gtgtttgctc tcttaaaagc ttagctactt
    11641 ttttgcggta ttctttagcc ttaggacttt ttataaaaaa gcctagcata taaacacctt
    11701 ctaaagtcca tttgattact ctttgtcttc cgcctttggt ttgctcaaaa tcgtagaaat
    11761 agtgtatatt ttctatgagc tcatcagagt gtaaattttt gtgagacatt attgtagtgt
    11821 tatctactgc gtagttatat gcaacttctg tatttaaaaa acttctagtg atttgacaaa
    11881 tttcacattg taataaattc atcttaaacc tttcattttt gaaaatattt aagaaaatta
    11941 tatattattt atgaaagttt gtcaatatat ttcattcatt tttgataaat tattctaaaa
    12001 tatttgccaa aaatgaaaat aaagggtgtg gaaaatttcc atatccttat aattctgata
    12061 ttattttatg agcttttttg attgtttcta gctttcgctt taattctata ttttcaagca
    12121 ttgtttttaa aaaaagttct gtaagtcgtg gcaaatctcc gcttttccaa cgtgctatag
    12181 tactttctgg gatttctaac atttcgctta gctgtcgttg agtaatgttt aactctttgc
    12241 aaaccttttt aacaatgttt tctttctctt ctgccatgct actcctttat tttattctaa
    12301 agatatttta tcttttatgt taaaaattct atataaaata attttatttt tatcgttttt
    12361 ataatactct aaatctacta aaaaattaaa tccataagga tttttcaaaa cttcttcggc
    12421 tattttctca tcactaaaac taacatcaac cgcataagga cttaaagcat cgcactttgc
    12481 cttatgtttt gttttattgt ctattttatt tgtagtttta tacatcgtta tcaaagcatt
    12541 ttcatgtatc ttttgatatt caatttcctt tttttcgcaa atgtaattag cattttcata
    12601 aataagctca gcttcatcac tatttattct caaaagttct tcacctttat gattgataaa
    12661 aaaagtattt tgatttatag taacgggtgc aaatatattt tttaaattat tggcattata
    12721 cttagtaaaa tgcggatttt cttctatttc ttctatactt tttgatttga tatttttaaa
    12781 agatatgata agttctataa attcatttaa tgcttgaata ggtgcaataa taggcaaaac
    12841 ttctcctgct atttcaaaaa ccaaagaata tatatcactg ccagtttcaa ctttttctaa
    12901 aaaaatttta ctttgtgtta taccgtgttc ttttgatata aaactatcca ttaatttttg
    12961 aaaacttaac aaagaattag ccattatccc aagttctatg ttttcttcat ggataatttt
    13021 tattttaaaa ttaacaatat tttctttctc ttctgtcata ttactccttt cttttaattt
    13081 cttaatttta tcaaaaagtt tataaacacc ttctaaagtc catttgatta ctctttgcct
    13141 tccgcctttg gtttgctcat aatcgtagaa atagtgtata ttttctatga gttcatcggc
    13201 gtttcttaaa aaatgttttg cgattgaatt tttggtaact tcataaaatg aagcaacttg
    13261 tattgaggta ttattttgta tttgtgatag catattaacc ctttcatttt atgctttgaa
    13321 agggttgttt tgattttagt gcttactttc tttcgttttg tcttttagag acttattttg
    13381 cttataaaat agatagcaag tataagcaaa gagtataacg cttacccctg cgataatgtt
    13441 taaacctatc tcattcatcc ttttgcctcc tttgcataag aatacatata gccataatcc
    13501 cgacgctaaa agcagttatg ataaagcttt gcggtttaaa gtcaaaattc attaatgcga
    13561 aactcccatt aacaaataag ccaagcccta tgtttttaat taattctaac atagccaaat
    13621 tctaacacaa aaatcttaaa caaccctaat tcaaagaaca taaattacta attttagtaa
    13681 ttatgcaata ttaagaaata aaatttttaa gaagtgtttt taattgtttt tgctcgttta
    13741 gttcggcttc tagcttatga attttgataa gcatttgaca agctttttct acttgttcgc
    13801 caacttcgcc aatcgcaagt tgttttactc gaccttcgct tatgcctatc aactccccaa
    13861 gttgcctata agtaagccct aattccttgc aggttttttt aacaatattt tctttctcca
    13921 ttttattcct tttcatctgt gataaactca aattttaaaa cactgctttt atcttcaaaa
    13981 gattttaggc tctgacgtaa agttttaaaa ggtgcttcat cataagaatt aaaaaagttt
    14041 gtatgacaag caggacaaaa aagaatgctt tgctcaactt ttgcaatgat ttgcgtatcg
    14101 cagtttctgc aggtaatttt atagcttttc atatttattc cttttcatct gtaataaatc
    14161 taaactctgc ttttttatgc tcttttaagc tttgcaatat atttcctagt ttagaaagtg
    14221 gagcttcatc ataagaatta taaaaagtat tattgcaaag tgggcataca atgacagttt
    14281 tacctatatc taaagtgatt ttagttttac attgtttgca ggtgatttct aaacttttta
    14341 aatttaacat tttaaccctt cctttgtttt tataatttta tcaaaaggtg ctttattttt
    14401 atgctccttt tttgattttt aagcacattg aagtactttc cttataaaat tctttaggca
    14461 cagtaatatt tttttgctct aaaaagccct tataatcaat tgtagttcta ctttgcggat
    14521 aaattgtaat atccaaacat cttgcttttt ctccatttgc taaggctatg agttcttttt
    14581 taagactttc tagcttttct ttaataggtt taatcgtgtt ttcaagcctt ataatttcaa
    14641 tcgttagatt ttttgcttta gtatcttcaa gctctttata ttcacttttt tgatctatga
    14701 tataatctaa tataaactct tttatatttt taaccaacca ttcttgataa gcttcatctc
    14761 ttaaaacttc gcactctaca atctcttctt ctttattcat ggctacaaaa atgcattttt
    14821 ctttaccact gatataaagc ccaaattgca cttgagcgta gtatttatca cttggctttt
    14881 tatttctttt gataaaatca tactcatctt gcgagtattt aaactcataa ataattccat
    14941 tttcatctat tccatctaaa cttgctataa acatttcatt ttctagactt tgcaaaacta
    15001 caggagtgat actcacagaa tgtaaaaatt caaccctagc tctaatcaaa ggctcatatt
    15061 cattgcctct tctcatggct tcattttgat agacttcttt aagtcctaaa atgatatctc
    15121 ttgcttcttc tttggaatta aaagcacctt taatacctac acaagatgct accatcgatg
    15181 cacctatttt tccttttcta aaatttaacc attccacact accctgctct aaatcaatta
    15241 ttttacaatt cattttatcc tgcctttttt atttttggag tgctttttaa aatataaaaa
    15301 gtatttctcg tttctttgtt tctaactgtt tctattgcat aacctttatt tctaagatta
    15361 taaatataag ctccaagtct tgtagtaatt cttgtatcta tgcaataaaa attatctatt
    15421 tttcctttgt ttaataaaat atttaagact tgtttttctt gtgatattgt agttactgac
    15481 attctttctc ctttaatctt tttacttctt taatagcttt atcatcattt ttaaaaaccc
    15541 ctataagtcc taaagcatca agtattttta tacgaaaatt actaagtttt acattgattt
    15601 taatttcttc ttctagcttc aatgacattt catttatagc agtatctttt aatgctatta
    15661 caccttttag cctttgaact tctttttcta agtttctgat tttttcattc tttttaaata
    15721 tcaagaacat agttttgacc tttcttttgc ataaagaagc tcataaattt tattttgcaa
    15781 agagctaatt tcttttatat ttttcatatt tgcttctatt tggtctttta actcttttaa
    15841 aagttctatt ttttcatttt caagattaga aatttcagtt tttaaagatt tattttcatc
    15901 ttttaaagac ttatttagct tcatttcttt tctatattca tctttgctaa gtttaatgat
    15961 gacttgttct tttgtgtgat aagctttcaa tttttctcct tttagattaa tgcttaaaag
    16021 gagcaactga gttctttatt aaaaaggaaa ataaaaacta aaaaagaaaa aagacaaatt
    16081 ctcatgaatg taaaataagt agttttaaag ttgccccatt taagcattaa aggagcttaa
    16141 gaaaagccaa gagccttgct ctcttggcgt gagtattgtt taagtatagg ctaagcaagg
    16201 ctattctata attttagtgg ttttttagtt tagttgattg attatttcaa tcaactttta
    16261 ctatttctaa caataaaaaa gcaattttta aaaacttctc tatcatcaaa aacagctcct
    16321 tccccaccaa gagaaattag ccacttaaac aatgttattt atcaaattta tttttatttt
    16381 tgataaagcc gagtaaatcc gcaagtctcg gcattgtata atcgtttaag tttatgctaa
    16441 gcggatttag ttaaaattta tctgtgtttt ataaaagtgt ggctatttaa ttgtaaagtc
    16501 ttaatagctc taaaactaat tgtaaaatta gaattaaaat agttattaat ttttcaatca
    16561 ttttagcctc ctttctcaac accgagacaa gttagcaact taaactttat aattatactt
    16621 tctttttctt aaacccttag ttttctgtcg tttttaaagt gcaagaaaac ctttgaaaaa
    16681 tagcactata aacaataata acgagccaag tttatggata actcgctaac ccttccgcta
    16741 ttcaaaacca tcaacacgat agcaaagctt aatttccaag cggtcaaaag cttaagaaag
    16801 ttctttaata aaaagaactt gttaaacttt taataaagct tttcgtattt cttctcaaat
    16861 ttccttactt tttccaataa atcataggta tcgttaataa actcatctcc ataggcttgc
    16921 aaagaagctg caatatcttc atcatcctcc aagcttactt ttaaaatatt tttaaattct
    16981 tgcaaagagt taaaaatatc cgcaaagttt tctctgctct ctaattcatc tttaactaat
    17041 tctcttgcgt agttagaaat tcttttttct tctctatcga aatacaaatc tgtaaaactc
    17101 attttttatc ctttttttag ttataattac tttcactcta ggaaggtgat gtaatggacg
    17161 aaatacaaag cttaaaagct caacttaata atcttctttt aagagttagc gagctagaaa
    17221 gtaaagtcgc aacccttgaa aaaagactaa atgacaaaga ttttcaagtt ttaaacgaaa
    17281 ctcctaatct tttagagaaa taacaaatcc tttgttttca aatgcttctt tggtgattaa
    17341 gtttttaact gcattatgaa gaacattagc taaaaactct tccaaagaag cgtaactttt
    17401 tgaataattt ctttcaaagg ctatttctag cattttttta atatcaggtc ttaaatctaa
    17461 tttaacctct agcatttttt atcctttttg ttttgttgat aaaagtatat aataaagaaa
    17521 cttaattaaa atttaattta gtatattaat tagaaacttt tttaaaaata ttttgtggta
    17581 taatttttta atagaaaata attaaaagga ttgaatttgt ttattagagc attaagagtt
    17641 cttttcatct tatcttttat tgcggatttg actatcatag gactgtttgt tggtattcct
    17701 ttgtttttga ttttatgggg aattcaatat attatttacg gtgaaaaaaa tccttaaaaa
    17761 catttttaga aaattggaag gattaatgcg atggatataa aaggttgatg gggtattgag
    17821 gagatatata aaaaataacc aagaaaaaaa atcttggtta tgaagttata ttgattatcg
    17881 ttcttccaag tttcataaat gtgttatgaa aatcttgtat tttttcttta cttgtttgtt
    17941 tagctgcgcc aaactgatta gcctcatcca aatctttatc atctagtaaa aatactggtt
    18001 ttttacttct ttgacttatt gctattaaag tgttaaaatc tggaatctgc gctaaatcat
    18061 atggggacaa atttggaaat tcatttttta ttccattttc aaatttttcc ttttcgatta
    18121 cacaattaat atttgacaat tctgttacaa gtgtagtatt aatagcgtct cttatagcac
    18181 taatccattt ttcaaacgcc tttgtaggag cctcatttct aagtctatat ctttgttgga
    18241 ttgctcctat aaataaagga ttattgggta taccttttac acctgtagct tgtttaaaat
    18301 cttttatttc tttatgccat aatttaagag ttttgcttaa tgaatatatt gcttgaagac
    18361 aaaaataatc tggactcgta ggaactataa aatacctact acccataaga gcaatttgat
    18421 ttaggccgct aatactaggg cttaaatcta gcaatacata atctatttca ttatttattg
    18481 ctattttgtt taaaacttca aaaaagcatg ttataatatt acctaatatc ggaatacctg
    18541 cggttatttt caatgctgtt gttatttggc tatctaattg agaaagattt aaactaccag
    18601 ccaataaaaa taaattatca tttactggaa aaatttcacc atcattagct gaaccataac
    18661 tattagctcc agatataatt ttttcaataa taggctcgaa tgttataaat tgtctattct
    18721 gataaaaact agccataaag tcatcatcta atgctttact tgataaaaca agtcctgtta
    18781 aattacattg cggatctaaa tccaccatca aaaccttctt gcctaatttt gataaagccc
    18841 agcctatatt ataagttgtt gttgttttgc taactccacc tttgtggtta aaaaaacata
    18901 ttgattttgc catcaattca gtcctccaat atttttataa taaattatat attattttaa
    18961 ataatacaaa ctataaattc tgtataattg tataagcttt caatcttcgc ttataatatg
    19021 tatagtcagc aaaagctaga gtggataaca atggtaaaag tatgagtttt ttcactggca
    19081 atttcctctt tattttaatt acaatcttta gtcataaatt tatatagcgt gtttttatcc
    19141 aaatgaaatg caaatttttc attaaatggt gatattgaaa ccctgttatc tcctaataaa
    19201 tgtatataag cattaggtga aacttttgaa catattgtat tattttgata gtatgaagct
    19261 atatgaataa tattaggtga aaaattaaat acataaaaac aaccgatcat gaaaaaactc
    19321 aaacactgca aaatagctgt aactccaaaa agtacaaaac agtcaatatg aaatttattt
    19381 ttaaaatgag ttgttttcat tatgaaatta aaaatttttt ggattagaaa attaaggttt
    19441 aaaaaaaata aacacttagt tatatctaat aatactggtg ttaaaaaatg taccataaat
    19501 aatagcgaca aagcaaccat tatac
//
LOCUS       DARAII010000019        18753 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.019, whole genome shotgun sequence.
ACCESSION   DARAII010000019 DARAII010000000
VERSION     DARAII010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18753
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.019"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..980)
                     /locus_tag="SB143_000605"
     CDS             complement(<1..980)
                     /locus_tag="SB143_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEF9749163.1"
                     /translation="MEKEVIAYLDDEKIVDSQSKNSTDLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVNSKIGEEDLAKIEKKMKELAEAKQE
                     IEKYEITKNEAIAKFKDDDLKQEVLLRIPDGKVSIYKQGEFEDLCRGPHVPNTKFLRN
                     FSLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEHLRIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVV"
     gene            complement(1112..1915)
                     /locus_tag="SB143_000606"
     CDS             complement(1112..1915)
                     /locus_tag="SB143_000606"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEF9749164.1"
                     /translation="MDNLHALILGIIEGLTEFLPISSTGHMILGTTILGIDINEFWKS
                     FLIIIQLGSILAVLFVFWRKLFKGLDIWFKLAVGFFPTGLIGFVLYKYLKELFNGYVV
                     VVMLILGGIVFIVIELAHKNKEYKTNSLEKVSFLQAFCIGIIQSLAMIPGTSRSGASI
                     IGGLLLGLNRKTAAEFSFLLAIPTMIVATAYSIYKEPELLSNANALIPLSIGFVTAFV
                     VAVFVIKFFLKFISKFDFIPFGIYRIVLGILFFYLYYSGILNSGSEFKL"
     gene            complement(2202..4193)
                     /locus_tag="SB143_000607"
     CDS             complement(2202..4193)
                     /locus_tag="SB143_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEF9749165.1"
                     /translation="MQKTYSLPELTLRGLLLGSILTIIFTASNVYLGLKVGLTFSSSI
                     PAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQT
                     FMICLCGGGLGVLFTIPLRRAMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIKE
                     IALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAGA
                     IALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTLI
                     ELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVED
                     ANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSIV
                     FLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQV
                     ALLIGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIFN
                     HNIEWSYIAFGVVVGIFIIIIDKILRKNGNLSLPPLAVGIGIYLPPSVNIPLVIGGIL
                     KYFVMRYLANKYQNNSHKNEKIATHEQKGTLFASGLIVGESIFGVIIAAITVFSVSMG
                     GSESPLKLSFLNIHNNELLGLIFFIGVILYFIKRIVKIH"
     gene            complement(4297..6519)
                     /gene="pbpC"
                     /locus_tag="SB143_000608"
     CDS             complement(4297..6519)
                     /gene="pbpC"
                     /locus_tag="SB143_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1C"
                     /protein_id="HEF9749166.1"
                     /translation="MKNALKIFSFLLLFFLAYVFYVYFSFDKNTLLDDFKSRYSKILY
                     DKNGEILSVFLNDEEQWHIKSTDIPKRLKVSVINYEDRKFYSHFGVDFLALMRAFVNN
                     FNSTQRSGASTISMQTIKLWDKKDRTYFNKFNEIIQSLALENAFSKDEILKLYLSNAP
                     YGGNLIGYEAAILFYFDKNPKDLTWAQAALLAILPNQPGLINLEKNKTKLLDKRNKLL
                     AKLYERKLINKDIYELSLKEPLPNFKPRKNIAPHLALRLLSDDNKEIFSSIDKKIQLK
                     IEKKAKEFSYTLQQKGIQNLAIILADTKTRKVLAYVGSQDFYDMANLGQINGNIAKRS
                     VGSTLKPFLYALSIDEGIIAPDSILLDVPTFFSNFNPQNANKKYYGIISAKEALQRSL
                     NVPFVSLLQDYGYEKFFYKLKAFLNFEDENYKRYGLSLILGTKELSLEDLIKLYLGLA
                     NYGELANLSFIRDENLSGVARMFSKGSAYLTLEAMKELQRVGLENYNKEKIISWKTGT
                     SYGRKDAWAMGATPKYTLGVWVGNFSGEANANLYGVSIAGDLLFEILGLLDEVDLEFA
                     PPDDLMTIKLDSISKYRYDEDLNTSYINVLYPKGANILRTSPFLKKVYEYQGRELDSK
                     DIHFKDAKALIKLDFPAYALHFFQQRNFKFSNKKGVKIIYPKDNLKLILAKDLNGMKG
                     LVAKVANLNNEKLFWYLNQKLIYEGDENTQNLNLKEGKYQLFIISQSGEQDTVWFEIK
                     "
     gene            complement(6527..11779)
                     /locus_tag="SB143_000609"
     CDS             complement(6527..11779)
                     /locus_tag="SB143_000609"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012433.1,HMM:NF013957.1,HMM:NF019298.1,
                     HMM:NF019323.1,HMM:NF023400.1,HMM:NF036531.1,
                     HMM:NF037155.1,HMM:NF037694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749167.1"
                     /translation="MLKNILISLILSFLLIACGGEKNKDSSELIRAQSQGLLKNHEAI
                     FVEFKEAIVDFDEMSIDAKINSKNSKILLTKASDSRFLLDLTYLEANQNYKIEFIYKN
                     IPIVLEFQTGWIENFTYKAQLEQDEEKAYLHLNYSFGSTYNWQFEDKTQEGLKITLDG
                     KDLAFSLGEFSLDTDDIKLLDRPQELVLTYDEKIMGFKEAKVLQFQIPSKSKNNDFRL
                     ISAEEKDQIATLKFSKELAENQAFQDFIQISPELNFRAWSIGKELKISANFEPGEKYK
                     VKIAKGLKSNQGLINQGEEANIILQKDLDPSLVFANDGVFLPSGAEYQVYIKSRNVKK
                     IHLKVSQIFANNISEYLRYKNLVGKKDDSTQEAFYSSDGFNYVAKNVIDKKIELKNQK
                     NTWINTALDLSDLKGKTGIFSVSLSVDANDLDYKGENVYRIINKASVSKNLIFSNIAL
                     SAQNLNKQLVVHARDFSKNEALENVKIELVSKQNQILQSQNTNSNGDVKFQIQEDDEI
                     LYILASKENQISVLRFSNPLSTDGYDVEGDQNHEMIKAFIYTDRGVYRAGDSVHLSVV
                     ARENTNPLKHPISFTLINPKNQKIIENQILKSQNDIYYTQIHLDKNAINGLYRAIFNI
                     AGVEFSKDILVQSVVPNRIKVELNADENRSLDDGNLNYELSSKYLFGALASNLKYQSF
                     VYFSPKNYHNPKYKDYIFINPSSLIIRASADDKGNLDEKGRVQSSVEIPENILNSQGY
                     NFNARIVSEVFEKGGRSVKAVRDVNLNRYDYFVGMKALTNSYVSEGETIDFYAIVSDL
                     KENLVSGKTLEYRIYQNDYYWWWDYDSYDEFLRSIKQDHNTKLIEKGELTSSSEPMKF
                     SFNTSNYYGQMFIELIDKESGISAGQSFYVSSWGEPSYADVVSSLKIKSDKNKYKIGQ
                     SAKIEFESVAGAKALITLSSNSKIIDRFVMDTQGESTSIELAMKKEYAPNIYVSVSLF
                     QDYNKIDNDRALRLFGVIPLYVEDENTKLNLELKTPDKILPNSDFEIEIQSKDKRAFN
                     YTVAIVDEGLLDLTDFKTPDIWEGFYAKTGFTLKTYDTYSQIIPKFTGGDSVSKIGNL
                     RADKNRDDSAQRFKPVVLFNAPARSDKAGFAKLKFKMPSYMGLVRVMVVANENDAYGS
                     ISKDMQVSAPLVLLETLPRTLKIGDNFTLLTQIFKTENRIKNATLSVRSKNSLIKISP
                     DTQAIDFKNATNLEVMMDANVSDNRIGKELLEFELKSENYTYKNEIEIDIKPINAYTY
                     ENNTSLIKAGESKEFIIKDYILGTTNATLKLSPTPILDMDKRIKYLLNYPYGCIEQTT
                     SAVLPQLFLDKFSTEFDKQKAINNINAAIERYANFQTADGGFAYWQGGDESNAWGSNY
                     AGMFLILAKQNGYFVPDSMYERWLKYEQNFVQKSIYHDYMMDIKANSLYLLAMAKKPN
                     ISEMNLLYDSLNTLSTEAKWQLAAAYKLAGVEDTAKQIASKISIEPDSKYSSYTYGSL
                     IRDEAIIANAYKQIYGTNNEELLQKISDTLLSKDYLSTQSTGYALYALAMGANLENMN
                     ENFMDATLKIGDQVHTIDQNQMQIFSFNNEKAIINANKDIFVSFGVEGVKAGENSAFS
                     NKISLDRAFYDEKGNKISPSEIGSGQTFYMRISASLNEGANYVSNIALTQILPSGWEV
                     SNTLLDDNTPSFIKNSSYDFIDVRDDKIMWFFSLNKNRTHHFYIKLNAITPGSYTLSG
                     AYVEAMYDDTYRALSESEKVVVKR"
     gene            11963..12316
                     /locus_tag="SB143_000610"
     CDS             11963..12316
                     /locus_tag="SB143_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749168.1"
                     /translation="MKKGILIASALLTGSMLLADSVKLQGTIAEVYDNNKTLLIDSIY
                     GGQMAVRILPNTEIDMDDCGIFGMDKHGKFKDLKVGDFLEVKLYYPGYSSNPTQAPAI
                     PVAREIDIECYKKAY"
     gene            12419..13567
                     /locus_tag="SB143_000611"
     CDS             12419..13567
                     /locus_tag="SB143_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749169.1"
                     /translation="MKKLLIIPIIIFLCFIAQIFYMGHINESFFYNLTQTQNPYYEIK
                     NINFHKGFLNSKADFTIEDKYNLGLISKLDFKFNNNYFSKFIAQGKLSNPFKLLDDKL
                     QNKELAWFKIQSIQNDLNVSIQFQDINLSNEGGNALWENVLTEILLDKEDLKIKAIYS
                     KIGQVDFSQFYAKFYLKNLDHQQKFEKPISFSNLIQFNESVEEFKFDFCEINNHTISS
                     FYNKNIIYFDDDNQTLKMHSQGKANNLNIDLTSQIYQSIDFDQINFDLIYSQKKPDIS
                     DDKLIFKPSNEELNLQIQNITLKKDNQDINIKGNIFLSRQSHKAHIQISSLKSPDEIF
                     TWGQFFGGLNQYFIKNEEGMFIMDLHYDSDTKTQLKINGNEFTDINLN"
     gene            13567..14748
                     /locus_tag="SB143_000612"
     CDS             13567..14748
                     /locus_tag="SB143_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEF9749170.1"
                     /translation="MSLALNFRPKTLDEILGQQELVEVFKKFISMQKLPHSLFFGPAG
                     CGKTTFARVVAKDFGLDFYEFDGGNFKLEDLRKIIENYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRCIVIGASTENPYFVLSSGIRSRSMLFEFKNLGQKDLELLLERVQQ
                     KIAFKIEDNAKEFLLKSFDARAMLNLLEFALVLNEKEITLENLKKLRNGVNSEGVSSK
                     DTHYILASALIKSLRGSDVDAAIYYLARLIDAGESADFIARRLIIFASEDISNADPNA
                     LNLAVSTLTAVKNIGYPEARIILSQCAVYLASAPKSNSSYNAINKALDYVKNNPALEI
                     PNYLNNNHPEKKNYLYPHNFGGWVKQNYLSANLKFYESKGIGEEARLLENLSKLKNIK
                     S"
     gene            14818..15546
                     /locus_tag="SB143_000613"
     CDS             14818..15546
                     /locus_tag="SB143_000613"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEF9749171.1"
                     /translation="MINIGIYGAKGRMGKQIEECLKSETKAKAAALFDKGDNLEEFFE
                     KSDVIIDFSSPNGTHELLNYARTMPKPLVIGTTGLDEKTLHLMQNASEVMPVFYATNM
                     SLGVAVLNHLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQGVAKARNLDLEK
                     VRISGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEEGEFLELNHTATSRATFAKG
                     AIKIAIWLNAQKPKMYSINDFLGI"
     gene            15548..16885
                     /locus_tag="SB143_000614"
     CDS             15548..16885
                     /locus_tag="SB143_000614"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEF9749172.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKTIKT
                     IKAKGEVNQIFNPENLKTLEGEIAIGHNRYSTAGNSSLNDAQPVAATSVLGDIALAHN
                     GNLVNKEKVRSKLIEDGAIFQTNMDTENVVHLIARSKKESLKDRFIESLQECIGAYCF
                     VLASKDKLYVARDPYGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMIIF
                     TQGNDKFESIELFKQEPRICAFEYIYFARPDSIIEGKSVYEIRKKMGEALAKKFTHSA
                     DFVVPVPDSGVSAAIGFSQYLKIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     HKVLKDKEIVVVDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNLEEVREYVEADSLSFLSIEELTQSIGDERRYSLISFDGDYFIK"
     gene            complement(16889..17701)
                     /locus_tag="SB143_000615"
     CDS             complement(16889..17701)
                     /locus_tag="SB143_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEF9749173.1"
                     /translation="MILTFILLALALALLSFKKIKLSFVVLVISGFLAYYHNIIEISF
                     IVFVGVFFLLSLYYKNNKNVFLELLIVVFCLLLFLHFIPGVNNVKILDKVHASEHSSA
                     FTLYFSFDKPLGVFLLFLLMPSLFENLNRIKPKLFQAALLFASPFLLLSIPWYLGVIK
                     MEIGFPSWIVYFLFSNLFLVALVEEAFFRGYLQQRLQGLIGGVGALLVASLAFGVAHY
                     KAGILMIIFASLAGLIYGMAWRYSKSLWLSVFFHYGLNLTHLFFFTYPSYVK"
     gene            18062..>18753
                     /locus_tag="SB143_000616"
     CDS             18062..>18753
                     /locus_tag="SB143_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEF9749174.1"
                     /translation="MLITFGIFYYNNLQGSEKIAQITKNLINKEINIKVELLTKSMAI
                     ALGDLIKNVHSEEEKVKIIATAIENFRFEEDKSGYFFVYQKTTVKAHPVRKDLIGTDL
                     YNAKDENGVFYVRELYQRALEKGGFVTFYFTKPQPDGKNIIAEKTAYSYLIPDTNDLW
                     ISTGVYKDTLEPYIDGNLEELLSFFSKNFFKTIIFFTLFILIIIPFIFIFYRNLITGV
                     QGIKTNITSFFD"
BASE COUNT         6772 a         3147 c         2501 g         6333 t
ORIGIN      
        1 accacgccgt attcaaaaaa tttcaaaggc aaatcacgat aacttcttac atcactttga
       61 taaattttaa tatgtcccac acagttcata ggcttaatgc catattcttg ttcatcaatt
      121 tgtgtaaaat acatattttc tttatagttt gcataatgcc cgctgatttt ccatgcatct
      181 gcttttaaaa gttcaggccc acgcacaggc tcataaccac gcaagcgatg aattttataa
      241 agcatatgtt caagtttaga tctaagtctt gcaccattgc ttaaccaaat aggaagtcca
      301 cctcctatct catcatcaaa agtaaagagt ttaagttcgg ttcctaattt tctatgatcg
      361 cgttttttag cttcttctat gattcttaaa tgctctttta aactctcttt atctgcaaaa
      421 gcagtaccat aaatacgcgt aagcatttct cttttttcat cgccaccaag ataagctccc
      481 gcgacgcgtg taagtgagaa gttgcgtaaa aatttggtat taggcacatg aggaccacga
      541 caaagatcct caaattctcc ttgtttataa atacttactt ttccatcagg aatacggagt
      601 aaaacttctt gttttaaatc atcgtcttta aatttagcaa tagcttcgtt ttttgtgatt
      661 tcatattttt cgatttcttg tttggcttcg gctaattctt tcatcttttt ttcaattttt
      721 gctaaatctt cttcgccgat tttagaattc acacgaaaat cataataaaa tccatcttct
      781 ataacaggac caacgaaaaa tttagcctca ggatacaaac tcttaatcgc ctgtgccatt
      841 aagtgcgcac aagaatgacg gattacttct aaactttctt tagaattatc aaaataaatt
      901 tcttttaaat cagtagaatt cttactttga gaatcaacta ttttttcatc atctaagtat
      961 gcaataactt ctttttccat aacttttaac cttattttgc tcactgactc tgtgagtgtt
     1021 tataaagttc taattttagc tttctaagac ttaatttttt ttgaaattca gcttattttt
     1081 aaaaaaatct tagaataaat ttaatatttg tttataactt aaactcactc ccagaattta
     1141 aaattccact ataatacaaa taaaaaaata aaattcccaa cactatccta taaattccaa
     1201 aaggaataaa atcaaatttt gaaatgaatt ttaaaaagaa tttaatcaca aaaaccgcta
     1261 ccacaaaagc tgtaacaaag cctatactta aagggattaa agcattagcg ttgctaagaa
     1321 gttcaggttc tttgtaaata ctataagcag ttgcaactat catcgtaggg atagcaagca
     1381 aaaagctaaa ttcagctgct gttttgcggt taagtcctaa taaaagtccg cctataatac
     1441 ttgctccact tcttgaagta cctggaatca ttgctagaga ttggataata cctatgcaaa
     1501 aagcttgtaa aaaactcact ttttctaaag aattggtttt gtattcttta tttttatgag
     1561 ctaattcaat aacaataaaa acaataccac ctaaaataag catcacaact actacatagc
     1621 cattaaaaag ctcttttaaa tacttataaa gcacaaatcc tataagccct gtaggaaaaa
     1681 aaccaactgc aagtttaaac caaatatcaa gtcctttaaa aagcttacgc caaaacacaa
     1741 aaagcactgc taaaatcgat cctagttgta taatgattaa aaaacttttc caaaattcat
     1801 taatatcaat acctaaaata gtcgtcccta aaatcatatg tcctgtagaa gaaatgggta
     1861 aaaattcagt caaaccctca atgattccta gtattaaagc atgtaaatta tccatatttt
     1921 tccttaaaat aaaaaaagaa ttctacaaac tttttttaaa cacgacaaaa atataaaaac
     1981 aatttcttaa agcagacgat aaaaataaac tatttgtatg aaaaagctga ttaattttga
     2041 gttttatttc tcattttact ggcttgggta agaatacaat tttttactat tggagcattt
     2101 tatactttgg atcaagatat taaaaataaa gttacaagat aaataaacta agaagaattt
     2161 tataaaaaat ttaaaattct tctttatgaa tgttttaaat tctaatgaat tttaacaata
     2221 cgcttgataa aataaagtat gactcctatg aaaaatatca aacctaataa ttcattattg
     2281 tgtatattta aaaagcttaa tttcaaagga ctttcacttc cgcccatgct aacagaaaaa
     2341 acagtaattg cagctataat aacgccaaaa atactttccc ctacgatgag tcctgaggca
     2401 aataaagtcc ctttttgttc atgggttgct attttttcat ttttgtgaga attattttga
     2461 tatttgtttg ctaaatatct catcacaaaa tattttaaaa ttccaccaat taccaaaggg
     2521 atatttacag atggtggcaa ataaatacca atacccacag ccaaaggtgg taaggataaa
     2581 ttgccatttt ttcttagtat cttatctata ataatgataa atatacctac aactactcca
     2641 aatgctatat aactccactc tatattgtga ttaaaaattc cttgtgctat agtgctcatt
     2701 aaatttgctt gcggtgctgc taaagctgat gaagcatcca taccttctct tggcattgct
     2761 ccgacaaaac cataagcttg ataaagcaaa tttaaaacag gaactatagc caaagcacca
     2821 aaaacacaac ctattagcaa agcaacttgt tgtttccaag gagtagctcc gactaaatgt
     2881 cctgtcttta aatcttgtaa attatcattc gaaatagcag ctgtagctaa aataacacta
     2941 gtagtaaaaa tagctaatgc tactgcaaat ttagaaagca taggatcttg aaaaagttcc
     3001 acacctaaaa ccaaaaaaac aatagaagaa ataataacac caataagtcc gattccagaa
     3061 ataggactag aagaagatcc tacaagtcct gccatatatc cgcaagctgc tgcaacaaaa
     3121 aaacctatta aaacagaaac taaagttcca acaaatgaaa atagcatttg ataataaata
     3181 cttaagttag catcttcaac aaaactataa aaagtaataa ataaacccac aaccattaaa
     3241 acaaaaagta taaaaatact ttttaaagaa aggtctatat ttgttctttc atttttttct
     3301 tgattagtaa ttttaacatt tttaacaatt tctttaatac cttcaataac gggttttaaa
     3361 agttctatta aagtccaaag cgctgctata gcaatagctc ctgttcctat aagccttact
     3421 ttagaactcc atacactaga agctaaatct acggcatttt ttgcactatc gaattcaaaa
     3481 tttgaaagat agggagtaaa aatgccccaa gctaaaaaca tacctacaaa aagagctata
     3541 gcacctgcta aaccaactaa ataacctgcc cctaaaagtg ccaaagaata tcccatagaa
     3601 aaaccaaaag ccattttatt ccaaataaaa gcaaaattac tctcacttgc agcgagcttg
     3661 aaaccattgc ttaacaaact aaaaatagca gctataaaag agcctaatgc tatttcttta
     3721 atgccttgtt ttcctttttt actactctga tctttattgg ctacttttaa aatttcagct
     3781 gcagctctac cttcaggata agcaagcttg ctttcaacca ccatagccct tcttaatggt
     3841 atagtaaaaa gcactccaag tccgccacca caaagacata tcataaaagt ttgccaaagt
     3901 ggaaattcac tccaataccc acacataaaa agccctggga taacaaaaat aactgatgat
     3961 aaagttcctg ctgctgaagc ttgagtttga accatattat tttctaaaat atttgaagtc
     4021 ttaaaaagac tcaaaaccgc catggagatg accacagctg gaattgatga tgaaaaagta
     4081 agtcctactt taagtcctaa atatacattt gaagctgtaa aaataatagt taaaatactt
     4141 cccaaaagca aaccgcgcaa ggtgagttcg ggtaaagagt atgttttttg catattccct
     4201 ccaatcattt catcataaat tcctatgatg ataaatttta aaaataatac aaaaaaactc
     4261 ttatattttt ataaattttt aaaatttgca aaaaaattat ttaatttcaa accaaaccgt
     4321 atcttgctca ccgctttgag aaataataaa aagctgatat ttgccttctt ttaaatttaa
     4381 attttgcgta ttttcatctc cctcataaat aagtttttga tttaaatacc aaaaaagctt
     4441 ttcattattt aaattagcta cttttgccac aagacctttc attccattta aatctttggc
     4501 taaaataagt tttaaattat ctttaggata gataatctta acaccctttt tatttgaaaa
     4561 tttaaaattt ctttgctgaa agaaatggag tgcataagca ggaaaatcaa gctttatcaa
     4621 tgcttttgca tctttaaaat gaatatcctt agaatcaagc tccctacctt gatactcata
     4681 aacttttttc aaaaaagggg aagttcttaa aatatttgcc cctttaggat ataaaacatt
     4741 aatataactt gtatttaaat cctcatcata tctatattta ctgatactat ctaacttgat
     4801 tgtcatcaaa tcatcaggcg gcgcaaattc caaatctacc tcatctaaaa gtcctaaaat
     4861 ctcaaaaagc aaatctcctg ctatactcac gccatataaa tttgcattag cttcaccgct
     4921 aaaatttcct acccaaactc ctaaggtata ttttggagtt gcgcccatgg cccaagcatc
     4981 ttttctacca taacttgtgc ccgtcttcca agaaataatt ttttctttat tgtaattttc
     5041 taaacccact ctttgaagtt ctttcattgc ttctaaggtt aaatacgcac tacccttaga
     5101 aaacattctt gctactccgc ttaaattttc atctcttata aaagaaagat tggcaagctc
     5161 tccataattt gccaaaccca aataaagttt tataagatcc tcaagactca attctttagt
     5221 tcctaaaata agcgaaagcc catatcgctt gtaattctca tcttcaaaat ttaaaaaagc
     5281 ttttaattta taaaaaaatt tttcataacc ataatcttgc aaaagcgata caaaaggaac
     5341 atttaaagat ctttgtaaag cttcttttgc actgattatc ccataatatt ttttatttgc
     5401 attttgggga ttgaaattag aaaaaaaggt tggaacatca agcaaaattg aatccggtgc
     5461 gataatgcct tcatcaatac ttaaagcata caaaaagggt tttaaagtag aacccacact
     5521 gcgcttggca atatttccat taatttgtcc taaatttgcc atatcataaa aatcttgcga
     5581 acccacataa gctaaaactt tgcgtgtttt agtatcggct aaaataatgg ctaaattttg
     5641 tatgcctttt tgttgcaaag tataagaaaa ttctttagcc tttttttcga ttttaagttg
     5701 aattttttta tctatgcttg aaaaaatttc tttattatca tcacttaaaa gtcttaaagc
     5761 aagatggggt gcaatatttt tgcgaggctt aaaatttggc aagggctctt ttaaagaaag
     5821 ttcgtaaata tctttgttga ttaactttct ttcataaagt tttgctaaaa gtttgttgcg
     5881 tttatctaaa agtttcgttt tatttttttc taaattaata agtcctggtt gattgggtaa
     5941 aatcgcaagc aaagcagctt gagcccaagt taaatcttta ggatttttat caaaataaaa
     6001 taaaatagca gcttcataac cgattaaatt cccgccataa ggagcattgc ttaaataaag
     6061 ctttaaaatt tcatccttac tgaaggcatt ttccaaagct aagctttgta taatttcatt
     6121 gaatttatta aaataagttc tatctttttt atcccaaagc ttaatcgttt gcatactaat
     6181 agtacttgca ccacttcttt gagtagaatt aaaattattt acaaaagccc gcattaaagc
     6241 taaaaaatct actccaaaat gagaataaaa tttcctatct tcataattaa tcacagagac
     6301 tttcaaacgc ttgggaatat cagtgctctt gatatgccat tgctcttcat catttaaaaa
     6361 aacacttaaa atttcgccat ttttatcgta taaaatctta ctataacggc ttttaaaatc
     6421 atccagtaag gtatttttat caaaagaaaa atatacataa aaaacataag caagaaaaaa
     6481 aagtagcaaa aagctaaaaa tttttaaagc atttttcatg ttttatttag cgtttcacaa
     6541 ctactttttc actttcactt aaagctctat aagtatcatc atacatcgct tctacataag
     6601 caccacttaa agtataactt cctggagtta tggcattaag ttttatataa aaatgatgcg
     6661 tgcgattttt atttaaacta aaaaaccaca tgattttatc atccctaaca tcaataaaat
     6721 catagcttga atttttaata aaacttggag tgttatcatc taaaagcgta ttgctcactt
     6781 cccaaccgct tggtaaaatt tgtgttaaag cgatattaga aacataattt gcaccctcat
     6841 ttaagctcgc tgaaattctc atataaaagg tttgtccaga accaatctcg ctaggactga
     6901 ttttattacc cttttcatca taaaaagcac gatctaaact gattttattg ctaaaagctg
     6961 aattttcacc cgcttttacc ccctctactc caaaacttac aaatatgtct ttattcgcat
     7021 ttataatagc tttttcatta ttgaaagaaa aaatttgcat ttggttttga tcgatagtat
     7081 gtacttgatc acctattttt aaagtcgcat ccataaaatt ttcattcata ttttctaaat
     7141 ttgcacccat ggctaaagca tataaagcat agcctgtact ttgtgtggat aaataatcct
     7201 ttgaaagtaa ggtatcgctg attttttgaa gtaattcttc attattagtg ccataaattt
     7261 gtttataagc atttgcgata atagcctcat ctcttattaa agaaccataa gtataagaag
     7321 aatatttaga atcaggctct atagaaatct tgcttgcaat ctgttttgca gtatcttcaa
     7381 cacctgcaag tttatatgct gcagccaatt gccacttagc ttcagtgctt agcgtattta
     7441 aactatcata aagcaaattc atctcgctga tattaggttt ttttgccata gccaaaagat
     7501 ataatgaatt tgcttttata tccatcatat aatcatgata tatacttttt tgaacaaaat
     7561 tttgctcata ttttaaccat ctttcataca tggaatcagg cacaaaatac ccattttgct
     7621 tagctaaaat caaaaacatt cccgcataat tacttcccca agcattgctt tcatctcctc
     7681 cttgccaata agcaaatcct ccatcagcgg tttgaaaatt ggcataacgc tcgatggctg
     7741 cattgatatt attaatcgct ttttgcttgt caaattccgt gctaaattta tctaaaaaaa
     7801 gttgtggcaa aactgctgag gtagtttgtt ctatacagcc ataaggataa tttaacaaat
     7861 acttaattct tttatccata tctaaaatag gtgtaggcga aagctttaaa gttgcatttg
     7921 tagtccctaa aatataatct tttataataa attctttact ttctcctgct ttaatcaaac
     7981 tagtattatt ttcatatgta taagcattga taggtttgat atcgatttca atttcatttt
     8041 tataagtata attttcactt tttaattcaa attctaaaag ctctttacca atcctattat
     8101 cacttacatt tgcatccatc atcacttcta aattagtagc atttttaaag tctatagctt
     8161 gagtatctgg acttattttt ataagagaat ttttacttct tacgctcaag gttgcatttt
     8221 taatacgatt ttctgtttta aaaatttgag ttaaaagcgt gaaattatcg cctattttta
     8281 aagtccttgg cagagtttca agcaacacaa gaggtgcact tacttgcata tccttagaaa
     8341 tgctaccata agcgtcattt tcattggcca caaccatcac acgaaccaaa cccatataag
     8401 aaggcatttt aaatttaagt tttgcaaagc ctgctttatc gcttcttgca ggagcattaa
     8461 aaagcactac aggtttaaaa cgctgtgcgc tatcatcacg atttttatct gctcttaaat
     8521 tccctatctt tgaaacacta tcgcctccgg taaatttagg gataatttga ctataagtat
     8581 cataagtttt taaagtaaat cctgtttttg cgtaaaagcc ctcccaaata tcaggggttt
     8641 taaaatctgt taaatcaaga agtccttcat ctacaatagc cacagtataa ttaaaagctc
     8701 ttttatcttt gctttgaatt tctatctcaa aatcactatt aggtaaaatt ttatcaggag
     8761 tttttaattc taaattaagc tttgtatttt catcttctac atacaaagga attacaccaa
     8821 aaagccttag ggcacgatca ttatcaattt tattataatc ttgaaataaa ctcacgctta
     8881 catagatatt tggtgcatat tcttttttca tcgccaattc tatactcgtg ctttcacctt
     8941 gagtatccat cacaaaacga tcaataatct tggaattaga acttaaagtt atgagtgctt
     9001 tagctcctgc aacactttca aattctattt ttgcactttg tcctatttta tatttgtttt
     9061 tatcactttt aatttttaaa gaactcacca catcagcata gcttggctct ccccaagagc
     9121 ttacataaaa actttgccct gcgcttattc cactttcttt atctataagc tcaataaaca
     9181 tttgtccata ataattgctt gtgttaaagc taaatttcat aggctcgcta gagctagtaa
     9241 gctccccttt ttcaataagt ttggtattgt gatcttgctt aatagagcgc aaaaattcat
     9301 cataagaatc ataatcccac caccaataat aatcattttg ataaattcta tactctaaag
     9361 ttttgcctga aactaaattt tcttttaaat cacttacaat ggcataaaaa tcgatcgttt
     9421 ctccctcaga tacataagaa tttgtcaaag ctttcattcc cacaaaataa tcataacgat
     9481 ttaaatttac atccctaaca gcttttacag atctgccacc cttttcaaag acttctgaaa
     9541 caatccttgc attaaaattg taaccttgag aatttaaaat attttcagga atttcaacac
     9601 ttgattgcac cctgcccttt tcatctaaat ttcccttatc atcagcactt gctctgataa
     9661 tcaatgaact tggattaata aaaatataat ctttatattt aggattatga taattctttg
     9721 gagaaaaata tacaaaactt tgatatttta aatttgaagc taaggctcca aaaagatatt
     9781 ttgaagaaag ctcatagttt aaattcccat catctaaact tctattttca tcagcattta
     9841 attctacctt aatgcgattt ggcaccacac tttgaactaa aatatcttta ctaaattcca
     9901 ccccagcaat attaaaaatt gccctataaa gtccattaat ggcattttta tctaaatgaa
     9961 tttgcgtata gtaaatatca ttttgacttt ttaaaatttg attttctatg attttttgat
    10021 ttttaggatt aattaaagta aaacttatag ggtgtttgag cggatttgta ttttctcttg
    10081 caaccacact taaatgcaca ctatcacccg ctctataaac cccacgatct gtgtaaataa
    10141 acgcctttat catctcatga ttttgatccc cttctacatc ataaccatct gtggatagag
    10201 gattgctaaa tcttaaaaca ctgatttgat tctctttgct tgctaaaata tagagtattt
    10261 catcatcttc ttgaatttga aatttcacat ctccattaga attggtattt tggctttgca
    10321 aaatttggtt ttgcttactt acaagctcta tttttacatt ttctaaggcc tcatttttac
    10381 taaagtctct tgcgtgaact acgagctgct tatttaggtt ttgagcactt aaagcgatat
    10441 tagaaaaaat aagattttta ctgacactag ctttatttat aatacgatat acattttcac
    10501 ccttataatc aagatcgtta gcatcaacac ttaaactcac tgaaaaaatt ccagttttac
    10561 cttttaaatc acttaagtct aaagcagtat ttatccaagt atttttttga tttttaagct
    10621 ctattttttt atcaatgaca tttttagcaa cataattaaa accatctgaa gaataaaacg
    10681 cttcttgagt gctatcatct tttttaccca ccaaattttt ataacgcaaa tactcactta
    10741 tattgtttgc aaaaatttga cttactttta aatgaatctt tttaacattg cgcgatttga
    10801 tataaacttg atattctgcc ccactaggca aaaatacccc atcatttgca aaaacaagac
    10861 ttggatctag gtctttttgt aggatgatat ttgcttcttc accttgattg attaagcctt
    10921 gatttgattt taaacctttt gcgattttaa ctttatactt ttctcctggc tcaaaattag
    10981 ctgaaatttt taactctttt cctatactcc acgctctaaa attaagctcg ggtgatattt
    11041 ggataaaatc ttgaaaggct tgattttcag ctagttcttt agaaaatttt aaagtagcaa
    11101 tttgatcttt ttcttctgca ctaatgagtc taaaatcatt attttttgat ttgctaggaa
    11161 tttgaaattg aagcactttg gcttctttaa aacccatgat tttttcatca taagttaaaa
    11221 caagttcttg aggtctatct aaaagcttaa tatcatcagt atcaagacta aattcaccca
    11281 agctaaaggc taagtctttg ccatctaaag tgatttttaa accttcttgt gttttatctt
    11341 caaattgcca attataagtg cttccaaagc tataatttaa atgcaaataa gctttttctt
    11401 catcttgctc taattgagct ttataagtaa aattttctat ccaccctgtt tgaaattcta
    11461 aaacaatagg aatattttta taaataaatt ctattttata attttgatta gcctctaaat
    11521 aagttaaatc tagtaaaaat ctagagtctg atgcctttgt aagtagaatt tttgaatttt
    11581 tagaattgat ttttgcatca atactcattt catcaaaatc aacaatagct tctttaaatt
    11641 caacaaaaat tgcttcatga ttttttagaa gtccttgaga ttgtgcacga attaactcgc
    11701 ttgaatcctt atttttctca ccgccacacg cgatcaataa aaaagataaa atcaaactaa
    11761 tcaatatatt ttttaacatt aatattcctt tgaaaaatta agctcgacat tatttaagat
    11821 attctactta cttttaatta aaaattcatt gatatttttt aaaaactcaa atcaaatatc
    11881 taaaaaatta tattttatcc aatttcacac tcacttcact taaaaatttt ataatgtcat
    11941 cacttttaaa aaaggagaca aaatgaaaaa aggtatttta atcgcatcag cacttttaac
    12001 aggctctatg cttcttgcag atagtgtaaa acttcaaggt actatagcag aggtttatga
    12061 taataataaa actttactta tagattcaat ctatggcggg caaatggctg taaggatatt
    12121 gccaaatact gaaattgata tggatgattg tgggattttt ggaatggata aacacggaaa
    12181 attcaaagat ttaaaagtag gagattttct tgaagtaaaa ctttactatc ctggatattc
    12241 atctaatcct actcaagcac ctgcgattcc tgtagcaaga gaaattgata tagagtgtta
    12301 caaaaaagct tattaatttg cttacttttt agtaagcaaa tttaatttct tcaaaattta
    12361 aacttttttt agcaaggaat ttgtaaaata gtacttaaat ttgtttaagg aaaaaagatt
    12421 gaaaaaacta cttataattc ctattattat ctttctttgc ttcattgcgc aaatttttta
    12481 tatgggacat attaatgaaa gtttttttta taatcttact caaacacaaa atccctatta
    12541 tgagataaaa aatatcaatt ttcataaagg ttttttaaat tcaaaggctg attttaccat
    12601 agaagacaag tataatttag gtttaatttc aaagcttgat tttaaattta acaataatta
    12661 tttttcaaaa tttatagcac aaggaaaact tagcaatccc ttcaaactct tagatgataa
    12721 attacaaaat aaagaattag cttggtttaa gatacaatct attcaaaatg atcttaatgt
    12781 atcaattcaa tttcaagata tcaatttaag caatgaaggt ggaaatgcat tatgggaaaa
    12841 tgttttaact gaaattttac tggataaaga agatttaaaa attaaagcta tttattcaaa
    12901 aataggtcaa gttgattttt ctcaatttta tgcaaaattc tatctaaaaa acctagacca
    12961 tcaacaaaaa tttgaaaaac ctatatcgtt ttctaattta atacaattta acgaaagtgt
    13021 agaagagttt aaatttgatt tttgcgaaat caataatcat acaatctctt cattttataa
    13081 taaaaatatc atttattttg atgatgataa tcaaaccttg aaaatgcatt ctcaaggcaa
    13141 agcaaataat ctaaatatag atttaacttc tcaaatttat caaagtattg attttgatca
    13201 aatcaatttt gatctcattt atagtcaaaa aaaacctgat atttctgatg ataaattgat
    13261 ttttaaacct tccaatgaag aattaaactt acaaatacaa aatatcactt taaaaaaaga
    13321 taatcaagat ataaacatca aaggaaatat ctttttatca aggcaaagtc ataaagctca
    13381 tattcaaatt tctagtttaa aatcgcccga tgaaatcttt acttgggggc aattttttgg
    13441 aggtttaaat caatacttta taaaaaatga agagggtatg tttatcatgg atcttcatta
    13501 tgatagtgat actaaaactc agcttaaaat caatggcaat gaatttacgg atataaattt
    13561 aaactgatga gtttagcttt aaattttcgt cccaaaaccc tagatgaaat tctaggccaa
    13621 caagaacttg tagaagtatt taaaaaattt atcagtatgc aaaaacttcc ccatagttta
    13681 ttttttggac ctgcaggatg tggaaaaaca acctttgcta gagttgtagc taaggatttt
    13741 gggcttgatt tttatgaatt tgatggtgga aatttcaaac ttgaggattt aagaaaaatc
    13801 atagaaaatt acaaaaacag cctttataaa cctcttattt ttatcgatga aattcatcgc
    13861 ttgagtaaaa ctcaacaaga aatgctttta attcctatgg aaaattatcg ctgcattgtt
    13921 ataggtgcaa gtactgaaaa tccttatttt gttttaagtt caggcattag aagtcgctct
    13981 atgctttttg aatttaaaaa tcttgggcaa aaagatttag aacttttatt agagcgagtg
    14041 caacaaaaaa tagcatttaa aatagaagat aatgctaaag aatttttact aaaaagcttc
    14101 gatgctagag caatgttaaa tttacttgaa tttgctttgg ttttaaatga aaaagaaatc
    14161 actttagaaa atttaaaaaa acttcgcaac ggagtaaata gcgagggtgt aagctcaaaa
    14221 gatactcatt atattttagc aagtgctctt attaaaagtt tgcgcggaag cgatgtggat
    14281 gctgctattt attatcttgc tcgtttaatt gatgcaggag aaagtgctga ttttatcgct
    14341 aggcgtttga ttatctttgc aagtgaagat atatccaatg ccgatcctaa tgctttaaat
    14401 ttagccgttt ctactcttac cgcagtaaaa aatatcggct atcctgaagc aagaattata
    14461 ctttctcaat gcgctgtcta tctagcaagt gctccaaaat caaattcaag ctataatgct
    14521 ataaacaagg ccttagatta tgtaaaaaac aatcctgcac ttgaaatccc caattattta
    14581 aacaataatc atcctgaaaa gaaaaattac ctttatccgc acaattttgg cggatgggtg
    14641 aagcaaaact acctgagtgc aaatttaaaa ttctatgaaa gcaagggcat aggagaagaa
    14701 gcgagattgc ttgaaaattt aagcaaatta aaaaacatca agtcctgatt tcttataaaa
    14761 aatttacaaa ataaatgtta aaatgcaatt ttatctttaa ggaaaaaata agacacaatg
    14821 ataaacatag gaatttatgg cgctaaaggg cgcatgggca aacagatcga agaatgttta
    14881 aaaagtgaaa ctaaagcaaa agcagctgca ctttttgata agggtgataa tttagaagaa
    14941 ttttttgaaa aaagtgatgt tatcatcgac ttctcatctc caaatggcac tcacgaactc
    15001 ttaaattacg caagaacaat gccaaaacct ttagtaattg gcacaacagg gctggatgaa
    15061 aaaaccctgc atttaatgca aaatgcaagc gaagtaatgc ctgtttttta tgcgactaat
    15121 atgtctttag gggttgcagt tttaaaccat ctggctagca aagcaagcca aatgttaaga
    15181 aattttgata tagaaatttt agaaatgcac catcgtcaca aaaaagacgc tccaagtggt
    15241 actgctatga ctttagcaca aggtgtagca aaagctagaa atttagatct tgaaaaagta
    15301 agaatcagcg gaagagatgg tatcataggc gaaagaagca aagatgaaat tgccgtgatg
    15361 agtctaagag gtggagatat tgtaggacgc cacactgtgg gcttttatga agagggtgaa
    15421 tttttagaat taaaccatac cgcaacttca agagcaactt ttgctaaagg agcgattaaa
    15481 atcgctattt ggcttaatgc acaaaagcca aaaatgtact caattaatga ttttttagga
    15541 atttaaaatg tgtgcagtag taggagttat aaattcaaaa aatgcaagta cttatgctta
    15601 ctatgctctt tttgccatgc aacaccgagg acaagaagca agcgggatta gtgtaagcaa
    15661 tggtaaaact atcaaaacta tcaaagccaa aggcgaagta aatcaaattt ttaaccctga
    15721 gaatctaaaa accctagaag gtgaaatcgc cataggacac aatcgctatt ctaccgcggg
    15781 aaattcaagc ttaaatgatg cccaacccgt agctgcgact tcagtcttag gggatattgc
    15841 tttagcacac aatggaaatt tagtcaacaa agaaaaagta agatcaaaac tcatcgaaga
    15901 tggagctatc tttcaaacca atatggatac tgaaaatgtc gttcatctca tagcaagaag
    15961 taaaaaagaa agcttaaaag atagatttat cgaaagtttg caagaatgca taggggctta
    16021 ttgttttgtt ttagcaagta aagacaagct ctatgttgca agagatcctt atggggtgcg
    16081 tcctttatct ttagggcgct taaaagatgg aggctatatc gtagcaagcg aaacttgcgc
    16141 ttttgatctt atagaagcag aatttatacg cgatgttaaa cctggagaaa tgattatttt
    16201 cactcaagga aatgataaat ttgaaagcat agaacttttt aaacaagagc ctagaatttg
    16261 tgcttttgaa tatatttatt ttgctagacc tgatagcatt atagaaggaa aaagcgtgta
    16321 tgagatacgc aaaaaaatgg gcgaagcttt ggcaaagaaa tttactcata gtgctgattt
    16381 tgtagtgcct gttccagata gtggcgtaag tgctgccata ggcttttcac aatatttaaa
    16441 aattccactt gaaatggcta tagttagaaa ccattatgta ggtagaacct ttatcgaacc
    16501 tactcaagag cttagaaatt taaaagttaa attaaaatta aatcctatgc ataaagttct
    16561 aaaagataaa gaaattgtcg tagtagatga tagtttagtg cgtgggacaa cttctaaaaa
    16621 aatcatttcc ctacttcgtg ccgcaggtgc aagtaaaatt cacttggcca tagcttgccc
    16681 tgaaattaaa tttccagata cttatgggat cgatactcca acctttgaag aactcattag
    16741 cgctaataaa aatttagaag aagtacgcga atatgtggaa gcagattcac ttagcttttt
    16801 aagtatcgaa gaattaactc aaagcatagg ggatgagaga agatattctt taattagctt
    16861 tgatggagat tattttatca aataatctct attttacata agagggataa gtaaagaaaa
    16921 acaaatgtgt taaatttaaa ccataatgaa aaaatacact aagccacaaa ctcttactat
    16981 atctccaagc cattccataa atcaaacctg ccaaagaagc aaagattatc attaaaatac
    17041 ctgctttata atgcgccact ccaaatgcca aacttgcaac caaaagtgct cctacacccc
    17101 ctatcaaacc ttgtaatctt tgttgtaaat aacccctaaa aaatgcttct tcaaccaaag
    17161 caaccaaaaa taaattagaa aataaaaaat acactatcca agaaggaaag cctatttcca
    17221 ttttaattac acccaaatac caagggatag ataaaagtaa aaaaggactt gcaaacaata
    17281 acgctgcttg aaataatttt ggttttattc tatttaaatt ctcaaacaaa cttggcataa
    17341 gcaaaaagag taaaaaaaca cccaaaggct tatcaaaact aaaatacaaa gtaaaagcgc
    17401 tactatgctc acttgcatga actttatcta gaatttttac attattaaca cctggaataa
    17461 aatgcaaaaa taaaagcaag caaaatacca ctatcaaaag ctctaaaaat acatttttat
    17521 tatttttata atacaaggac aataaaaaaa atacacccac aaaaacaata aaacttattt
    17581 ctatgatatt atgataataa gccaaaaatc cactgattac caatactaca aaagataatt
    17641 ttattttttt aaatgagagc aaggccaaag ctaaggctaa taagataaaa gttaagatca
    17701 tattttattt ctctttttta atttcatcaa atttcagaaa atagtactac ttaatgaatt
    17761 aaatgtatat aaaaatactt cacaaaaaac acatttaaaa tatttatttt atctttattt
    17821 attgatctta aataaatcat ttggacagca agtattattt ttgataaatt taataaattt
    17881 aaaattgtaa tataaaaaat aaataaaata atgagtattt ttattaaaat cgtagctatt
    17941 ttgtaattta atcttaactc ttagtagcta aaattatgtt taaaaaaaat aataaggagt
    18001 gtctatgaaa ttatcaattc gtaaaaaaat gcttatgcta ggaggcattt gtcttgtttc
    18061 gatgctaata acctttggga ttttttatta caacaatctg caaggaagcg aaaaaatagc
    18121 tcaaataaca aaaaatttga tcaataaaga aataaatatc aaggtagaac tcttaaccaa
    18181 atcgatggct attgctttag gagatttgat caaaaatgtt cacagtgaag aagaaaaagt
    18241 caaaattata gctactgcga ttgaaaattt tagatttgaa gaagataaaa gcggatattt
    18301 ctttgtttat caaaaaacca ccgttaaagc ccatcctgtt agaaaagact taatcgggac
    18361 agatttgtat aatgcaaaag atgaaaatgg agttttttat gtgcgagaat tataccaaag
    18421 agcattagaa aaaggaggat ttgtcacttt ttactttaca aagcctcaac ctgatggaaa
    18481 aaatatcata gcagaaaaaa cagcttatag ttatttaata cctgatacaa atgatttatg
    18541 gatttctaca ggtgtttata aagatacttt agaaccttat attgatggga acttagaaga
    18601 attgttatca tttttttcta aaaacttttt taagactata atatttttta cattatttat
    18661 actcatcatc ataccattta tttttatatt ctatagaaat ctcatcaccg gagttcaagg
    18721 cataaaaaca aacatcacct ccttctttga ttt
//
LOCUS       DARAII010000020        17950 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.020, whole genome shotgun sequence.
ACCESSION   DARAII010000020 DARAII010000000
VERSION     DARAII010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17950
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.020"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..105
                     /locus_tag="SB143_000617"
     CDS             <1..105
                     /locus_tag="SB143_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1698 domain-containing protein"
                     /protein_id="HEF9749175.1"
                     /translation="IDSFSLENFLDPNDKNLTIEGYEAPKRVYVRIKV"
     gene            182..757
                     /locus_tag="SB143_000618"
     CDS             182..757
                     /locus_tag="SB143_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEF9749176.1"
                     /translation="MAKKDIFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     ELDKNFAKSILITTSDMVVDEQGLVFDAFIFAAANYVAQASINKEFSVVIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEIKMFEATIQVVSIDEHIFKLKRPPL
                     NTAKAAENPDSPTSTVNPEAIGSALSASLRK"
     gene            complement(762..935)
                     /locus_tag="SB143_000619"
     CDS             complement(762..935)
                     /locus_tag="SB143_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749177.1"
                     /translation="MKKYILMLALLFGISGCFVNERGISNRFYDDCHEYYDASGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(945..1472)
                     /locus_tag="SB143_000620"
     CDS             complement(945..1472)
                     /locus_tag="SB143_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEF9749178.1"
                     /translation="MRINYKKLFNLRKIASDPKKLLAFLIFALMIAFVQNYIVQNPSF
                     KAQVIRVIDGDTIEISTNNKTSKIRFFGIDAPELKQNFGKQSKAALEKILKDKEVYIF
                     SKNKDNYGRIVAIVKLKDVDINQFLVSQGYAWADTYYTNAYIKEQEKAQKNKLGLWKD
                     DNPIEPYKWRKQNRF"
     gene            1528..2796
                     /locus_tag="SB143_000621"
     CDS             1528..2796
                     /locus_tag="SB143_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEF9749179.1"
                     /translation="MQNVIENFKNLCKIPHCSYQTEQMKEFLSSYAKDKGFKVSIDKA
                     GNIHAIKGNPKICLQSHYDMVCMGEAPKVEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLSSKMLLNLDHESDDEIMIGCAGGVDIEA
                     ELSFSTLKARGKIYELQAQNFKGGHSGINIVRNEKSSIKEMAQFIKENKGKIISFEGG
                     ERINSIPKHAKALVHFENEVKGNGWIKCEFKKEGEFEICDQNEKLLNTINAFAHGVRA
                     YDEHLSIVQTSINLATLKMENQQIKFTLFARSNILDGLKQIEFETMEFFKAFGYKVRS
                     FNFYPPWEGKANALSDKVLKALKKVSPKARVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEITSVEKISRVVFEVLKDNA"
     gene            complement(2779..4026)
                     /locus_tag="SB143_000622"
     CDS             complement(2779..4026)
                     /locus_tag="SB143_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749180.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDTFW
                     MQINAYIAFGAAYLARPFGSIVMAHFGDRYGRKNIFYISMLFMVLPSFALVFLPSYES
                     IGILATLILFLIRILQGLAVGTEVSGAWVYVSEFVKGRQVPLALGFISATLTIGLLLG
                     NLATLGIRSYFSAQEVEEYAWRIPFIVGGFFGFFALFLRTKLSETPEFERIKKENRLL
                     NFPLKDALKTYKTSMLVCFLMTVVLTSGVATLMILPKYLEELLSINKTSALWIQNFAI
                     LAVILGALIQGILASKWGSYRICSIFSITFMFFGMLFSFYDANFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYALLGFLTPFIVNAFYKEYMGVYLMVVGCCS
                     LFSVFLLKRIFARSEAKELSVVF"
     gene            complement(4068..4907)
                     /locus_tag="SB143_000623"
     CDS             complement(4068..4907)
                     /locus_tag="SB143_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEF9749181.1"
                     /translation="MKKMLLSIFTTFVAVFLAACGGNSDSGASNSLERIKQDGVVRIG
                     VFGDKPPFGYVDEKGVNQGYDIVLAKRIAKELLGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPERAEQVDFCLPYMKVALGVAVPQDSNISSIEDLKDKTLLLNKGTTAD
                     AYFTKEYPDIKTLKYDQNTETFAALIDQRGDALSHDNTLLFAWVKEHPEFKMAIKELG
                     NKDVIAPAVKKGDKELKEFIDNLITKLGEEQFFHKAYDETLKSHFGDDVKADDVVIEG
                     GKI"
     gene            5105..6208
                     /locus_tag="SB143_000624"
     CDS             5105..6208
                     /locus_tag="SB143_000624"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749182.1"
                     /translation="MKKSIALTLGAIFFFSACSNSLDKTTVAKYEERLNTQINETLKD
                     FQQDMGVRIEISNFSCKGDGMFLRCSSPNFNVFAKDNTQTEQKLIEAKNLEIYSNEIY
                     TGEEQGLISLKDYYDNLLSKNKNLKTSFTLEGFKLGEKVISDINASLSQSDPKIQDYL
                     AKLSSGVFTLSFENSLFVKNSDYNNNFNMKINNQDLNFDMNLNFDYKQSLLDFFEKAG
                     IKYNTQTYAIDEKAVEELLDQQGFAQPIQESVILNNFKINSSLDTQGVFENYITIAKG
                     GLEALKIQSQNEEQTLLIDKALLALNEITKDEVYKLDLEAKFKPIALSDYPKEGINAV
                     EKLTVNNQDFTETLRILFGFMMIPIMLGGATGF"
     gene            6318..7058
                     /gene="yaaA"
                     /locus_tag="SB143_000625"
     CDS             6318..7058
                     /gene="yaaA"
                     /locus_tag="SB143_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEF9749183.1"
                     /translation="MKILFSPSESKNDTCKEKPIDKSSFIFENLFDFRMQAVKKYEEY
                     INNADLKALQELFGIKNENEISNFQRDLKNSPTQQAITLYSGVSYEYLNFDILDKESQ
                     KYILENTLIFSNLFGVVKASDHLPFYKFKQGAKINNFALEKFYKEHFSKALDEYLKNE
                     ELLDLRAGFYDKFYTPKRKFSTYKFIKKGKVVSHFAKAYRGILLALCARIKAKNNAEI
                     LNHLPSNLSLKEIQNKGLKEEIVLKILD"
     gene            7257..7460
                     /locus_tag="SB143_000626"
     CDS             7257..7460
                     /locus_tag="SB143_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749184.1"
                     /translation="MQYFFVFLIIIFLFIVFMLIMRYEKKLELLNQSIQNIKEEVNEL
                     KNTTQNNRSLIEKNRSDIESINK"
     gene            complement(7463..8203)
                     /locus_tag="SB143_000627"
     CDS             complement(7463..8203)
                     /locus_tag="SB143_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749185.1"
                     /translation="MKITFQGKSDEYEIEKSYFYNRAFIVKDKIPNRDKIDFITDSVR
                     LLEFSDHSFEFDEILKCLYDENEENTIIVEEIFTTSQIKQDEEPRNPPLEIKIDEAPK
                     NNTRFTPFNTFSRIFNKDCFIFTSDNCEQKESVKVEKNQKLNIFESLKIEDLDASFVK
                     IEILDYDASNDSVNFDLDAFPSGASYKYGISQNTMYIILQGKMPSLLLLDFLKSFVYK
                     NKKELACEKTFVLMLNHKLVYELKAFFT"
     gene            complement(8204..9469)
                     /locus_tag="SB143_000628"
     CDS             complement(8204..9469)
                     /locus_tag="SB143_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEF9749186.1"
                     /translation="MNFSQISDACVKCGKCIPVCTIHEVNRDETTSPRGFLDLLAAYK
                     EEKLELDKEAKKIFESCFLCTNCVEVCPSKLRVDNVIEEVRYDIAKKFGIAWYKKIIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQSQDQNVGMKAKFSMPFVKKGRLLTSFNKKSF
                     LKSNPDFIDNGGEKTVGFFVGCLANYFYIDTANAVLKIAKEVKINVDLMKEQVCCGAP
                     QFFTGDFKSVEILAKKNIEYFEKKLEKLDAIIIPEATCSAMLKIDLEHFFNIQNEPEW
                     AKRAQKISSRIYMASEYFYKFTNLKELLESKKKLNYSITYHDPCHARKMQGVFKEPRE
                     LLKANYHFVEMSNPNACCGFGGVSMQTDYYDRALSVGLKKASMIDESKACVVSAECSA
                     CRMQISNALEQNSSKAIFASPLELIAKAL"
     gene            complement(9480..10835)
                     /gene="hemN"
                     /locus_tag="SB143_000629"
     CDS             complement(9480..10835)
                     /gene="hemN"
                     /locus_tag="SB143_000629"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEF9749187.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQNK
                     ALSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLKYLFQELDILSTIIDTKREVVQM
                     HFGGGTPTFFSAKQLESLILKIKSVFGNFTKDAEISCEIDPRFLNEEQADVLTKNGFN
                     RISFGVQDFDERVQKEIHRIQPFELTQNALKLVRDRGIKSVNMDLIYGLPFQSLQSFA
                     KTLEKAMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLTQNG
                     YKMIGMDHFAKEEDELFKALENGTLHRNFQGYTTKDGADLIGIGLTSIGEGQSHYAQN
                     FKDMPSYEAAISEGRLPFERGIKLSYDDELRKAVIMDLMANFRLDIKAIEKEFKINFK
                     EYFKEDLKALEEYKEFIDLSENFILVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            complement(10822..11313)
                     /locus_tag="SB143_000630"
     CDS             complement(10822..11313)
                     /locus_tag="SB143_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEF9749188.1"
                     /translation="MKELEKYSNCLKRIDEFSQNLGMKKEDRAIFEMKQSENENEKCL
                     ILKNGSFDSPEPWFIMDENDQIHTLISLNSLKNILENLKQTQKENFELRLEKAIYQQI
                     PIDFSDVWIVAMDEIKRKAQEGVMEISIDLEKLLADIKKEHPNLFVDMQAMVERVKNN
                     ERL"
     gene            complement(11363..12274)
                     /gene="argF"
                     /locus_tag="SB143_000631"
     CDS             complement(11363..12274)
                     /gene="argF"
                     /locus_tag="SB143_000631"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEF9749189.1"
                     /translation="MRHFLTLRDFSKYEILSLVEHASELKKNPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPIKDTARVIGAMVDFVMMRVNKHE
                     SLVEFAKYSKAPVINALSELYHPTQVLGDLLTIKECGKMKDDIAKVAFVGDSNNMCNS
                     WLIAAAILGFDFSVALPKNYEINSEILEFAKEKAKISGAKIFLTHDKFEAIKGKDVVI
                     TDTWVSMGEESEKEKKIKDFDGFIIDEEAMNAANQDAILLHCLPAYRGYEVSEESFEK
                     HSKVIFEEAKNRLYVVKALLCFLNKEK"
     gene            complement(12271..13254)
                     /gene="hemB"
                     /locus_tag="SB143_000632"
     CDS             complement(12271..13254)
                     /gene="hemB"
                     /locus_tag="SB143_000632"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEF9749190.1"
                     /translation="MFKRFRRLRLNESLRAMVREHTLSINDFIYPLFVVNGKGIKKEI
                     SSMPDVFQMSLDEILKECKIISELGIKAIILFGVLENDKKDSCGSDAMDDEGLIARSI
                     REIKKEFPNLFVISDLCFCEYTDHGHCGIIDPKTKSVDNDATLEISAKQALVHARAGV
                     DMIAPSGMMDGIIETLRKALDEEGFENLPIMAYSTKFASSYYGPFRDVADSTPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAGRAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            13333..13893
                     /gene="ribA"
                     /locus_tag="SB143_000633"
     CDS             13333..13893
                     /gene="ribA"
                     /locus_tag="SB143_000633"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEF9749191.1"
                     /translation="MDIKISEIANLPSKWGSFQIQSFKEGEKEHLCIFKNTPQDILNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKHGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYKISKVNLLTNNPQKIHSIQDKIMAR
                     VPILINPNRFNANYLEVKQNQMGHLL"
     gene            13890..14489
                     /gene="rsmG"
                     /locus_tag="SB143_000634"
     CDS             13890..14489
                     /gene="rsmG"
                     /locus_tag="SB143_000634"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEF9749192.1"
                     /translation="MNLDFLNLILSDFNEEDFRAKLKIYKEILNKFNRIHNLTQLKNI
                     DENILDSIEILKYFDFSKAKNIVDIGSGAGFPAIFLAFILPSNFHLFEPNPKKAAFLR
                     SIKIECNLTNLTVYKEKVENYKSSFKADIITSRALMDVKPLIKLCLNISDQKTIFILW
                     KGSEIFDEVEGLKDYDIFENGLRRYCVLKNTQSGMNTTL"
     gene            complement(14490..15062)
                     /locus_tag="SB143_000635"
     CDS             complement(14490..15062)
                     /locus_tag="SB143_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749193.1"
                     /translation="MKKMFYGIAVSLILATSLSAVSFNQDSLKVSFEGYKTEDMVGVG
                     GEFKDVKYKFSKNTSTLASYLKGARAVVNPSSVFMGEGNEIITDNLAKVFFPSLLGNS
                     DIKVVFKDVVTGENKGVISARVTIDKKSTLVPLSYTIENNKFVAKGQLDLHAFKNSSQ
                     ALKALSDVAPGHGGISWPLVDIVFSADVVQ"
     gene            complement(15155..16249)
                     /locus_tag="SB143_000636"
     CDS             complement(15155..16249)
                     /locus_tag="SB143_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEF9749194.1"
                     /translation="MIKKIEHYKNILISNFKGLIFTASIVFFAMYLSSVQSIKDTTHL
                     AAAAFAIIIGALLSPWFFKYQHHLQAGVHFSAKKLLRLGIILYGFNITLTELLSVGLK
                     GFILSMIVIFFIFILALIVGVKVFKLDKETSMLVGAGSAICGAAAVLALESSLKSDPF
                     KGILAVGTVVIFGLVFMFLYPIVFSLDLFPYFNQHAMGIFMGATLHEVANVVGAAEMA
                     KDMANFDQSASNIAIIIKMMRVILLVPFLLIITYFFAKNQHSSKEKTEKNISIPYFAF
                     IFLGVIVINTYLASRENFLGISTSDIISFGKLLCTLCIVFAMAALGLQIDFKKFLKSG
                     SRVFGLAFVLGLVLVFGGYFLTLFFRGILW"
     gene            16393..17274
                     /locus_tag="SB143_000637"
     CDS             16393..17274
                     /locus_tag="SB143_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEF9749195.1"
                     /translation="MKIKDMEIFLDLLNTQSPTNTANNFSITQPNVSIIIKNLEQDLG
                     GALFERLGKKLLPTPKALYLGKIWLKLVQDYYKSLEELNDENTLLGEIKIAATQSIAE
                     HFLAPILFDFKSKFSNVKIHFQTQNSKECLNLLKNGDIEFAIVEAELNPTLIDHEGLK
                     MEFWQKDELVVASSNKNLSQKEFYIDELLKQKWILRETGSGLRDKFLNEIGDVSKKLK
                     FFLELDRMPAIKELVIQKNAISIFSKKSIEKELKNSILYEVKLKNINLWRNFYILKRK
                     NYNFNRALEKFEKIFKQ"
     gene            17349..>17950
                     /locus_tag="SB143_000638"
     CDS             17349..>17950
                     /locus_tag="SB143_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEF9749196.1"
                     /translation="MNAKTQDMELEELFKENEKDYITYEKLVKYFSKQPNSATAKKVQ
                     TLMKKYKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYREPLI
                     NRERRVKELFKSFDDEEKNDDKLDELEDEDEENDEELENE"
BASE COUNT         6505 a         3057 c         2396 g         5992 t
ORIGIN      
        1 attgattctt tttctttgga aaatttttta gatccaaacg ataaaaacct cactattgag
       61 ggctatgagg cacctaaaag agtctatgtt cgcataaagg tataaatttt ttaattacta
      121 agccgatata gcatcaagaa atgttttgaa gtagataata tagaacacca aaggcgcaaa
      181 aatggcaaaa aaagatattt ttgaagaata tgcacaactt gaagaatatg catccgctga
      241 ggatatctct cgtgtaagag ctgaactttt aacttgtcca gaactcaaca cctccttagc
      301 aggaactatt atcgagcttg ataaaaattt tgcaaagtcg atactcatca ctacaagcga
      361 tatggttgta gatgaacaag ggttagtttt tgatgctttt atttttgctg ctgcaaacta
      421 tgtcgcacaa gcttcaatca ataaagaatt ctctgttgtt atcggttcaa aatgtttctt
      481 ttatgctcca cttaaattag gcgatgtttt agaacttgaa gctcatgctt tgtttgatga
      541 aacttctaaa aagcgagatg taaaagttgt aggacatgta aaagagatta aaatgtttga
      601 agcaaccata caagttgtta gtatagatga gcatatattt aaactcaagc gacctcctct
      661 taatacagcc aaagcagcag aaaatcctga ttccccaaca agcacagtaa atcctgaagc
      721 gataggatca gcattatcag catctttacg caaataaatc atcaaggagt cattttaata
      781 tctacccaat ttttagggca gtccttatga taagttccac ttgcatcata atattcatgg
      841 caatcatcat aaaaccgatt tgaaatgcct ctttcattta caaaacatcc tgatattcca
      901 aaaagcaaag ctagcattaa aatatatttt ttcattacct gcctttaaaa tctattttgt
      961 ttgcgccatt tataaggctc tattggatta tcatctttcc aaagacccag tttatttttt
     1021 tgagcttttt cttgctcttt aatataagca ttggtgtaat atgtatccgc ccaagcatat
     1081 ccttgactca ctaaaaactg attaatatcc acatctttaa gctttacaat agcgacaatt
     1141 ctaccataat tatctttgtt tttagaaaaa atataaactt ccttatcttt taaaattttc
     1201 tcaagtgctg cttttgattg tttgccaaaa ttttgcttta actcaggcgc atctatgcca
     1261 aaaaatcgta ttttactggt tttattgttg gtactaattt ctatggtatc accatcaatc
     1321 accctaatca cttgagcttt aaaactagga ttttgtacta tataattttg tacaaaagcg
     1381 atcattaaag caaaaatcaa aaatgctaaa agtttcttag gatcgcttgc aatttttctt
     1441 aaattgaata attttttata atttattctc attatttcct taaattttta aaaatatgcc
     1501 ataattttaa caaaaaaagg agatagaatg caaaatgtta tagaaaattt taaaaatttg
     1561 tgcaagattc cacattgtag ctatcaaaca gaacaaatga aagaattttt aagctcctat
     1621 gctaaagata aaggctttaa agtaagcata gataaagcag gaaatattca cgctattaaa
     1681 ggaaatccta aaatttgcct ccaaagtcat tatgatatgg tttgcatggg agaagctcca
     1741 aaagtagaag tatatgaaga aaatggcttt ttaagagcta aaaattcaag tcttggagcg
     1801 gataatggca taggaatagc cattatgatg agcgctatgg ctgaatttga aaatctagaa
     1861 tgccttttta caaatgatga ggaagtcgga ctcatgggag taaattcact cgagcacact
     1921 ttaagttcca aaatgctttt aaatttagac catgaaagcg atgatgagat catgataggt
     1981 tgtgcaggtg gagtagatat agaagctgag ctaagcttta gcactcttaa agcaagaggt
     2041 aaaatttatg aacttcaagc acaaaatttt aaagggggac attcagggat caatatcgtg
     2101 cgcaatgaaa aaagttctat caaggaaatg gctcaattta tcaaagaaaa taaaggaaaa
     2161 atcatctctt ttgaaggtgg agaaaggata aattctatcc ctaagcatgc taaagccttg
     2221 gtgcattttg aaaatgaagt aaaaggcaat gggtggataa aatgcgaatt taaaaaagaa
     2281 ggtgaatttg aaatttgcga tcaaaatgaa aagcttttaa ataccatcaa tgctttcgca
     2341 catggagtta gagcttatga tgaacatttg agcatagtgc aaactagcat caacctagcc
     2401 actttaaaaa tggaaaatca acaaatcaaa tttacacttt ttgcaagatc taatatatta
     2461 gatggtttaa aacagataga atttgaaacc atggaatttt ttaaagcttt tggctataaa
     2521 gtaagaagtt ttaattttta tcccccttgg gaaggcaaag ctaatgcact gagcgataaa
     2581 gtgctaaaag ctcttaaaaa agtatcgccc aaagctagag tttcggctat ccatgcagga
     2641 ttagaatgcg gcatcataga aaaaaaacaa gaacttttat gtgcttctat agggccaaat
     2701 atccacaatc cccactcaac tgatgagcac tgcgaaatca cttcggtaga aaaaatatct
     2761 agagttgttt ttgaagtttt aaaagacaac gcttagttct tttgcctcgc tccttgcaaa
     2821 aatacgctta agtaaaaata cgctaaataa ggagcagcat cctaccacca taagatagac
     2881 acccatatat tctttataaa aagcattgac tataaaaggg gttaaaaagc ctaaaagtgc
     2941 ataagaaata ttataagcaa agctaagtcc actgaattta agttcacttt tgaaaatttg
     3001 agtcataaaa acaggagcaa aagtaataat tccttgagca aaacaagcaa gtaaaaaata
     3061 aaataagaaa tttgcatcat aaaaactaaa aagcatgcca aaaaacataa aagttatgct
     3121 aaaaatagaa caaattctat aacttcccca cttgctagcc aaaattcctt gaatcaatgc
     3181 ccctaaaata acagccaaaa tagcgaaatt ttgtatccat aaagccgagg ttttatttat
     3241 agacaataac tcttcaagat attttggaag tatcatcaaa gttgctacac cgctggttaa
     3301 aacaacggtc attaaaaagc atactaacat gcttgtttta taagttttaa gtgcgtcctt
     3361 taaaggaaaa tttaaaagtc tattttcttt ttttattctt tcaaattcag gagtttcgct
     3421 aagttttgtt cttaaaaata aggcaaaaaa tccaaaaaat cctcctacaa taaaaggaat
     3481 tctccaagca tactcttcaa cctcttgcgc gctaaaataa gatcttatcc ctaaagtggc
     3541 aagatttcct agcaataaac ctatagtcaa agttgctgaa ataaaaccta aagctaaagg
     3601 aacttgacgc cctttaacaa attcacttac atatacccaa gctccactta cttctgtccc
     3661 tacagctaag ccttgtaaaa tgcgaattaa aaataaaatc aatgtagcaa gtatacctat
     3721 actctcatag cttggcaaaa acaccaaagc aaaactaggc aaaaccataa aaagcataga
     3781 tatgtaaaaa atatttttac gcccgtatct atcgccaaaa tgcgccataa caatagatcc
     3841 aaaaggacgc gccaaataag cagcaccaaa ggctatataa gcatttattt gcatccaaaa
     3901 agtatcattt tgaggaaaga aaaccttagc aaaaatatcc aaaaaaaagg caaagagcac
     3961 aaaatcataa aattctaaaa ttccgcccaa agaagcataa attatatttt tgtatttttt
     4021 ttgcatattt tatcctaaat caactaaagg gcaaaagccc ttttttgtta aattttaccg
     4081 ccttcaataa ctacatcatc ggcttttaca tcatctccaa aatgactttt taaagtttca
     4141 tcataagctt tatggaagaa ttgttcttct cctaattttg tgattagatt atcaataaat
     4201 tctttaagct ctttatcacc ttttttaaca gcaggagcaa ttacatcttt attgcccaat
     4261 tctttaatgg ccattttaaa ttcaggatgt tcttttaccc acgcaaaaag caaagtattg
     4321 tcatgactta aagcatcacc tctttgatct attaaagcgg caaaagtttc ggtattttga
     4381 tcgtatttta atgttttaat atcaggatat tcttttgtaa aatacgcatc agcagtagtt
     4441 cctttgttta aaagtaaagt tttatctttt aaatcttcta tgctactgat attgctatct
     4501 tgaggcacag ccacacctaa agctaccttc atataaggta agcaaaaatc cacttgctct
     4561 gctctttcag gtgtttgagt aaaattagct aaaataatat caactttatt tgattttaaa
     4621 aattccaccc tatttgcagc ttcaactaat acaaactgca ccttattttc atctcctaag
     4681 agttcttttg ctatacgttt cgccaagact atatcataac cttgatttac gcctttttca
     4741 tctacataac caaaaggcgg tttatctcca aaaactccta ttcttactac tccatcttgc
     4801 ttgattcttt caagagaatt tgaagcacca gaatctgaat ttcctccaca agcagccaaa
     4861 aatactgcaa caaaggttgt aaaaatactt aagagcattt ttttcatact tttcctttct
     4921 tggtataaac cctaatttat tttgcaaaaa atgcaaaagc attatacttt aaaaaaaagc
     4981 atatttcaat tttttaagat aaaattattt cttcttgtgt aaaaaagtaa tatcaatatc
     5041 aaagcataaa aatttaagta taagattgtt ataatttata aaactatatt aaggagaaga
     5101 ttttatgaaa aaaagtattg ctctaaccct aggtgctata tttttctttt cagcgtgcag
     5161 caactcgctt gataaaacaa cagttgcaaa atatgaggag cgtcttaaca ctcaaataaa
     5221 tgaaaccctt aaggattttc aacaagatat gggtgtaaga atagaaattt ctaatttttc
     5281 ttgtaaaggc gatggaatgt ttcttagatg ttcaagccct aattttaatg tttttgcaaa
     5341 agacaatacc caaacagagc aaaaactcat cgaagcaaaa aatttagaaa tttattctaa
     5401 tgaaatttac acaggagagg agcaaggctt aatctcttta aaagattatt acgataatct
     5461 attgagtaaa aataaaaatt taaaaacaag ttttacccta gaaggattta aacttggaga
     5521 aaaagtaatc agcgatatca atgcaagctt atctcaaagc gatccaaaga ttcaagatta
     5581 tctcgctaaa cttagttcgg gtgtctttac actttcattt gaaaattcac tttttgtaaa
     5641 aaatagcgat tataataaca atttcaacat gaaaataaac aatcaagact taaatttcga
     5701 tatgaattta aattttgact acaaacaaag cttgcttgat ttcttcgaaa aagcaggaat
     5761 taagtacaat acacaaacct atgcaataga tgaaaaagcc gtagaagaac ttctagatca
     5821 gcaaggattt gctcaaccta tacaagaaag cgttatctta aataatttta aaattaactc
     5881 ttctttagat acccagggtg tttttgaaaa ttatataaca atcgctaaag gtggcctaga
     5941 agctcttaaa attcaaagtc aaaatgaaga acaaaccttg cttatagata aagctttgtt
     6001 ggctctaaat gaaatcacaa aagatgaagt ctataaactt gatttagaag ctaaatttaa
     6061 acctattgca ttaagtgatt atcctaaaga aggtattaac gcagtagaaa agctaactgt
     6121 taacaatcaa gactttacag aaacacttag aatacttttt ggctttatga tgatacctat
     6181 aatgcttgga ggtgcaacag gcttttaagt aatatggaga gaaatctcca tatactcttt
     6241 tacctttttt aagcctagtt ttatatattt ttcgatattt tttagtcttt aattttaaag
     6301 atttaaaaag gacaaaattg aaaattttat tctctcctag cgaaagcaaa aacgatactt
     6361 gcaaagaaaa acctatagat aaaagctctt ttatatttga aaatttattt gattttagaa
     6421 tgcaagctgt aaaaaaatat gaagaatata tcaataacgc tgatttgaaa gccttgcaag
     6481 aactttttgg tataaaaaat gaaaatgaaa tttctaattt tcaaagagat ttaaaaaatt
     6541 ctcctaccca acaagctata acgctttata gcggggtgag ttatgagtat ttaaattttg
     6601 atattttaga taaagaaagt caaaaataca tccttgaaaa cactcttatt ttttcaaatc
     6661 ttttcggggt agttaaagca agcgatcatt tgccttttta taaattcaaa caaggcgcga
     6721 aaataaataa ttttgcttta gaaaaatttt acaaagaaca ttttagtaaa gctttagatg
     6781 aatatttaaa aaatgaagaa ctgcttgatt taagagcggg tttttatgat aaattttaca
     6841 ccccaaagcg caaatttagt acttataaat ttataaaaaa gggtaaggta gttagccatt
     6901 ttgctaaagc ttataggggg attttacttg ctctttgcgc aaggattaaa gctaaaaaca
     6961 atgctgagat tttaaatcat cttccatcta atttaagtct taaagaaatt caaaacaagg
     7021 gtttaaaaga agaaattgtg cttaaaattt tagattaatt tccaaacaca atttatctct
     7081 cgccataccc tcttatttaa taatcaattt taaaaatatt gtttcaatat agatataatt
     7141 ttaaaaaata tttgttttat tttgtttaat tttatgaaat taaaaattaa tacctaaaat
     7201 catctctttt taagaaaatt atttatagta ttataggtga gaataaagga gaacaagtgc
     7261 agtatttttt tgtattttta attattatat ttttatttat tgtatttatg ctcatcatgc
     7321 gctatgagaa aaaacttgag cttttaaatc aaagcataca aaatataaaa gaagaagtga
     7381 atgaacttaa aaacactact caaaacaatc gctctttgat tgaaaaaaat cgctctgata
     7441 ttgaaagtat caacaaataa tttcaagtaa aaaaagcctt aagctcataa actaacttgt
     7501 gatttaacat taaaacaaat gttttctcac aagctagctc ttttttgttt ttataaacaa
     7561 aactttttaa aaaatcaaga agtaaaaggc ttggcatttt tccttgtaaa attatataca
     7621 tggtgttttg agaaattcca tacttataac ttgctccact aggaaaggca tcaaggtcaa
     7681 aattcacact gtcattacta gcatcataat ctaaaatttc aatctttaca aaactagcat
     7741 ctaaatcttc aattttcaat gattcaaaaa tattcaattt ttgatttttt tctaccttca
     7801 cactttcttt ttgctcacaa ttatcggatg taaaaataaa gcaatccttg ttaaagattc
     7861 ttgaaaaagt attaaaagga gtaaatcttg tattattttt aggagcttca tcaatcttta
     7921 tttctaaagg tggattgcgt ggctcttcat cttgttttat ttgacttgtt gtaaaaattt
     7981 cctctactat gatggtattt tcttcatttt catcatacaa gcattttaaa atttcatcaa
     8041 attcaaagct atgatcacta aattccaaaa gccttacact atcagttata aagtcgatct
     8101 tatctctatt gggaatttta tccttaacta taaatgccct attgtaaaaa tatgattttt
     8161 ctatctcata ttcatcactt ttaccttgaa aagttatttt catctataag gctttcgcta
     8221 taagttccaa aggacttgca aaaattgctt tactagaatt ttgctccaaa gcatttgaaa
     8281 tttgcattct acatgccgaa cattcggcac taactacaca agctttgctt tcatcaatca
     8341 tacttgcttt tttaagtcct acgctcaaag ccctatcata ataatccgtt tgcatactta
     8401 ccccaccaaa accacagcat gcattaggat tactcatttc aacgaaatga taatttgctt
     8461 ttaaaagctc tctaggctct ttaaaaaccc cttgcatctt tctcgcatga caaggatcat
     8521 gataagtaat gctataatta agctttttct tactttctaa aagctctttt aaatttgtaa
     8581 atttataaaa atactcacta gccatataga tgcgagagga aatcttttga gctcttttgg
     8641 cccactctgg ctcattttgt atattaaaaa aatgttctaa atctattttc aacattgccg
     8701 agcaagttgc ctcaggaatg ataatagcat caagcttttc taattttttt tcaaaatatt
     8761 ctatattttt cttagccaaa atttcaacac ttttaaaatc acctgtaaaa aattgcggtg
     8821 caccacaaca aacttgctct ttcattaaat ccacattgat ttttacttct ttggcgattt
     8881 taagtacagc attagctgtg tctatgtaaa aataatttgc caaacaaccc acaaaaaaac
     8941 ctacagtttt ttctcctcca ttgtcgataa aatcagggtt tgactttaaa aaactttttt
     9001 tattaaaact cgtaagcaat cttccttttt taacaaaagg catggaaaat ttagccttca
     9061 tacctacatt ttgatcctga ctttgaattt taaaagcaca gctttgaaac acatagccta
     9121 atttcgcgac caaatctaaa attttacgcc ttcttaagaa aaaaaagata atttttttat
     9181 accatgctat accaaatttt ttagctatat catagcgcac ttcttcgatg acattatcta
     9241 ctcttaattt actcggacaa acctcgacgc aatttgtaca caaaaaacag gattcaaaaa
     9301 tctttttagc ctctttatct agctctaatt tttcttcctt ataagctgct aaaagatcta
     9361 aaaaacccct agggcttgta gtttcatcgc gatttacttc atgaatagta caaaccggaa
     9421 tacattttcc acatttaacg caagcatcac ttatttgact aaaattcatc accatcccat
     9481 caaaccgttt tagaaaagac ttttttatct tcacttatat ttttcatata agcatcaaaa
     9541 cacatagcta tatttcgtat caacaaaacg cctgtttcat ttactaaaat aaaattttca
     9601 ctcaaatcaa taaattcttt atattcctcc aaagctttta aatcttcttt aaaatactct
     9661 ttaaaattga ttttaaattc tttctctata gctttaatat ctagtctaaa atttgccatc
     9721 aaatccataa tcacagcttt tctaagctca tcatcatagc ttagcttaat ccctctttca
     9781 aaaggcaatc ttccctcgct aatcgcagct tcatagcttg gcatatcttt aaaattttgt
     9841 gcataatgac tttgtccttc tcctatacta gtaagtccta taccgatcaa atctgcgccg
     9901 tccttagtag tatagccttg gaaattccta tgtaaagtcc cattttccaa agctttaaaa
     9961 agctcgtctt cttctttggc aaaatgatcc atacctatca ttttataacc attttgagtc
    10021 aaaaatttct cacaaaattc caaaatttca agcttaacat cagggcttgg caaagtattt
    10081 tcatcaaatt ttctcatatt tttcttaagc caaggtacat gagcgtaatt aaaaatagcc
    10141 aaacgatccg gatttaaaag catagctttt tccaaggttt tagcaaagct ttgcaaactt
    10201 tgaaaaggca aaccataaat caaatccata ttgacagatt ttatccccct atctcttacc
    10261 aattttaaag cattttgcgt tagctcaaag ggttgaattc tatgaatttc tttttgcact
    10321 ctttcatcaa aatcttgcac gccaaaactg atgcgattaa aaccattttt ggttaaaaca
    10381 tcagcttgct cttcatttaa aaaacgcgga tcaatttcac agctaatttc agcatctttg
    10441 gtaaaatttc caaaaacaga tttaattttt aaaattaaac tttctagctg tttagcacta
    10501 aaaaaagtag gcgtcccacc accaaagtgc atttgcacca cttctctttt agtatctata
    10561 atagtgctta aaatatcaag ttcttgaaaa agatatttta aatatctctc cttactttct
    10621 tctttggcgg tataaataac attacagcca cagaaataac aagcacttct gcaaaaaggc
    10681 aaatgaaaat aaagcgataa agctttgttt tgctttttta aaatttctat atattcttca
    10741 tatttgaaat ttgtgttaaa ttccactgca gtaggataag aagtataacg cggtcctgcc
    10801 ttagaatatt tcacaaaagc cttataatct ctcattattt tttacccttt ctaccatagc
    10861 ttgcatatct acaaataaat ttggatgttc ttttttaata tctgcaagca atttttcaag
    10921 atcaatactg atctccataa caccctcttg cgccttgcgt tttatctcat ccattgccac
    10981 tatccacaca tcactaaaat caataggaat ttgctgataa atcgcttttt caaggcgaag
    11041 ttcaaaattc tctttttgag tttgttttaa attttctaaa atatttttaa gactatttaa
    11101 agaaataagt gtatgaattt gatcattttc atccattata aaccaaggtt caggagaatc
    11161 aaaactacca tttttaagta tcaagcattt ttcgttttca ttctcacttt gcttcatttc
    11221 aaatatagct ctatcctctt ttttcatgcc taaattttgg ctaaattcat caatgcgttt
    11281 taagcaattg ctatattttt caagttcttt cactaaaaac tccttatcct atcttctcca
    11341 acttatgaaa ttatataaaa tcttattttt ccttatttaa aaagcaaagc aaggctttta
    11401 ccacataaag gcgatttttt gcttcttcaa aaatcacttt tgaatgcttt tcaaagctct
    11461 cttcgcttac ttcataaccc ctataagcag gtaagcagtg caataaaatc gcatcttgat
    11521 ttgccgcatt catagcctct tcatcaataa taaagccgtc aaaatcttta attttctttt
    11581 ctttttcact ctcttcaccc atagaaaccc aagtatcggt aatgactaca tctttacctt
    11641 ttatggcctc aaatttatca tgagtcaaaa agatttttgc tcccgaaatt tttgcttttt
    11701 ctttggcaaa ttctaaaatt tcactattga tttcataatt ttttggcaat gcaacactaa
    11761 aatcaaatcc caaaatcgca gctgcaataa gccaagaatt acacatatta ttgctatcgc
    11821 ccacaaaggc taccttagct atatcatctt tcattttgcc acattctttt atagtgagta
    11881 aatcccctaa aacttgcgtt ggatgataaa gctcgcttag agcattgata actggtgctt
    11941 tagaatattt tgcaaattct actaaacttt catgcttgtt taccctcatc attacaaaat
    12001 caaccatcgc cccaataact ctagctgtgt cttttatagg ctcacctcgg cttaattgca
    12061 aatcattact gcttaaaaat aaagcctttc caccaagctc tgtgatagca agctcaaaag
    12121 ccattctagt tcttgtggag tttttttcaa aaatcattgc taaagtttta tcttgcaaaa
    12181 gctttttggg atttttttta agctcgcttg catgttctac aaggcttaaa atttcatatt
    12241 tagaaaagtc tcttagtgtt aaaaaatgtc tcatttttct ccttttaaca ttttagctaa
    12301 ttctttagcg tgataagtga taattagctt tgcacccgct cttttaaaag ctatcattgt
    12361 ctcatataaa actttttcat aatcaatcac tcctgcacga cccgctgctt ttagcatggc
    12421 atactcacca cttacattat aaacacacaa aggcaaatta gaatgaagtg aaatttcttt
    12481 cactacatca agataagcta aagcgggttt taccattaaa atatccgctc cttgtgcttc
    12541 atcttccaag ctttcttcta aggcttcttt tccatttgca aaatccattt gatagctttt
    12601 tctatctcca taacttggcg ttgaatccgc tacatcacga aacggcccat aataacttga
    12661 agcaaattta gtagaatatg ccattatagg caaattttca aaaccttcct catctaaggc
    12721 tttgcgtaaa gtttctataa taccatccat catcccgcta ggtgctatca tatcaacccc
    12781 cgctcttgca tggactaagg cttgcttggc tgaaatttct aaagttgcgt cattatctac
    12841 acttttggtt ttaggatcaa ttatcccaca atgcccatga tcagtatatt cacaaaagca
    12901 aagatcgctg ataacaaaaa gatttggaaa ttcttttttt atctctctta tacttcttgc
    12961 aataagtccc tcatcgtcca ttgcatcact tccgcagcta tcttttttat cattttcaag
    13021 aacaccaaaa agaataatcg cttttatacc cagctcgctt atgattttac attcttttaa
    13081 aatttcatct aaactcattt gaaatacatc aggcatagat gaaatttctt ttttaattcc
    13141 tttaccattt acaacaaaaa gaggataaat aaaatcatta atactaagag tgtgttctct
    13201 taccatagcc cttaaactct cattaagtct aagtctgcgg aatcttttaa acattttttg
    13261 tccttttttt gctacaatgt tatcatattt ttgctacaat gttatcataa ttttgattat
    13321 aaagagtagt aaatggatat aaaaatttca gaaattgcaa atctacctag caaatggggt
    13381 agttttcaaa ttcaaagctt caaagaagga gaaaaagaac atttatgtat atttaaaaac
    13441 actccacaag atatcctaaa tttaagaatt cattcagaat gtttaacagg ggatgcctta
    13501 ggaagcttaa aatgcgattg cggagaacaa cttgaatttt cattaaaata tatagaaaaa
    13561 catggtggaa tggtgattta cctaaggcaa gaaggacgtg gaattggact ttttaataaa
    13621 gtcaatgctt atgctttgca agataagggt tttgatacca taaaagctaa tcaccaacta
    13681 ggctttaagg ctgatgagag aacttatgaa atagtagaat ttatactaaa acattataaa
    13741 atttctaagg ttaatttact tactaacaat ccacaaaaaa ttcactctat acaagataaa
    13801 atcatggcgc gcgttcctat acttataaat cctaaccgct tcaatgcaaa ttatttagag
    13861 gtaaaacaaa atcaaatggg gcatttactt tgaatttgga ttttttaaat ttaattttat
    13921 ctgattttaa tgaagaagat tttagggcta agcttaaaat ctataaagaa attctaaata
    13981 aatttaaccg cattcataat ctcactcaat taaaaaatat agatgaaaat attttagata
    14041 gcattgaaat tcttaaatat tttgattttt caaaggcaaa aaatatagtc gatatcggta
    14101 gcggtgctgg ctttcctgct atttttttag cctttatttt accaagcaat tttcatcttt
    14161 ttgaacccaa tccaaaaaaa gctgcatttt taagaagtat caaaatagaa tgtaacttaa
    14221 caaatttaac cgtatacaaa gaaaaagttg aaaattataa aagctcattt aaagccgata
    14281 ttatcacttc aagagctctt atggatgtaa aacccttaat aaaactttgt ttaaatataa
    14341 gtgatcaaaa aacaattttt atactttgga aaggaagtga aatttttgat gaagtagaag
    14401 ggttgaaaga ttatgatatt tttgaaaatg gcttaagaag gtattgcgtt ttaaaaaata
    14461 ctcaaagtgg tatgaatacc actttgtaat tattgtacta catcagcgct aaaaacgata
    14521 tctactaaag gccatgaaat tccgccatgt cctggtgcaa catcactcaa agcttttaga
    14581 gcttgagagc tatttttaaa agcatgtaaa tcaagctgtc ctttggctac aaatttattg
    14641 ttttctatag tatagcttaa aggcacaagc gtgctctttt tatctatagt tactctagct
    14701 gagatcacgc ctttattctc acctgtaact acatctttaa aaaccacttt aatatctgaa
    14761 tttccaagca aactagggaa aaatacttta gcaagattat ctgtaatgat ttcattgccc
    14821 tcacccataa aaacgctgct tggatttacc actgctctag caccttttaa atagcttgcc
    14881 aaagtactag tatttttaga aaatttatat ttaacatctt taaattctcc acccactcct
    14941 accatatctt cggtcttata tccttcaaaa ctaactttca agctatcttg attgaaagaa
    15001 acagcactca aacttgttgc aagtatcaaa gagactgcga tgccataaaa catttttttc
    15061 atttttttat ccttttttaa taaaattttg atttgcgtga gaattatagc atatttttat
    15121 aaaaaaaata attttttcta aatagtaatt tttattacca aagtatacct cgaaaaaata
    15181 gggtcagaaa atatcctcca aaaaccaaaa ccaatcccaa aacaaaagct aaaccaaaaa
    15241 ctcttgagcc actttttaag aattttttaa agtcgatttg aagtcctaaa gcagccatag
    15301 caaaaacaat acaaagagta caaagtaatt ttccaaaaga tataatatca cttgtagaaa
    15361 ttccaagaaa attttcccta cttgccaaat aagtatttat aacaatcact cctaaaaaaa
    15421 taaatgcaaa ataaggaata cttatatttt tttctgtttt ttccttactt gaatgctgat
    15481 ttttagcaaa aaaataagtt ataatcaata aaaatggcac aagcaaaatc actctcatca
    15541 tctttataat aatggcaata tttgaagcac tttgatcaaa atttgccata tctttcgcca
    15601 tttcagcagc tcctacaaca ttggctacct catgtaaagt tgcacccata aatataccca
    15661 tagcatgttg attaaaataa ggaaaaagat ctaaagaaaa aactatggga tataaaaaca
    15721 taaaaacaag cccaaaaatc accactgtac caacggctag aattccttta aagggatcac
    15781 tttttaagct tgattctaag gctaaaacag ctgctgctcc acaaatagca cttccagcac
    15841 ctactagcat ggaagtttct ttatctagtt taaaaacctt tacacccaca atcaaagcta
    15901 aaataaaaat aaaaaatata actatcatag aaagtataaa gccttttaat cccacactta
    15961 aaagttcggt tagagtaata ttaaaaccat ataagataat acccaatctt aaaagttttt
    16021 tagcactaaa gtgcactcct gcttgtaaat gatgttggta tttaaaaaac caaggtgaaa
    16081 gcaatgctcc tataataata gcaaaagcag ctgctgctaa atgggttgta tctttaatac
    16141 tttgaacact tgaaagatac attgcaaaaa acactataga ggctgtaaaa atcaaacctt
    16201 taaaatttga aatcagtata tttttataat gctctatttt ttttatcata tgttttctcc
    16261 tttaatttgc aattataaaa ttacaattaa atattttctt gccattatag tcatttttat
    16321 attataataa aaatatatta ttttaatttt tataataaat ttttttaatc aaaaaagata
    16381 gaaagaactt caatgaaaat caaagatatg gaaatttttt tagatctttt aaatactcaa
    16441 agtcctacaa ataccgccaa taatttttcc atcacacaac ctaatgtttc catcattatt
    16501 aaaaatttag agcaggactt aggcggagca ttgtttgaaa gactaggaaa aaagctttta
    16561 cctactccaa aagctttata tttgggtaaa atttggctaa aacttgtgca agattattac
    16621 aaaagcttag aagaacttaa tgatgaaaat accctcttag gagaaatcaa gatcgctgct
    16681 actcaaagca tagctgaaca ctttcttgct cctattttat ttgattttaa atctaaattt
    16741 agcaatgtta aaatacattt tcaaactcaa aattcaaaag aatgtttaaa tttattaaaa
    16801 aatggagata tagaatttgc cattgttgaa gcagaactta atcctacttt aatcgatcac
    16861 gaagggttaa aaatggaatt ttggcaaaaa gatgaacttg tagttgctag tagtaataaa
    16921 aatttaagcc aaaaagaatt ttatatcgat gaattactta aacaaaaatg gattttgcgt
    16981 gaaacaggct cagggcttag agataaattt ctaaacgaaa taggcgatgt ttccaaaaaa
    17041 cttaaattct ttttagagct cgatagaatg cctgctatta aagaactcgt tatccaaaaa
    17101 aatgctattt ctattttttc taaaaaaagt atagaaaaag aattaaaaaa ttcaatttta
    17161 tatgaggtaa aattaaaaaa tattaatctt tggcgtaatt tttatatctt aaaaagaaaa
    17221 aattataatt ttaacagggc tttggaaaaa tttgaaaaaa tatttaaaca ataagaacta
    17281 aattttatac aaatattaag caaaatttag ataaaatcca aggcttatat aaaagttaag
    17341 gaagttcaat gaatgccaaa acccaagata tggaacttga agagctcttt aaagaaaacg
    17401 aaaaagatta tatcacttac gaaaaattag taaaatactt cagcaagcaa cctaattcag
    17461 ccactgccaa aaaagtccaa actttaatga aaaagtataa agtacagtta ttttcggctg
    17521 ctgaaattgc acaaatgaaa aatatagaag atgcaaaaag attgcaagaa gaaaaacaaa
    17581 aattgcaaga tactagtctt gagaatgaat ttgatttagc caatgaaaat gatttgctag
    17641 aatggagcag atcggattct cctgtgcgta tgtatctaag agaaatgggg caaattgcac
    17701 ttttaaataa agatgaagaa atcgaaattt ccaaaaaaat tgaacttggt gaagatatta
    17761 tcatagatgc tttttgttcc gtgccttatt tgattgactt tattttagat tatcgtgaac
    17821 cactgatcaa tagagaaaga agagtaaaag aacttttcaa aagctttgat gatgaagaaa
    17881 aaaatgatga taagcttgat gaactagagg acgaggatga agaaaacgat gaagaattag
    17941 aaaatgaaga
//
LOCUS       DARAII010000021        17540 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.021, whole genome shotgun sequence.
ACCESSION   DARAII010000021 DARAII010000000
VERSION     DARAII010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17540
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.021"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..477
                     /locus_tag="SB143_000639"
     CDS             <1..477
                     /locus_tag="SB143_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEF9749197.1"
                     /translation="ECKLGIMPGFIFKKGCVGLISKSGTLTYEAANQVVQGGYGISTA
                     VGIGGDPIIGLAYKELLSEFEKDNETKAIVMIGEIGGSLEVEAAKFIKENISKPVVAF
                     IAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDSPALIGEEIQKILG"
     gene            492..803
                     /locus_tag="SB143_000640"
     CDS             492..803
                     /locus_tag="SB143_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEF9749198.1"
                     /translation="MSIAAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTPEAKDRAVAVKNNKYKKL
                     A"
     gene            812..1936
                     /locus_tag="SB143_000641"
     CDS             812..1936
                     /locus_tag="SB143_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEF9749199.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGVSVTIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASVAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIEIINRKKFTGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGAIVKKNMERLIGKIKNNQDNICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAINRLREEGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            1937..2782
                     /locus_tag="SB143_000642"
     CDS             1937..2782
                     /locus_tag="SB143_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEF9749200.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKSKFESMDFEERKDKFPTGVLYEDSTQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            2779..3336
                     /locus_tag="SB143_000643"
     CDS             2779..3336
                     /locus_tag="SB143_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEF9749201.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDILKETMLHMVP
                     AKTRDANSKAFDLGVKYAQETKAHS"
     gene            3465..3728
                     /locus_tag="SB143_000644"
     CDS             3465..3728
                     /locus_tag="SB143_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEF9749202.1"
                     /translation="MDIFDEMFNKTPKEKFIEIIQNGNLGALEKVFENFFADHIAMIE
                     LLEKQGFNEMDMKSFILENGDFIQERQNDLFIELGAKILGHEG"
     gene            3728..4258
                     /locus_tag="SB143_000645"
     CDS             3728..4258
                     /locus_tag="SB143_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEF9749203.1"
                     /translation="MSIRLLVFFTLMANCIVLNAAPVFDYTYKFTLKKDERASVEIKE
                     LGYDNGVQNFDFYWTLFDNTNIVVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYKNPH
                     IDRARLILEFSEYKKGEAIFTVYIEDKDSRLEVKFLDPRKMQLTNPPQNNQVVPMIDF
                     NEPQVEPLIQRENTTN"
     gene            4275..5168
                     /locus_tag="SB143_000646"
     CDS             4275..5168
                     /locus_tag="SB143_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEF9749204.1"
                     /translation="MQPIDDLIKQYLQELDYEPILTMLANTKSGKKLRSKLLLAIAGE
                     NANSYKICAAIELIHLASLLHDDIIDESKLRRGAKSVNAEFGTKNALMLGDILYSKAF
                     YELSQLDACFASIISDAVVKLAVGELMDVELSKSFNADKDKYLKMIYNKTAVLIEASA
                     RCGAILANLDEKAFGEYGKNLGLAFQMIDDILDIKGDEKTLGKPAMNDFKEGKTTLPY
                     IYLYENLNNEDRAQLKNLFQKDLNNDEKIWIQTKFEETKALNKAILEAKEYAHQAALA
                     IKDFSNEKLQDIIQAMIDRDF"
     gene            5168..6463
                     /locus_tag="SB143_000647"
     CDS             5168..6463
                     /locus_tag="SB143_000647"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEF9749205.1"
                     /translation="MYYCISFTHKNTDLSLRERLSFSDEAKKNEFLRLLSIHENIEEC
                     LVISTCNRVEIVAYVKEACAEYIIKSLALLCNVDKESLVQKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFALKNNFCAVHLSRAIHSAFKCAAKVRNETQISKNP
                     ISVASVAVAKAKELLPLDGKSAIVIGAGEMGELAAKHLITAGARVIVLNRDMEKARIL
                     CERLGVLSECDSLNNLKKYLDEYELFFSATNAPNAIIANSLIDEVSHKRYFFDIAVPR
                     DIDISENEKISVFAVDDLEVVVRKNLALREQEARMAYGIIGRETAEFFRYLNDLALTP
                     IIKAIRLQAKECANKQLQIALDKGYLKHSDEEEARKLIHQVFKAFLHTPTMNLKHLQG
                     KMQSDTVINAMRYIFDLENNLEGLNQYTCEFNMENNDEI"
     gene            6450..8159
                     /locus_tag="SB143_000648"
     CDS             6450..8159
                     /locus_tag="SB143_000648"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEF9749206.1"
                     /translation="MMKFSKLYAPSLKEAPKDATLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIRTIVKEEMDKAGAQEVNLSFVTPATLWQESGRYNVFGKELLRFKDRKE
                     NDFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLTREFDLMYNTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAVRANKTCDEERPEANYASKFHTPDIKTIEALAQFFKINA
                     FYTIKAVVKKAIYENENKLVVFFIRGSDDLQEVKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSKPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFTLEIIISNIKDEKSLEFATKLYEDLSNAGIEVLL
                     DDRNERFGVKMNDFELMGFPYALVVGKGLEKDELEFIDRKTLEKKIISSKEVFDFIKK
                     SVE"
     gene            8156..8542
                     /locus_tag="SB143_000649"
     CDS             8156..8542
                     /locus_tag="SB143_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="integral memnbrane protein"
                     /protein_id="HEF9749207.1"
                     /translation="MNYKLSLSPLFLLELVASILFIVFFGLGNFLIFILASMIFGVIL
                     LGIFWKNMLEFRISGFKDMLTQFAFVMAAFLLIFPGIVTSIFGFFVLCFGLIFNFAKP
                     RYKRNYRQNNTSDEEIIDVEIIEERK"
     gene            8539..9465
                     /gene="hemC"
                     /locus_tag="SB143_000650"
     CDS             8539..9465
                     /gene="hemC"
                     /locus_tag="SB143_000650"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEF9749208.1"
                     /translation="MKELVIATRKSQLALWQSEFVADFLNKTHGIAVRLEGFKTKGDV
                     LLDSPLAKIGGKGLFTKELEESMLRNEAHLAVHSLKDVPSFFPQGLILAAVSKREQSN
                     DAMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLEIISLRGNVNSRIEKLKNGD
                     FDAIILAMAGIKRLDLDKQVNFVYTFSKDELIPAASQGALGIESTDDEKILEFLKCLN
                     DDNALIETTIEREFIATLEGGCQVPIGINAELLNDEICVRAILGLPDGSEILKEKRMI
                     KKSDFKGFGESLAKEFIAKGAKEILKKAESMI"
     gene            9462..11267
                     /locus_tag="SB143_000651"
     CDS             9462..11267
                     /locus_tag="SB143_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEF9749209.1"
                     /translation="MKDFIKILKDNDLLKVYEEPVDVDLEIAHLAYIEAKKGENGKAL
                     LFKNPIDKQNNKQYKFPVLMNAFCNEKALNLAFGRDYKEVADEISKLTKLHIPTSFKA
                     KIDFFMNLLSLKNVPPKRLKADKALYDYELLNSLEELPILKTWEEDAGRFITMGQVYT
                     QNLDKTQNNLGMYRLQVSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKLTPCENGIFVPYDSDIVIEGYVDLEEFKV
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKEAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYKMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKKAPNLDDYDALIPYILNRFNTNKILISEGICDQLDHASPNSCFGGKAGLDACEEAM
                     VEELEILEDEKLLELFTTKIEPVNLKQFYKESKSPIVCILLDKKEKIEQSFEKLLEFK
                     KHFRILVFLDSNNKLENPYMLVWRVVNNIDAKRDIFIKADRVGVDASAKGLVEGYERV
                     WPKQTDCTKSVIEDLILRNILENNSELFSKFEILG"
     gene            11429..11800
                     /locus_tag="SB143_000652"
     CDS             11429..11800
                     /locus_tag="SB143_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlaG"
                     /protein_id="HEF9749210.1"
                     /translation="MEISKANGQLDAAFANLGQRASGVHQTYSDIQAGENKSQGGDDG
                     QKEQGLSEKLANITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSE
                     EAMRLAEYFKDVIGMIFDKES"
     gene            11802..13736
                     /gene="fliD"
                     /locus_tag="SB143_000653"
     CDS             11802..13736
                     /gene="fliD"
                     /locus_tag="SB143_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEF9749211.1"
                     /translation="MALGQLASLGFASNVLKQDIMDKMKKAEEKDKVEPYTKKVEENT
                     TKQKDLTEIKTKLLTFQTAVSSLADATAFAKRKVVGSITENPPASLTANSGVSLQSMK
                     VNVTQIAQKDVYQSKGLTNDSGYVNANLTKATDLTFFSNGKEYTVSVDKNTTYKDLAD
                     KINAASGGEIVAKIVNTGEKNTPYRLTLTSKETGEDHAISFYAGKKDGNGKYTESNES
                     KEIFKNLGWELDTTGGTIDPAKDKKGYGIKDNATDPLHIQKAQNAEFTLDGIKMIRSS
                     NTITDLGVGLTLTLNKTGEINFDVQQDNEAVTKTMQELVDAYNNLVSNLNAATDYNSE
                     TGTKGTLQGVTEVNSIRSSITSILFDSQSIDGTVEDKNGNKVKTKVMLSMQDFGLSLT
                     DSGSLSFDSSKFEKKVKENPDLTESFFSNITKYEDINHTGDLIKEGSLKQYVGTGTNN
                     GLEFKQGEFTIVYNNQSYDISKARDGSTFKLTGATEQEMLQNLATHINSLGIEGLSVK
                     VEAYDKNNQKGWELKIKGDGGSDFSIKGNKDFLKKFGLSETNITAKPVEGKGVFSKLK
                     STLQGMTGTKGSLTKYDESLTNDTKTLNKAKESAQKAIDTKYDSMANQWLQYESILNK
                     LNQQLNTVTNMINAANNSNN"
     gene            13748..14131
                     /gene="fliS"
                     /locus_tag="SB143_000654"
     CDS             13748..14131
                     /gene="fliS"
                     /locus_tag="SB143_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEF9749212.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFIKRTTAIFIELINTLDYEKGGEVAHYLSGLYTREIQLLSLANLENNEAR
                     IDEVINVTKGLLEAWREVHNNEAMA"
     gene            14115..14387
                     /locus_tag="SB143_000655"
     CDS             14115..14387
                     /locus_tag="SB143_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749213.1"
                     /translation="MKQWLSDFKLALIQEDVNKLESLLNALDLKKMLEDLARDFQNDE
                     LKDKLNDNLGQIKALLQEAVVLISAKKNSKACEIQKIQKALKYFKA"
     gene            complement(14375..14699)
                     /gene="rnpB"
                     /locus_tag="SB143_000656"
     ncRNA           complement(14375..14699)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="SB143_000656"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            14806..15375
                     /gene="efp"
                     /locus_tag="SB143_000657"
     CDS             14806..15375
                     /gene="efp"
                     /locus_tag="SB143_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEF9749214.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEEKTMQYLYDDGENCQFMDTESYEQVAISDEDVGE
                     AKKWMLDGMMVDVLFHNSKAIGVEVPQVVELKIVETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            complement(15537..16622)
                     /locus_tag="SB143_000658"
                     /pseudo
     CDS             complement(15537..16622)
                     /locus_tag="SB143_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788234.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
     gene            complement(16619..>17540)
                     /locus_tag="SB143_000659"
     CDS             complement(16619..>17540)
                     /locus_tag="SB143_000659"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEF9749215.1"
                     /translation="SIPIGLISVIYEARPSLSAEIIALMIKSSNACVLKGGSEAKFTN
                     SAIFDLVYKVLEEFNLQDCFAMFYERNEIMQILAFDDLVDVIIPRGSSNMIQEIASHT
                     KIPLIKQDKGLCHAFVDESANLNMALEIILNAKCQRVSVCNALETLLIHEKIAKDFIK
                     LLIPEFEKFKVKIHAHENILEHFKNSKLEISKADESTFDTEWLDYAISIKSVKDCDEA
                     IEHINQHSSLHSETIISNNALNIGKFQRLLRSSCIYVNASTRFSDGGEFGFGGEVGIS
                     TSKLHARGPMGVEDICTYKYLISGEGQIRK"
BASE COUNT         6233 a         2373 c         3449 g         5485 t
ORIGIN      
        1 gaatgcaaat taggcattat gccaggcttt atctttaaaa agggttgcgt agggcttatt
       61 tcaaaaagtg gaactttaac ttatgaagca gctaatcaag tagttcaagg tgggtatgga
      121 atttcaacag cagtaggcat tggtggagat cctatcatag gacttgctta taaagaactt
      181 ttaagtgaat ttgaaaaaga taacgaaaca aaagctattg ttatgatagg ggaaatcggc
      241 ggtagcttag aagtagaagc agcaaaattt attaaagaaa atattagcaa acctgtggta
      301 gcattcattg cgggagcgac tgcgccaaaa ggtaaaagaa tgggacatgc aggagctata
      361 gtaggtagtg ctgatgaaag tgctgcagct aaaaaagaag cattaaagtc ttatggaatt
      421 catgtagtgg attctccagc tttaatcggt gaggaaatac aaaaaatatt aggctaaaaa
      481 aggaaaaaga tatgagtata gcagctccaa aagatacccc tgtttgggta gatgagcata
      541 gatgtaaagc ttgcaatatc tgcgttagct attgccctgc aggggtttta gctatgcgcg
      601 atgatgttca tgcggttttg ggacaaatga tagaggttgt acatcctgag tcctgtatag
      661 gttgtactga gtgtgaaaca cattgtccag attttgctat tatggtggca aaaagagatg
      721 aatttaaatt tgccaaactg actccggaag ctaaagacag agccgtagca gtaaaaaata
      781 ataaatataa aaaattagca taggaaagac aatgagagaa gttatagcaa caggtaatgt
      841 tttgattgca aaagcagcaa ttgattgtgg atgtaaattt tttggaggtt atcctattac
      901 accaagttct gaaattgcac atgaattaag ccatatgctt cctgcaaatg atggaacttt
      961 tatacaaatg gaagatgaaa tttcgggtgt aagtgtgact attggtgctg ctatgagtgg
     1021 cgtaaaatca atgaccgcaa gtagtggtcc tggaatttcg cttaaagcag agcaaatcgg
     1081 tcttgctttt atcgctgaaa ttccacttgt tattgtaaat gttatgcgtg gtggtccttc
     1141 aacaggtctt ccaacaaggg tggctcaagg ggatttattt caagcaaaag cacctactca
     1201 tggggatttt gctagtgtgg ctatcgcacc agcgagttta gaagaagctt atacagaaac
     1261 cataagagcg tttaatttgg ctgaaaagta tatgactcct gtatttttac ttatggatga
     1321 aactgtaggg catatgaatg gtaaagcggt attgcctgat ttaaaagata tagaaattat
     1381 taatcgtaaa aaattcacag gcgataaaaa agattataaa ccttatgcag cgggcgaaaa
     1441 tgaacctgca acactcaatc cattttttac tggctatcgc tatcatgtaa ccggacttca
     1501 tcatggagat ataggttttc caacagaaga tggcgctata gttaagaaaa acatggaaag
     1561 acttataggt aaaattaaaa acaaccaaga taatatttgt acttatgaag aatatatgct
     1621 tgatgatgct gaatttttaa tcatagctta cggaagcgta agtcgttctg ctaaagaagc
     1681 tatcaatagg ctcagagaag agggtattaa ggtaggactt ttccgcccta tcacacttta
     1741 tcctgtagct gaaaagaaaa ttgctgaagt ggtaagcaaa tttaaaaagg taatggtaag
     1801 cgaattaaat atgggacagt atcttgaaga gattgaaaga gtaacttcgc gtcgcgattt
     1861 tattagtttg caccgtgcaa atggtcgtcc tatcactcca agtgaaatta ttgctaaggt
     1921 aaaggagaat atataaatgg cttttaatta tgatgaatat ctaagagtag ataaaatgcc
     1981 tactcaatgg tgttggggat gtggcgatgg tgttgtttta aaatgtatta tccgcgcgat
     2041 agaaaaactt ggttggaata tggatgatgt ttgtcttgtt tcgggtatag gttgtagtgg
     2101 cagaatgagt tcttatgtaa attgcaatac cgtgcacact actcatggta gagctattgc
     2161 ttatgcaaca ggcataaaac tagccaatcc tagcaaacat gttattgtag taagtggcga
     2221 tggtgatact ttagcaattg gtggaaatca tactatacat ggatgtcgta gaaatataga
     2281 tttaactcat attgtaatca acaattttat ttatgggctt actaattctc aaacttctcc
     2341 aactactcca aaaggttttt atacagtaac tgcacaattt ggaaatatcg atccaaattt
     2401 tgatgcttgc gaattaacta aagccgctgg agcttctttc gtggcaagag gaaatgttat
     2461 tgaggcaaat aaattagaaa atttaattta taaagcttta gcacacaaag gttatagctt
     2521 tgttgatgtt ttctcaaatt gtcatattaa cctaggtaga aaaaataaaa tgggtgaagc
     2581 agtggctatg cttgattgga ttaaaaatcg tgttgtggat aagtctaaat ttgaaagtat
     2641 ggattttgaa gaaagaaaag ataaattccc aacaggtgtt ttatatgaag atagcacgca
     2701 gccagaatat tgtcatgctt atgaagaagt gcgtcgtgca gccaaagaaa aaagaatggt
     2761 tgatttagga gccttaaaat gaaatatcaa ttaagatttg gtggtgaggg tggtcaaggt
     2821 gttatcaccg caggagaaat tttagctgaa gcagcgatta aagaaggtcg tcaagccttt
     2881 aaagcttcaa cttatacttc ccaagtgcgt ggaggtccga ctaaggttga tattatcatc
     2941 gatgataaag aaattctttt tccttatgcg gtagagggcg aagtagactt tatgctttca
     3001 actgcagata agggttataa aggttttcgt ggcggagtaa aagagggtgg catcatagtt
     3061 gtagaaccaa atttggttca tcctgaaagc gaagattata aaaaatggca aatttttgaa
     3121 attcctatca ttactatagc taaagatgag gtaggtaatg tagctactca atcagttgtt
     3181 gcactagcca tagctgctta tatgagtaaa tgtattgatt tggatattct taaagaaacg
     3241 atgcttcata tggttccagc taaaacaaga gatgcaaatt ctaaagcttt tgatttgggt
     3301 gttaaatatg cacaagaaac caaagctcat tcttaaataa atttgggttt attcccaaat
     3361 ttattgcttc ttgaaataaa tttttaaact ttttcatttt ttaatttagc tacttttaac
     3421 gattaaaatt ttataatcaa aaacatattt attaaggaaa ttcaatggat atttttgacg
     3481 aaatgtttaa taaaactcct aaggaaaaat ttatagaaat tatacaaaat ggaaatttag
     3541 gagctttaga aaaagtattt gaaaactttt ttgctgatca tattgctatg atcgagcttt
     3601 tagaaaaaca aggttttaat gaaatggata tgaaaagctt tatacttgaa aatggagatt
     3661 ttattcaaga aaggcaaaac gatcttttta tagaattagg tgctaaaatt ttaggacatg
     3721 agggctaatg agcattaggc ttttggtttt ttttactttg atggcaaatt gcattgtttt
     3781 aaatgctgct cctgtttttg attatacata taaatttaca cttaaaaaag acgagagagc
     3841 tagcgtggag attaaagagc ttggttatga taatggggtt caaaattttg atttttattg
     3901 gactttgttt gataatacca atatagtcgt tcattctaaa tttcgtaaat atccgcgtca
     3961 atttgtgatg agtttaagaa gaaatttgga ctgggtaacc caaactttaa ttcctgatta
     4021 taaaaatcca catattgata gagcaaggct tattttagaa tttagcgaat acaaaaaagg
     4081 tgaggcaatt tttactgtgt atatagaaga taaggattct agacttgaag tgaaatttct
     4141 tgatccaaga aaaatgcaat taacaaatcc acctcaaaat aatcaagtag tgcctatgat
     4201 agattttaat gagcctcaag tagaaccatt gatacaacga gaaaatacca caaactaaat
     4261 ttgaaggata tagggtgcag ccaatagatg atttgataaa acaatatttg caagagcttg
     4321 attatgaacc tattttaact atgcttgcta ataccaaatc aggcaaaaaa ttgcgttcaa
     4381 agctactttt agcaatcgca ggagaaaatg caaattctta taaaatttgt gccgcaatag
     4441 aacttataca tttagcaagt ttgttgcatg atgatatcat agatgaaagc aaattaagac
     4501 gtggtgcaaa gtctgttaat gccgaatttg gtacaaaaaa cgcccttatg cttggagata
     4561 ttttatattc aaaagctttt tatgaattga gccaactaga tgcttgtttt gcaagtatta
     4621 tttcagatgc ggttgttaag cttgctgtag gcgagcttat ggatgttgag cttagcaaaa
     4681 gttttaatgc ggataaagat aaatatctaa agatgattta taataaaacc gcagttttaa
     4741 tcgaagcaag tgcaaggtgt ggggctattt tggcaaattt agatgaaaaa gcttttggag
     4801 aatatggcaa aaatttaggt cttgcatttc aaatgattga tgatatttta gacattaagg
     4861 gcgatgaaaa aacccttgga aaacctgcta tgaatgattt taaagagggt aaaaccactt
     4921 tgccttatat ttatctttat gaaaatttaa ataatgagga tagggctcaa ttaaagaatt
     4981 tatttcaaaa agatttaaac aatgatgaaa aaatttggat acaaaccaaa tttgaagaaa
     5041 caaaagcttt aaataaagct atattggagg ctaaagaata tgcccaccaa gcagcactag
     5101 ctataaaaga tttttccaat gaaaaacttc aagatataat tcaagctatg atagataggg
     5161 atttttaatg tattattgca tatcttttac tcataaaaat acagatcttt ctttaaggga
     5221 gagattgagt ttttcagatg aagcaaaaaa aaacgagttt ttgagattgc taagcattca
     5281 tgaaaatatt gaagaatgtt tggttataag cacttgtaat cgtgtagaaa tagtagctta
     5341 tgtaaaagaa gcttgtgcag aatatattat taaatcctta gctttattat gcaatgtaga
     5401 taaagaaagc ttagttcaaa aagctgatat ttttgaagat agcggagcta ttcatcatct
     5461 tttttcggtt gcaagctcac ttgatagttt ggttgttgga gaaacacaaa tcgcagggca
     5521 attaaaagat gcttttgctt ttgctttaaa aaataatttt tgcgcggtac atctttcaag
     5581 ggcaattcac agtgcattta aatgcgcagc taaggttcgt aatgaaaccc aaatttcaaa
     5641 aaatcctatt tcagtcgcta gtgtagcagt agctaaggct aaagaacttt tgcctttaga
     5701 tggaaaaagt gctatagtta taggtgcggg tgagatggga gagcttgcag ccaagcattt
     5761 aatcactgct ggagctagag ttatagtgtt aaacagggat atggaaaagg ctcgtatcct
     5821 ttgtgagaga ttgggtgttt taagcgagtg cgatagctta aataatttaa aaaaatatct
     5881 tgatgagtat gaactttttt tctcagctac caatgcccca aatgctatta ttgcaaattc
     5941 tttaatcgat gaggtctctc ataagagata tttttttgat attgctgtgc cacgagatat
     6001 tgatattagt gaaaatgaaa aaatatcagt ttttgcggtc gatgatcttg aagttgttgt
     6061 gcgaaaaaat ttagccttaa gagaacaaga agcgcgtatg gcgtatggta tcatcgggcg
     6121 tgagacagca gaatttttta gatatttaaa tgatttagct ttaactccta ttataaaagc
     6181 gattcgcttg caagcaaaag aatgtgccaa caaacagctt caaatcgctt tagataaagg
     6241 atatttaaaa cattctgatg aagaagaggc aagaaaatta atccatcaag tttttaaagc
     6301 tttcttgcat actccaacta tgaatttgaa acatttgcaa ggtaaaatgc aaagtgatac
     6361 agtgattaat gctatgcgtt atatttttga tttggaaaat aatcttgaag gtttaaatca
     6421 atacacatgc gaatttaata tggagaataa tgatgaaatt tagtaaatta tatgcaccaa
     6481 gtcttaaaga ggctccaaaa gatgcgactt taccgagcca tattttttta acacgcgctg
     6541 gctttgttga gcaaattggt agtgggcttt ataatttttt acctttggga aaaagagtat
     6601 tggataaaat tcgcactatt gttaaggaag aaatggataa agcaggagca caagaggtaa
     6661 atttaagctt tgtgactcca gcgactttat ggcaagaaag cgggcgttat aatgtttttg
     6721 gtaaagagct tttgcgtttt aaagatagaa aagaaaatga ttttgtttta ggcccaacgc
     6781 atgaagaggc tatgctttct ttggtaaaaa ataaaatcac atcttataaa caacttcctt
     6841 tgcatttata tcaaataggg cttaaatttc gtgatgaagc aagaccaaga tttgggcttt
     6901 taagatgtcg tgaattttta atgaaagatg gttatagttt tcatgcaaat gaagaagatt
     6961 taacgcgtga atttgatttg atgtataaca cttattccca aatcttgcaa agaatggggc
     7021 ttgattttag agcagttgaa gctgatagtg gggctattgg tggaagtggt tctaaggaat
     7081 ttatggtttt ggcaaaaaat ggtgaggatg atattttaat ttgtgaaaat tgtgattatg
     7141 ctgcaaatgt tgaagctgca gttagagcca ataaaacttg tgatgaagag cgtcctgaag
     7201 caaattatgc aagtaaattt cacactccag atattaaaac catagaagct ttagcgcaat
     7261 tttttaaaat taatgctttt tatactatca aggctgtggt gaaaaaagct atttatgaaa
     7321 atgaaaataa attagttgtg ttttttataa gaggaagtga tgatttgcaa gaggttaagg
     7381 ctcaaaatgc ttgcagtgcc cttgaactag tcgatgcgag cgaagaagaa ttggaaaaag
     7441 ctggcttagt agctggtttt ataggttttg tgggattaaa agatatagat ttttatatag
     7501 attttgagct tgaaaacgaa aagcaaatga ttatgggtgc gaatgaaaaa gattatcatt
     7561 taatcggtat tgatgttgta aatttaaata aagatcgttt taaagatttg attgaagtta
     7621 aagaagggga ttgctgtgtt aaatgtggag caaaattaaa acaaagtaaa ggtatagaag
     7681 taggacatat ttttaaatta gggcaaaaat attctaaggc tatgaatgca aatttcttag
     7741 atgaaaatgg caaaagcaag cctttttaca tgggatgtta tggtataggg gtttcgcgtt
     7801 tacttgcagt agcaattgag gcaaatcatg atgaaaaggg ttgtatttgg aataaaacct
     7861 tagctccttt tacgcttgaa attataattt caaatatcaa agatgagaag tctttggaat
     7921 ttgctaccaa gctttatgag gatttaagca atgcaggtat tgaagtttta cttgatgata
     7981 gaaatgagcg ttttggtgtt aagatgaatg attttgagct tatgggcttt ccttatgctt
     8041 tagttgtagg caagggctta gaaaaagatg agttagaatt tatagataga aaaacactag
     8101 agaaaaaaat catatcaagt aaagaagtat ttgattttat taaaaagagt gtagaatgaa
     8161 ttacaagcta agccttagtc cgcttttttt actagaactt gttgcaagta ttttatttat
     8221 tgtatttttt ggtttgggaa attttttaat ttttatttta gctagtatga tttttggagt
     8281 aattttgctc ggaatttttt ggaaaaatat gcttgaattt cgtataagcg gttttaaaga
     8341 tatgttgact caatttgctt ttgtaatggc ggcttttttg cttatctttc caggaatagt
     8401 aacgagtatt tttggatttt ttgttttgtg ttttggtttg atttttaatt ttgctaagcc
     8461 tagatataaa agaaactaca gacaaaataa cacttctgat gaagaaatta tcgatgttga
     8521 aattatagag gagagaaaat gaaagagctt gttatagcta caagaaagag tcaattagct
     8581 ctttggcaaa gtgaatttgt agcagatttt ttaaataaaa ctcatggcat agcagttcgc
     8641 ttagaaggct ttaaaaccaa aggagatgtt ttgttagata gcccactagc aaaaataggt
     8701 ggtaaaggac tttttactaa agaactagaa gaaagtatgc taagaaatga agcgcattta
     8761 gctgtacata gtttaaaaga tgtaccgagc ttttttccac aaggtttgat tttggctgca
     8821 gttagcaaaa gagaacaaag taatgatgcg atgttgagtc aaaattataa agattttctt
     8881 tctttgccaa aaggcgcaaa gataggcact acaagcctta gacgcaaaat gcaactttta
     8941 ttattaagac ctgatttgga aatcatttcc ttacgtggca atgtgaattc tcgtatagaa
     9001 aaattaaaaa atggggattt tgatgcgatt atcttagcta tggcaggcat taagcgtttg
     9061 gatttagaca aacaagtgaa ttttgtttat acatttagca aagatgagct gatcccagca
     9121 gcatctcaag gggctttggg tatagagagt acagatgatg aaaaaatttt agaattttta
     9181 aagtgtttaa atgatgataa tgctttgata gaaactacca tagaaagaga atttatcgct
     9241 actttagaag gaggatgtca agtgcctatt ggtattaatg cagaacttct aaatgatgag
     9301 atttgtgtgc gtgccatact tggtttgcct gatggtagtg aaattttaaa agaaaaaaga
     9361 atgatcaaaa aaagtgattt taaaggcttt ggcgaaagtt tagcgaaaga atttatcgcc
     9421 aagggggcta aagaaatttt gaaaaaagct gaaagtatga tatgaaagat tttattaaaa
     9481 ttctaaaaga caatgattta ctaaaagtgt atgaagaacc tgtagatgta gatcttgaaa
     9541 tcgctcattt agcctatata gaagctaaaa aaggtgaaaa tggcaaggcc ttgcttttta
     9601 aaaatcccat agataaacaa aacaataaac aatataaatt tcctgtttta atgaatgctt
     9661 tttgtaatga aaaagcatta aatttggctt ttggacgaga ttataaagag gtagctgatg
     9721 aaatttcaaa gctaaccaaa cttcatattc ctactagttt taaagcaaaa atagattttt
     9781 ttatgaattt attaagtctt aaaaatgtcc cacctaaaag attaaaagca gataaagctt
     9841 tgtatgatta tgagctttta aattctcttg aagaacttcc tatacttaag acttgggaag
     9901 aagatgcggg tagatttatt actatggggc aagtttatac acaaaattta gacaaaaccc
     9961 aaaacaatct tggcatgtat cgtttacaag ttagcgataa aaatgagctt ttaatgcatt
    10021 ggcaaattca taaagatggg gcaaattttt atcatgagta taaaaatgct ggctttaaaa
    10081 aaatgcctgt aagtatagct ataggcggag atcctcttta tatttggtgc tctcaagcac
    10141 ctttacctaa gggaattttt gaacttttgc tttatggttt tattaaaaaa actccagcta
    10201 agctgacacc ttgtgaaaat ggtattttcg tgccttatga tagcgatata gtgatcgaag
    10261 gctacgtgga tttagaagag tttaaagtcg aaggaccttt tggcgatcat acgggttttt
    10321 atacccctgc agagcttttt cctgtgatga aggtagaaaa aatttatgct aaaaaagaag
    10381 ccatctatca agcaactgtt gtgggaaaac cgcctttaga agataagatt atgggacttg
    10441 ggactgaaag aatattttta cctcttttgc aaacttcagt tcctgattta atcgattata
    10501 aaatgcccga aaatggggtt tttcataatc ttatcttggc aaaaattgat gcaaaatatc
    10561 ccgctcatgc acagcaaatt atgcatgctt tttggggagt ggggcaaatg agctttgtta
    10621 aacatgctat ttttgtagat aaaaaagctc caaatttgga tgattatgat gcattaatac
    10681 cttatatttt aaatcgtttt aatacaaata aaattttaat ttctgaagga atttgtgatc
    10741 aattagatca tgcttcgcct aattcttgct ttggaggaaa agcaggactt gatgcttgtg
    10801 aagaagccat ggtagaagag cttgaaattt tagaagatga aaaattatta gaacttttta
    10861 caaccaaaat agagcctgtt aatttaaaac aattttacaa agaaagcaaa agccctatag
    10921 tttgtatttt gctagataaa aaagaaaaaa tagagcaaag ctttgaaaaa cttttggaat
    10981 ttaaaaaaca ttttagaatt ttagtatttt tagattccaa taacaaactt gaaaatcctt
    11041 atatgcttgt atggcgtgtg gtaaacaata tagacgctaa aagagatatt tttatcaaag
    11101 ctgatagagt aggtgtcgat gctagtgcca agggcttagt agagggttat gaaagagttt
    11161 ggcctaagca aactgattgt actaaaagcg tgattgagga tttgatttta agaaatattt
    11221 tggaaaataa ctcagaactt ttttcaaaat ttgaaattct aggttagttc tatcttaaat
    11281 tcagcttttt aataactctt ggtacacttt ttgcttgtta tttttttata atgaaaaata
    11341 aatttttctt tataaagtat tcataaattt ataattttgt cgatatagcc tttaaatagc
    11401 aatattaaat tttaaaaagg attttaaaat ggaaatatca aaggcaaatg gacagttaga
    11461 tgcagctttt gcgaatttag gtcaaagagc aagtggagtg catcaaactt attcagatat
    11521 tcaagctgga gaaaataaaa gccaaggagg cgatgatgga caaaaagaac aaggtttgag
    11581 tgaaaagtta gctaatatta caaaaaaact aaatgagcaa atggactctt tagataccaa
    11641 tgttcgcttt ggttatagcg ataaaatcgg ctctatgtat attagcgtaa cggaaaaaag
    11701 cacaggaaga gaaatccgcc aaattcctag cgaagaggct atgcgtttag ctgagtattt
    11761 taaagatgtg ataggaatga tattcgataa ggagagttaa gatggcatta ggacaattag
    11821 caagtttggg ttttgcgtca aatgttttaa agcaagatat tatggataaa atgaaaaaag
    11881 cagaagagaa ggataaagtt gagccttata caaaaaaagt tgaggaaaac acaaccaagc
    11941 aaaaggattt gactgaaatc aaaaccaaat tgcttacctt tcaaaccgct gtttcatcct
    12001 tggcagatgc cacagccttt gctaaaagaa aagttgtagg tagtattacc gaaaacccac
    12061 ctgcgagttt gactgcgaac agcggggtgt ccttgcaaag tatgaaggtc aatgtaactc
    12121 aaatcgctca aaaagatgtg tatcaaagca agggacttac aaacgattct ggttatgtca
    12181 atgcaaattt aacaaaggct acggatttga cctttttttc taatggcaaa gaatataccg
    12241 taagtgtaga taaaaacacg acttataagg atttagctga taagattaat gcggctagtg
    12301 ggggtgaaat agttgcaaag atagttaata caggcgaaaa aaatactcct tatcgtctga
    12361 ctcttactag caaggaaaca ggcgaagacc acgctataag cttttacgcg ggtaagaagg
    12421 atggtaatgg taaatatact gagagcaatg aatctaaaga aatttttaaa aatcttggtt
    12481 gggagttaga tactactgga ggcacaattg acccagctaa agataaaaaa ggctatggga
    12541 ttaaagataa cgccacagac cctttgcata tacaaaaagc acaaaatgcc gaatttactc
    12601 ttgatggtat taaaatgatt cgttcaagca ataccattac agaccttggc gtaggactta
    12661 ctttaacctt aaataaaaca ggggagatta atttcgatgt ccagcaagac aatgaagctg
    12721 taactaaaac tatgcaagag cttgtggatg cttataataa tttagtaagc aatcttaatg
    12781 ccgcaacgga ttataactca gaaactggca ctaaaggaac tttgcagggt gtaacagaag
    12841 taaattccat acgctctagt ataacttcta ttttgtttga ctctcaaagt atagatggaa
    12901 cggttgaaga taaaaacggg aataaagtaa aaactaaggt tatgctttct atgcaggatt
    12961 ttggcttgag tttgacagac tcagggagtt taagctttga ttcttcgaaa tttgaaaaaa
    13021 aggtaaaaga aaaccctgac cttacagaga gctttttctc aaatattacc aaatatgaag
    13081 acattaatca tactggggat ttgattaaag aaggaagctt gaagcaatat gtaggcaccg
    13141 gaacaaataa tggtttagaa tttaagcagg gcgaatttac tatagtttat aataatcaaa
    13201 gttatgatat atcaaaagca cgcgatggaa gcacctttaa gcttacaggt gcaacagagc
    13261 aagaaatgct tcaaaattta gccactcata tcaatagttt gggtatagaa ggtttaagcg
    13321 ttaaggttga agcctatgat aagaacaatc aaaaaggctg ggagcttaaa attaaaggcg
    13381 atggtgggtc tgatttttct atcaagggca ataaagattt ccttaaaaaa tttggtctta
    13441 gcgaaaccaa tatcacagct aaacctgtgg aaggtaaggg cgttttttct aagcttaaat
    13501 ccaccttgca agggatgaca ggaacaaagg gttcgctcac taaatacgat gaaagtttaa
    13561 ctaatgacac aaagacttta aataaagcaa aagagagtgc ccaaaaagca atagacacta
    13621 aatatgattc tatggcgaat caatggttgc aatatgagag tattttaaat aaactcaatc
    13681 aacagctaaa tactgtaact aatatgatta atgcggcaaa caattctaat aattaaggat
    13741 aaaagagatg caaaataatt tagcctataa tgcttattct caaaatcaag tggggataga
    13801 gtctccgcaa aaacttattg aaatgcttta tgagggaatt ttgcgttttt gtgcaagagc
    13861 taaagtagcc ataagaaatg aagatataga acaaagagtg tattttataa aaagaaccac
    13921 ggctattttt atagagctca ttaatacttt agattatgaa aaaggcggag aagtggcaca
    13981 ttatttaagc gggctttata caagagaaat tcagctttta tctttggcaa atttggaaaa
    14041 taatgaagca aggattgatg aggttattaa tgtaactaaa ggcttgttag aagcttggag
    14101 agaagtgcat aacaatgaag caatggctta gtgattttaa acttgcgctc atacaagagg
    14161 atgttaataa gcttgaaagt ttgctaaatg cgcttgattt aaaaaaaatg cttgaagatc
    14221 ttgcaagaga ttttcaaaat gatgagctaa aagataaatt aaatgacaat ttaggacaaa
    14281 ttaaagcgct tttacaagaa gcagttgttt taataagtgc aaaaaagaat tctaaggctt
    14341 gtgaaattca aaaaattcaa aaagctttaa aatattttaa agcatagtga taagccgagt
    14401 tctgtctaga atgctcattt atctagtttt gttttcgcaa acaaaatcaa gcgaagggtt
    14461 aaaacaaaga ccttaaccat cccttcttgc tgcacattgg gtttacatag ccgaaattgt
    14521 tgccaaaatc gctggtaagc ttttacctca ccgtttcacc ttttccactt ttgtggtagt
    14581 tttctttctg ttgcactgtc ccttaggtcg ccctagccat ccgttagatg gaatgtttgt
    14641 cttttgcagc tcggactttc ctcttctttt tttaaagaag cgagcattta ctatgcttta
    14701 aaactaaatt ctaacaaaaa aatgcttatt ttattatcaa ttatattgtg atatcaaata
    14761 atttttgtta gaattataat ttatttttaa tataaaagga aaattatggc atcttattca
    14821 atgggtgatt taaaaaaagg gcttaaaatc gaaatcgatg gaattccttt taaaatagtt
    14881 gaatatcaac atgtaaaacc aggaaaaggt cctgcttttg tgcgtataaa aatcaaatct
    14941 tttattgatg gtaaggtttt agaaaaaact tttcacgcag gagataaatg cgaagctcca
    15001 aatttggaag aaaaaactat gcagtatctt tatgatgatg gagaaaattg tcaatttatg
    15061 gatacagaat cttatgagca agttgcaatc agtgatgaag atgtaggcga agcaaaaaaa
    15121 tggatgcttg atggtatgat ggtggatgta ctttttcaca acagcaaggc tattggcgtg
    15181 gaagttccac aagtggtaga acttaagatt gtagaaacag caccaaattt taaaggtgat
    15241 actcaaggat caaataaaaa accagctaca ttagaaacag gtgcagtagt gcaaattcct
    15301 tttcatgttt tagagggtga agttatacgc gttgatacgg tgcgtggaga atatatcgaa
    15361 agagctaata aataaaattt ttacgcgtac agattttttt aagcgcgttt gattttatcg
    15421 caaaaaataa atatcaaatt cagcaagttt gtataaatta agatatttat gtaagatttt
    15481 aaaatatatt atttcagctt ttaatgcatg caagcttaaa agctgaattt aaagaattat
    15541 ttacttgtca attttactct aaaaatgtat tttgcaatgt attcaaaata ttttcttaaa
    15601 taagccctat gaataacaaa acctcctaaa agtcctaaaa gactgcctat gataatatct
    15661 tgtaagcgag cgtgtattaa catatcaaca cttaagtttc caaaagaagc cgcctctgcc
    15721 aaataggtca cataaggtgt aagaaaaatg acagctaagg catagtttct aactactaaa
    15781 aattcaatta taaaggctaa aaacatcatt aaaaagataa attctaaagg agtgaattta
    15841 attcttaaaa gccactatgc aaataaaatt ccaactgttg ttccaagaat gcgttgaagt
    15901 tgttttatcc aaactgaatt taaattagtc ccttgtaaga taaccgttgt gctaactgcg
    15961 acccaataac ttcgatcaag ttctaaaaat gttcctaaaa acacagcaaa gccaacaaaa
    16021 aaagcaataa ttatagaatc cacaaagata acatcaaaac ctaaatttcc attttttaaa
    16081 acgggtttgg gtggagaatt tttaaaaata taaatgacag atacagagta taaaaaagca
    16141 gttatattag caatgatacc gcctatacag attagtccca ctagaaaaat ataatctttt
    16201 ggcggaaaag gaaaaaatga agctagtaaa caggaaaaaa cgaagaaaaa atatcctggc
    16261 gcgcctatat tataatagcg tatcaaaata gagctagcca tagctattaa gccaactaca
    16321 agcggagaga atgcaggaaa aaaatgcgtg caaagtccta ttaaaaaaga caaacacaaa
    16381 ccaaaagagc agcacattgt aacagccatt ctatgataca taggtgtatt ggttgtataa
    16441 acaaaagcca tgattcctat tatagcaatt aatcctaagt ccatacgatc ataatatgca
    16501 gcaatactaa gcgcaaatcc aactgctaag gcaaagaaaa aaggcatttg ccaaactctt
    16561 tcggttggat taagttgtat gatttcttta cattgttgtt ttaaaatttt tcttttactc
    16621 attttcttat ctgtccttct ccactgatta agtatttata ggtgcaaata tcttcaactc
    16681 ccataggacc tcttgcatga agtttgcttg tggaaattcc tacctctcca ccaaagccaa
    16741 attcaccccc atcactaaaa cgagtcgagg cattgacata aatacaagat gagcgtagaa
    16801 ggcgttgaaa tttgcctatg tttaaagcat tgtttgagat tatggtttca gagtgtaaag
    16861 agctgtgttg gttgatatgc tctatagcct catcacaatc ttttactgat tttatactga
    16921 tagcataatc aagccattct gtatcaaaag tgctttcatc agcctttgaa atttctaatt
    16981 ttgagttttt aaaatgttct aagatatttt catgtgcgtg aatttttacc ttaaattttt
    17041 caaattcagg gattaaaagc tttataaaat ctttagcaat tttttcatgg attaaaaggg
    17101 tttctagagc attacaaacg cttactcttt ggcattttgc attaaggatg atttctaaag
    17161 ccatatttaa atttgcactc tcatccacaa aagcatgaca taagccttta tcttgtttga
    17221 tgagtggaat ttttgtatga ctagcaattt cttgtatcat gtttgaactt ccacgaggga
    17281 tgatcacatc aaccaaatca tcaaaagcta aaatttgcat gatttcattt ctttcataaa
    17341 acatagcaaa acaatcttgc aaattaaact cttctaacac tttataaaca agatcaaata
    17401 tggccgaatt tgtaaatttt gcctcactgc ctcctttaag tacgcaagca ttggagcttt
    17461 ttatcattaa agcgatgatt tcagcactta ggcttggtct tgcttcataa atcacactga
    17521 ttaatcctat aggaatgctg
//
LOCUS       DARAII010000022        17517 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.022, whole genome shotgun sequence.
ACCESSION   DARAII010000022 DARAII010000000
VERSION     DARAII010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17517
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.022"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1116
                     /gene="hslU"
                     /locus_tag="SB143_000660"
     CDS             <1..1116
                     /gene="hslU"
                     /locus_tag="SB143_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HslU--HslV peptidase ATPase subunit"
                     /protein_id="HEF9749216.1"
                     /translation="LAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDLANAALNLVKN
                     EQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTKLRNGDLDESV
                     IEIEISQSMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKNALKNEAGEKI
                     LDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRDLLPIVEGSSV
                     QTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDKALYEILTRPK
                     NSLLKQYEQLLKTENLELEFDDEAIKEIAKIASKANEEMQDIGARRLHTVIEKLLEDL
                     SFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            1113..1988
                     /gene="era"
                     /locus_tag="SB143_000661"
     CDS             1113..1988
                     /gene="era"
                     /locus_tag="SB143_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEF9749217.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMNGEDQIIFIDTPGLHESKATLNQFLIQSAIKSMGDCDVILFVASIFDSVKDYENF
                     LSLNPKVPHIIVLNKVDLADNGTLLKKLNEYAKFSKYFKAILPYSCKKKNYQKPLLNE
                     LCKLLPEHEYFYDSEFLTPSSQKDIFREFILESIYENLSEELPYSCEIMIKNTKETSN
                     LFIIDAQIITDTNSHKAMLIGKDGTTLKRIGKDARFKISKLIQNKVLLKLFVIVKKNW
                     QKDEIFLKKILNYEE"
     gene            1978..3051
                     /locus_tag="SB143_000662"
     CDS             1978..3051
                     /locus_tag="SB143_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749218.1"
                     /translation="MKNKAHFISFENLIYKQKNGNFEEDDLFKELTKECDLQNPFEYQ
                     LAFLKQDQIYHCFLARVAKLPKTQFCFPQPLVFQSLFLENKIKEENFCILEIKPQKVF
                     LCFYEQGKFKTFKTLDFCDNIEEFINKSRILELLQHYESKILLSTKAHEIFNLISAKA
                     KLPFKMIQEDKIALSKHSIHHLDKNANFIKHYKKYLPWYFKFIFLFALSFIISIVVLS
                     LIDFAQYQNAKTTHIQNEISQNKIYEIQEKQSQKLKANIEQLQLEIQTQNLLLEKYSE
                     QLSKITQNFKADKNTILILTKAIAWLNDHSLRISNLMIDKTLITIKFSNEEDFNKALQ
                     FTSPQFSLISQDKSLHEITLRAL"
     gene            3051..3608
                     /locus_tag="SB143_000663"
     CDS             3051..3608
                     /locus_tag="SB143_000663"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749219.1"
                     /translation="MNQIEQFLENLSSREKILIYLTTILLAILLSFHFYHSYLKSFFN
                     HEFFIQSNDMDKIITTNQDLNQQIKQLEKELVFIQDKIKSYENYLNVFNKNHETYIKN
                     LQNLALENNLWISNIEWLQSEENSYRKISLNIFGDFSPILSFMKQLENSDLHYQIHKF
                     EIDNTTSLNLHLKLTLSFISLAKLK"
     gene            3693..5480
                     /locus_tag="SB143_000664"
     CDS             3693..5480
                     /locus_tag="SB143_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEF9749220.1"
                     /translation="MNIRKIRVEKIRQFMIKEKLDAYLILSADPHLNEYLPSFYQSRA
                     FVSGFKGSAGSLIITSQDAFLWTDGRYWIQAQKELEGSGILLQKQDANNTFLKWLKEN
                     LNEEQNLGIDFSVLSLSLQKEIQKNCKAELKNIDLISLIWEDRPALPKNKVYEHELEY
                     CSYSRKEKLLLVREKMNKLQAKNHLISSLDDIAWITNLRGNDVCYNPIFLSHLLILEG
                     KALLFIDREKIDFELEKKLNLDGICLKEYNKIQDELKKLQNTNLLIEPSKTTTLLIEI
                     LDKSVEILEEINPSTHLKAIKTDKEIAHIQNAMIEDGVALCKFFTWLEENIKNNTQIS
                     ELDIDTKITEFRSQSPYYISNSFSTIAGFNANAALPHYKAEKESFSYIQKNGLLLIDS
                     GGQYKNGTTDITRVVAIGELNEEQIHDYTLVLKAHIAIASTIFPKDIAMPLLDAITRA
                     PLWQEQLDYTHGTGHGVGYFLNVHEGPQTLSYFSPVLEKTKAKEGMLTSIEPGIYRTG
                     KWGIRLENLVVNAKIENPKNKDFGEFLYFKPLTLCPFEISCIDKTLLDAKEKAWINTY
                     HKEVYEKLSPKLHDNLKALKWLKERTKAV"
     gene            complement(5513..7348)
                     /gene="mrdA"
                     /locus_tag="SB143_000665"
     CDS             complement(5513..7348)
                     /gene="mrdA"
                     /locus_tag="SB143_000665"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEF9749221.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FIVPTRGQILDRNGTPLAINDLGFSISIKPYLTLKRANRGVLEKELNQLQGFFPDLNT
                     TKLAEFYKRNDSYYNQDFIKIIDFIPSQEMMKHYSELNLNQNIRIDPAVQRKYPFGKL
                     ASHIIGYVGKADLQDIKKNEISKLTNFTGKSGIERYYNDVLQGEKGTKIYKVNALNQE
                     VEQLSYTSALSNDIELTIDIELQSFLTQLFEGNAGAAIIMDISDGSILAAGSFPEYDL
                     NPFVTGISYKEWDELSNNLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKSINPSTQF
                     FCNGSIELGGRFFRCWNRAGHGAVDLKHAIKASCDVYFYDGSLQVGIDQISRTLSRIG
                     FGAKTGVDLPNEFVGILPSREWKMQRYKQAWFQGDTLNTSIGQGNFLATPMQIARYTA
                     QIAKGAEVVPHFLKSVENNNTITEDKAQDSNEIFTLFEKSQLPYIRDAMYAVANEQGG
                     TSYHYLRNLEVKVAAKTGTAQVVGFSQADKNRVDEKQLRYYTRSHAWVTSYAPYSKPR
                     YVVTVLVEHGGRTISSGVATAKIYQKMIELGYFKPENKANSPKKN"
     gene            complement(7348..7842)
                     /locus_tag="SB143_000666"
     CDS             complement(7348..7842)
                     /locus_tag="SB143_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749222.1"
                     /translation="MRKTISAYKVKLNGSYVFLGFLCILYQILGSVFLYMPLLYGVFF
                     CYMYFLLEERQKTFNKLDFRWYFSLFFLFFTDITYDFFLFSSWLAFVIFYYTCADWIK
                     TNLKIGKIIPIILVLCVYAFIFILDAIFSYVGDQEFKMPNFGYMISIMFECLFAYMLF
                     RSKF"
     gene            complement(7844..8434)
                     /locus_tag="SB143_000667"
     CDS             complement(7844..8434)
                     /locus_tag="SB143_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEF9749223.1"
                     /translation="MIISAKFITSLDKFDKNFASHFSEVAFLGRSNVGKSSLINSLCK
                     QKKLAKSSATPGKTQLINIFEVLCKKDEDKFSIHFIDLPGFGYAKVSKNLKEIWNKNL
                     DEFLKLRSSIKLFVHLIDSRHTNLDIDLNLDKYLKSFLKPDQRVLKVFTKCDKLNQSE
                     KAKLKNSFKDAILISNLNKMGLDDLEHEVIKQTLGL"
     gene            complement(8431..8862)
                     /gene="lptA"
                     /locus_tag="SB143_000668"
     CDS             complement(8431..8862)
                     /gene="lptA"
                     /locus_tag="SB143_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide transport periplasmic protein
                     LptA"
                     /protein_id="HEF9749224.1"
                     /translation="MSISISLASQIEVKALNFYSDENKGESILSGNVEIIRGDDILTA
                     EKVIIYTDKNRKPMRYEAVQNANFKIVLKGKTYKGSGDKFIYNVAKDIYEIDGNAFIN
                     ELESNQKLYGDRIIVDKRNNVYRVESKDKKPARFIFDLEQK"
     gene            complement(8874..9386)
                     /locus_tag="SB143_000669"
     CDS             complement(8874..9386)
                     /locus_tag="SB143_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749225.1"
                     /translation="MAIRIFGILIALFTITFTILSLQDPYSLNIKSYALNFKNIEASD
                     LNAYELNASNVKSYYKAQSWARYTDKDEFDNFVNFNLDFNLSANKLELKGKEMDKVLL
                     EGNVTYIGLNNTKIFADKVEYAPKNKILSTNTGFKALINGSIINGNTLNYDVEKKILQ
                     VQGVNAWLER"
     gene            complement(9377..9865)
                     /locus_tag="SB143_000670"
     CDS             complement(9377..9865)
                     /locus_tag="SB143_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEF9749226.1"
                     /translation="MIELIFLDVDGCLTDGKIIYTSNGSVIKEFDVKDGAAIEAWIKL
                     GKKIAIITGRNCPCVSARAKDLKIEIVHQGVKDKLTCAKKILEELNLDFSQCAAIGDY
                     FNDKNLLENVGLSFKPKDAHRDLKVDITLDKKGGKAAVAQMIEYIIKKNDMQEEWDKL
                     WL"
     gene            complement(9869..10708)
                     /locus_tag="SB143_000671"
     CDS             complement(9869..10708)
                     /locus_tag="SB143_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEF9749227.1"
                     /translation="MQTIKQKLKKTLPKLLAASLVATFSSGCFGGLFSSVGSAQIYYP
                     SNDFHSSPSGSGSKGTMKPYTINGKTYYPTVVSVGETADGIASWYGPGFHGKKTSNGE
                     TYNQNGLTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQID
                     MIAAGTAPVRLEVIGFGSANSGNNVVHSNINYGASGGIANNGQIYEGGNFMVQIGAFK
                     NPSGAQTIASRYKTYRTYSSTIRKSSVDGLSRVFLTGFRSEEEARDFAASGAFAGAFV
                     VRE"
     gene            complement(10653..11786)
                     /locus_tag="SB143_000672"
     CDS             complement(10653..11786)
                     /locus_tag="SB143_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEF9749228.1"
                     /translation="MKKIIFCFILFYNFLFAQTTTPEFYERQMSVLRNLDIDPSFISD
                     LAFVQSQQDLRSKHAPTLIDGIQNFSKVTPMIRKILAQQEVPEEILYLAMVESGLKAH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAAVHYLKSLKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLRVLIDPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDGALVNYALNNDFAKVDTPSSVALKDLAKNLNMDLATFKKYNPHFKHGFTPPGK
                     GYYMYIPLNKVAFFDKNFKVEKLAKVDTTIPMTKIYVVKSGDSLYKIAKKYNTSVEQI
                     RELNKIAKNHLSINQKLIIPIKENKNANYKTKAKENFTQVVSR"
     gene            complement(11789..12601)
                     /locus_tag="SB143_000673"
     CDS             complement(11789..12601)
                     /locus_tag="SB143_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEF9749229.1"
                     /translation="MFLNLEFKDGLKIIDTHCHLDSEVFKEDLDELLKHSFDNGIEKI
                     IIPGADIKDLPYAAELASKYENVFFAAGVHPYELEGFDEKILRAYLQDEKCVAVGECG
                     LDYFRFKSEDLKEREKEKEEQKRLFVAQLELAKEFKKPVIIHSREANNDTYEILHEHS
                     KDLVGGVLHCFNASEHLLRLSDDGFYFGIGGVLTFKNAKNLVNILPQIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMSEILDLPRQELLRICLENSYRLFFKG"
     gene            complement(12592..13836)
                     /locus_tag="SB143_000674"
     CDS             complement(12592..13836)
                     /locus_tag="SB143_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEF9749230.1"
                     /translation="MNKKILLIDDNKMLGKLLAKKIQTTLNHEVDIVFSLAEVKALPN
                     DEYFLTFADLCLPDAPNGEVVDYVLAKNWPVIVLTASNDKATRDKFMDKDILDYIFKE
                     SDTCIDQIIDSIVKLERYAKTKVILALSKLPERNEIKKILTQRKFNVLAAAHGEEAMS
                     YLNDNSDVKLIIADANMPVISGSELLSEVRARFSDDELGVIILGDKDDALEASLLVSG
                     ANEYLVKPLSKESLNCRLDKCLHYMANMQFLSIYNNLDPISGIKNSNALLSCVEDYLN
                     EIVSKEEEFAFAFLDIDNLRNLNEEYGYEVGDKIIKICADEIVNETKGRDIVGRYSAE
                     KICIVLKNISQERAIKILSRIRVNIKKVGILVNLDEVFFTASIGVVFAKSGDKFEILV
                     DKASKALSQAKANGKDRVEVCS"
     gene            complement(13924..15447)
                     /locus_tag="SB143_000675"
     CDS             complement(13924..15447)
                     /locus_tag="SB143_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749231.1"
                     /translation="MINRVLMKENLGFKEVELEISQGLTVFTGLSGAGKSVLFKGILS
                     AFALSESEAKLVEIELDDKIDLEEYGIEGEEENVFKLLKDKNTKYFINNQSISKKSLI
                     HLSKKFIKYLSAKEINEFSNEKFLNLLDALECAKNPEFEDFLSHFKDDYKQWLQISEE
                     LTTILEEEKRIEELKELASTQIERISKINPKVGEYEELLNLKKKLSKKDKIEAAWEKA
                     SAIFELEKVVIDALNLSEKDTSFFSECLNELRIIAENEKIEDLDFDIEEVLNRIEDLS
                     SLIKRYESIENALEVLENKKNELAHYDNLSFEKKELEKKLEKIEKKINQSTQLLTQAR
                     MQNLKTLEDFLNDYLKNLYMKNVSLELVDTSKITSLGKDEIKLSINAANLKNLSSGEL
                     NRLRLAFIATECRILNSGTGIIFLDEIDANLSGKEAMSIANVLNELSAFYQIFAISHL
                     PQLSSKAHNHFLVEKNASCSTVKKLKDKERIKELARMISGETITDEALEFAKTLFKA"
     gene            complement(15447..16307)
                     /locus_tag="SB143_000676"
     CDS             complement(15447..16307)
                     /locus_tag="SB143_000676"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEF9749232.1"
                     /translation="MQNKIDYKNIKKIGLAARPNSNLDKEILILKEILEKKGVELLLY
                     KESSEIVKLPKYDLDTLFELSDFVISLGGDGTLISLCRKACEYNKAVLGIHAGHLGFL
                     TDFKVDEAEVFFEAFFRGEFRVENPFLLSIILESNDGQIMQKFAFNDVVISKDRKASM
                     AHIEVFRKAKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFDLEIGAKDCIFSIDGQENYKMNDFKSVKVGLSDKSVALIHPKNRDYFQ
                     ILREKLNWGH"
     gene            16400..>17517
                     /gene="aspS"
                     /locus_tag="SB143_000677"
     CDS             16400..>17517
                     /gene="aspS"
                     /locus_tag="SB143_000677"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEF9749233.1"
                     /translation="MRSHYNTDLNSTHIGEVVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASRTRNEFVLIAEGKIRPRGEGLTNPKLKTGEIEVVVSKLII
                     ENESAVPPFGIGDESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIATAETFLKDIFKACGKEIQIPFRQMPYKE
                     AMENYGSDKPDLRFDLKLIDVIDIFAKSNNEIFANIAKDSKKNRVKALRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFN"
BASE COUNT         6237 a         3040 c         2358 g         5882 t
ORIGIN      
        1 ttggctaaga tgatgggctt tccttttatt aaaatcgaag cgagtaaata cacagaggta
       61 ggctttgtag gtcgtgatgt agaaagcatg gtaagagatc ttgcaaatgc agctttaaat
      121 ttggtaaaaa atgaacaaag agaaaaaaat aaagataaaa tcgatgaatt tatagaaaat
      181 aaaattttag aaaaacttct tcccccttta cctaaaggca tcagtgatga aaaacaagaa
      241 gaatataaaa atagccttga aaaaatgagg acaaaactta gaaatgggga tttagatgaa
      301 agcgtgatag agatagaaat ttcacaaagc atgtttgata caaatcctaa tttaccgcct
      361 gaaatgggag caatgcaaga tatagttaag gttataggcg ttggcagtaa aaaagtcaaa
      421 aaagaaatga aaatcaaaga cgctaaaaat gctttaaaaa acgaagcagg agaaaaaatc
      481 ctagatcaag aaagtatcaa aagtgaagcc ttaaaaagag cggaaaatga agggattatt
      541 tttatagatg agattgataa aattgcggtt tcaagtggaa attcaaatcg ccaagatcca
      601 agcaaagagg gtgttcaaag agatttactt cctatagttg aaggctcaag cgtacaaaca
      661 aagatcggca ctttaaaaac cgatcatatc ctttttatcg cagcaggagc tttccatctt
      721 agcaaaccaa gcgatttaat ccctgaactt caaggtcgtt ttcctttaag agtagagcta
      781 gatagtcttg atgataaagc actttatgaa attctaacac gccctaaaaa ttcactttta
      841 aaacaatatg aacagctttt aaaaactgag aatttagaac ttgaatttga tgatgaagcg
      901 attaaagaga ttgcaaaaat tgcttctaaa gccaatgaag aaatgcaaga tataggtgct
      961 agacgcttgc atacagttat agaaaaattg cttgaagatt taagctttga agcagatgag
     1021 tatgcgggta aaaaattcgt agttgataaa aaaatggtgg aagaaaaact tggagatatt
     1081 atagaaaata aagatcttgc aaggtatatt ttgtgaaaag tggctttgtt agcatcatag
     1141 ggcgtaccaa tgcgggaaaa agcactttaa ttaattcctt gctagaagaa aaaatcgccc
     1201 tagtttctca caaacaaaat gccacaaggc gtaaaatcaa agctatagtc atgaatggtg
     1261 aagatcagat catctttata gatacacctg gtcttcatga aagcaaagca acgcttaatc
     1321 aatttcttat ccaaagcgct ataaaatcta tgggtgattg cgatgttatc ttgtttgttg
     1381 ctagtatttt tgatagtgta aaagattatg aaaatttcct aagcttaaac cctaaagttc
     1441 ctcatatcat cgttcttaac aaagtagatc tagctgataa tggcacactt ttaaaaaaac
     1501 tcaatgaata tgcaaaattt agcaagtatt ttaaagctat cttgccctat tcttgcaaga
     1561 aaaaaaacta ccaaaaacca ctgctaaatg agttgtgcaa gctcttacct gaacatgagt
     1621 atttttatga tagtgaattt ttaacaccta gttctcaaaa agatattttt agagaattta
     1681 tacttgaaag tatttatgaa aatttaagcg aagaattgcc ttattcttgt gaaattatga
     1741 taaaaaatac caaagaaaca tccaatcttt ttatcattga tgcgcaaatt atcaccgata
     1801 caaattccca taaagccatg cttataggaa aagatggaac gacgcttaaa agaataggaa
     1861 aagatgcgag atttaaaatt tcaaaactca ttcaaaacaa agtactctta aagctttttg
     1921 tcattgtaaa gaaaaattgg caaaaagatg aaatttttct taaaaaaatt ctaaattatg
     1981 aagaataaag ctcattttat aagttttgaa aatcttatct acaaacaaaa aaatggcaat
     2041 tttgaagaag atgacctttt taaagagcta acaaaagaat gcgatcttca aaatcctttt
     2101 gaatatcaat tggctttttt aaaacaagat caaatttatc attgtttttt agcacgggtt
     2161 gcaaaactac ccaaaactca attttgtttt ccccaacccc tcgtctttca aagcttattt
     2221 ttggaaaata aaatcaaaga agagaatttt tgtatcttgg aaataaaacc gcaaaaagta
     2281 tttttatgtt tttacgagca aggtaaattt aaaactttta aaacactcga tttttgtgat
     2341 aatatagaag aatttataaa caaaagccgt attttagagc ttttacaaca ctatgaaagt
     2401 aaaatactgc taagcacaaa agctcatgaa attttcaatc ttataagtgc aaaagcaaaa
     2461 cttcctttta aaatgattca agaagataaa atcgcacttt caaaacatag cattcaccat
     2521 cttgataaaa atgctaattt tatcaaacac tataaaaaat atcttccttg gtattttaaa
     2581 tttattttct tatttgctct aagttttata atcagtattg tagttttatc attaattgac
     2641 tttgcgcaat accaaaatgc caaaacaaca catatacaaa atgaaatttc acaaaataaa
     2701 atctatgaaa ttcaagaaaa acaaagccaa aaacttaagg ccaatataga acaacttcaa
     2761 ttagaaattc aaactcaaaa tcttttatta gaaaaatact ctgaacaatt atctaaaatt
     2821 acgcaaaatt ttaaagcgga taaaaataca attttgattt taacaaaggc tattgcatgg
     2881 ctaaatgatc attctttaag aatttctaat ctcatgatag ataaaaccct tatcactata
     2941 aaatttagca acgaagagga ttttaataaa gcacttcaat ttacaagtcc ccaatttagt
     3001 cttatctcac aagataaatc cttgcacgaa atcactttaa gagcattata atgaatcaaa
     3061 ttgagcaatt tttagaaaat ctaagttcta gggagaaaat tttaatatat cttacaacca
     3121 tactcctagc aatattactc tcttttcatt tttaccattc ttacttaaaa agctttttta
     3181 atcatgaatt tttcattcaa agtaatgata tggataaaat aatcacgaca aatcaagatt
     3241 taaaccaaca aataaaacaa cttgaaaaag agcttgtttt tatccaagat aaaataaaaa
     3301 gttatgaaaa ctatcttaat gtttttaata aaaaccatga aacatacatt aaaaatttgc
     3361 aaaatctagc tcttgaaaat aatctttgga tctctaatat agagtggttg caatcagaag
     3421 aaaattctta tcgtaaaatt tcactcaata tttttggtga ttttagtcca atactttcct
     3481 ttatgaaaca attagaaaat tcagacttgc actatcaaat tcacaaattt gaaattgaca
     3541 atacaacaag tttaaatctt catttaaaac taacgctttc ttttatttcc ctagcaaaac
     3601 taaaataaat actatagctt tttatctata aaggctataa tgttattttg ataaaaagat
     3661 ttataaaata atgcaaattt aaaaggaaaa aaatgaatat tcgtaaaata agagttgaaa
     3721 aaatcagaca atttatgata aaagaaaaac ttgacgctta tttgatccta agtgctgatc
     3781 cgcatttaaa tgagtatttg cctagctttt atcaaagcag agcttttgta agtggcttta
     3841 agggctctgc tggaagctta atcatcactt ctcaagatgc ttttttatgg acagatggaa
     3901 ggtattggat tcaagcacaa aaggaattag aaggtagtgg catactttta caaaaacaag
     3961 atgcaaataa taccttttta aaatggctaa aagaaaattt aaatgaggag caaaatttag
     4021 gtatagattt ttcagtttta tccttatctt tacaaaaaga aatacaaaaa aactgcaaag
     4081 ccgagctaaa aaatatcgat ttaatcagcc tcatttggga agatcgtcct gcgttaccta
     4141 aaaataaggt ttatgaacat gaattagaat attgctccta ttctagaaaa gaaaaactat
     4201 tattagtgcg tgaaaaaatg aacaaactac aagcaaaaaa tcatcttatt tccagtcttg
     4261 atgatatagc atggattact aatttaagag gaaatgatgt atgctataat cctatatttt
     4321 taagtcattt actaatcttg gaaggaaagg ctttgctttt tatagatagg gaaaaaattg
     4381 actttgaact tgaaaaaaaa ttaaatttag atggaatttg tcttaaggaa tataataaaa
     4441 ttcaagatga gcttaaaaaa ctccaaaata caaatttact cattgagcct tcaaaaacaa
     4501 ctactttact cattgaaatt ttagataaaa gcgttgaaat tttagaagag atcaatccta
     4561 gcacccattt aaaagctatc aagacagata aggaaatcgc acatatacaa aatgccatga
     4621 tagaagatgg agtggcttta tgtaaatttt ttacttggct tgaagaaaat atcaaaaata
     4681 atacacaaat cagcgagctt gatatcgata ctaaaatcac tgaatttaga tctcaaagtc
     4741 cttattatat tagcaatagt ttttctacca tagcaggatt taacgctaat gcagctttac
     4801 cgcattataa agccgaaaaa gaaagctttt cttatatcca aaaaaatgga ttattgctta
     4861 tagattcggg tgggcaatat aaaaatggca ccacggatat tactagagtt gtagctatag
     4921 gtgagttaaa cgaggaacaa attcatgatt ataccctagt tttaaaagca cacatagcca
     4981 tagcaagtac tatttttcca aaagatattg ccatgccttt gcttgatgct atcacaagag
     5041 ctcctttgtg gcaagaacag cttgattata cacacggcac tggtcatggg gtgggttatt
     5101 ttttaaatgt tcacgaaggt ccgcaaactc tttcttattt tagccctgtg cttgaaaaaa
     5161 caaaggctaa agaaggtatg ttaacttcta tagaacctgg aatttataga acaggaaaat
     5221 ggggtattag gcttgaaaat ttggttgtta atgcaaaaat agaaaatccc aaaaacaaag
     5281 attttggtga atttttatat tttaaaccct taacgctttg cccttttgaa atcagttgta
     5341 tcgataaaac cttattagat gccaaagaaa aagcgtggat taatacttat cataaagaag
     5401 tttatgaaaa actctctcct aagcttcatg ataatttaaa agctttaaaa tggctcaaag
     5461 aaagaactaa agcggtttaa caaaaagaaa tcttagaaaa ataatatttt ttctagttct
     5521 tttttgggct attagcttta ttttctggtt taaaatatcc aagttctatc attttttgat
     5581 agatctttgc tgtagcaaca cctgagctta tcgttcttcc accatgttct actaaaacag
     5641 taaccacata acgcggttta gaataaggtg cataagaagt tacccaagcg tgcgatcttg
     5701 tataatatct aagttgcttt tcatcaaccc tatttttatc agcttgagaa aaacccacca
     5761 cctgtgcagt tcctgtttta gcagcaactt ttacttctaa attgcgcaaa taatgataag
     5821 aagtacctcc ttgctcatta gcaaccgcat acatcgcatc tcttatatag gggagttgac
     5881 ttttttcaaa aagggtgaaa atttcattac tatcttgcgc tttatcttct gtgatagtat
     5941 tgttattttc tacacttttt agaaagtgag gtacaacttc agcacctttt gcaatttgag
     6001 ctgtatatct agcaatctgc ataggtgtag ccaagaaatt tccttgccct atggaagtat
     6061 ttaaggtatc accttgaaac caagcttgct tatatctttg cattttccat tctctacttg
     6121 gtaaaattcc cacaaattca ttaggtaaat ccacaccggt tttagctcca aagcctatgc
     6181 gtgataaagt acgacttatt tgatctatac ccacttgcaa acttccatcg taaaaataaa
     6241 catcacaact tgcttttatc gcatgtttta aatctacagc tccatgccct gctctattcc
     6301 aacaacgaaa aaatctcccg ccaagctcta tactaccatt acaaaaaaat tgggttgagg
     6361 gattgatact ttttgaattt aaaaaagaca aaccaacacc cattttaaca acagaacctg
     6421 gaggataata tccattgata agtttatttg taaaaggatg atcaagatta ttagaaagct
     6481 cgtcccattc tttataagaa attccggtta caaaaggatt taaatcgtat tcaggaaagc
     6541 ttcctgctgc caaaatagaa ccatcgctaa tatccataat aatagcagca cccgcattac
     6601 cctcaaaaag ttgcgttaaa aagctttgaa gttctatatc tatggtaagt tctatatcat
     6661 tagaaagtgc cgaagtatag gagagttgct cgacttcttg atttaaggca ttaaccttat
     6721 aaatcttagt tcctttttct ccttgtaaaa catcattata ataacgctct atcccactct
     6781 ttcctgtaaa attggtaagc tttgaaattt catttttttt aatatcttgc aaatctgcct
     6841 tgcctacata gcctatgata tgcgaagcta gttttccaaa aggatatttt ctttgcactg
     6901 caggatctat gcgtatgttt tgatttaaat tgagttctga ataatgcttc atcatttctt
     6961 gagaaggtat aaagtctatg attttaataa aatcttgatt ataataagag tcattcctct
     7021 tataaaattc agcaagctta gtagtgttta aatcaggaaa aaatccttga agttgattta
     7081 attctttttc taatacacct ctatttgccc tttttagagt taaataaggc ttaatagaaa
     7141 tactaaaacc caaatcatta atcgccaaag gagtgccatt gcgatctaaa atttgtccgc
     7201 gagttgggac tataaattca gtttttatag cattttgttt ggcaagttct tcataataca
     7261 catttgattt tatacttaaa taatacacac ggcttaataa aaatataaaa aacaataata
     7321 taaagccaac aaccaaacgc attctcatta gaacttactc ctaaataaca tataagcaaa
     7381 caaacactca aacataatcg atatcatata gccaaaattt ggcattttaa actcttgatc
     7441 tcctacatac gaaaaaatag catctaaaat aaaaataaaa gcataaacac aaaggacaag
     7501 tatgatagga ataatttttc ctatttttaa atttgtttta atccaatctg cacaagtata
     7561 ataaaaaata acaaaggcaa gccaagaaga aaagagaaaa aaatcataag ttatatctgt
     7621 aaaaaataaa aaaaataaag aaaaatacca cctaaaatca agtttgttaa aggttttttg
     7681 cctttcttct aaaagaaaat acatataaca aaaaaataca ccgtaaagca aaggcatata
     7741 aagaaaaaca gagcctaaaa tttgatataa gatacacaaa aaacctaaaa aaacataact
     7801 tccattcagt tttaccttat aagcactgat agtttttctc attttataaa cctaaagttt
     7861 gcttaataac ttcatgttct aaatcatcaa gacccatttt gtttaaattg gatattaaaa
     7921 tagcgtcttt gaaactattt ttaagtttag ctttttcact ttgattgagt ttatcgcatt
     7981 ttgtaaacac ttttaatact ctttgatcag gttttaaaaa actttttaaa tacttgtcca
     8041 aatttaaatc aatatccaaa tttgtatgtc ttgaatcaat caaatgcaca aaaagtttaa
     8101 tcgaacttct taattttaaa aactcatcta aatttttatt ccatatttct tttagatttt
     8161 ttgaaacttt cgcataacca aaaccgggta aatcaataaa atggatacta aatttatcct
     8221 catccttctt acataaaact tcaaaaatat taatcaattg cgtttttcca ggtgtagcag
     8281 aactcttagc aagctttttt tgcttacata aagaattaat taaagaactt ttccccacat
     8341 ttgatcttcc taaaaatgcc acttcactaa aatgggatgc aaaattttta tcaaatttgt
     8401 ctaaagaggt gataaattta gcacttatta tcatttttgc tctaaatcaa atataaatcg
     8461 agcaggcttt ttatccttgc tttcaacacg ataaacatta tttctcttat ctactattat
     8521 cctatcacca taaagctttt gattactttc aagttcatta ataaaagcat ttccatcaat
     8581 ttcataaata tctttagcca cattataaat aaatttatct ccactcccct tataagtttt
     8641 tccctttaaa acaattttaa aattagcatt ttgcacagct tcgtaacgca taggtttgcg
     8701 atttttatct gtatatataa tcactttttc agcagttaaa atatcatcac ctcttatgat
     8761 ttcaacattg ccactgagta tgctttcacc cttattttca tccgaataaa aatttaaggc
     8821 cttaacctct atctggctag ctaaagatat actgatactc atcaaaaata aaattatctt
     8881 tctaaccacg cattcactcc ttgaacttgt aaaattttct tttctacatc gtagtttaaa
     8941 gtatttccgt taataatgct tccatttatc aaagctttaa atcctgtatt ggtgcttaaa
     9001 attttatttt taggcgcata ctctacttta tcagcaaaaa tttttgtatt atttaaacct
     9061 atgtaggtaa cattgccttc aagcaaaacc ttatccatct ccttgccttt aagttccaat
     9121 ttatttgcac ttaaattaaa atccaaatta aaattgacaa aattatcaaa ctcatctttg
     9181 tctgtataac gcgcccaaga ttgcgcttta tagtatgatt ttacattgct tgcattaagc
     9241 tcgtaagcat ttaaatcgga agcttcgata tttttaaaat ttaaagcata ggatttaata
     9301 tttaaagaat aaggatcttg caaacttaaa attgtaaaag taatagtaaa aagagcgatc
     9361 aaaattccaa aaattcttat agccaaagct tatcccattc ctcttgcata tcatttttct
     9421 ttataatata ctctatcatt tgagccacag ctgcttttcc gcctttttta tcaagtgtga
     9481 tatcaacttt taaatcccta tgtgcatcct taggcttaaa actaaggcca acattttcaa
     9541 gtaaattttt atcgttaaaa taatccccta tagccgcaca ttgagaaaaa tctaaattca
     9601 gctcttctaa aattttttta gcacaagtta atttatcttt aacaccctga tgtacaattt
     9661 ctattttcaa atccttagca cgagcactca cacaaggaca atttcttcca gtgataatag
     9721 caattttttt acccagctta atccaagctt ctatagctgc gccatcttta acatcaaatt
     9781 ctttaatcac acttccattg gaagtgtaga tgattttacc atctgtaaga caaccatcta
     9841 catctaaaaa tatcaattct atcatttttt actcacgcac aacaaaagca ccagcaaatg
     9901 caccacttgc tgcaaaatct cttgcctctt cttcacttct aaatcctgtc aagaaaacgc
     9961 gactcaagcc atcaaccgaa cttttgcgta tggttgaaga ataggttcta taagttttat
    10021 atctagatgc tatagtttga gctcctgatg gatttttaaa cgctccaatt tgcaccataa
    10081 aatttccacc ttcataaatt tgaccattat ttgcaattcc gccactagct ccataattta
    10141 tatttgaatg aacgacatta ttacctgaat tagccgaacc aaaacctata acctcaagtc
    10201 tcacaggagc tgttcctgca gcaatcatat cgatttgact tgcagcaccc ttagaaagat
    10261 ctataattct gttatttaca aaaggacccc tatcgttaac acgcacggta acttggcggt
    10321 tattgtttag gttagttacc tttaaaatgg tattcatagg taaagttttg tgagctgcgg
    10381 ttaaaccatt ttgattataa gtttcaccat tagaagtttt tttaccatga aagcccggtc
    10441 cataccaact tgctatacca tctgctgttt cacccactga tacaacagtt ggataataag
    10501 ttttaccatt tatagtataa ggtttcatag tccctttact tccggatcct gaaggactac
    10561 tatgaaaatc attacttgga taatatattt gtgctgaacc tacgctagaa aaaagacctc
    10621 cgaagcatcc gctagaaaaa gttgcaacta aactagcggc taacaacttg ggtaaagttt
    10681 tctttagctt ttgttttata gtttgcattt ttattctcct taataggtat gattaatttt
    10741 tgattgatac ttaagtgatt tttggcaatt ttatttaatt ctcgaatttg ctctacgcta
    10801 gtattatatt ttttagcgat tttatataaa gaatcgcctg attttacaac ataaatttta
    10861 gtcataggta tggttgtatc tacttttgca agcttttcaa ctttaaaatt tttatcaaaa
    10921 aaagctactt tatttaaagg aatatacata taatacccct tacctggagg agtaaaacca
    10981 tgtttaaaat gtggattata ttttttaaaa gttgccaaat ccatatttaa atttttagcc
    11041 aaatctttta atgcgaccga agaaggagta tcaacctttg caaaatcgtt atttaaagca
    11101 taattaacca aagctccatc tttatcaagt aaaaaatccc tatcattagc caagaaagct
    11161 aaagttaaaa ttttgcgtat aaaatttcta gtttctaaag aaagatattt tttatcagga
    11221 tcgattaata ctcttaaatc atcacttcct gcttgcttta ttgcttgacg caatttccca
    11281 tttccacaat tataagctaa aagtgctaaa taccatttcc caaattcttc ttttaagctt
    11341 tttagataat gaaccgcggc atatgtagat tttacaggat cgcgtctttc atcaacataa
    11401 gcatcaatcc taagtcctaa atttcttgcc gtgggttgca taaattgcca cacacctact
    11461 gccttagcat tagaaacgct atgcgctttt aatcctgatt ctaccatagc tagatataaa
    11521 atttcttcag gaacttcttg ttgtgctaga atttttctta tcataggagt aacttttgag
    11581 aaattttgta taccatcaat caaagtcgga gcatgctttg atcttaaatc ctgctgactt
    11641 tgcacaaaag ctaaatcact gataaaactt ggatcaatgt ctaaatttct taaaacactc
    11701 atttgtcttt cataaaattc aggagtggta gtttgtgcaa aaagaaagtt ataaaataaa
    11761 ataaaacaaa atataatttt tttcatattt aacctttaaa aaataatctg taagaatttt
    11821 ccaagcaaat ccttaaaagc tcttgccttg gtaaatcaag aatttcactc attttattgg
    11881 ctacaaattg agtcaataaa ggctcattcc ttttaccacg ataaggctct ggagtaagat
    11941 agggagcatc ggtttctagc aacaatctat cttttggaat ttgtggtaaa atatttacta
    12001 aattcttagc atttttaaat gttaaaacac caccgattcc aaaataaaat ccatcatcac
    12061 taagacgcaa taaatgttcg cttgcgttaa aacaatgcaa aacccctcca acaagatctt
    12121 tagaatgctc gtgtaaaatt tcataagtat cgttatttgc ttcgcgagaa tggataataa
    12181 caggcttttt aaattcttta gctagctcaa gttgagctac aaaaagcctt ttttgctcct
    12241 ctttttcttt ttctctctct tttaaatctt cacttttaaa acgaaaataa tcaagtccac
    12301 attcacctac ggccacgcat ttttcgtctt gcaaatatgc tcttaaaatt ttctcatcaa
    12361 aaccttctag ctcataagga tgcacacctg cggcaaaaaa tacattttca tatttgctag
    12421 caagttctgc tgcataaggt aaatctttaa tatctgcacc tggtatgatg attttttcta
    12481 taccattatc aaatgaatgc tttaaaagct catctaaatc ctctttaaat acttcactat
    12541 ctaaatgaca atgagtatcg atgatcttta gaccatcttt aaattcaaga tttaagaaca
    12601 tacttctact ctatctttac cattagcctt agcttgcgaa agtgcttttg aagctttatc
    12661 gactaagatt tcaaatttat ctccactctt agcaaaaact acccctatag aagcagtaaa
    12721 aaagacttca tctaaattga ctaaaattcc aacttttttt atattgactc gaatacgaga
    12781 aagaatttta atcgcccttt cttgcgaaat attctttaat actatgcaaa ttttttcagc
    12841 actatatcta cccacaatat cacgcccttt ggtttcatta acaatctcat cagcgcaaat
    12901 tttaataatt ttatccccta cttcatagcc gtattcttcg tttaaatttc ttaaattatc
    12961 tatatctaag aatgcaaaag caaattcttc ttctttgctt acaatttcat ttaaataatc
    13021 ttcaacgcaa ctcaataaag cattggaatt ttttatcccg gaaataggat caagattgtt
    13081 ataaatgctt aaaaactgca tattggccat ataatgaaga catttatcca agcgacaatt
    13141 taaactttct ttacttaagg gttttaccaa atactcatta gctccactta caagcaaact
    13201 agcctctaaa gcatcatctt tatcacctaa aataattaca cccaattcat catcactaaa
    13261 acgcgctctt acttcgctta aaagctcact tccgctaata acaggcatgt tcgcatcagc
    13321 gataataagc ttcacatcgc tattgtcatt taaataactc atcgcttcct caccatgagc
    13381 agcggccaaa acattaaatt ttctttgtgt gagaattttt tttatttcat tacgttcagg
    13441 aagtttactt agggctaaga taaccttagt cttagcataa cgctcaagct tgacaataga
    13501 atctataatc tgatctatac aggtatcgct ttctttaaag atataatcta aaatatcttt
    13561 atccataaat ttatctcttg tagctttatc gttgctcgcg gttaatacaa taacaggcca
    13621 attttttgcc aaaacataat ccaccacttc cccattaggt gcatcaggca agcataaatc
    13681 tgcaaaagtt aaaaaatact catcattggg caatgcctta acttcagcaa ggctaaaaac
    13741 aatatcaact tcatgattta aagtagtttg tatcttttta gctaaaagct ttccaagcat
    13801 tttattatca tcgatcagca aaattttttt attcataatc tataaaatac cttttttaaa
    13861 actaaatctt tataataaaa ttaaaaaaat cccaattcta acacaaacaa ataaaaattc
    13921 cgcttaagct ttaaacaaag ttttagcaaa ttccaaagct tcatctgtaa tagtctcgcc
    13981 gcttatcatt cttgctaatt ctttaattct ctctttatct ttaagttttt taaccgtgct
    14041 acaagaagca tttttttcaa ccaaaaaatg attatgagct tttgaagaaa gctgcggtaa
    14101 gtgagatata gcaaaaattt gataaaaagc agaaagctca tttaaaacat tggctatact
    14161 catcgcttct ttgccactta aattagcatc aatctcatct aaaaatatta tccctgtgcc
    14221 tgaatttaaa attctacact cagtcgcgat aaaagcaagt cttaaacgat taagctcacc
    14281 tgaacttaaa ttttttaaat ttgcagcatt gatacttaat ttgatctcat cttttcccaa
    14341 agaagtgatt tttgaagtat ctactaattc caaactcaca tttttcatat aaaggttttt
    14401 tagataatcg tttaaaaaat cctctaaagt ttttaaattt tgcatacgag cttgagttaa
    14461 taactgagta ctttgattga ttttcttttc gattttttct agtttttttt caagttcttt
    14521 tttttcaaag cttaaattat cataatgagc gagttcattt tttttatttt ccaatacctc
    14581 taaagcattt tctatactct cataacgctt gattaaagag gataaatcct cgattctatt
    14641 gagtacttct tctatatcaa aatccaaatc ttcgattttt tcattttcag ctatgatgcg
    14701 aagttcgttt aaacattcac taaaaaaact cgtatctttt tcgctaagat ttaaagcatc
    14761 aataactact ttttctaatt caaaaatagc acttgccttt tcccaagctg cttctatttt
    14821 gtcttttttt gataatttct ttttaagatt taaaagctct tcgtattctc cgactttagg
    14881 attgatttta gaaattcttt caatctgcgt gcttgctaat tctttaagct cttcaatcct
    14941 tttttcttct tctaaaattg tagtcaattc ttctgaaatt tgaagccatt gtttataatc
    15001 atctttaaaa tgagataaaa aatcttcaaa ttcaggattt ttcgcacatt ctaaagcatc
    15061 taagagattt aaaaatttct cattgctaaa ttcattgatt tctttagcac ttagatattt
    15121 aataaatttt ttactcaaat gaatcaaact tttttttgaa atactttgat tattgatgaa
    15181 atattttgta tttttatcct ttaaaagctt aaaaacattt tcctcttcac cttctatgcc
    15241 gtattcttct aaatctatct tatcatcaag ctcaatctca acaagctttg cctcactctc
    15301 gcttaatgca aaagcagaca atataccctt aaagagtaca gactttcccg ccccgcttaa
    15361 acccgtaaag actgtaagtc cttgagaaat ttcaagctca acctctttaa agccaagatt
    15421 ttctttcatc aaaactctat ttatcatcaa tgtccccaat ttaatttttc tcttaatatt
    15481 tgaaaataat ctcgattttt aggatgtata agtgccacac ttttatcact aagccccact
    15541 ttaacgcttt taaaatcatt cattttataa ttttcttgtc catctatact aaaaatacaa
    15601 tcttttgcgc ctatttcaag atcaaagccc ttaggcagta ctatagggcg ttgggttaaa
    15661 gaatgcgaac aaacgggcgt aagtataaaa gcttgcgcta aagtataaac tataggccca
    15721 tttgcactta aattgtatgc tgtagaacct gctggagtgg ctactataag accatctcca
    15781 aaatattcgt taaatttttt agctttgcga aatacctcta tatgcgccat agaagctttt
    15841 ctatccttgc tgatcactac atcattaaaa gcaaattttt gcatgatttg accatcatta
    15901 ctttctaaaa taatactcaa taaaaaagga ttttctaccc taaattctcc cctgaaaaaa
    15961 gcttcaaaaa aaacttcagc ttcatccacc ttaaaatctg ttaaaaatcc taaatgaccc
    16021 gcatgaattc ctaaaaccgc tttattatac tcgcaagctt ttcggcataa agaaatcaaa
    16081 gttccatcac cacccaaaga aattacaaaa tctgaaagct caaacaatgt atcaaggtcg
    16141 tattttggta attttacaat ttcagaactt tccttataga gcaaaagctc cacacctttt
    16201 ttttctaaaa tttcttttag aatcaaaatt tccttgtcta aatttgaatt aggacgcgcc
    16261 gcaagtccga tttttttaat gtttttataa tctattttat tttgcataaa aaattataac
    16321 aaatcttagc taagcaaaag aataaaaata ttataatttt aacttatatg ttaaaaaaat
    16381 taattttcaa ggaaaaattt tgcgaagtca ttacaataca gacttaaatt ctacccacat
    16441 aggcgaagtg gttaaacttt gcggctgggt taatagctac cgagatcatg gcggcgtaat
    16501 ttttattgat ttaagagatc gtagtggtat tatccaactt gtatgcgatc caaatgatag
    16561 caaagaagct catgaaatag cctctcgcac aagaaatgaa tttgttttaa tagccgaagg
    16621 aaaaattcga ccccgaggag aaggacttac aaatcctaaa ttaaaaaccg gtgaaattga
    16681 agtagtagta agcaagctca ttatcgaaaa tgaaagtgct gtccctcctt ttggcatagg
    16741 tgatgaaagt gtaaatgaag aattacgcct taagtaccgc tttttagatt taagaaatcc
    16801 taagctttat gaaaattttg ccctacgctc caaagcttgt atagctgcta gaaattcttt
    16861 agcaaatatg ggatttttag aagttgaaac ccctatctta accaaagcca ctccagaagg
    16921 agcaagagat tatcttgtac catcacgcgt acatcaagga gaattttatg ctcttcctca
    16981 aagcccacaa cttttcaaac aacttttaat gtgtagcggc tttgatcgtt attttcaaat
    17041 tgctaaatgc tttagagatg aagatttaag agcagatcgt cagcctgaat ttacacaaat
    17101 tgatgttgaa atgagttttt gcgagcaaaa agatgtgatt gctacggctg aaaccttttt
    17161 aaaagatatt tttaaagctt gtggtaaaga aattcaaatc ccttttagac aaatgcctta
    17221 caaagaggct atggaaaact acggaagtga taagcctgat ttgcgttttg atttaaaact
    17281 gatcgatgtt atagatatct ttgcaaagtc aaataatgaa atttttgcaa atattgccaa
    17341 agatagcaaa aaaaatcgtg tcaaagcttt acgcgttcca aagggtgata ctatcttttc
    17401 aaaaagacaa atgcaaagat ttgaagaatt tgtacgcaaa tttggagctc aaggcttagc
    17461 ctttatacaa gttaaagaag atgggcttaa aggtccactt tgcaaatttt ttaacga
//
LOCUS       DARAII010000023        17132 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.023, whole genome shotgun sequence.
ACCESSION   DARAII010000023 DARAII010000000
VERSION     DARAII010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17132)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17132)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17132
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.023"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1172)
                     /locus_tag="SB143_000678"
     CDS             complement(<1..1172)
                     /locus_tag="SB143_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEF9749234.1"
                     /translation="MMNSFYNGISGVKSNSFGIDVYANNIANVNTTGFKYSDAQFKDI
                     FYSTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDAAGNLVDSYGNFVLGTMNPAFAGVSYSDRVAGLMGDYLNTGTPVNS
                     GFTVNSNNSFSIGTTGSQGAIKVPVNMYLPPQVTQNVKWSGSLNTNATTEVVKVDLDP
                     AKFNVQKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLG"
     gene            complement(1176..2036)
                     /locus_tag="SB143_000679"
     CDS             complement(1176..2036)
                     /locus_tag="SB143_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEF9749235.1"
                     /translation="MLTSSDWTMTNTNTNTAATTTSTSTTSDTSSTSSSGLVSNPNAT
                     LDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQLL
                     SNSFSTSMSTSAIGAIGKMATVSDNKIKLTGSDEIIALKMYLPEDSDENGVTLEVYDS
                     NNKLVFSEKSGEQSVSQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANYG
                     TYPIEGVVFKEGIAYAKMAGQEVPFDAISEITDYKLSSSSSTGSGSSGSGSSGDSSGS
                     TEDGNKEEKA"
     gene            complement(2094..4058)
                     /locus_tag="SB143_000680"
     CDS             complement(2094..4058)
                     /locus_tag="SB143_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEF9749236.1"
                     /translation="MSNLTPSNDILNLTPSKTNTTHSSSSKTKEQDLKKSDNTTQDDT
                     ESFLNSLLNSIEETNEFLPDHMKISKKEVVNEAMDKLQNGVFSESDKISIFESASFMQ
                     ILSLLDKLKADTADIKLANLSTQLSQLVKTEANFNALKSASNLSELLNIAKDLGLNVK
                     NIKVDRLLDLKATFPNLDKANFFKGAVDNVFKEIINNKLAHISKNLNQNVQNLNHTPH
                     ANLSQNSKMTKKDDTSLLSQTLKNLDAIISSKKEKNEVKNDNVKIQTDGETAELKNTS
                     KNLTHSESLKELEQENLTNNDKKIPSQEVQNKEQSKEFKNDKNTLLNESLKKDDKELK
                     NANKANVQDLTPSKNNTTQDKLPMQDKVSARDKALTQEKIIPQEKVSTQEKTLPQDKV
                     LIQEKPLNNKEGLNQETNNIKNIKDLNQALDKNNNLSENPKEQVKNENTNFNKTSNKE
                     NVRDSQNLSLKLSPKDLNLNKDNTNFTHYTNKENYTQEQGKIQSENTEKNPLDDLNSL
                     VKDLNKISQNNTKNITPKETLQHFSQDLKAAMEQYKAPITKLSITLNPHNLGEVEVTL
                     VQRGNNLHINFNSNTNAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGK
                     NRSGYGFKDVLDGKNESEKVNLELVLAKYF"
     gene            complement(4072..4395)
                     /locus_tag="SB143_000681"
     CDS             complement(4072..4395)
                     /locus_tag="SB143_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEF9749237.1"
                     /translation="MSKPLNTEFFIELDTPVINRKSEVLLQVLELLETLKSNQNEKMA
                     RISSELTELLENEENLEKITRAQNLEELLNILTALNEDKMIKVYENAYLKERFPHLAS
                     SQFLK"
     gene            4524..6332
                     /gene="typA"
                     /locus_tag="SB143_000682"
     CDS             4524..6332
                     /gene="typA"
                     /locus_tag="SB143_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEF9749238.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPQNVRVRKRYLDPTQRKRMEKAKS"
     gene            6332..6982
                     /locus_tag="SB143_000683"
     CDS             6332..6982
                     /locus_tag="SB143_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEF9749239.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFIAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHVFSKENHYLIATLTNPFFIDLKESLEKNFKNLENNLKLIEEKIIKI"
     gene            complement(6979..8328)
                     /locus_tag="SB143_000684"
     CDS             complement(6979..8328)
                     /locus_tag="SB143_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEF9749240.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKVIQEELEKKSKELSEFLSIKAENEKLKREQKENEERLKFEVKEE
                     AFKEFKEQEGKKLELEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQNEYIGDEVKEVPKGVNGADCLHIVKDSFGNICGSILYES
                     KRTKEFNKEWIDKLKLDSIAAKSDIAVLITKTMPKDKQKTHFKEGILICTFAEFKGVL
                     AVLRENIVNACKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGLKSLENLAKDED"
     gene            8431..9633
                     /locus_tag="SB143_000685"
     CDS             8431..9633
                     /locus_tag="SB143_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEF9749241.1"
                     /translation="MQKHTKIHGFAKFKLIIILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFVTLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFGLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKERK"
     gene            9630..10331
                     /locus_tag="SB143_000686"
     CDS             9630..10331
                     /locus_tag="SB143_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEF9749242.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDDYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            10541..11533
                     /locus_tag="SB143_000687"
     CDS             10541..11533
                     /locus_tag="SB143_000687"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEF9749243.1"
                     /translation="MYIVLILSLFLMPKFINWAKKKNASQPIYEHAPQNHQIKSHTPT
                     MGGVIFVFCAIFASLLCIKFDNLFALMGLLCLISFCFIGVIDDLGKILQKNNHSGLSP
                     KAKMFGLIFASFLCLAPLYFSGILSADFYIPFYKYPLFNMYIFALFFWILVLISSSNA
                     VNLTDGLDGLATVPSIFSLATLGVFLYLSGNLIYSEYLFLPKINGLGELVVICAALIG
                     ALMGFLWFNCYPAQIFMGDSGSLALGGFIGFLTVVSKNEILLLLVGFVFVLETISVIL
                     QVGSFKIWGKRVFKMAPIHHHFEKVGWVENKIIVRFWMIALLSNLLALASLKLR"
     gene            11644..13011
                     /locus_tag="SB143_000688"
     CDS             11644..13011
                     /locus_tag="SB143_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HEF9749244.1"
                     /translation="MSNSTKTFIIVADIILFIALLALLPFETKVNQGLAILAFIAVLW
                     LSEALHVTITAILIPILAVIMGLMPTKSALHGFADPNIFLFFGGFALAAAMHFQELDK
                     IIAQRILMLARGNFALAALYIFFTTAFLSMWMSNTATAAMMLPLAIGMLSQLDYEENK
                     NTYFFVLLGIAFSASIGGIGTLVGTPPNAIVATNLNITFAQWLQYGIPIVIIFMPLMI
                     LVLYVTFKPNLKFQINTDLEQKIPMDTQKYITLIIFAIVAMCWIFSSYINPFVSNLLG
                     FEKKIANFDSVIAILAAVLVCAFRVVSWKKVQENTDWGVLMLFGGGITLSLVLKDSGA
                     SKIMADGIISLIAGGHLFLIGLLVSLFIVFLTEFTSNTASAALLVPLFISMAESLGAP
                     PLGLALIIGIGASCAFMLPVATPPNAIVFGTGYIKQSQMVRVGIYLNVLCSIIIALMA
                     YFFWL"
     gene            complement(13039..13617)
                     /locus_tag="SB143_000689"
     CDS             complement(13039..13617)
                     /locus_tag="SB143_000689"
                     /inference="COORDINATES: protein motif:HMM:NF024573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749245.1"
                     /translation="MEDAERKHQSNMIYAIEEPETSQHPNYQRIIIESLKKLAQNKGR
                     QILITTHTPEIARMVNKENIIFIQKDNKDKRIVYHGDEIDIEILVDALSIIVPNSKAL
                     SKGRELVKAMKEIVPRQLFEVAIQASIGNKIIARENVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVHLPQEAFLSVLKID"
     gene            complement(13626..14081)
                     /locus_tag="SB143_000690"
     CDS             complement(13626..14081)
                     /locus_tag="SB143_000690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749246.1"
                     /translation="MLQIKKIWEKGKLSKTYIVCDYPTNWEKPLITLKIQDLRKLLSK
                     ESEVNQNIKKEIRNFLFSQESLSFKEQEIDISTKETDIVSIYNKLKEKMPKFLLFKTD
                     RTNTDKDNEITQITNITSKELSSLFSYEFKSDNGVSFNKRGSGVKRLFY"
     gene            complement(14111..14389)
                     /locus_tag="SB143_000691"
     CDS             complement(14111..14389)
                     /locus_tag="SB143_000691"
                     /inference="COORDINATES: protein motif:HMM:NF024573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749247.1"
                     /translation="MKLVKCKIENFRSYENTEFNFSDLGVIIGKNDVGKSTLFDALDI
                     FFENNKALEDDVNINSSENKFSITCFFRLNHRDRLILMLVKAKEHKHL"
     gene            complement(14392..>17132)
                     /locus_tag="SB143_000692"
     CDS             complement(14392..>17132)
                     /locus_tag="SB143_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEF9749248.1"
                     /translation="EILAKERSTRKKSEFAYLPYLNSSLFEKQSIENTLEISNLNNDL
                     KLNYYKNTVLKDDKCKTKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVL
                     GNVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNTQFDLDAKDISELRKSLRK
                     EDKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILI
                     TGRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWI
                     ELLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLSHYPNIKERMSKY
                     KRIVKDYKEGFYTDKNLIAKEIKNLQESFKNFCLKDKFNKEIKQLTNGANEYSKKYGD
                     FLADEHHDEKFKSFFSKNMFEFSFDEKVAIKEFANLKKEYDNIFNLESNHPFEWRFEF
                     PEILDDDGNFKGFDLIIGNPPYIKENDNKDLFTNTKKLRTYQGKMDIWYHFVGRGFDI
                     LKNNGYLAFIATNNWVTNSGAKKLRNIVLEESQILSLVDFSSFMVFDSASIQTMIMQF
                     QKIKPPKNYEFHFAKITTQTPIYEDALSLLKNEKTQNNEILSINLTPKKFIDKTLNFT
                     KSDYEELFNKIQKYGKFYLEEREVAQGIVPNPDIITKRNISDEMVSKGIKVGDGVFVI
                     EKDFLNVCEYEKKYLKPLYEVEHFGKYYFNKNNSKQLIYTTKNNSKKENIPTIIKHLQ
                     KFRSIMNNRRENLNKRLDFYHLHWARDERFFESGEKIVSVRKCIEPIFSYLNNEAYVM
                     LSLNVIKTQRINVKYLTAILNSKLVAFWLKHKGKMQGNNYQIDKEPLLNIPIVDTNSK
                     NKKLADELINLVDGILKAKEQNKNANTQELENKINSLVYKLYNLTEDEIKIIENKE"
BASE COUNT         5022 a         2888 c         2711 g         6511 t
ORIGIN      
        1 cctaaatcaa tattaattgt tccaccattt ggatttgcaa tgcttgtaat attgttttga
       61 agcaaagcac catttttatc aaaaaccata tttccttcag tcggattgcc tacggcattg
      121 ccattagaat cataaatttg tgcaatagct ttatattgta tattatcgcc ttcttgcggt
      181 aaaactcttt caagtgtaac ccttaaagtg cttttacttc catctgcatt ataaataggg
      241 gattctaaaa tatctttatt ggctttttgt tgctctgttg aaatttgagc tgtatcaagc
      301 ttgatgctat tttcatccaa tccttttaaa tcaagctcgt tacttttaaa atttagattt
      361 tcatctaaag tcgcttcaaa gcttgttttt acgccattat catcagtgaa atttaaaata
      421 atcctatcac ccgctttagc actaaacaca tcttctttgc taacactacc actaactaca
      481 tatttgccat cttcagtctt ttggacatta aatttcgcag gatcaagatc gactttaacc
      541 acttctgttg ttgcattcgt atttaaactt ccactccatt ttacattttg agttacttgc
      601 ggaggtaaat acatattcac aggtacttta atagcccctt gagaaccggt tgtgcctata
      661 ctgaaagaat tatttgaatt tacggtaaag ccactattta caggagttcc tgtgttaaga
      721 taatccccca taagccccgc gactctatca ctataactca ctccagcaaa agcaggattc
      781 atagttccta aaacaaaatt tccataagaa tctaccaaat ttccagcagc atctcttcta
      841 aatgatccat ttctagtata gtaagcattg ccatcagcac ccaaaacacc aaaaaatcct
      901 tttccttgca aagccacatc aaattcgcca tcacttgcta caggtgaacc ttgttcaaaa
      961 acgacttgag aagaagccgc accacttcca tagcctcctt gggcagggtt agtggattgg
     1021 gttgttatgg tgctataaaa aatgtcttta aattgcgcat ctgagtattt aaagcctgtg
     1081 gtattgacat ttgcgatatt gttcgcataa acatctatac caaagctatt gctttttact
     1141 ccagaaatcc cattataaaa tgaattcatc atggcttatg ccttttcctc tttgttgcca
     1201 tcttctgtag atcctgaaga atctccgctt gaaccacttc ctgaactacc gcttcccgtg
     1261 ctagaagaag agcttaattt ataatcagtg atttctgata tagcatcaaa aggaacttct
     1321 tgacccgcca tttttgcata agcaataccc tctttaaaaa caacaccttc gataggataa
     1381 gtaccataat ttgcagtgat tttttcgcca tttttattgt tataaaccat tttaacagta
     1441 tactcgccat cacccgcata aacaccatcg ttatttcttc ctggccactc catcgtaaag
     1501 agcccttgag aaacagattg ttcgccactt ttttcactaa atacaagctt gttgttgcta
     1561 tcgtatactt ccaaagtaac cccattttca tccgaatcct caggcaaata cattttaagc
     1621 gcgataatct catctgaacc tgtaagcttg attttgttat ctgaaacagt tgccatcttt
     1681 cctatagctc cgatagctga agtactcata cttgtgctaa aagaatttga aagtaattgc
     1741 atagtttcaa ccattttttg catggtagta tttgtatttt gttgcatttc aagtgctgat
     1801 aattgagaag tttgcgtaag cattttgtca ctatccatag gatcagttgg atcttggtgc
     1861 tgaagctcga tcaaaagaag ttttaaaaac gcatctttat caagcgttgc atttggatta
     1921 gaaacaagac ctgaactact ggttgaactt gtatctgaag tagtacttgt gctagtggtg
     1981 gtagcagcag tattagtatt tgtatttgtc atagtccaat ctgatgaagt taacattata
     2041 aactcctttt tatatttaag tcttttttta ataaaagcaa taagtgttcc aacttagaaa
     2101 tacttcgcta aaacaagctc tagattgact ttttcacttt cattttttcc atctaaaaca
     2161 tctttaaaac catatccact acgatttttt ccttgatttt gattttgctc tcttttacct
     2221 tgatcactaa aattcatttc aagcccagta aatcccatat ttacaagaga atttttaaac
     2281 tcggcttgat tttggataaa caaattcatt gcattggtat tggaattaaa attgatatga
     2341 aggttattac ctctttgtac caaagttacc tcaacttctc caagattgtg aggatttagc
     2401 gtgatactaa gcttggtgat tggggctttg tattgctcca ttgctgcttt taaatcctgc
     2461 gaaaaatgtt gtaaggtttc cttaggagtg atatttttag tattgttttg tgaaatttta
     2521 tttaaatctt tcactaaaga atttaaatca tctaaaggat ttttttcggt attctcactc
     2581 tgtattttac cttgctcttg tgtataattt tctttattag tgtagtgagt gaaatttgta
     2641 ttgtctttat tgagattaag atcttttggg cttaatttca agctcaaatt ttgagaatct
     2701 cttacatttt ctttgttgga agttttgtta aaatttgtat tttcgttttt aacctgttct
     2761 ttaggatttt cacttagatt attattttta tccaacgctt ggtttaaatc ttttatattt
     2821 ttgatattgt ttgtttcttg atttaaaccc tctttgttat taagaggctt ttcttgtatc
     2881 aatactttat cttggggcaa ggttttttcc tgtgttgata ctttttcttg tggaattatc
     2941 ttttcttgag ttaatgcttt atctcgtgct gatactttat cttgcattgg caacttatct
     3001 tgtgtggtat tatttttgct aggtgttaaa tcttgcacat tagctttatt tgcatttttt
     3061 aattctttat catctttttt taaagactca tttaagagtg tatttttatc atttttaaac
     3121 tctttgcttt gttctttatt ttgcacctct tggcttggaa tttttttatc attgttggtt
     3181 aaattttctt gttcaagctc ttttaaagac tcgctatgag ttaaattttt agaagtattt
     3241 tttaattctg ctgtttcacc atctgtttga attttaacat tatcgttttt aacttcattt
     3301 ttttcttttt tgcttgaaat gatagcatct aaattcttta aagtttgaga aagcaaagaa
     3361 gtatcatctt tttttgtcat tttagaattt tgactaagat tagcatgtgg agtgtgattt
     3421 aaattttgca cattttggtt taaattttta ctgatatgag caagtttatt gtttataatc
     3481 tctttaaaaa cattatccac tgcgccttta aagaaattag ccttatccaa atttggaaaa
     3541 gtagccttaa gatctagcaa acgatctact ttgatatttt ttacatttaa gcccaaatcc
     3601 ttagctatat ttaaaagctc gctaagattg cttgcgcttt ttaaagcatt aaaattagct
     3661 tctgttttta caagctgaga aagctgggtg gaaagattgg caagtttgat atcggccgta
     3721 tctgctttta acttgtcaag caaagataaa atttgcataa aagaagcaga ttcaaaaata
     3781 cttattttat cactctcgct aaaaacccca ttttgtaatt tatccatagc ttcattaaca
     3841 acttcttttt tactgatttt catatgatca ggcaaaaact catttgtttc ttcgatagaa
     3901 ttgagtaaag aatttaaaaa actctctgta tcatcttgtg ttgtattgtc agattttttt
     3961 aaatcctgct ctttagtttt gctcgatgaa ctatgggttg tatttgtctt acttggagta
     4021 agatttaaaa tgtcattact tggggtcaaa tttgacatga tggttcctta attattttaa
     4081 aaattgactt gacgctaaat gaggaaatct ttcttttaaa taagcatttt catatacttt
     4141 aatcatctta tcttcattta aagcagttaa gatatttaaa agctcttcta aattttgagc
     4201 cctcgtaatt ttttcaagat tttcttcatt ttccaaaagc tctgtaagct cgcttgatat
     4261 tcttgccatt ttttcatttt gattagattt taaagtttct aaaagctcta aaacttgaag
     4321 caatacttca ctttttctgt tgattactgg agtatcaagt tctataaaaa actctgtatt
     4381 taatggtttt gacattttaa cttccttttt aaaaatgata tctaagtaga ttggaagcaa
     4441 gaatcgttcc aacttttgct ttttgaaaaa ttaagcaaaa gttctatata attttggctt
     4501 tgaatttaaa tttggagagc atcttggaaa atattagaaa tatcgcagtt atagcccacg
     4561 ttgaccatgg taaaaccact atggtagatg aactactaaa acaatcaggt acttttagtg
     4621 aaagagaaca aatttcagaa cgcgttatgg atagtaacga tatagaaaaa gaacgcggta
     4681 tcaccatact ttcaaaaaat acagctatca attataaagg cacaaaaatc aacatcatag
     4741 acactccagg ccacgctgat tttggtggag aagtagagcg tgttttaaaa atgatcgatg
     4801 gggttttgct cttagtcgat gcgcaagaag gcgttatgcc acaaactaaa ttcgtggtta
     4861 aaaaagccct atctttagga ctaaaaccta tagttgtaat caacaaaatc gacaaaccag
     4921 ctgctgatcc tgaaagagta atcaacgaaa ttttcgatct ttttgtagct ttagatgcaa
     4981 acgatgagca acttgacttt gctatcgttt atgctgcagc aaaaaatggt tatgctaagc
     5041 ttgatctaaa cgatgaaagc gacaatatgg agcccctttt taaaaccata ctcgagcgcg
     5101 ttccagcacc aagcggcaca aatgataatc ctttacaact tcaagtcttt actttaggat
     5161 atgataactt cgtaggtaaa ataggcattg ctagaatttt caatggggtt gtgaagaaaa
     5221 accaaagcgt aatgcttgca aaagctgatg gcaccaaagt aaatggtaga atttcaaaac
     5281 tcattggctt tatgggctta gaaaaaatgg atattgaaga agcaggaagt ggagatatcg
     5341 tagctatagc aggttttgaa gctttagatg tgggtgatag cgttgtagat ccaaacaatc
     5401 ctatgccact tgatccttta cacattgaag agccaacttt aagtatagta ttttctgtaa
     5461 atgatggccc attggcagga actgaaggaa aacatgtaac ttcaaacaaa atcgctgaac
     5521 gcttagaagc tgaaatgaaa actaatatcg ctatgaaata cgaaagcaca ggcgaaggca
     5581 aatttaaagt aagcggtagg ggcgaacttc aaatcactat tttagctgaa aatatgcgtc
     5641 gtgaaggttt tgagttttgc atgggaagac ctgaagttat cgtaaaggtt gaagatgggg
     5701 ttaaaacaga accttttgaa catttagtta tcgatgtacc tgaggaattt agcggtgcag
     5761 tgatagaaaa acttggcaaa agaaaagctg aaatgaaaac catggcacca acaggagatg
     5821 gacaaacaag acttgagttt gaaattccag cacgcggact tataggtttt agaagccagt
     5881 ttttaaccga tactaaaggc gaaggcgtga tgaatcatag ctttttagaa ttccgtcctt
     5941 ttagcggcgc ggttgaaaag cgtaacaatg gagctttaat ttctatggaa aatggcgtgg
     6001 ctttggggta ttctttgttt aaccttcaag agcgtggagt gcttttcata gagcctcaaa
     6061 ctaaagttta tactggtatg attataggtg agcactctcg tccaaatgat ttagatgtta
     6121 atcctatcaa aggaaagaat cttaccaatg taagagcgag tggaagcgat gatgcaatca
     6181 agcttgtgcc acctagaaaa ttaagccttg aaagagcttt agagtggata gaagaagatg
     6241 aacttgtaga agttacacct caaaatgtgc gtgttcgcaa acgctatctt gatccaactc
     6301 aaagaaaaag aatggaaaaa gcaaaatctt aatggattta aaaagcttag aaaataatag
     6361 actttatata cttaaacgct taggaatctt aaaattccta agcattatcg aagccttact
     6421 tgtaggtttt ttagcctttg tttttataag agatgcctta atcgcagtaa ttttagctgt
     6481 ttttgtgggt gtttttttct ttcgttttat agccaaaaaa ctaaaactcg cacaaaaaga
     6541 attacaaatt aatgctttaa atttattttt gcgtcgtttt ggagcgaaat ttaaaaagca
     6601 aagtttaagc caaaaagact ttttaaaatt aggacttaca aaggatttga aagaatttaa
     6661 aagtcaaaac tgctttgaat ttaaggattt taaaatttat gatattcagt ttttggacga
     6721 aaataaacgc tttttttgcg gaattttgct cgaaatttta agtgcaaaca aaaatcctag
     6781 ctttgaaaat gaagagcaaa tttatatcaa acttcaagat aaaaatttca ctttaaatca
     6841 tgttttttct aaagaaaatc attatcttat cgccactcta acaaatcctt ttttcataga
     6901 cttaaaagaa agtctagaga aaaatttcaa aaatttagaa aacaatctca agctaataga
     6961 agaaaaaatc atcaaaattt aatcctcatc tttagccaaa ttttcaagac ttttaagccc
     7021 ttcttcgcct atcaaattcc cgccttgcaa gtcgctaaat atagcattta aagaactcac
     7081 tatggcagta gaattaaagc ttaaattttc tatggctctt tctctttttt tccatatatt
     7141 ttgcaaggct cttttttctg cttctagctc ttctttcata ttttgataag ttttgagtat
     7201 gaaggtgatt tgagtgttaa attccttaga attgaggtat tcgtataaga tatgattttt
     7261 ctcatctttg ttttgtaaag catttttgag cttgcaagca ttgactatgt tttctctaag
     7321 caccgccaaa acgcctttaa attcagcaaa agtgcagatt aaaatcccct ctttaaaatg
     7381 tgttttttgc ttgtctttag gcatggtttt ggtgattaaa accgctatat cacttttagc
     7441 ggctatgctg tcaagcttaa gcttgtcgat ccattcttta ttaaactctt tagtgcgttt
     7501 gctctcatac aaaatactac cgcaaatatt gccaaagctg tcttttacga tatgcaaaca
     7561 atccgcccca tttactccct ttggcacttc ttttacctca tcgccgatgt attcgttttg
     7621 gatatattct tctatgagta gttctgctgc ttcgccttgg agttgctgtg agccttgctc
     7681 tatcctgcgt tgtgcgtcct ctagcttttg agctacgctt ttaaaatttg tttccaattc
     7741 tttgtattta agatcttgct cttgagtgct tttttgaaat tcaagacgca ttttttctct
     7801 ttcaagctct agttttttgc cttcttgttc tttaaattct ttaaacgcct cttctttaac
     7861 ctcaaattta agtctttctt cgttttcttt ttgctctctt tttagctttt cattttcagc
     7921 ttttatgctt aaaaattcgc taagttcttt gctctttttt tctaattctt cttgtatgac
     7981 tttcatttca ttttcatgct ctttgttaaa tttctcgctg aattcttttt ggaaattttg
     8041 cttttgtata agaagttctt gttcaaattt ttgcttttct aaaagaagct tttggcttac
     8101 ttgctcgttt atgagttttt cttgttctat cttttgagtt tttaaatcat ttaaagcttt
     8161 ggtatattca gctcttttag catttacctc atcatcaaat tctttttttt gttttagcat
     8221 ttcttgctta gctttatcta aaatttgagc atataaagca gtgctaatat cgataaaact
     8281 tccacaactt gggcatttga tttgttcatt ttggtttaaa ttttgcataa aatttcctta
     8341 gaatttttcc ctaaatttaa catagaaaaa caaagattat tctaagattg acttgttaaa
     8401 atcattcttt tagaataatt aggattacaa atgcaaaaac acaccaaaat tcacggcttt
     8461 gctaaattta aacttatcat tatccttgct ttgatgtcaa gcatagcacc gctttctaca
     8521 gatatgtatt tacccgcact ttctcatgtg gagcaaagtt ttcaaactaa ttctttttta
     8581 acccaactta gtatcgcaag tttttttatc gcttttgctt taggacagct tatatatggg
     8641 cctttaagtg atatttttgg gcgtaaaatt ccagctttgg tggggatatt tttcttcatc
     8701 gtttcgagtt tgttttgtgt gattatcgat gatatttatg cttttatcgc tttgagattt
     8761 tttgaagcac ttgggggttg tgcaggtgtg gttatcgcaa gggctattgt caatgacttg
     8821 tttgagatca aagaagctgc agggattttt gctttgatga tggtttttag ttctcttgct
     8881 cctatgcttt cgccaacttt tgggggaatt ttgctagagt atttttcatg gcatagtatt
     8941 tttgtgactt tgtttgcttt gggaatttta ctttttttga tgatactttt tggtttaaaa
     9001 gagtccgcac ctcatcttaa aaacaaaaaa ttttcccatc atgaagcgat gaaaagctac
     9061 aaatttgttt taagcgataa acgcttttta gtttatatac tatgtgcttc ttttgctttg
     9121 gcggcgatgt ttgcttatat cacaggatca agctttgttt ttacgcagtt ttttggctta
     9181 agtgagcaaa aatttgcttt gctttttgga gcaaatgctt taggttttgt catctgtgca
     9241 aatataaatg cgagattggt tttaaaatac gaaagcgaaa aaattttggc aaaagctttg
     9301 atgataatgt ttatatcgac tgtgatttta cttgtaaatg ccttttttca cccaaatttc
     9361 ttgctttttg aacttagtat ttttacaagt atcgctatgc ttggtttcat cgcacccaat
     9421 accacgactt tggctatggc aaggtttaaa gaacatagcg gaactgcttc tgcggtgctt
     9481 ggaacggtgc aatttggttt tgcagggctt atttcttttg tggttggggc tattaacgca
     9541 aatacgccga taatccttgc ttttgtaatg tgtgcttgcg tattggttgc aaatatgata
     9601 tattttctaa tcaaaataaa ggagagaaaa tgaaaacaaa taatatcttt atggctttag
     9661 ccatagtttt agcaagtttg attctagctt ttggatttaa caaggcttta agcgatttta
     9721 aaacacttga aagaagtgta agcgtaaagg gtttaagtca aaaagaagtc gaagcggata
     9781 ctttgatact tcctataaaa ttcacaagat caaacaacaa tcttacaaat ttatacgaag
     9841 aactagaaca agataaagaa aatatcatca aatttttaaa agaacaaggc gtaaaagagg
     9901 atgagatcaa ctacaactcg ccaaatatca tagaccgttt aagtgatcct tatagcaacg
     9961 acactcaagc tgcataccga tacataggca ctgcgaattt actcatctat actcaaaatg
    10021 taaagcttgg aaaaagcata ctagaaaaca tttcaagtct tgcaaaattt ggtatagtaa
    10081 caaaaatcga tgattatgat atagaatacc tttacacgaa gctaaatgag ataaaaccac
    10141 aaatgataga agaagcaacg ctcaatgcta gaaatgcagc gataaaattc gcacaagatt
    10201 caaacagcca tctaggcaag ataaaaaagg cttctcaagg acaatttagc atcagcaaca
    10261 gagataaaaa caccccttat atcaaaacca taagagtggt ttctactata gaatactact
    10321 taaaagactg atgatgaaat ttcaagctaa gctttaaggc ttagcttggt actatggaat
    10381 tttttcgtgc ggttttttgg agcgagaata tacaaagcaa aagtataatg ctatataaaa
    10441 cactagtgga ttttatggtg ttttctgtaa tcttgtcttg atttatagtc tttaaaagtt
    10501 ctgtatattt ttctcctaaa acttccttgg ttatatttga atttacatcg ttttaatttt
    10561 aagtttattt ttaatgccta aatttatcaa ctgggctaag aaaaaaaatg cttcccagcc
    10621 tatttacgaa cacgctccgc aaaatcatca aattaaatct cacactccaa ctatgggagg
    10681 ggttattttt gtattttgtg cgatttttgc tagtttgctt tgcattaaat ttgataattt
    10741 atttgcactt atgggacttt tatgcttgat tagcttttgc tttatcggcg taattgatga
    10801 tttaggtaaa attcttcaaa aaaataatca ttcaggttta agccctaagg ctaaaatgtt
    10861 tggcttaatt ttcgcttcat ttttgtgcct agctccttta tattttagcg gaattttgag
    10921 tgctgatttt tacatacctt tttacaaata tccccttttt aatatgtata tttttgctct
    10981 tttcttttgg attttagtgc taatctcaag ctcaaatgct gtcaatttaa cagacggctt
    11041 agacggactt gcgaccgtgc cttctatttt ttccttagcg actttgggcg tgtttttgta
    11101 tttaagcggg aatttaattt atagtgaata tctctttcta ccgaaaatca atggcttagg
    11161 tgagttagtc gtcatttgtg ccgctttaat cggtgcttta atgggctttt tatggtttaa
    11221 ctgctatcct gctcaaattt ttatgggaga tagtggcagt ctcgcacttg gtggctttat
    11281 aggcttttta accgtagtaa gtaaaaatga aattctactt ttgctcgtag gttttgtttt
    11341 tgttttagaa accatttctg tcattttgca ggtgggaagc tttaaaattt gggggaaaag
    11401 ggtatttaaa atggcaccca ttcatcatca ttttgaaaaa gtcggctggg tagaaaataa
    11461 aatcatagtt cgtttttgga tgatagctct actttctaat ctcctcgctt tagcctccct
    11521 taagttgaga taagtgagta aattcgtaaa gtttcattgt aaatttcgtt agatttaaaa
    11581 caaaatttca tcattttaat gttatacttc tcacttaaaa cgacttatta aggagaactt
    11641 gtaatgtcaa attctacaaa aacctttatc attgtagctg atattatttt attcatcgca
    11701 ctgcttgctt tgttaccttt tgaaacaaaa gttaatcaag gcttggctat tttagcgttt
    11761 atcgcagtct tgtggcttag tgaggccttg catgttacca tcactgcgat tttaattccc
    11821 attttagctg ttattatggg cttgatgccg actaaatccg ctctacacgg ctttgccgac
    11881 ccaaatatct ttctcttttt tggcggcttt gccttagctg ccgctatgca ctttcaagag
    11941 cttgataaaa tcatcgctca aaggatactc atgctagcta gaggtaattt tgctctcgcg
    12001 gcactttaca tcttttttac aactgcattt ttatcaatgt ggatgtcaaa tactgccaca
    12061 gctgcaatga tgctccccct tgctataggt atgctttcac aacttgacta cgaagaaaat
    12121 aaaaatactt atttttttgt gcttttaggt atagccttta gtgctagtat aggcggtata
    12181 gggaccctag taggaacacc tccaaatgcc atagtcgcga caaatttaaa tatcactttt
    12241 gcacaatggc ttcaatatgg aattcctatc gttatcattt ttatgccatt aatgatactt
    12301 gttctttatg taacctttaa gccgaattta aaatttcaaa tcaacactga cctagagcaa
    12361 aaaattccta tggatactca aaaatatatc accctaatca tctttgccat tgtggctatg
    12421 tgttggattt ttagttctta tattaatcct tttgtttcaa atttgttagg atttgagaaa
    12481 aaaatcgcca attttgacag cgttatcgct atattggctg ctgttttagt ctgtgctttt
    12541 agagtagtaa gctggaaaaa agtgcaagaa aataccgact ggggagtttt aatgctcttt
    12601 ggtggtggaa ttacactaag ccttgtttta aaagatagtg gagcaagcaa aattatggct
    12661 gatggcatca tcagtttaat cgctggagga catttatttt taattgggct tttagtttct
    12721 ttatttattg tatttttaac agaatttacc tcaaataccg cttctgccgc tcttttagtg
    12781 ccacttttca tctctatggc agagtcctta ggagcgccac ctcttggttt agcactcatc
    12841 ataggcatag gagcaagctg tgcttttatg ttgcctgtcg caactccgcc aaacgctata
    12901 gtctttggca cgggctacat taagcagtct caaatggtgc gtgtaggaat ttaccttaat
    12961 gttctttgtt ctatcatcat tgctttaatg gcatatttct tttggcttta agcatcttgt
    13021 ctttacaaga tgcttacctt aatcgatttt aagcacactt aaaaaggctt cttgcggtaa
    13081 atgcacctta cctatggctt tcatacgctt tttgccttct ttttgctttt ctaaaagctt
    13141 tcttttacgc gttatatccc cgccataaca tttagccgtt acatttttgc ccatagattt
    13201 gacattttca cgcgctatga ttttattgcc tatactagct tgaatcgcca cttcaaaaag
    13261 ctgtcttggc actatctcct tcatcgcttt gacaagttcc ctacccttac ttaaagcctt
    13321 agaatttggc acaataatgc ttaaagcatc gacaagaatc tctatatcaa tttcatctcc
    13381 atgataaact attcgtttat ctttgttatc tttttgtata aaaataatat tttccttatt
    13441 aaccattctt gcaatctcag gagtatgtgt tgtaattaat atttgacgcc ctttgttctg
    13501 tgctaatttt tttaaagact caataattat tctttgatag tttggatgtt gcgatgtttc
    13561 tggttcttca attgcataaa tcatattaga ttgatgcttt ctttcggcat cttccaaaaa
    13621 gaaacttaat aaaataacct tttaacacca ctgcctcttt tattaaatga tactccattg
    13681 tcgcttttaa attcatagct aaataaagag cttaactctt ttgaagttat atttgtgatt
    13741 tgggtaattt cgttatcttt atctgtattt gttctatcag ttttaaataa taagaattta
    13801 ggcatttttt cctttaattt gttatatata ctaacaatat cagtttcttt tgtggatata
    13861 tctatttctt gttctttaaa acttaagctt tcttgtgaaa ataaaaagtt ccttatttct
    13921 tttttaatat tttgattaac ttcagactct ttggagagta attttcttaa atcttgaatc
    13981 tttaatgtga taagcggttt ctcccaattg gttggataat cacaaacaat ataagtttta
    14041 cttaactttc ctttttccca tattttttta atttgtagca atttctcttg atttaatcaa
    14101 tactcactct ctaaagatgt ttgtgttctt tcgctttcac tagcatcaat attaatctgt
    14161 ctctgtggtt caacctgaaa aaacaagtaa tactaaattt attctcactt gaattaatat
    14221 taacatcatc ttctaaagcc ttattatttt caaaaaatat atccaacgca tcaaataatg
    14281 tcgattttcc tacatcgttt tttccaataa ttacacctaa atctgaaaaa ttaaattctg
    14341 tattttcata acttctaaaa ttttcaatct tgcattttac taatttcatt ttcactcctt
    14401 gttttctatg atttttatct catcttcggt gagattataa agtttataaa ccaaagaatt
    14461 gattttattt tctagttctt gggtatttgc gtttttgttt tgttctttgg cttttaaaat
    14521 tccatcgact aaatttataa gctcatcagc taatttttta tttttagaat ttgtatccac
    14581 tatgggaata tttaacaaag gctctttgtc gatttgataa ttattgcctt gcatttttcc
    14641 tttatgcttt agccaaaatg cgacaagctt tgaatttaaa atagcagtta aatatttaac
    14701 attaattctt tgagttttaa taacatttag acttaacatt acataggctt cattgtttaa
    14761 atatgaaaag attggctcta tacattttct tacacttact attttttctc cactttcaaa
    14821 aaacctctca tctcttgccc aatgcaaatg ataaaaatct aatcttttat ttaaattttc
    14881 tcttctatta ttcataatag atctaaattt ttgaagatgt ttgattatag taggaatatt
    14941 ttcttttttg ctattatttt ttgtggtata tattaattgt tttgagttat ttttgttaaa
    15001 ataatatttt ccaaaatgct caacctcgta caaaggtttt aaatatttct tttcatactc
    15061 acaaacattt aaaaagtcct tttctatcac aaaaacacca tcacctactt taatcccttt
    15121 agataccatt tcatcgctaa tatttctttt tgtaattata tctggattag gtactatccc
    15181 ttgtgcgact tccctttctt caagataaaa tttcccatat ttttgaattt tattgaaaag
    15241 ttcttcatag tcgctttttg tgaaattcaa agttttatct ataaattttt ttggagttaa
    15301 atttatgctt aaaatttcat tgttttgggt tttttcattt tttaaaagac ttagagcatc
    15361 ttcataaatt ggagtttggg ttgtgatttt agcaaaatga aattcgtaat ttttaggcgg
    15421 ttttattttt tgaaattgca ttatcatagt ttgtatgctt gcagaatcaa acaccataaa
    15481 agaactaaaa tcaacaaggc ttaaaatttg agattcttct aaaactatat tgcgtagttt
    15541 tttagcccct gaatttgtaa cccaattatt tgtagcgata aatgctaaat atccattatt
    15601 cttaagtata tcaaatccac gccctacgaa atgataccaa atatccattt ttccttgata
    15661 agttcttaac ttttttgtat tggtaaaaag atctttatta tcattttctt ttatataagg
    15721 tggattgcca ataattagat caaagccttt gaaatttcca tcatcgtcca aaatttcagg
    15781 gaattcaaaa cgccattcaa aaggatgatt gctttctagg ttaaagatat tgtcgtattc
    15841 ttttttaaga tttgcaaatt cttttatggc tactttttca tcaaaactga attcaaacat
    15901 atttttagaa aaaaagcttt taaatttttc atcgtgatgt tcatcggcta aaaaatcgcc
    15961 gtatttttta gaatactcgt ttgccccatt tgtgagctgt ttgatctctt tgttaaattt
    16021 atctttcaaa caaaaatttt taaagctttc ttggagattt tttatttcct tggcaatgag
    16081 atttttatct gtgtaaaagc cttctttata gtcttttact atgcgtttgt atttgctcat
    16141 acgttctttg atgttagggt agtggcttag acttttgcct gtttcaaagt aagataccaa
    16201 agaatttccg cattttatgt ttatatcgat gtttggcagg gttttaagat cgtgataatt
    16261 ctcatcatca aagctttgat aaaaactatg ttttaaaagc tctatccaaa gccttagctt
    16321 ggtgatctcg catgagttag ggttgatatc gacgccaaaa aggttgtttt ctatgatgtc
    16381 ttttttggtg tgaaaaagtt cttgctggat aagatgggct ttatctttag gcgtgcttgg
    16441 gcgtttatac tctataaact cgccttttct acccgtgatg agaatttcat cgttttgcac
    16501 ttctaggtaa aactcctcat caaaaagatt tagctcatca taaatgctta acataacatt
    16561 taaagcagaa accaaaaaat gcccgcttcc caccgcagga tcgcaaattt ttatagagtt
    16621 taaaagctct ttttgtgctt ttttatcttc ttttcttaaa gactttctta gttcgcttat
    16681 atctttagca tcaagatcaa attgggtgtt gaatttatca agcacaactt ttgtgatgct
    16741 ttctttgcac atataagaag tgataaagct tggcgtgtaa aagcttcctt ctttgtagcc
    16801 attgagtttt tcaaacacat ttcctaaaac gcttgagctt atgagttctt tttggcttaa
    16861 aatttcgctt tgctcatcat cgctaccaaa atcaaagcta tccaaaaatt caaacaaata
    16921 ctccaaaagc cccacttgtc cttttttagt cttgcatttg tcatctttta gcaccgtgtt
    16981 tttgtagtag ttaagtttta aatcattgtt taaattcgaa atttcaagtg tgttttctat
    17041 gctttgtttt tcaaacaaag aagaattcaa gtaaggcagg taagcaaatt cgcttttctt
    17101 tcgtgtgctt ctttctttgg ctaaaatttc aa
//
LOCUS       DARAII010000024        16983 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.024, whole genome shotgun sequence.
ACCESSION   DARAII010000024 DARAII010000000
VERSION     DARAII010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16983)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16983)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16983
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.024"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..377)
                     /locus_tag="SB143_000693"
     CDS             complement(<1..377)
                     /locus_tag="SB143_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HEF9749249.1"
                     /translation="MKLVKLSLVAALAAGAFSVANATPLEEAIKDIDVSGVLRYRYDT
                     GRFGKDLNLENANLNSSKQEHKYRAQINFSGAIADNFKAFVQLDYNAKDGGYGANSVS
                     NTKTSLNVRQLYLTYTNEDVATSV"
     gene            complement(661..2004)
                     /locus_tag="SB143_000694"
     CDS             complement(661..2004)
                     /locus_tag="SB143_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEF9749250.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCVAMILIGIPVILAENVIGRKSMTNSVDAFKGKWKFVGYMGLLGSFGIMAYYMVLGG
                     WVFVYIFELIIGNFNLSHTITKDFTEYFFNEKISFNPLGVGIFTTLFVLINYIILRRG
                     IIDGIEKSVKFLMPLLFICLILVVGRNLSLEGAINGVKFYLTPDFDKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLSKNENMAKTAIYTGVLNTLIAVLAGFMIFPALFAAGL
                     EPDKGPSLVFQTLPIAFSHIHFGTIICILFFILLLIAALTTSLPIYQVIISVLEEKFK
                     LSKKTAINLTLGSIFILGNIPCILTYGPWRDITLVKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWVLGKEQSIKELSNEGKLKSVGFKIWFYYIKFIIPLIIFAIFIYGITN"
     gene            complement(2055..2723)
                     /locus_tag="SB143_000695"
     CDS             complement(2055..2723)
                     /locus_tag="SB143_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEF9749251.1"
                     /translation="MKLKSLQIGHIKDYKGFRSAFIKDLYLEEVDIDFLGILNDNIAD
                     TKHHGGKNKALFANSYHNYGLWENFLGKKLACGMMGENLTLENLHEQNVCIGDIHRFE
                     NAILQVSEPRKPCVKISKVHQNPNFTQEIFKTGLSGWYYRVLEGKKIHAHSKIELIEK
                     NPINLSVLELNHLFYNPHQALKQNPSLLEKLSKLDTLISQNWHETIQKRLKNTYDLDY
                     MQNL"
     gene            complement(2720..4420)
                     /locus_tag="SB143_000696"
     CDS             complement(2720..4420)
                     /locus_tag="SB143_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEF9749252.1"
                     /translation="MRFIFTLLFTCYFLFASVLSLNEAFEVKSSSYDSAVSIDIKLGK
                     DIYLYSNQLKLYLNQNDISSLINLPPSTQRLNEKVYYQDLNLALPNLLLERFVQNQNN
                     QIKLQFQGCSEQGLCYNPQTWYFDLKHKDNKFEISAPYKEKQKTLSAKSEESMIANFL
                     ATDNLFWILLSFLGYGLLLSLTPCILPMIPILSSLIVAKSETKFSKKHSFFLSFIYVF
                     FMSLAYAIAGVIASFLGASVQGLLQKPSVLIFFALIFVLLALAMFESFRFELPLKFQN
                     FLHKKSEKGKGVLGIAIMGFLSALIVGPCVAAPLTGALIYIANTGDVLLGASALFIMS
                     FGMGIPLLFIGLGLGFLKAGAWMQKVKIFFGFVMLAMAIWILSRIIETRYILIAFGIL
                     GVFFSVFMGIFEQAFNAVAKIKKSLLILVLAYSLSIFLGGIFGAKNFLNPLNLNQNMP
                     LNSSKLNYNFINDLNTLQKEIKTSTRPIMFNFTASWCENCKLLDELTFSNERIQEKLK
                     NFHLIKIDLTQNSDKDLEIIKEFGVFGPPVLIFFEKGKENLRITGFISAHDLLQKLEK
                     "
     gene            4515..5396
                     /gene="ppk2"
                     /locus_tag="SB143_000697"
     CDS             4515..5396
                     /gene="ppk2"
                     /locus_tag="SB143_000697"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HEF9749253.1"
                     /translation="MQEKVPAKIQEETKKDEIYVSVKKKKSTIEYEKDLKNLQIELLK
                     FQNYVKAKGLKVLILIEGRDAAGKGGAIKRLIEYLNPRGCRVVALEKPSDVEKTQWYF
                     QRYVTHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSNLM
                     FFKFYFSVSKEEQKKRFEKRRIDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVDYADKKIGDFSKIDQDLVRSGEEEIRKMEAN
                     LEKIDNKKADEKIKDLD"
     gene            5401..6591
                     /locus_tag="SB143_000698"
     CDS             5401..6591
                     /locus_tag="SB143_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEF9749254.1"
                     /translation="MLERVKNLSDKYYEKIVNLRHQIHMHPELEFEEENTARLVCEIL
                     DEYGIKYEKNIAKTGILASIEGKKPSTKKAQCVLLRADMDALPVQEETNLSYASKING
                     KMHACGHDGHTAGLLGAVLILNELRDEFSGTIKFMFQPAEEGSGGAKPMIEAGILENP
                     HVDAVFGCHLWGPLLENTAQIVSGEMMAGVDVFDLEFIGKGGHGAHPHTTIDPIVMAS
                     KFVSDVQCIISRRLRPVDAGVITIGKFHAGTTFNVIPQNAILQGTVRFLSDENQKLLQ
                     SSIENTAKAVALEFGGDFKLDYKREYPPLINDENAAKIARKAFGKVLGEQNIISVAKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLKNPTLHHSSTFCWEDENLKVLMQGDSMMALE
                     FLNS"
     gene            6673..7830
                     /locus_tag="SB143_000699"
     CDS             6673..7830
                     /locus_tag="SB143_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEF9749255.1"
                     /translation="MKNRVVLIVVILALFGVGAYFIFFNDNEKITYLTQKVKKIDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGSHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIASKQYQREQKLYAAKASSLENLEIQKNNYYSLKASVAELN
                     AQVIQLEITLKNAKKDLDYTTITAPIDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEIKMEIAEADVNKIKIGTELEFSLLNDPQKTYRASIASIDPADTEVSDSSSSYSSSS
                     SSSSNAIYYYAKFYVQNKDNFLRIGMSIQNEIVIASVKDVIAVPTYAIKNDAKGYYVE
                     ILQNQKAVKKYVKFGIKDSINTQILEGVDENEELIISSSADGLVPEMKLRF"
     gene            7830..9755
                     /locus_tag="SB143_000700"
     CDS             7830..9755
                     /locus_tag="SB143_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749256.1"
                     /translation="MLFLKNICKNIGENSILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDMPSSGSYIFENYEVTKLNSDEKARLRREKIGFVFQRYNLLSLLSADRNVSL
                     PAVYAGKSIHERSQKAKELLENLELVHKLNSKPNELSGGQQQRVCIARALMNGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNAQGHTIILVTHDPKIAAQAKRIIEIKDGEILSDT
                     KDGNFNPKIILKAMPKEKKTFNLFKNQIFECFKIAYSSILAHKLRSILTMLGIIIGVA
                     SVVCVVALGLGSQAKVLESIAGLGTNTIEIYPGRGFGDLRSGRTRLNFSDLQTLRTLE
                     YLDAVDAHSSTSGIATYTNISLSARAEGVGVNNFAIEGLKLQVGRILNNEDIETNANV
                     AVLDFNAKKNLFPRQKSEDVLGRVVIFNSQPFKIIGVLQKDTEKPIEDNVVRLYMPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQRDFFTFNSDTFKQAIT
                     ANKRTTTILTASVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICSMGAILGVLLSVFVIFGFNTLSTDFPMILNAYSVLSGLLSSVLIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            9757..11121
                     /locus_tag="SB143_000701"
     CDS             9757..11121
                     /locus_tag="SB143_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEF9749257.1"
                     /translation="MKNLLSILLAFFLSACGVKLSLPKEPIMSEESFKDLNLTYDWYK
                     AYDNAKLNEFLNFVLLNNSDINIARNTLLTALARADLIDYDFYPTLSANLGLSGDKNL
                     NSGAQSKKFSNGLNLSYELDIYGKIRDSSSASEFSAKASAYDLENLKISMINTALNNV
                     FELAYFNDADNLLKEYLANLEQMRELYAYKLELGKIEELDLLNIEQNLLRARQNLLRN
                     EQNRNLLIKNLQDLIGKQEGFAYIDYFKALTLSDFKNLNPNFNIPLEALVYRPDVRSK
                     LNTLKSAFKDYTSVQKSILPSISLNGALNGSDEQFDDSFKFEVLSGNIKISLPFLDYG
                     RVKQNIKISQFDYESALVNYEQSLQSAMNEFALNYKDYQSNTMLVQILKDTRLKQELI
                     TQAYWEKYNLGKSELKDYLDASNALNSAKQDLLGARFNLLKTINSYYQITALSYDERN
                     LEMP"
     gene            complement(11192..12361)
                     /locus_tag="SB143_000702"
     CDS             complement(11192..12361)
                     /locus_tag="SB143_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749258.1"
                     /translation="MQIKQFKAILLILIFSINLYANNTNHTIDEILSQTKNKSALSNY
                     ASKKDLKLLEQKLKDHKNIGIRIYGDSHTAADFFPRVIRGYLIKSNSIGFAYPLQPKY
                     QQNLNLDYSYKDYEILNSRNTDAAGIDFPLGGIIAKAKEKGAKITLDTNLDKKNFKVG
                     FVFKAPNNTNAFSIKDAQNKSYELRSVANKWSYKEYELVFPLQISALQKNAQLGGYFI
                     TSKEDNAYLDTIAINGAKSDLWMSWNKKVSEQELKLLSNDLILLAYGSNDALFKGFEK
                     NKFKKNLKDWIHTLKTYNKNALIMLVSPPTVVKKQGKKYTLAPDFFAIRQALYEVAKE
                     EKTLLFDMHQFMQDSGGKNKWIEQKLSLQDVHLTIKGYELMAKKLLDDLKKYVHY"
     gene            complement(12351..13331)
                     /locus_tag="SB143_000703"
     CDS             complement(12351..13331)
                     /locus_tag="SB143_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEF9749259.1"
                     /translation="MKIIRFFFILIIVFILVCLVMNQSIFSYIEQKYHFAFYPKNDIL
                     QEANGFKNKLEQIRAILSNEPLPQNIEENIMVQEDMDELNASNDFIDKNTTIEDIQQT
                     EDENVSFIDNTKLEVHKGDEFLFIGDSLMQGVAIALNRDLIDLGLKANDLSKQNTGLS
                     YKSYFDWAKATKEAFAKNPNIKYLVVLLGANDPWDIKKGGVYHRFGSDSWIDIYTYRV
                     NEIINIAKQHHAKILWFEIPPVKKNELNEKIQILNKIYSEEILKNKQIFINTKLFFSV
                     NDEFSTYIKNENNKSIKMRTDDGIHFTSNGAKEMSELLLQHITIKEENAN"
     gene            complement(13332..14708)
                     /locus_tag="SB143_000704"
     CDS             complement(13332..14708)
                     /locus_tag="SB143_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEF9749260.1"
                     /translation="MTYFSLEFSILMIVFFAIYWAFKDNYKIQNILILAFSYLIYILI
                     NPYFALILFIYTFFIHFFALLIFVRRKRYIFATCITFIILNLCFFKYFPNIKGSLDQV
                     LSFLGLDFLNIELILPIGISFYTFASITYLVDVYKKHHLESFLNLATFLSFFPTLLAG
                     PIMRSAFFFEQAYQKREFKHANLIIILLIFGIVKKVLIANYLGIYAKNILDFPQSYNF
                     IQLLSAIYAYAVQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLAKNLKEFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTIANILIAFILSGLWHGSTLAFGVWGLLHGLGIVF
                     IHLLALSKFSLQKIPALGRILTFQFVCFTWIFFYYNKNLEDALEYFKACYNNFFQIPS
                     YNDIYMLVSFGVLFMIYPLFINFKEYCVKILNLTPFLLKPFIITFILLLVFAFMPNGI
                     PDFIYSSF"
     gene            complement(14760..15260)
                     /locus_tag="SB143_000705"
     CDS             complement(14760..15260)
                     /locus_tag="SB143_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="cytoplasmic iron storage protein; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin"
                     /protein_id="HEF9749261.1"
                     /translation="MLSKKVVDLLNEQINKEMYAANLYLSMSSWCYENSLDGAGLFLF
                     QHASEESEHARKLITYLNETDSHVELKEVKQPEQNFKSLLDVFEKTYEHEQSITKSIN
                     DLVEHMLANKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLISDNGNGLYLADQYIKN
                     LALSKK"
     gene            15599..16594
                     /locus_tag="SB143_000706"
     CDS             15599..16594
                     /locus_tag="SB143_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEF9749262.1"
                     /translation="MKKILALSVASFALAGALNAADLKIAGSSTVYPFTSFVAEEYAA
                     IHNTKTPIVESLGTGGGFKVFCEGITDISNASRAMKFSEFETCKKAGVTDIVGIMVGY
                     DGIVLAQNKANAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTVEELVMSDISKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGLFGYGFLVSNVDKINAADIDGVKADEKNIADGKYDLARSLFIYINAKKNPKEAF
                     EFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            16604..>16983
                     /locus_tag="SB143_000707"
     CDS             16604..>16983
                     /locus_tag="SB143_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEF9749263.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVV"
BASE COUNT         5961 a         2410 c         2996 g         5616 t
ORIGIN      
        1 acacttgtag ctacatcttc atttgtgtaa gttaggtata attggcgaac atttaaagaa
       61 gtttttgtat tgctaacgct attagcacca taaccaccat cttttgcatt atagtcaagt
      121 tgaacgaaag ctttgaagtt gtctgctata gcaccgctga agttgatttg tgctctgtat
      181 ttatgctctt gtttgctgct atttaagtta gcattttcta gattaagatc ttttccaaat
      241 ctacctgtat catatctgta tcttaaaact ccagatacat cgatatcttt gatcgcttct
      301 tcaagtggag tagcgttagc tactgagaaa gcacctgcag caagagctgc tactaaacta
      361 agtttaacta gtttcatgag aattctcctt gtttaaaatt aaataaaacg ctgtaattgt
      421 agcacataaa tctgtagttt tttcttaaaa agcacttaaa ataataaaaa ttctaaattt
      481 ttagagtgga aaatataata aaaatagacc tagcttggta tttactaggc ctatattaag
      541 gagtttttct tatgaatgtt tttcggttcg ttttggaagt ataaatctta aaggtaaatg
      601 agaagtaatc aaacataaaa gataaaaatt tcattctttt atgtttatct ttataaaaaa
      661 ttaattcgta attccataaa tgaaaatcgc aaaaataatc aaaggtatga tgaatttaat
      721 ataataaaac caaattttaa atcccacgct ttttaatttg ccttcattgc taagctcttt
      781 tatgctttgc tctttaccaa gaacccaacc tacatagata cagcaaaaaa aggctgttaa
      841 aacaaataaa atatttccgc tgataaaatc aaaactatcg aaaatatttt ttcctttaac
      901 aagagtaata tctctccaag gtccataagt gagtatacaa ggaatgtttc ctagtatgaa
      961 aatcgaacct agggttaaat taatagctgt ttttttagaa agtttgaatt tttcttctaa
     1021 aacactgatg ataacttgat atataggtaa acttgtcgtt aatgcagcga tgagtaaaag
     1081 tataaaaaat aaaatgcaaa tgatagtccc aaagtggata tgagaaaatg ctataggcag
     1141 ggtttgaaac actaaagaag gtcctttatc gggctcaagt cctgctgcaa aaagtgcagg
     1201 aaaaatcata aagcctgcta gcacagcaat aagagtgttt aaaactcctg tataaatggc
     1261 ggtttttgcc atgttttcat ttttgctaag atgagatgaa agggtgatca tcacgccaaa
     1321 acccagagaa agtgcaaaaa agacttgtcc tagaacatcg atgagtagtt ttggggatag
     1381 aattttgtca aaatcaggcg taagataaaa ttttacacca tttatagcac cttcaaggct
     1441 taagttgcgt cctacaacaa gtataagaca aatgaaaagc aaaggcatga ggaatttaac
     1501 tgatttttct ataccatcta taatgccacg ccttaaaatg atataattaa taagaacaaa
     1561 aagtgtagta aaaattccta cgcctaaagg attgaaagaa attttttcat taaaaaaata
     1621 ctcggtaaaa tctttggtta tggtatggga aagattgaaa ttccctatga tcaactcaaa
     1681 aatataaaca aaaacccagc cgcctaaaac catataataa gccatgatac caaaactacc
     1741 caaaagcccc atatagccta caaatttcca tttgccctta aaagcgtcga cgctgtttgt
     1801 catggatttt ctaccgataa cattttcagc taagataaca ggaatgccaa tgagtatcat
     1861 tgctacgcaa aatactaaaa cataagcacc acccccattt tctcctacaa gatagggaaa
     1921 acgccaagtc gcaccaaaac ctatggttgc tcctgcgacg gttaaaatat aagtaagagt
     1981 gctactccat gtttgtcttt gcatgcttat cctttcaaaa aaattaaatt gtagcctaag
     2041 aatactttaa aaaattataa attttgcata tagtctaaat cataggtatt ttttaagcgt
     2101 ttttgtatag tttcgtgcca attttgtgaa atcagtgtat cgagtttgct taatttttca
     2161 agcaagcttg gattttgttt gagtgcttga tgggggttat aaaataaatg attgagttct
     2221 aggacgctta aatttatagg atttttttct ataagctcga ttttagaatg agcatggatt
     2281 tttttaccct ctaaaacacg ataataccac ccacttaatc ctgttttaaa aatttcttgt
     2341 gtgaaatttg gattttgatg gacttttgaa attttaacac aaggtttgcg cggttcgctt
     2401 acttgcaaaa tagcattttc aaatcggtgt atatcgccta tacaaacatt ttgttcgtgt
     2461 aaattttcaa gggttaaatt ttctcccatc ataccgcatg caagtttttt tccaagaaaa
     2521 ttttcccaaa ggccgtagtt atgataagaa tttgcaaata aggctttatt ttttccgccg
     2581 tgatgttttg tatcggctat gttatcgtta agaataccta aaaaatcaat atctacttct
     2641 tctaaataaa gatcttttat aaaagcactt ctaaagcctt tataatcttt gatatgtcct
     2701 atctgtaagc ttttgagttt catttttcta acttttgtaa caaatcatgt gcactgataa
     2761 aaccagtgat tctaagattt tctttgcctt tttcaaaaaa tatcaaaacc ggtgggccaa
     2821 aaacaccaaa ttcttttata atttctaagt ctttgtcgct gttttgagtc agatcaattt
     2881 tgattaaatg aaaatttttg agtttttctt gaattctttc gttgctaaaa gtaagctcat
     2941 ctaagagttt acaattttca caccaagatg ctgtaaagtt aaacatgata gggcgggtgc
     3001 tagttttaat ctctttttga agagtgttaa gatcgtttat aaaattataa tttaattttg
     3061 aagaatttaa gggcatgttt tggtttaaat ttaaaggatt taagaaattt tttgcgccaa
     3121 agattccgcc taaaaatata cttaaagaat aagccaaaac caaaatcaat aagctttttt
     3181 taatcttagc tactgcatta aaagcttgtt caaaaattcc cataaataca ctaaaaaata
     3241 cacccaaaat tccaaaagcg atcaaaatat atcttgtttc aatgatacga gaaagtatcc
     3301 aaatagccat agctagcata acaaagccaa agaaaatttt tactttttgc atccaagctc
     3361 ccgcctttaa aaagccaaga cctaaaccaa tgaaaagcaa aggaattccc atgccaaagc
     3421 tcatgataaa aagggcacta gctcctaaaa gtacatcgcc tgtgttggct atgtagatca
     3481 aagcaccggt taaaggagca gctacacaag gacctacgat aagagccgat aaaaagccca
     3541 tgatggctat acctagcact cctttgcctt tttcactttt tttgtggaga aaattttgaa
     3601 attttaaagg cagttcaaag cgaaagcttt caaacattgc caaagcaagc aatacaaaaa
     3661 ttagcgcaaa aaagatcaaa acactaggtt tttgcaaaag tccttgaacg cttgctccta
     3721 aaaaactcgc tataactccg gcaatagcat aggctaaaga cataaaaaat acataaataa
     3781 aagataaaaa gaagctgtgc tttttagaaa attttgtttc gcttttagct acgatgagtg
     3841 aagataatat aggaatcatc ggcaaaatgc aaggagtaag tgaaagtaaa agtccatagc
     3901 ctaaaaagct tagtaagatc caaaaaagat tatctgtggc taagaaattt gcaatcatac
     3961 tttcttcgga ttttgcactc aaggtttttt gcttttcttt ataaggggct gaaatttcaa
     4021 atttattatc tttgtgtttt agatcaaaat accaagtttg aggattgtag cataagcctt
     4081 gttcggagca gccttggaat tggagtttga tttgattgtt ttgattttgt acaaaacgct
     4141 caagtagtag gttaggcaag gctagattta aatcttgata atacactttt tcattgagtc
     4201 tttgggtgct aggtgggaga ttgattaaag agctgatatc gttttgattg agatagagtt
     4261 taagttgatt agaataaaga taaatatctt ttcctaattt gatatcgatt gatacagcgc
     4321 tatcataaga actcgatttt acttcaaagg cttcatttaa agataaaaca gaggcaaata
     4381 aaaaataaca agtgaataaa agtgtaaaaa taaaacgcat tgtcatccta ggcttaaatg
     4441 taaaatttgt gattttaatg tgaattatag tttgttatgg taaatttgct ttaaatattt
     4501 tataaaggtt gctcatgcaa gaaaaagttc cagcaaagat tcaagaggaa acaaaaaagg
     4561 atgaaattta tgtttctgtt aaaaagaaaa aaagcactat agaatatgaa aaagatttaa
     4621 aaaatctaca aatcgagctt ttgaaatttc aaaattatgt aaaagcaaag ggtttaaaag
     4681 tgcttatact tatagaagga cgcgatgcag caggcaaggg cggtgcgata aagcgtttga
     4741 tagagtattt aaatcctagg ggatgtcgtg tggtagctct tgaaaaacct agcgatgttg
     4801 aaaaaacgca gtggtatttt caacgctatg taacgcattt gccttctgcg ggtgagattg
     4861 tgatcttcga tagatcttgg tataaccgcg caggagtaga gcctgtaatg ggtttttgta
     4921 ctccacagca acataaagac tttttaagag aggtgccttt gtttgaaaat atgatatcaa
     4981 atagcaattt gatgtttttt aaattttatt tttctgtttc taaagaggag caaaaaaaac
     5041 gctttgaaaa acgccgcatt gatcctttaa aacaatacaa actttctcct gtggatcaaa
     5101 aatctcaaga attatgggat aaatatacct tggcaaagta ttctatgctt ttagcatcca
     5161 ataccccaac ctgtccatgg actatcattt cttcagatga taagaaaaaa gcaaggctta
     5221 atttgttgcg ttttatattg tcaaaagtgg attatgcgga taaaaaaatt ggagattttt
     5281 caaagattga tcaagattta gtaagaagtg gcgaagaaga aattcgtaaa atggaagcaa
     5341 atttggaaaa aatagacaat aaaaaagcag atgaaaaaat aaaggatttg gactaaaact
     5401 atgttagaac gcgttaaaaa tttaagtgat aaatactatg aaaaaattgt caatttaaga
     5461 catcaaattc acatgcaccc tgaacttgaa tttgaagagg aaaatacagc aagattggta
     5521 tgtgaaattt tagatgaata tggcattaag tatgaaaaaa atatagctaa aacaggaatt
     5581 ttagcaagca tagaaggaaa aaaaccaagc actaaaaaag ctcaatgcgt gcttttaaga
     5641 gcggatatgg atgctttgcc tgtgcaagag gaaacaaatc ttagttatgc ttcaaaaatc
     5701 aatggaaaaa tgcatgcatg tggtcacgat ggacacacag cagggctttt aggagcggtt
     5761 ttgatcttaa atgaattaag agatgaattt agtggaacga ttaaatttat gtttcagcct
     5821 gctgaagaag gaagcggggg tgctaagcct atgatagaag caggcatact tgaaaatcct
     5881 catgtggatg cagtttttgg atgccattta tgggggcctt tgcttgaaaa tactgctcaa
     5941 attgtaagcg gtgagatgat ggcgggggtt gatgtttttg atcttgaatt tatagggaaa
     6001 ggcggacacg gagcgcaccc tcatacgact atcgatccta tagtaatggc aagcaaattt
     6061 gtcagtgatg tacaatgtat catttcaagg cgcttaagac ctgtggatgc aggggttatc
     6121 accataggga aatttcatgc agggacaacc tttaatgtga tcccacaaaa tgctatcttg
     6181 caaggaacgg tgcgtttttt aagtgatgaa aatcaaaaac ttttacaaag ttctatagaa
     6241 aatacagcca aagccgttgc tttagaattt gggggtgatt ttaagcttga ttataaaaga
     6301 gaatatcctc ctttaatcaa tgatgaaaat gctgcaaaaa tagctagaaa agcttttggc
     6361 aaggtattgg gcgagcaaaa tatcattagc gtagctaagc ctgatatggg agctgaggat
     6421 tttgcttttt taacgcgtga aagaatgggt gcttatgttt ttgtaggtat ttcaaaggat
     6481 ttgaaaaatc ctaccctgca ccatagttct actttttgct gggaagatga aaatttaaaa
     6541 gtcttaatgc aaggcgatag tatgatggct ttagaatttt taaattctta aaaatatgaa
     6601 tttaaaaatt cacaaaaaat tcactttgca tagatataat tgcgagattt attttttaat
     6661 ttaaggttta gaatgaaaaa tagggtcgtt ttgattgtgg tgattttagc actttttgga
     6721 gtgggcgctt atttcatatt ttttaatgat aatgaaaaaa tcacctatct tacccaaaag
     6781 gttaaaaaaa tagatatttc tcaaaccata gaagcagtgg ggaaggttta tgctaaagat
     6841 caagttgatg tgggtgctca agtaagtggg caaatcatta agctttatgt ggatgtgggt
     6901 tcgcatgtaa aacagggtga tttgatcgcg caaattgata aagataaaca gcaaaatgat
     6961 ttagatatca caaaagcgca gcttgaaagt gccaaggcta atttagaaag taaaaaagtc
     7021 gcccttgaaa tcgcaagcaa acaataccaa agagaacaaa agctttatgc agctaaggca
     7081 agttcacttg aaaatttaga aatacaaaaa aataattatt attctttgaa agcaagtgtt
     7141 gcagaactta atgctcaagt tattcagctt gaaattactc ttaaaaatgc taagaaagat
     7201 ttagattata ctactataac agcacccatt gatggggttg taattaacgt agctgttgat
     7261 gaaggacaaa ctgtaaatgc taatcaaaac acaccgacaa tagttcgcat tgcaaattta
     7321 gatgaaatgg aaataaaaat ggaaatagca gaagcagatg tgaataagat aaaaataggc
     7381 acagagttgg aattttcctt acttaacgat ccgcaaaaaa cctatcgtgc aagtatagcg
     7441 agtatcgatc cagccgatac tgaagtaagt gattcaagtt ctagttattc tagttcttca
     7501 agttcgagtt ctaatgctat ttattattat gccaagtttt atgtacaaaa taaggataat
     7561 tttttacgta ttggcatgag tatacaaaat gaaattgtta ttgcaagtgt taaagatgtt
     7621 attgctgtgc ctacttatgc aatcaaaaat gatgcaaaag ggtattatgt tgaaattttg
     7681 caaaatcaaa aagcggtaaa aaaatatgta aaatttggta ttaaagattc tatcaatact
     7741 caaattttag aaggtgttga tgaaaatgaa gagttgataa taagttcaag tgctgatgga
     7801 cttgtaccag agatgaaatt gagattttaa tgctgttttt aaaaaatatt tgtaaaaata
     7861 taggtgaaaa tagtatttta aaaaatgtta gtttaagtat agaaaaaggt gaatttgtag
     7921 ctattattgg acaaagtggt agcggtaaaa cttctttgtt aaatattata gggaccttgg
     7981 atatgccaag tagtggaagc tacatttttg aaaactatga agttactaag ctaaatagcg
     8041 acgaaaaagc aagactaagg cgtgaaaaaa taggttttgt ctttcaaaga tataatcttt
     8101 tgagtttact cagtgctgat agaaacgttt cattgccggc tgtttatgca ggtaaaagca
     8161 tacacgaaag aagtcaaaaa gctaaagaac ttttagaaaa tctcgaacta gttcataagt
     8221 tgaattccaa accaaatgag ttaagtggcg gacagcaaca acgcgtttgt atagcaagag
     8281 ctttgatgaa tggcggagaa ttgatacttg ctgatgagcc aacaggagct ttagatagta
     8341 aaagtggaat tatggttctt gagattttgc aaaaattaaa tgcacaaggg catactatta
     8401 ttcttgtaac tcacgatcca aaaattgcag cccaggctaa aaggattata gagattaaag
     8461 acggtgaaat tttaagcgat actaaggatg gaaatttcaa tccaaaaatc atcttaaaag
     8521 cgatgccaaa agagaaaaaa acctttaatt tatttaaaaa tcaaattttt gaatgtttta
     8581 aaatcgctta ttcttccata cttgctcata aactccgttc tattttaact atgcttggta
     8641 ttataatagg cgttgcttct gtggtttgcg ttgttgcttt agggcttggt tctcaagcta
     8701 aggttttaga atctattgca gggcttggaa caaatactat tgaaatttat ccaggtagag
     8761 gatttggaga tttgcgttca ggcagaacaa gattaaattt tagtgattta cagacgctta
     8821 gaactttaga atatttagat gctgttgatg cacattcaag tacttcagga attgcaacct
     8881 atacaaacat ttctttaagt gctagagctg aaggagtggg ggtaaataac tttgctatag
     8941 agggtttaaa acttcaagtg ggtagaattt taaataatga agatatagaa actaatgcta
     9001 atgtagcggt gcttgatttt aatgctaaga aaaatctttt ccctcgccaa aagagtgaag
     9061 atgttttagg gcgtgtagtg atttttaatt ctcaaccctt taaaattata ggagttttac
     9121 aaaaagatac agaaaaacct atagaagata atgtagtgcg cctttatatg ccttatacta
     9181 cgctgatgaa taagcttaca ggcgatagaa atttgcgtga aattatagta aaagtaaagg
     9241 atgatgtgag ttctactttg gctgaaaatg ctatcattag aattctagaa atcaaacgcg
     9301 ggcaaagaga ttttttcact tttaattctg atacctttaa gcaagctatc acagcaaata
     9361 aacgcacgac taccatactt acggcttcgg tggcggtgat tgctttgatt gttgggggta
     9421 taggcgtgat gaatatcatg cttgtttcgg tgagtgaaag aacaagagaa ataggaattc
     9481 gtatggcaat aggtgctaga agagaagata tcatgatgca gtttttaatc gaagcagtga
     9541 tgatatgttc tatgggtgcg attttaggag ttttgctttc tgtttttgtg atttttggtt
     9601 ttaataccct aagcactgat tttcctatga ttttaaatgc gtattctgtg ctttcaggtt
     9661 tgttaagttc ggttttaatc ggagttgttt ttggattttt ccctgcaaga aatgcagcca
     9721 atttaaatcc tatcagtgcc ttatcaaagg aataaaatga aaaatttatt gagtattttg
     9781 ctagcatttt ttttaagcgc ttgtggtgta aagcttagct tacctaaaga gcctataatg
     9841 agcgaagaga gctttaaaga cttaaatctc acctatgatt ggtataaagc ttatgataat
     9901 gctaaattga atgaattttt aaattttgtt ttgttaaata atagcgatat taatatagct
     9961 agaaatactt tgcttacagc tttagcaagg gctgatttga tagattatga tttttatccg
    10021 actttaagtg caaatttggg acttagtgga gataagaatt taaattctgg agcccaaagt
    10081 aagaaattta gcaacggttt aaatttaagc tatgagcttg atatctatgg aaagataaga
    10141 gatagctcaa gtgcgagcga atttagcgca aaggctagtg cttatgatct tgaaaattta
    10201 aaaatcagta tgatcaatac agccttaaat aatgtttttg agcttgctta ttttaatgat
    10261 gcggataatt tacttaaaga gtatttagct aatttagaac aaatgagaga gctttatgct
    10321 tataaattag agcttggaaa aatcgaagaa cttgatttgc ttaatatcga gcaaaattta
    10381 ttaagagcaa gacagaattt gttacgcaat gagcaaaatc gcaatttgct tataaaaaat
    10441 ctacaagatt tgataggtaa acaagagggt tttgcttata ttgactattt taaagctttg
    10501 actctttctg attttaagaa tttaaaccct aattttaaca tccctttgga agctcttgtg
    10561 tatcgtcctg atgtgcgctc taaactcaat actcttaaat ccgcttttaa agactatact
    10621 tcggtacaaa aatcaatctt gccgagcatt tctctaaatg gagctttaaa tggcagtgat
    10681 gagcaatttg atgatagctt taaatttgaa gttttgagtg gcaatataaa aatttctttg
    10741 cctttcctag actatggtag agtaaagcaa aatatcaaaa tttcgcagtt tgattatgag
    10801 agtgcgcttg ttaattacga gcagagttta caaagtgcta tgaatgaatt tgctttaaat
    10861 tataaagact atcaaagtaa caccatgcta gttcaaattt taaaagatac tcgtttgaaa
    10921 caagagttga tcactcaagc ttattgggaa aaatacaatt taggtaaaag tgaattaaaa
    10981 gactatttag atgcttctaa tgctttaaat tctgctaaac aagatctttt aggagctagg
    11041 tttaatcttc ttaaaaccat taattcttat tatcaaatca cagctttaag ctatgatgaa
    11101 agaaatttgg aaatgcctta atttgtatcg ctttatctgc taaaatatca agtagataag
    11161 gcttttttaa ttatattgat aaaattaaaa atcaataatg cacatatttt tttaaatcat
    11221 caagcaattt tttggccatt aattcataac ctttaatggt taaatgtaca tcttgcaaag
    11281 agagtttttg ctctatccat ttgttttttc caccactatc ttgcatgaat tggtgcatat
    11341 caaaaagaag ggttttttct tctttggcta cctcataaag tgcttgcctt atagcaaaaa
    11401 aatcaggagc tagggtgtat tttttacctt gtttttttac cacagtagga ggagaaacaa
    11461 gcatgataag ggcgttttta ttgtaagttt tgagtgtgtg aatccaatct tttaaattct
    11521 ttttaaattt gtttttttca aaacctttaa aaagtgcgtc attagaacca taagcaagta
    11581 agattaaatc attagatagg agttttaact cttgctcgct tactttttta ttccacgaca
    11641 tccaaagatc gctttttgcc ccattgatcg ctatggtatc taaataagca ttatcctctt
    11701 tgctggtgat aaaatatcct cctaattgag cgtttttttg taaggcagaa atttgcaaag
    11761 gaaaaacaag ttcgtattct ttatatgacc atttattggc tactgatctt agctcatagc
    11821 ttttgttttg agcgtcttta atgctaaagg cattggtgtt atttggagct ttaaagacaa
    11881 aacctacttt aaaatttttc ttgtctaaat tagtatcaag ggtgattttt gcaccctttt
    11941 ctttagcctt agctattatc ccacctaaag gaaaatcaat acctgcggcg tctgtatttc
    12001 ttgaatttaa aatttcataa tctttataag aataatcaag atttaaattt tgttgatatt
    12061 tgggttgcaa agggtaggca aagcctatgg aatttgattt tatcaaatat cctctaataa
    12121 cacgcggaaa aaaatctgct gccgtgtgag aatctccata aattctaata cctatgtttt
    12181 tatgatcttt aagtttttgc tccaagagct ttaagtcttt tttggaagca taattgctta
    12241 aagcactttt gtttttggtt tggcttagaa tttcatctat ggtatggttt gtgttatttg
    12301 cgtataaatt gattgaaaat ataagaatta ataatatagc tttaaattgc ttaatttgca
    12361 ttttcttcct tgattgttat atgttgaagc aagagttctg acatctcttt tgctccgttt
    12421 gaggtaaaat gaattccatc gtctgttctc atttttatac ttttgttgtt ttcattttta
    12481 atataggttg aaaattcatc attaacgcta aaaaatagtt ttgtattgat aaaaatttgt
    12541 ttatttttga gaatttcttc gctataaatt ttgtttagaa tttgtatttt ttcattgagt
    12601 tcattttttt taacaggagg aatttcaaac caaagaattt ttgcatgatg ttgtttagct
    12661 atattgatga tttcatttac tctataggtg tagatgtcaa tccagctatc tgaaccaaag
    12721 cggtgataaa ctccaccttt tttgatatcc caaggatcat ttgcccctag taagacaact
    12781 agatatttaa tgttgggatt ttttgcaaaa gcttctttgg ttgcttttgc ccaatcaaaa
    12841 taagatttgt aagaaagtcc tgtattttgc ttgctaagat cattagcttt taaacctaga
    12901 tcaattaaat cacgattgag tgcaattgca acgccttgca ttaaagaatc gcctataaat
    12961 aaaaattcat cacctttatg aacttctaat ttggtattgt caataaaact gacattttcg
    13021 tcttctgttt gctgtatatc ttcaatagtg gtgtttttat cgataaaatc attacttgca
    13081 ttaagttcat ccatatcttc ttgaaccatg atattttctt ctatattttg aggtagaggc
    13141 tcattactta gtattgcacg gatttgttct agtttatttt taaaaccatt ggcctcttgc
    13201 aaaatatcgt ttttaggata aaatgcaaag tgatattttt gctcgatata agaaaaaatg
    13261 ctttgattca tcacaaggca aacaagtata aacactataa ttaaaataaa gaaaaatcta
    13321 ataattttca tttaaaaact cgaataaata aaatcaggaa tgccatttgg cataaaagca
    13381 aacactaaaa gcaagataaa agtaattatg aatggcttga gtaaaaacgg cgtaagattt
    13441 aaaattttta cacagtattc tttaaaattg ataaataaag gataaatcat aaaaagtaca
    13501 ccaaaactta caagcatata aatatcatta tagctaggaa tttggaagaa attattataa
    13561 caagctttga agtattctaa ggcatcttct aaatttttat tataataaaa gaaaatccaa
    13621 gtaaaacata caaattgaaa ggttaaaatt cttcctaaag ctggaatttt ttgaaggctg
    13681 aatttgctta aagcaagtaa atggataaat acaataccca agccatgtaa taaaccccaa
    13741 accccaaaag ccaaagtact tccatgccat aagcccgaaa gaataaaagc gatgagtata
    13801 ttggctatgg tgcgaggcat tccttttctg ttgcctccta aaggaatata gatataatct
    13861 cttatgaaag ttgaaaggct gatgtgccat ctagcccaaa attctttaag atttttagct
    13921 agataaggca tattaaaatt cggtggcaag gtaaaaccta acattaaagc aaaagcacaa
    13981 actagatcta catatccact aaaatcgcaa tatatttgca ccgcataagc gtaaattgca
    14041 cttagaagtt gtataaaatt ataagattgt ggaaaatcta aaatattttt ggcataaatt
    14101 cctaagtaat tagcaataag aacttttttc actataccaa aaataagcaa aatgatgatc
    14161 aaatttgcat gtttaaattc gcgtttttga taagcttgtt cgaaaaaaaa cgcactacgc
    14221 ataatcggcc ctgcaagtag ggtagggaaa aatgataaaa aggttgctaa atttaaaaag
    14281 ctttctaaat gatgtttttt gtatacatct acaaggtaag taatagaagc aaaggtgtaa
    14341 aaactaatgc ctataggcaa gataagttcg atatttaaaa aatcaagccc caaaaagctt
    14401 agcacttgat caagacttcc tttgatattt ggaaaatatt tgaaaaaaca taaatttaat
    14461 attataaaag ttatacaagt agcaaaaata tatcgttttc gacgcacaaa gataagcaag
    14521 gcaaaaaaat gtataaaaaa agtgtaaata aataaaatta aagcaaaata aggattaatc
    14581 agtatataaa taagatatga aaaagccaag attaaaatat tttgtatttt ataattatct
    14641 ttaaatgccc aatatatggc aaaaaataca atcattaaaa tactaaattc taaagaaaaa
    14701 taagtcatac gctacctaag atgaaattat attttttgcc tttttcaagg caaaaaatat
    14761 tattttttag acaaagctaa atttttgata tattgatcag ctagatataa gccgtttcca
    14821 ttgtcactga tgagtttgat tttatctact ataccacgga aaagtgcttc ttcttcgtgc
    14881 tgttcgctta cataccattg aagaaaatta aaagtagaat aatctttatt ggctagcatg
    14941 tgctctacaa gatcgttgat tgattttgta atgctttgtt catgctcgta agttttttca
    15001 aaaacatcaa gtaaagattt gaaattttgt tcaggttgct tcacttcttt aagctctaca
    15061 tgtgaatctg tttcattaag ataagttata agttttcttg cgtgttcgct ttcttcgctt
    15121 gcgtgttgaa aaagaaagag cccagctcca tcaagactat tttcatagca ccaagaactc
    15181 atacttagat ataaattagc tgcatacatt tctttgttga tttgctcgtt taataaatca
    15241 actacttttt ttgaaagcat tctatctcct tatttttatt tttagaatgt ttttaaaatg
    15301 atatattgat ttttttaaaa caagctaaat ttttaaagga ttgaagttaa aatatataaa
    15361 ataaaaataa aatgtttcta aatgaaatta agctttatat tttattacga gtatagattt
    15421 tattttaagg ctgaaaatct gcaaagattt ttaggtgggc gtgcctttag aggtttcaaa
    15481 aggactaagt cctttgtcgc aagacggaat ttatttccgt cgcgaagtaa aaaatgtttc
    15541 caaaatgttt ccaacttttt ctaaacttcc gttacttttt taaaagtaag gagaaaaaat
    15601 gaaaaaaatt ctagctttaa gtgttgcaag ttttgcttta gcgggtgctt taaacgcggc
    15661 tgatttaaaa atcgcaggtt catcaaccgt gtatccattt acttcttttg tagctgaaga
    15721 gtatgcagcg attcacaata caaaaactcc tattgtagag agtttaggaa cagggggtgg
    15781 atttaaagta ttttgcgagg gcataactga catttctaat gcttcaagag cgatgaaatt
    15841 tagcgaattt gaaacttgca aaaaagcggg agttactgat atagtaggga ttatggtagg
    15901 ttatgatggt atagttttag cgcaaaataa agccaacgca cctttaaata tcactaaaaa
    15961 agaacttttc ttagcattag caaaagaaat tccacaaaat ggaaaactta taccaaatcc
    16021 ttatacaaac tggaatcaaa tcaataaaaa tttacctaat cgtaaaatca gcgtttatgg
    16081 tcctccatca agctcaggca caagagatac tgtagaagaa cttgtaatga gtgatatttc
    16141 taaaaaaatt cctgaataca aaggcgagta taaaaccata cgccaagatg gagcttatat
    16201 tccaagtggt gaaaatgata atctaatcgt ttcaaaactt actatcgata aagatgcttt
    16261 tgggcttttt ggttatggat ttttagtaag caatgtggat aaaatcaatg cagcagatat
    16321 tgatggtgta aaagcagatg aaaaaaatat tgctgatgga aaatacgatc ttgcaagaag
    16381 tttatttatc tatatcaatg caaagaaaaa tcctaaagaa gcctttgaat ttgcaaaaat
    16441 ttatatgagt gatgatttgg caaaaagtgg tggagagctt gaaaaaatag gacttgttcc
    16501 tttaagtgat gataaattaa aagcttctca aaaacatgta gaagatagaa aaattttaaa
    16561 tgatgagctt gtaaaagctg gaaaagtttt ttaaggaaaa actttgctaa aagaaaaaat
    16621 aatcaaattc gcactttttt tatgtgcttt tgtaagcgtg atagtaagtt ttgctatcat
    16681 gcttacaatt ttaattgaag ctttaaaatt ctttcaaaaa gaaagcgttg ttaccttttt
    16741 attctcaagt cagtgggcag ctgatgcagc ttttatgaat gcagatggca cgagcaaaca
    16801 aggtgttttt ggggcactat cgcttttttg gggaactttt tatatttcat tgattgctat
    16861 gctaacggct ttacctttag gggttatgtg tgctatatat ttaggtgttt ttgctggcaa
    16921 aaaatctaaa aattacttaa aacctatttt agaaatcatt gcagggattc ctactgttgt
    16981 ttt
//
LOCUS       DARAII010000025        16833 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.025, whole genome shotgun sequence.
ACCESSION   DARAII010000025 DARAII010000000
VERSION     DARAII010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16833
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.025"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..76
                     /locus_tag="SB143_000708"
     CDS             <1..76
                     /locus_tag="SB143_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEF9749264.1"
                     /translation="KEDLSLLKSQSALLEKIQTLKAEK"
     gene            73..966
                     /locus_tag="SB143_000709"
     CDS             73..966
                     /locus_tag="SB143_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEF9749265.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIKEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLKNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFIYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKLKTYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            959..1375
                     /locus_tag="SB143_000710"
     CDS             959..1375
                     /locus_tag="SB143_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEF9749266.1"
                     /translation="MLNTILNLPLHHIGVACKNVEKEKECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            1372..2934
                     /locus_tag="SB143_000711"
     CDS             1372..2934
                     /locus_tag="SB143_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEF9749267.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            2924..3985
                     /locus_tag="SB143_000712"
     CDS             2924..3985
                     /locus_tag="SB143_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEF9749268.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLKTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLVCGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLESLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            3985..4206
                     /locus_tag="SB143_000713"
     CDS             3985..4206
                     /locus_tag="SB143_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEF9749269.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFALKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(4220..5434)
                     /locus_tag="SB143_000714"
     CDS             complement(4220..5434)
                     /locus_tag="SB143_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEF9749270.1"
                     /translation="MLINQSFEIDSCDDVELGIKRTSKLEYRISYDDEKDVKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVAVVHVFYHCFCHRRSNVEKYSAYKFFQDEDIEN
                     IKNLLNRFHFSYGEINNDNALFLANSLVKHVENLKMQNKLDYNFKLNFTSTIIPPNGD
                     YQNYGIMAALDHINALKDLVKRFPKFADLPKIYGGGSYGGYLSLLIAKIAPWYVDGVI
                     DNSGSALPSPMFILERESGQYDYFEEYPHNKIGFFIKTYWNADVSSKYFFHTENYLIR
                     IIPNLAHLTIQANINKNIILVSYHSLKDPFNTAKDKQTLFLAYKELGYDATLHLIKDE
                     SEIDGRFIKDLNHGMRISDKALFRKELPLMLEKLQKRKSLMQENSISYPCGNKVFIFK
                     DVGDKFELTIKD"
     gene            5495..7003
                     /locus_tag="SB143_000715"
     CDS             5495..7003
                     /locus_tag="SB143_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid adenylation domain-containing
                     protein"
                     /protein_id="HEF9749271.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LAGEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLLKNAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSAIFWVPSVLIYFANTNAVNASTLKNLKKVLFC
                     GEIMPNKQLNIWRKHLSDTLFANLYGPTEITDVCSFYIVDREFKDEELLPIGKACKNT
                     ELLVFDENMNFINPKQIGIKGELYVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKDFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            7042..7269
                     /locus_tag="SB143_000716"
     CDS             7042..7269
                     /locus_tag="SB143_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEF9749272.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(7266..8336)
                     /locus_tag="SB143_000717"
     CDS             complement(7266..8336)
                     /locus_tag="SB143_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEF9749273.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEERLLKKGYIYPKSLRVANR
                     HWALVDMVLELVQREDILQKESILSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKVYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            8437..9455
                     /locus_tag="SB143_000718"
                     /pseudo
     CDS             8437..9455
                     /locus_tag="SB143_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777690.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase"
     gene            complement(9768..10979)
                     /locus_tag="SB143_000719"
     CDS             complement(9768..10979)
                     /locus_tag="SB143_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEF9749274.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVIHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     INGILKNINLGHLSVNKDNFESIIPLIKQKVNKMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGVMAAIDHINVLKDLVKKFLNFKNLPKIYGGGSYGGYLSLLIAKIAPWHVDGVI
                     DNSGVCLPFLAHILGRDMNQGEFVFEGDNNRIYCFVQKYWTRNINSSYYFGDENYLIR
                     AVLNSNHLKIQASMNNNTIFISYHSMQDMGAPVQNKIELYKCYQELGYDATLYLVKDE
                     NDIDGRFIKSLEHGLRMTDKALFRKELPLMLEKLQGRKFDMSKNSITYPCKDKQFIFK
                     DKDDKFELEIV"
     gene            11059..11757
                     /gene="pseF"
                     /locus_tag="SB143_000720"
     CDS             11059..11757
                     /gene="pseF"
                     /locus_tag="SB143_000720"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEF9749275.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAAVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            11741..12565
                     /gene="pseG"
                     /locus_tag="SB143_000721"
     CDS             11741..12565
                     /gene="pseG"
                     /locus_tag="SB143_000721"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEF9749276.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYDDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESTKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            12562..13035
                     /gene="pseH"
                     /locus_tag="SB143_000722"
     CDS             12562..13035
                     /gene="pseH"
                     /locus_tag="SB143_000722"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEF9749277.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALQLYQQNHFTIYDEDKDFYYVCLKQSHCKALPS"
     gene            complement(13000..13746)
                     /gene="hisF"
                     /locus_tag="SB143_000723"
     CDS             complement(13000..13746)
                     /gene="hisF"
                     /locus_tag="SB143_000723"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEF9749278.1"
                     /translation="MLKTRIIPCVLLKNSQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(13747..14352)
                     /gene="hisH"
                     /locus_tag="SB143_000724"
     CDS             complement(13747..14352)
                     /gene="hisH"
                     /locus_tag="SB143_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEF9749279.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQDPLYQGIEDKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFIRL"
     gene            complement(14349..15485)
                     /gene="pseA"
                     /locus_tag="SB143_000725"
     CDS             complement(14349..15485)
                     /gene="pseA"
                     /locus_tag="SB143_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HEF9749280.1"
                     /translation="MRFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGIAEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            15741..16772
                     /gene="pseI"
                     /locus_tag="SB143_000726"
     CDS             15741..16772
                     /gene="pseI"
                     /locus_tag="SB143_000726"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEF9749281.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKEAGADAI
                     KIQTYTPDSMTLNSNKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     RICEIFKEEKNPNLIFLKCTSAYPAAIEDMNLKAIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKASKDIEFG
                     DALKQGDFQ"
BASE COUNT         6139 a         2627 c         2343 g         5724 t
ORIGIN      
        1 caaagaagat ttaagtctct taaaatctca aagcgcttta ctagaaaaaa ttcaaaccct
       61 aaaggcagaa aaatgaaaga aaatattgaa aaattatttc aagccatcgc tcaaaaaaat
      121 cctatccatt ctaaatatct taaaaaaatt gaattttcac aagaagacga agaagaattt
      181 gataaattaa tttcttatta tattcaagat ggtatcagta taaaagaaca atgcgattgt
      241 tatttattga tccttaacga tactttagaa gaaacaaaat ttttcataga aaatggggct
      301 tatcgttatt ctagctttga tgaagttaag gataaagttt attttaatga aagctatatg
      361 aaacaataca tgataggctt agctctttct tcttttgttt ggatagctca tattaaagtg
      421 agaaagtatt tttcacaata tttaaaaaat tttactccaa aaacaactta ttttgaaata
      481 ggccctggcc atggagaata ttttgcaaga gcagttaaaa gtggtaaatt ttccgccttt
      541 tatggacttg atatctctcc aacaagttgc gaacttactc aaaaaatggt aaaacaacaa
      601 gtagggggat tgattacaaa atgtgatttt ttatgtcaag atttttttat ttatgatttt
      661 gataaaaaag ctgatttgat agtgattgga gaagtgctag aacacgtaga aaaacctctt
      721 gaattcctta aaagatctaa agaacttctt agcgatggag gggaaatttt tgcaactatt
      781 cctatcaatg ctcctgctat tgatcatatt tatttatttt cccatcctga tgaagttaaa
      841 gatttgatag aaaaatcagg cttaaagctt aagacttatg aatgttttat ggcaaatgat
      901 tatagtttag aaaaagcatt gaaatttaaa aatgctatca ctatggcagt agttttaaat
      961 gcttaataca atactcaatt taccccttca tcatataggc gtggcttgta aaaatgtaga
     1021 aaaagaaaag gaatgttttt ttaaactagg tttttataaa gaatcagaat ttatagatga
     1081 aaaacaaggg gtaagaggcg aatttatcat tccttgtaat gaagcatttc cacagtatag
     1141 atttgaactt ttgcaaaatt taaacgataa aggcccacta gatagctatt taaaaaataa
     1201 taccaaaatg tatcatttag cctatgaaag taaaaatatc gcccaagatt taattctttt
     1261 ggaacaacaa ggaggcattt gtattgttcc tattatgcaa gcaagctatt ttgctaaact
     1321 ttgttttatc atgatgccaa ataggctttt aatcgaactt gtggagctaa aatgaatctt
     1381 ttttcacctc atttaaaacg caatgagctt ataaaattcg ccaaagaatt agactttagc
     1441 aaaagtcaag atcttcttat taatgtccat agaaatcatg cttttgaagg agtgcaaagt
     1501 atcattgctc cttttttaca ttttgctaat ttaagagctg agtttaattt cagctcttat
     1561 gatgatagct tgagttttga taactttaaa gaagctagtt tagaactttt atggctagat
     1621 ttaacccgct ataaaaataa tgtgcaaaat tttatagaag aaagactttt agaactaaga
     1681 aaaatttcac aaaaccctat tttagttctt agtttaggag aatttaaaac agataaaaaa
     1741 attttaaatt gtgaaatttt taacatagaa aaactcataa aagagtattt tgatgaagaa
     1801 gatattttag acttagctaa agaagaactt acaggctcta agcttaataa taaagccttg
     1861 atttttttag cacaaatttt aggacttagt ctcatccctg cacttgtaaa acccgctctt
     1921 aaagctcttg tacttgatct tgataatacc ttgtatcaag gaattttagg tgaagagggt
     1981 atagataatc ttaatttaag tcctttgcac aaaaccttac aagaaaaaat taaaactttt
     2041 aaaaaacaag ggtttttact tgccctagct tcaaaaaatg aagaaaaaga cgcaaaaaaa
     2101 ctttttgaaa taaggaaaga tttcatctta caatgggatg attttgatgc tagaatgatt
     2161 aattgggagc caaagggtga aaatatctta aaaattgcta aaaaatttaa tataaatact
     2221 aacgctatgc tttttataga tgataatatc gccgagcttg aaaataccaa atttacaggc
     2281 gttaaaacac ttttatgcga tgaaaatata ctttataaaa tcaaactttt tcctaatctt
     2341 ttaaaacttt caaataccaa agaagatcaa attcgtgcca aagatatagc agccaatgct
     2401 ttaagagaag agcttaaaag cttaagcgat gaagaatatt ttcaaaatct tgaaatcagc
     2461 ttaaatttta gcaaaaatga tctgcaaaat atccctcgca ttagcgaact tttaggcaaa
     2521 accaatcaat ttatcgctaa ttacacacgc ttaaatcaag aaaaagtcgc acaacacatg
     2581 caaaaagaac tcattgtaag tgtgagtatg agtgataaat taagcgatag tgggattatc
     2641 gctatttttg ttttttcttg taaagaagga aatttattta tcgatgatct ttgcatttct
     2701 tgtagggctt taggtagaaa acttgaaact agaatgtttt ttaaagcctt tgaactagct
     2761 ttacatttct ttgatcttaa aaacaataat gcaaggcttt actatcaaaa aggcgaaaga
     2821 aatatgccat ttttgagctt tttagaacaa atttccaaag aatttgaaaa aaactcagcc
     2881 cttattccat ttcaaaattt aaacttcaaa ggacttataa tccatgaaaa ctagatttga
     2941 taaagctaaa atttcaggca tttgcgtaag cgtacctgaa cataaaattt gcattgatga
     3001 tgagttagaa agcgtttttt caaatgatat taaaaccctt aaaagaatga aaaaagtcat
     3061 aggcttaaaa acacgttata tttgtgatga aaacacttgt gtaagcgatc ttggcaaaca
     3121 cgcagccaat acacttttac aaggtttaaa tatagataaa aatagtcttg atgcactcat
     3181 cgtagtaact caaagtcctg attttttcat gccttctacg gcttgttatt tacatcagct
     3241 tttaaattta agctctaaaa ccatagcttt tgatttaggg caagcttgtg cagggtattt
     3301 atacggctta tttgtcgctc attctttaat acaaagtggc ttaggtaaaa ttttgctcgt
     3361 ttgtggggat actttaagca aattcatcca tcctaaaaat atgaatttag cccctatttt
     3421 tggtgatgga gtaagtgcaa ctttgattga aaaaacggat tttaacgaag ctttttttga
     3481 gcttggaagc gatggaaaat attttgataa actcatcatt ccaaaaggtg cgatgagaat
     3541 acctaaagca gatattttca acgatgattc actcatgcaa actgaggagt ttagacaatt
     3601 agaaagtctt tatatggacg gagcaaatat tttcaatatg gctttggaat gcgaacctaa
     3661 aagctttaaa gaaattttag aattttccaa ggtagatgaa aaagacattg cttttcatct
     3721 ttttcatcaa tccaatgcgt atttggttga ttgcattaaa gaagaattaa aacttaatga
     3781 tgataaagtt cctaatttca tcatggaaaa atacgctaat ttaagtgctt gttcactacc
     3841 cgccctactt tgcgaactag atactccaaa agaatttaaa gcgagtttaa gtgcttttgg
     3901 tgcagggctt agctggggaa gtgcggtgtt gaatttcaaa gatttataca caaaagatat
     3961 tttaatttac acaaaggaga aataatgaca aaaactgaat ttttagaaga gcttaaagaa
     4021 gctatgcata gagatgaaga cttaaacgag gatatgctac ttgatgatat agatgagtgg
     4081 gatagtttgg cttttgtatc tgtgatggtg ctttacaaaa atctttttgc tttaaaaatc
     4141 acagctgagg acttgaaaaa ttgtcaaaaa gtaagtgatt taatcaattt agcaaagctt
     4201 gattaaaacc tttaaggttt taatctttta tcgttaattc aaatttatct cccacatctt
     4261 taaatataaa cactttattt ccacaaggat aagagatgga attttcttgc attaaagatt
     4321 ttcttttttg caatttttca agcattaaag gaagttcttt tctaaataag gctttatcac
     4381 ttattctcat accatgattt aaatctttta taaatcttcc atcaatctca ctttcatctt
     4441 ttatcaaatg taaagtagca tcatatccta gttctttata cgctaaaaaa agagtttgtt
     4501 tatcttttgc tgtattaaat ggatctttta aactatgata agatactaaa ataatatttt
     4561 tgttaatatt agcttgtata gttaaatgag ctaaattagg aattattcta attaaataat
     4621 tctcggtatg aaaaaaatat tttgaactaa catccgcatt ccaataagtt ttaataaaaa
     4681 atcctatttt attatgtgga tattcctcaa aataatcata ttgtccactt tctctttcta
     4741 aaataaacat gggagaaggc aaagccgaac ccgaattatc aatcacacca tccacatacc
     4801 aaggagctat ttttgctatg agtaaagata ggtatcctcc ataagacccc cccccataaa
     4861 tttttggtaa atctgcaaat tttggaaaac gtttaactag atcttttaaa gcattgatat
     4921 gatcaagtgc tgccataata ccatagtttt gatagtctcc attaggtggg ataatagttg
     4981 aagtaaaatt taatttaaag ttataatcga gtttattttg catttttaaa ttttctacat
     5041 gctttaccaa agaatttgct aaaaaaagtg cattatcatt atttatttca ccataagaaa
     5101 aatgaaaccg atttaataaa tttttaatat tttcaatgtc ttcatcttga aaaaatttat
     5161 atgcactgta tttctcaaca tttgatcttc tatgacaaaa acaatgataa aaaacatgca
     5221 ccactgcaac atcaaaattt ttagcgatat attctctatc aaaatctaaa aaagaaatat
     5281 ttgcattggc tccaaagcca cccactataa aaactatagc tttgacatct ttttcatcat
     5341 cataacttat gcggtattca agcttactag ttcttttaat acctagttct acatcatcac
     5401 aagaatcaat ttcaaagctt tggtttatga gcatataaag gcctttttta ttaatttatc
     5461 gatattatat tacaaaaaat taaaaaggta aatcatgaca actcatatct atgatttttt
     5521 agaaaaaagt ttaatcaaat ttagcgaaaa aactgctttt gtagaaccct ttgccaaaga
     5581 aagaaaggaa atcacttaca aagactttga tctcttttct aaaaaactag ccggtgaaat
     5641 tttaaaaact ttaggaaatg ataatcctac tcaagctcct gttttaatca tcttgcctaa
     5701 agggattgat tgtttgattt cattttttgg agtggcactc agtggaaatt tttatacact
     5761 tttagatgaa aaaagtccta aagaaagagt agaaaaagtc atagaagttt taaagcctaa
     5821 actttttatc acttcaaagg acttaaattt taacttagat ttacctacgc tttatacaca
     5881 agactttgaa agttttaata tagatgagag tttgctaaaa aatgctaaag aaaaacacat
     5941 agatactaat ttactctatg ttttctttac aagtgggagc acaggtattc ctaaaggagt
     6001 aagcatagca cataagagtg tgattgatta tactttttgg gtgtgtgaga cttttaaatt
     6061 tgatgagaat gaaattttag ccaatcaagc accattttat tttgacaata gcattttaga
     6121 tattttttca agtgtaaaat caggagcgac tttacacctt ttacctaatc atctttttgc
     6181 ttttccaaat aaaattttag aatgcttaga aaaagaaaag gttagtgcta tattttgggt
     6241 accttcagtg ctgatttatt ttgcaaatac taacgcggta aatgcttcca ctctaaagaa
     6301 tttaaaaaaa gtattatttt gcggagaaat catgcctaat aaacaattaa acatttggcg
     6361 caaacattta tccgatacac tttttgccaa tctttatggc cctacagaaa tcactgatgt
     6421 gtgttctttt tatatagtag atcgtgaatt taaagatgaa gaacttttgc ctataggtaa
     6481 agcttgtaaa aatacagagc ttttagtctt tgatgaaaat atgaatttca taaatcctaa
     6541 acaaataggt ataaaaggtg aactttatgt gagaggaact tctttatctt taggatacta
     6601 taatgataaa gaaaaaacca aacaagcttt tattcaaaat cctttacatg ataattattt
     6661 agatttactc tataaaacag gagatatcgt ttcttataat gaatttggag agcttttatg
     6721 ctacggaaga gcagataatc agataaaata tatgggacat agaatagaac ttggagaaat
     6781 agaaagcgtg ataaattctc atgtgaatat taaaaacagt gcttgtattt ttaaagaaga
     6841 tattatttgt ttttatgaaa gtgaagaaga aattaatttt aaagattttt tgaaagataa
     6901 attaccttct tatatgatcc caaaaaattt tattaaactc gacaaattta agcttaatca
     6961 aaatggtaaa attgatagaa aggttttaaa agaacttgtt taaataaata ttttataatt
     7021 tcaaaaaact aaagggaaaa aatgcaagaa atcaaacaat tttttatcaa tatagaaaga
     7081 acagatatca atgagagtat ggaaaatcta gtaagtgaag attttatcga tagtatcgat
     7141 atcatggctt tggttgccga aatagaaaaa ttttataaaa aacccttaaa agcagaattt
     7201 atcacacctg aaaattttga aagctttgaa aatatcaaaa aaatgcttga aactgcaatg
     7261 aaagactaat ctttccttgc aagttcaagc tgttctttta aagaactgat gatttcattt
     7321 ttagaaacaa taatttgtgc tataaaatcc gccacatcat cccaatcttt acttagcata
     7381 tgggttaaag tataattttg ttcatattct tcccaattca caggagtaaa aagagaattt
     7441 ttatgcggga aatatttgtt ttttacccat tcaagtgaag aagcaaaata atccacataa
     7501 actttagcaa tatctttttg cactgcaaat tttaatcttt tttctttgct gccttcaaat
     7561 tttcttcttg ccataaaaag caaagaatta agattatcct gctttaaatc tttttgattt
     7621 aatcttgaca taagctccat tcctaaaaga ttaaaacttt catttttggt ttgttttaaa
     7681 acaaaactct catcccattc aagtcctaaa tgataaacaa aatccttaag taaagtccct
     7741 cctacataat cctcccttag aagtcttact atcaaatttt cttctccaaa tacctcagca
     7801 tgagttttgc aaatccattc atagtcaaaa atatattttc taggatgatc ttgcggagca
     7861 aaatcagcag aataataccc catattgttt ttatgatctt gagaacaatg tgagtttaaa
     7921 taacccaaag tatctctaaa atacacaata atataaattt gagtaaaacc taactctctc
     7981 ataatctttt ctaaaatttc tacatgtttt ttggtagaaa aatcccaaac tataccctca
     8041 gctgaaaaaa taaatttttt atctttatgt aaagcacttt cacttttaaa attttctata
     8101 gctctaagaa gtctttcatt tgtgatatga cttaaaatac tctctttttg caaaatatct
     8161 tctctttgaa ctagttctaa aaccatatct accaaagccc aatgcctatt tgccactcta
     8221 aggctttttg gataaatata gccttttttt aaaagccttt cttcgttttg catcaagaag
     8281 ccttgttttt cttgatttcc tgtattagta gttcctatat gtaaatatgc tgtcatttta
     8341 tatcctttct ttacaaaaaa ttatactccg tttgtgctta aattttaagc attcataagt
     8401 tacaatttat ctattaaata ctagaaagaa gtaaaaatga atttaaaatt aaactcacac
     8461 aatattaagg ctattagtat agttttaccc aaaaatccac ataccttaga aaaagaatta
     8521 caagaatgca atttaaacca gaaaaaatac gaacttttaa agcaaaatac cggtataaat
     8581 catcatttca taagccctaa taatatctat gcaagtgatt tagcacaagc aaagcactag
     8641 aaaagctttt tagagaaaat ttgcttttaa aagatgagct tgatgtactt ttagtttata
     8701 gtttttcacc agattttcta gcccctgcac tttcaagttt aatccataaa aatcttggtt
     8761 taagtgaaaa aactctgtgt tttgataata ttgctttttg cccaggattt ttacaaggcc
     8821 taatgcaagc tttttcttta ctagataatg aaaatatcaa aaaaatagct ttcatttgcg
     8881 taagtgtaaa aagtaaaaaa atacccaaaa aagataaaat cacctacctt agtaatagcg
     8941 acagtgctag cgttattttg cttgaaaaat ctaatacaaa agaaaaagct tttttctcgc
     9001 aaaaaatctt ttccaaatta gccacagaag aaacttttcc tctaaaatgc tttaaagaag
     9061 caaatgattt tatcgatatg gacaaaaatc tcacattttc tcacttaaat gaaaattttc
     9121 ctcgattttt tgatgatttt tttgataatt ttaaacttga taaaagcaaa ataggcgaat
     9181 ttttctttgg aagtgcaaat aattttataa aaactaaatt attagaactc ttaaatttca
     9241 aagaaattaa aaatgatgaa actttaaaaa attatggcga tgttacgata aataaattag
     9301 cctttgattt ggcaaactat gaatggagga aggggggcat aaaacaagtt tttatggcta
     9361 gttttggcac aggaattacc tttaatgcca tgagtttgaa aattgatttt agcaaaatta
     9421 aaaactttat cgaaattatt gattttaata cttgaaaaaa tatactatgt ttcaagcgta
     9481 gattttattt aagcataggc taaaacaatg cggtggaaaa attagagtta tttatcaact
     9541 caagcaactc atttgccatc ttcaacagaa aattatttta aagtcttttt ctattattgg
     9601 tagcaccttt ttcaccaaga gaaattaacc acttaaacaa atcattatac aaaaatattt
     9661 cacttttttt aaaaaaatca taaatttaat ttttatatta ggcaaggaaa tatccatcta
     9721 caaagcccct ccctagcaat cctttcttaa ctttactaac gataatctta aacaatttca
     9781 agctcaaatt tatcatcttt atctttaaaa ataaattgct tgtctttgca aggataagtg
     9841 atagaatttt tactcatatc aaattttctt ccttgtagtt tttcaagcat caaaggaagt
     9901 tcttttctaa ataaagcttt atcagtcatt ctaagaccgt gctctagact ttttataaat
     9961 ctaccatcta tatcattttc atcttttacc aaatacaaag tcgcatcata tcctaattcc
    10021 tgataacact tataaagttc tattttattt tgcactggag cgcccatatc ttgcatgctg
    10081 tgatagctta taaagatagt attattgttc atacttgctt gaattttgag atgatttgag
    10141 tttaaaacag ctctaattaa ataattttca tcaccaaaat aataagaaga atttatattt
    10201 ctagtccaat atttttgcac aaaacaataa attctattat tatctccttc aaaaacaaat
    10261 tctccttgat tcatatctct tcccaaaata tgtgctaaaa atggcaagca aactcccgaa
    10321 ttatcaatca caccatctac atgccaagga gctatcttgg ctatcagtaa agataaatat
    10381 cctccataag atcctccccc ataaatcttt ggaaggtttt taaaatttag aaattttttt
    10441 acaagatctt ttaaaacatt gatatgatca atagctgcca taacgccata gttttgataa
    10501 tctccattag gtgggataaa atcacaagaa agttctattt tttggctttc atcaaccaaa
    10561 cctgcttgtt tcattttatt aactttttgc tttataagag gaataattga ttcaaaatta
    10621 tctttattaa ccgataaatg tcctaaatta atatttttta aaataccatt gatacgctct
    10681 aaatcatctt gattgggaat aagctttgga ttatactttt gatcaatact ttgtcttgca
    10741 caaaaacaat gataaaaaac atgtatcact acaacatcaa aatttttagc aatatattcc
    10801 ctatcaaaat ctaaaaaaga aatatttgca ttagctccaa aaccacccac tataaaaact
    10861 atggctttaa tatctttttc atcatcataa cttatgcgat attcaagctt actggttctt
    10921 ttaataccta gttctacatc atcacaagaa tcgatttcaa aggtttggtt tataagcaat
    10981 tttaagcctt ttattgtatt ttaaagacaa ttatacttaa attttagtaa aataaaacac
    11041 aaaaaacaag gcttaactat gaaaaatctt tgtatcatcc ctgctcgtgg tggatcaaaa
    11101 agaattccta gaaaaaatat cattgatttt ctaggtaaac ctttaatcgc ttatagcata
    11161 gaaaatgctt taaattcagg tatttttgat gaagtggtgc tttcaagcga tgatgaagaa
    11221 atcatagaag tagccttaaa atacggtgca aaagctccat ttgtgcgtga taaaaattta
    11281 agcgatgatt atgcttcaag cactgctgca gtgcaaaatg ccatagaaat tttacaaagc
    11341 caaaatcaaa tttatgatca tgtctgttgt ctttatgcta ctgctccttt gttaaataaa
    11401 gacattttaa aacaagccta tgaaaaattt atacaaaatc aaagcaagtt tttatttgct
    11461 gctactgagt ttgagtatcc tatacaaagg gcattttatc taaatgaaaa caatcaagtt
    11521 tatatgtttg atgaaaaaca ttataaaagt cgttcacaag atctaacaaa agcttatcat
    11581 gatgcaggag ctttttattt tggtacaagc aaagcttggc ttgaggaaga ttttatattt
    11641 aaacctcatt ctagcgtgtt tgtattgcca agaaatttag tttgcgatat agacaccata
    11701 caagatttgg aatttgcaaa aatactttat aaggtaaatc atgaaagtgc tttttagaag
    11761 cgatagctcc agtcaaatag gctttggaca cattaaacgc gatctagtct tagctaaaca
    11821 atatgatgat gtaagttttg cttgcttgcc tttagaaggc tctttgatcg atgaaattcc
    11881 ttatcctgtt tatgagctta gtagcgaaag tatctacgag cttatcaatc tcatcaaaga
    11941 agaaaaattt gaacttctta tcattgatca ctatggcatc agcgtagatg atgaaaaact
    12001 gatcaagctt gaaacagggg tgaaaattct aagctttgat gatgaaataa agcctcatca
    12061 ttgtgatatt ttactcaatg tcaatgccta tgcaaaagca agtgattatg aaggtttagt
    12121 gccttttaaa tgcgaagtaa gatgtggttt ttcttatgct ttaatcaggg aagaatttta
    12181 tcaagaggcc aaagaaaata gagaaaaaaa atatgatttt ttcatttgca tgggtggaac
    12241 tgatataaaa aacctttctt tacaaattgc tagcgaatta cctaaaacaa aaatcatcag
    12301 cattgcaacc agctcttcta atcctaatct taaaaaattg caaaaatttg caaaattaca
    12361 taacaatatt agattattta tcgatcatga aaatattgca aaattgatga atgaaagcac
    12421 aaagcttatc atcagtgcta gttctttagt caatgaagct ttgcttttaa aggcaaattt
    12481 caaagctatt tgttatgtta aaaatcaaga atctacagca acttggcttg ctaaaaaagg
    12541 gtatgaagtg gagtataagt attgataaaa cttaaaaatt tcacagaact taattctcaa
    12601 gaaatagagc tgatttttaa atggcgcaat caccccgata tcaatcaatt tatgaaaaca
    12661 aaatatattg attttgaaga acatttaaga tttttaaaaa aattacatca agattctagc
    12721 aaaaaatatt ttttagtttt tcaagatgaa cagattatcg gcgtaattga ttttgtcaat
    12781 atcacaacta aatcttgcga atttggactt tacgcaaaac ctaatttaaa aggcgtagga
    12841 caaattttaa tgaatgaaat tataaaatac gcttttgaaa acttaaaagt aaatactctt
    12901 aaagcttatg ttttcaaaga caatcgcaaa gctttacaat tatatcaaca aaatcatttt
    12961 actatttatg atgaagataa agatttttac tatgtttgcc taaagcaatc tcactgcaaa
    13021 gccttgccta gctaattctt cttttacatc tttaggggta tacttagaaa aatgaaaaat
    13081 ataagcaccc gctaaagcat cagcacctaa atttaaagcc tcaactccat cacttggatt
    13141 gctaagtcct ccattgataa taagaggaat tttaagttta ttttgaaaga tctttaaaag
    13201 ttctaaatca taaccctttg cccttccttc aaaatccaca gaagttaaaa gaagctctcc
    13261 agctcctttt ttttcatatt ctaaagcaag ttctaaagga cttttttcga gtaaatttcc
    13321 cctgtcataa acacaaaatt gccctccttt tcttttaaca tctatagaac aaactataca
    13381 ttgagaacca aaacgattag ccgctttact tataaaatcc atatcttcta aggccttaga
    13441 attgatagaa attttatccg cacctaaatt taaaatcttt tgtatatctt caagggtttt
    13501 tatcccgcca cctatagtta aaggcataaa acattcttta gcaagatctt ctatactttc
    13561 aaaatctatt tctccacttt ttgaagcatc tatatctaag ataataagct catcaacatt
    13621 gcgtgcatta taaattctca tcgttgaagt taaatgccct atagtgcgaa aatctttaaa
    13681 ttctatactt ttaacaagtt gagaattttt aagcaaaaca caaggaatta ttctagtttt
    13741 taacatttaa agccttataa aattttctaa aagttttaag cctaaatttt gacttttttc
    13801 aggatgaaac tgcgtcgcaa aaatatgatc tttttgcaaa gatgcgacaa atttatgccc
    13861 atattgtgct ttagcactta caaactcatc tttgcatttc acataaaaag aatgcacaaa
    13921 ataaaaatca ctcttatctt ctatgccttg atacaaagga tcttgtttta aaatttcaag
    13981 ctcattccaa cccatgtgtg ggatttttaa atttaaatcc tcttcaaatt tgactacttc
    14041 accttctata aaaccaagtc cttcgcaaac tccaccttca tagccccttt ctaaaaaaag
    14101 ctgcattcct aaacaaatgc ctaaaatagg ttttttttgt actaaaactt gctcttttaa
    14161 agcttctata aaaccaagtt cttttaaatt tttcatggct tctttaaaag atcccactcc
    14221 aggtaaaagc aatttatctg ctttttgcaa atcttttgga tttttagcta tgaaatttat
    14281 agctcctatt ttttcaaaag ccttagcaac agagtttaaa tttcccgcct tgtaatcaat
    14341 gagcgctatc attttaaaac acactcgtct tttcttacca aagaaccatc ataatctctt
    14401 ataaatttac cattttcatc acgtttaaaa atttttttat tggtaaaaga atctactatt
    14461 ttttgaaatt cttcctcgct aaaaccactg aattcaaggt attttttaat agccttttta
    14521 gggggcttgc catcgtattt ttgtaccaaa cgcacccctt cttcacggct gatataacct
    14581 aaacgaatat ccaaacaagc attatccgtt gctctaccaa agccgtattt gcagtatttt
    14641 aaataatcat gcacatgatt agaataacaa tctaaatttt caaaattttc ataagtagtc
    14701 tcaacaggat gatctagagt taaaaaacca tattttttag aaatttcaag aattttttta
    14761 taatcccatt taaaataata ccctaaaaat agccccgtaa cccctactct ttgaagttct
    14821 tcatcacttg gataagtata taaaaacaaa tctttttcag cgataccatt taccccaagc
    14881 atatcagaag cacgatttcc taaaagcccg ccaaattctt caagccactc tctgcctaaa
    14941 atatttttat ttttactact cgcaggaccg ccatactcta tctgtggact ttctccccag
    15001 atgatcaaag gcactccaaa atttaccgct atgcgtggaa cagaagtaaa aattcccaaa
    15061 tggttttgcc actcattatc ccctgttctt ataaaagctt cacgggcaag tttttgataa
    15121 acttttggat cacgcttgat atggatcaaa tccacgccaa gatgatttaa attgtctaaa
    15181 tttttgcgcc ctattttcgt aggcacacta ggctcaaaac acacacacaa aggattaagt
    15241 ccaagttcaa gcattttaac cacttgaaaa gtagaatctt ttccgccact tactccgata
    15301 acacaatcat aaacaggatg ttttttgtat ttttttataa gctcaaaaaa ttctttttct
    15361 ctttcttgcc aattaatatt ttgattttta gcttcttgag aacgacaagc atcacaaaca
    15421 ccttcttcat caaaatgtaa atcaggctta gtatctggca tcacacattt tttacaaaat
    15481 ctcataaatt tcctttaatt agtcttaaat atatatcgtt ataattaaat tttattttat
    15541 aattttatat atttatatta tataaaaatt aaaaaatgaa taaattctat gatttaaatc
    15601 cctatggcat tttttgaatg aaaccaagca aaatcataac aaagtcgtaa tatttatata
    15661 atataaatat ataaattgaa gaaatatata atataattat atatcatttt agtcaggaaa
    15721 tttaccaaag aaagaaaaac atgcaaatag gaaattttaa caccgataaa aaagttttta
    15781 tcatagcaga acttagtgca aatcacgcag gaagtcttga gatggcactt caaagtataa
    15841 aagctgccaa agaagcaggt gctgatgcga taaaaattca aacttacact ccagatagca
    15901 tgactctaaa tagcaacaaa gaagatttta ttattaaggg tgggctttgg gataaaagaa
    15961 aactttatga gctttacgaa agcgcaaaaa ccccctatga atggcattct caaatctttg
    16021 aaaccgcaca aaatgaagga atactttgtt tttcaagtcc ttttgccaaa gaagatttag
    16081 aatttctaaa acgctttgat cctatagcct ataaaatcgc ttcttttgaa gctaatgatg
    16141 aaaatttcgt gcgtttaatc gccaaagaaa aaaaacctac catcgtttca acgggcattg
    16201 ctacagaaga agaacttttt agaatttgcg aaattttcaa agaagaaaaa aatcctaact
    16261 tgattttttt aaaatgcacc tcagcctacc ctgctgccat agaagatatg aatttaaaag
    16321 ctatagtgag tttaaaagaa aaatttaatg ttgaagtggg actaagcgat cacagctttg
    16381 gttttttagc ccctgttatg gcagtagcac ttggagctag agtgatagaa aagcatttta
    16441 tgttagataa aagcatagaa agtgaagaca gtaaatttag tcttgatttt gatgaattta
    16501 aagctatggt agatgcagta agacaagctg aaagtgcttt aggcgatggt aagttagatc
    16561 tagatgaaaa ggcgcttaaa aaccgtgttt ttgcaagaag cttatatgca agtaaggata
    16621 tcaaaaaagg tgaaatgttc agcgaagaaa atgtaaaatc cgtgcgtcct tcttttggac
    16681 tacatcctaa attttatcaa gaacttttag gaaaaaaagc tagcaaagat atagaatttg
    16741 gcgatgcttt aaaacaagga gatttccaat gaccttcacc cctactcaaa aagaactctt
    16801 taacaaaaac attgagtctt taagtaatat tct
//
LOCUS       DARAII010000026        16708 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.026, whole genome shotgun sequence.
ACCESSION   DARAII010000026 DARAII010000000
VERSION     DARAII010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16708
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.026"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..196)
                     /locus_tag="SB143_000727"
     CDS             complement(<1..196)
                     /locus_tag="SB143_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEF9749282.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRIGNPTSDVLG"
     gene            complement(622..3165)
                     /gene="flgE"
                     /locus_tag="SB143_000728"
     CDS             complement(622..3165)
                     /gene="flgE"
                     /locus_tag="SB143_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEF9749283.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTRYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPKNIFID
                     PGMHIPAAKSTEVAVKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGSLFNAKGQGLNLRDGQGIWVSYADAKFTTDKANNANVFD
                     PNSTIAQQNNVIFWGNKDIAVTLDINLNGIRIQNNNIRSLDEAIAYINTFTAPTDTRD
                     GTGVKAVKKADGSGIEFVNDNADGTTDNMKNIDLTVNVGNSAGERNTINYNANTGVFS
                     PQGNLTTAQNDTDWIAGAAQLGQPQNVKVVTAHKYIYSSNPVDIGPMYNPDGGPAFQP
                     GANANTRPTEPGSAAYWDAVNGGLLNTNVRTFRTTEDLRELLQRDARYGVDYDGSGTF
                     AAADINQNIKVVVTADGHFAISNAKEDSTVPGNAINGQANAVTTTPKNMSFNITAYSN
                     KQGTVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQ
                     FVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLASYNPKTLN
                     FSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDK
                     GNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGTGGRGE
                     MKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            complement(3369..3845)
                     /gene="ruvC"
                     /locus_tag="SB143_000729"
     CDS             complement(3369..3845)
                     /gene="ruvC"
                     /locus_tag="SB143_000729"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEF9749284.1"
                     /translation="MKILGIDPGSRNCGYAIIEANKGKNTLIEAGLIKIKPSTLQYQI
                     TELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAEYT
                     PLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV"
     gene            3948..5270
                     /gene="dnaA"
                     /locus_tag="SB143_000730"
     CDS             3948..5270
                     /gene="dnaA"
                     /locus_tag="SB143_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEF9749285.1"
                     /translation="MNPNQILENLKKELSENEYENYIAILKFNEKQSKADFLVFNAPN
                     ELLAKFIQTKYGKKISHFYEVQSGNKASVLIQAQSQKHSSKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAISQKDKLGKLYNPIFIYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNNGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYANILGQEITLELAKSVMKD
                     HIKEKKENISIEDILSLICKEFNIKPSDVKSSKKTQNVVTARRIAIYLARELTSLTFS
                     QLANFFVMKDHTAISHSVKKIKELMEDDEQIKTKIEELKNKILTKSQS"
     gene            5435..6502
                     /locus_tag="SB143_000731"
     CDS             5435..6502
                     /locus_tag="SB143_000731"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEF9749286.1"
                     /translation="MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLLFEADEDKLII
                     RASDFEIGINYKIRKIRVESEGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPKTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDRINFVGTDTRRLAVYTLEKANNQEFHISIPKKAIMEMQKLFYEKIEIYYDENML
                     IAKNDNFEFFTKLINDKFPDYEKVIPKTFKQELKFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIETGVSEEFNLNIKIKYLLDFLTSIEEEQFTLSVNE
                     PNLAFVVNSQGLSMVIMPMIL"
     gene            6534..8846
                     /gene="gyrB"
                     /locus_tag="SB143_000732"
     CDS             6534..8846
                     /gene="gyrB"
                     /locus_tag="SB143_000732"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEF9749287.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDIEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDTIFEVTEFDYDILAKRFRELAYLNPKITINFKDNRVGKSESFHFEG
                     GISQFVSDLNKKEALTKPIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDSKITGDDVREGLIAVVSVKVPEPQFEGQTKG
                     KLGSSYVRPIVSKASFEYLSKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYRYKKGQKKEIYLKDEKALNDYLIETGIESSNYEGIG
                     LNDLKDFLKIVAAYRSVLNELKKRFNVISVIRYLIENPDFIKENNEELFKIVKAFLEK
                     EGHNILNHYINENEIRIYVQTENGLEELIINDDLFSHPLYEEANYIFNKIKDRDLSFE
                     KDILDILDEVEKNAKKGAYIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAN
                     DTFNLFMGDEVEPRRDYIQTHAKDVKHLDV"
     gene            9009..9413
                     /locus_tag="SB143_000733"
     CDS             9009..9413
                     /locus_tag="SB143_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEF9749288.1"
                     /translation="MLEVSRRNFLKATALSAVCLSGLNASFLEFSQAKQVKYFIKDSE
                     IPHQGNFINADEILLIEKDISNIYSQLKEAFENKALIGSVSSGTTFFVIRTMAADYGM
                     RVAYEKNKVIFILGFWHQKELNYNFTKKCFAK"
     gene            9382..10940
                     /locus_tag="SB143_000734"
                     /pseudo
     CDS             9382..10940
                     /locus_tag="SB143_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655472.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
     gene            10937..11372
                     /locus_tag="SB143_000735"
                     /pseudo
     CDS             10937..11372
                     /locus_tag="SB143_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790486.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
     gene            complement(11491..13137)
                     /locus_tag="SB143_000736"
     CDS             complement(11491..13137)
                     /locus_tag="SB143_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002837866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation acetate symporter"
                     /protein_id="HEF9749289.1"
                     /translation="MKVFIFLSLIFNLALSAGFDLGEVHQKPINITAVGMFLVFVLAT
                     LFITYYSNKKSKSKSGFYTAGGNITGMQNGVAIAGDYMSAASFLGITALVFTNGFDGL
                     IYSIGFLVGWPIILFLIAEKFRNLGKFTFADITAYRLEAKPIRVISAISALSVIIFYL
                     IAQMVGAGQLIQLLFGLPYTFAVVLVGILMICYVTFGGMHATTWVQIIKAILLLAGAT
                     FMAVMILYLTKFDLKYYFDLAISHHPKGENIMKPGTFLPDTVSALSLGLALMFGTAGL
                     PHILMRFFTVKDAKEARKSVFYATGFIGYFYILTFIIGFGAIALLLGNPQFTNADGSF
                     NGASNMIAVTLADVLGGDVFLGFISAVAFATILAVVAGLAISGAGAISHDLYVNVIKK
                     GDVKHEDEMRVTKIATIAIGIFAILLGIVFEKQNVAFTVGLAFAIAASVNFPILLLCI
                     YWKNLTTKGAFWGGLIGLIVVLALVILSPSIWVKSFGFSEAIFPYDHPALFSMPLSFI
                     LIYIISKLDNSKRAKKDKEGFEAQDFRAQSGVGVSEAVAH"
     gene            complement(13134..13493)
                     /locus_tag="SB143_000737"
     CDS             complement(13134..13493)
                     /locus_tag="SB143_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF485 domain-containing protein"
                     /protein_id="HEF9749290.1"
                     /translation="MNLNAEQKNAVLRFKKFVSFRNKISLNLSLIVLICYYIFVLGIG
                     LMPEILGYKLGPSSITLGIMVGIGLILLCIISTGIYTFIANYFLDKEQEEVIKNLENE
                     GLLDALKDGKINYKELV"
     gene            13724..15025
                     /locus_tag="SB143_000738"
     CDS             13724..15025
                     /locus_tag="SB143_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HEF9749291.1"
                     /translation="MTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGIFSHIEI
                     METMSILIDGMKGNLKTALSYILLGAIAAAISRTNLTAYLIKVVSRFISHKKYLLLLS
                     IALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLPIG
                     FGLNFQDLLRENLEKNGVNVNLADVTNAMYYAAICMVLGLFLALFVFYRKPREYQEIE
                     IQKMDFDNIKMGRKEWGVLVGLILTLVLQIFTMNLPLSGLLGFISMVILGGVEYKSVN
                     DIFDDGLKLMGFIAFVMLVAAGYGEVLKQSGAVNELVNSVVPWMQENKFLAVFLMLLI
                     GLIITMGIGTSFGTIPIIATLFCPICLELGFSAALIIFILGVAGALGDAGSPASETTM
                     GTSVGLSVDKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
     gene            15159..>16708
                     /locus_tag="SB143_000739"
     CDS             15159..>16708
                     /locus_tag="SB143_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HEF9749292.1"
                     /translation="MDLENILENNQSVGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFMTQELGFELPQKGDYAVAQMFLS
                     PNADAKEEAKAIFLQGLKDKNLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPST
                     VNAGLEFERVLYACRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMESEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMGSKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDENNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKQWLKNLVELEKQH
                     SGVYKHKFLKEDEVLKLQKAFGWSYDELKMSVASMAQNGKEALAAMGVDTPLAILSKT
                     YQPLYNYF"
BASE COUNT         5832 a         2592 c         2856 g         5428 t
ORIGIN      
        1 gtcctaaaac atcgcttgta ggattgccta tccttgagta aatattgcca agttcttgaa
       61 gattaaatct cgctgcagcc tgatctaaat tttcaaaatt atacgcagta ttttgatata
      121 taggcacact aatacttctt tgagtgtcaa aattataagc tccatgtaat gctaaagttt
      181 ctttattaaa attcattttt tatccttttt tgttaattaa aaaaatacta aaaagccttt
      241 tatcagcttt aaactagatt gtttggaaat gtaaatttat agaatatgag tatatacgag
      301 tagattaagc gtgccaagca cgcatacaga aagaagaaag cattaagtta aaactaatat
      361 aagacatttt ttctcctttc taaaaaatta ttggctattt tatctttaaa aaataaaaat
      421 aaaattaaat tttaaaaaat ttatatcaca ttgctgaaaa ttttattgca acccacccct
      481 agcaagagtg agttagcaat aaattgaagg cagttcaagc ctaagcctag tattacaaga
      541 ctaccaagat aggcttgtaa agcaaggctt gctcccttaa agggagcaaa aaacaatatt
      601 ttatagaata ctaagcttaa attattgttt aagctggatt agagtttgga gcatttgatc
      661 actcgttgaa atggtttttg aatttgcttg ataacctctt tgaatgataa taagctctgt
      721 taaagaacga cttaaatcca catttgacat ttcaagagct gaggttttca tctcaccacg
      781 acctcctgtt cctgcttcac ctactactat agccccacta tttgcagtga ctttaaaaag
      841 atttccaccg atttcttcaa gacctgagtt atttgctact gaagccattg cgatttttgc
      901 tacagcaaag gttttgccat tagtaaattc acctaagata ttacctttat catccacacg
      961 gatagcatca ggttttaagt tacctgaagt ataaccatca gttgcttgcc ctgttagagt
     1021 tgaagctgaa tttgaactta caagaccatc attgcttcca cttgttccaa aggaaagttt
     1081 gatttgttgg tttggtgcgg caccgttatt gggtgaaaaa tttaaagttt taggattgta
     1141 actagctaaa gagccatcgt tgttaaatct tgctgttcct acgacgatat tgtttggtcc
     1201 ttcacctgta gtgttgatct cagcaggttc aggcacacgg atgatcatct gccattcatt
     1261 acccccatct tgagtggtgc tttgcttgac aaactgcact tctaaagtat gttttgaacc
     1321 taaagaatca taaatttcaa gccccgctga aaatgctgaa agtttgagtt gttcactttc
     1381 tttgatctga cctccgactg ttaaaactcc gtcaaaagct ttaaaaattt tagtaaaggc
     1441 atcattggta cttacagttc cttgtttatt actataagca gttatattaa aactcatatt
     1501 ttttggagtt gtagtaactg cattagcttg accattaata gcatttccag gcactgttga
     1561 atcttcttta gcattagaga tagcaaaatg tccatctgcc gttactacta cttttatatt
     1621 ttgattaata tcagctgcag caaaagttcc acttccatca taatcaaccc catatctagc
     1681 atccctttgt aaaagttctc ttaaatcttc tgtggttcta aaagttctta cattagtatt
     1741 taaaagtcca ccattaacag catcccaata agctgctgaa cctggttcag ttggtcttgt
     1801 atttgcatta gcaccaggct ggaatgctgg tccaccgtca ggattataca taggacctat
     1861 atccacaggg tttgaactat aaatatattt atgtgctgtc accactttaa cattttgcgg
     1921 ttgacctaat tgagctgctc cagctatcca atcggtatca ttctgagcag ttgttaaatt
     1981 accttgagga gaaaaaacac ccgtattagc attataatta atagtatttc tttctcctgc
     2041 agaattccca acatttactg ttaaatcaat atttttcata ttatctgttg tgccatcagc
     2101 attatcattt acaaattcta tacccgagcc atctgctttt tttacagctt taacccctgt
     2161 tccatccctt gtatccgttg gtgcggtaaa ggtattgata taagctatag cttcatctaa
     2221 acttcttata ttattatttt gaattcttat tccatttaaa ttaatatcta aagttacagc
     2281 tatgtcttta ttaccccaaa aaataacatt attttgttgt gctattgttg aattaggatc
     2341 aaagacattt gcattattgg ctttatcagt agtaaattta gcatctgcat aagaaaccca
     2401 aattccttgt ccatctctaa gattaagtcc ttgtcctttc gcgttaaaaa gcgagcctgc
     2461 atctacacct ttttccgtca cttctacaga attcttagaa gtcgtgtaaa actgagtggt
     2521 tcctgtatca ttttcatctt cggctctttg ggttttagta ttccatccat gaacagaatc
     2581 aagtgcataa agatttctac ttgaagttcc tatatttaaa ccgctattta aatttgcttt
     2641 gacagctact tcagttgatt tagccgcagg gatatgcatg cctggatcga taaaaatatt
     2701 ttttggtgtt cttgaactgt ctatagtttg atcatcccag ttgatattcc acccttgaac
     2761 tacaaaaccg gcattattaa caaaatttcc ataagcatca agtttaaaat ccccgctcct
     2821 tgtaagatag cgagtaagcc ccccatcatc actcaccata aaaaaaccat caccatttat
     2881 agcaacgtca gtgtttttat ctgtggtttg aactgaacct tgagaatgaa ttctagttgt
     2941 agaacttact gaaacgccaa gaccgatttg aagtggatta gatccacctc ttccatcagt
     3001 tggagctgta gcgattttca cagtttggct aaacatagtc ccaaaatctg cacgggagta
     3061 tttaaaacca gtggtattaa catttgaaat gttattacct tcaacatcca tcgcaacttg
     3121 atgtgcttgt agtccgctta cgccagacca aagtgatctc atcatcttaa atcctttata
     3181 aaatattgct ttaaaaaatt taacgctttg gctttaaaaa acttttgcgt ttatgtgaag
     3241 tttacaagca agttctgttc caacttttga aattttttat gaatttttta aaaatttata
     3301 gaaaaaattt aaaggtattt tgggagttta tgaagctttg gtcttttgtg taatgaaaat
     3361 taccaaaatc acaccctaac tcttaaattt gccgcatggg ttaaagctac tgcaatagca
     3421 tctgtgatat ccaaaggctt gatatcttta ctcagtccta aaagcctttt taccataaaa
     3481 gcaacttgtt ctttggttgc tttggctttt cctgtgacgg cttttttcac ttgtaaggga
     3541 gtgtattctg caaagtctcc atgaatttga agaattttta aagatagagc tccgcgaaat
     3601 tgtgcgagtt ttaaaacggt ttttggattg taagcaaaaa agatatcttc tatagccacc
     3661 tcatcaaaag aatgattttt aaaaatcaag tccaaaccct cacaaagctc tgtgatttga
     3721 tactgtaaag tactgggttt tatctttata agtcctgctt cgattagggt atttttacct
     3781 ttatttgctt ctatgatagc ataaccacaa tttcttgaac caggatctat gcctaaaatt
     3841 ttcaatcttc caccttaatc aataatgaaa tgcaaaagct tgattttaac ctttttttat
     3901 aaaatttaag ataaaattta taagcttaca aagactaaag agagattatg aatccaaatc
     3961 aaatacttga aaatttaaaa aaagaattaa gtgaaaacga atacgaaaat tatatcgcta
     4021 tcttaaaatt taacgaaaaa caaagcaaag cagattttct agtctttaac gctcctaatg
     4081 agcttttagc caaattcata caaacaaaat acggtaaaaa aatttcacat ttttatgaag
     4141 tacaaagcgg aaataaagcg agcgttttga tacaagcaca aagccaaaaa catagtagca
     4201 aaagcactaa aatcgatatc gctcacatca aggcgcaaag tacgatttta aatccttctt
     4261 ttacttttga aagctttgta gtgggggatt ctaacaaata cgcttatgga gcttgtaaag
     4321 ctatctcaca aaaagacaaa ctgggaaaac tttataatcc tatctttatc tatgggccta
     4381 cagggcttgg aaaaacgcac ttgcttcaag ctgtgggaaa tgcaagtttg gaaatgggaa
     4441 aaaaagtgat ttatgctacg agtgaaaatt ttatcaatga ttttacttca aatttaaaaa
     4501 atggctcttt agataaattt cacgaaaaat atagaaattg tgatgtttta ctcatagatg
     4561 atgtgcaatt tttaggaaaa acagacaaaa ttcaagaaga atttttcttt atatttaatg
     4621 agattaaaaa caataatggg caaatcatca tgacaagtga taacccaccc aatatgctaa
     4681 aaggtatcac cgaacgctta aaaagtcgat ttgctcatgg tatcatagca gatatcactc
     4741 cacctcaact ggatacaaaa atagctatca tacgcaaaaa atgcgaattt aatgatatca
     4801 atctttctaa tgatatcatt aattatatcg ccacttcttt aggggataat ataagagaaa
     4861 tagaaggtat catcataagc ttaaatgctt atgctaacat acttggacaa gaaatcaccc
     4921 ttgagctagc aaaaagcgtg atgaaagatc atatcaaaga aaagaaagaa aatataagta
     4981 tagaagacat tttatctttg atctgtaaag aatttaacat caaaccaagt gatgtgaaat
     5041 ctagcaaaaa aactcaaaat gtcgttactg caagacgcat agcaatctac ctagcaaggg
     5101 aacttacaag ccttactttt tcacaacttg ctaacttttt tgtgatgaaa gatcacacag
     5161 ctatttcaca tagtgtgaaa aaaataaaag aactcatgga agatgatgag caaataaaaa
     5221 caaaaatcga agaattaaaa aacaaaattc ttacaaaaag tcaaagttaa gtgaagaaat
     5281 gtgaaaagaa aaaaagcaaa atgtgaaaaa atataattaa gcaaaatatg gtaaaataca
     5341 aatttaataa ttttttgcta aagaatttca caatttcaat agtcttatta ttacaatgaa
     5401 tttaaattat atataataaa accaaggaga aaaaatgaaa ctaagtatca ataaaaatac
     5461 ccttgaatca gcagtacttt tatgtaatgc ctatgtagaa aaaaaagatt ctagcaccat
     5521 cacttcacat ttactttttg aagctgatga ggataaactt atcattagag cgagtgattt
     5581 tgaaataggg ataaactata aaataagaaa aattcgcgta gaaagcgaag gttttgctac
     5641 tgcaaatgca aaaagcatag ccgatgtgat aaaaagctta aacaatgaag aagtggtatt
     5701 agaaaccata gacaattttt tatttataag acaaaaaagt acaaaataca aacttcctat
     5761 gtttaatcat gaagattttc caaatttccc taaaacagaa ggtaaaaacc aatttgacat
     5821 tgattcaagt gatttaagta gatctcttaa aaaaattcta ccaagcattg atactaacaa
     5881 ccctaaatat tctctaaatg gtgcattttt agatataaaa acagatagaa taaatttcgt
     5941 tggaaccgat acaagacgcc ttgcagttta tactcttgaa aaagcaaata atcaagaatt
     6001 tcacatcagc attcctaaaa aagctatcat ggaaatgcaa aaactttttt atgagaaaat
     6061 cgaaatttat tatgatgaaa atatgcttat cgctaaaaat gacaattttg aattctttac
     6121 aaaacttatc aatgataaat tccctgatta tgaaaaagtt atcccaaaaa ctttcaaaca
     6181 agaacttaaa ttttcaactg aagattttat agatagtctt aaaaaaatca gtgttgtaac
     6241 tgaaaaaatg aaacttcatt tcaacaaaga taaaattatc tttgaaggta taagcttaga
     6301 taatatggaa gcaaaaaccg aacttgaaat cgaaacagga gtaagtgaag aatttaatct
     6361 taatatcaag ataaaatacc tacttgattt cttaacttca atcgaagaag aacaattcac
     6421 tttaagtgta aatgaaccta acttagcctt tgtagtaaat tctcaaggct tatctatggt
     6481 tatcatgcct atgattttat aaaaacttaa aatcttgagt taaaaggaaa aatatgcaag
     6541 aaaattatgg tgcgagtaat attaaagttt taaaaggctt agaagctgtt agaaaacgcc
     6601 caggtatgta tataggagat accaatatag gcggacttca tcatatgatt tatgaagtag
     6661 tggataattc tatcgatgaa gcaatggcag gacattgtga tactatagat atagaaatca
     6721 ctaccgaagg aagctgtatc gttagcgata atggtcgtgg aattcctgta gatatgcacc
     6781 ctactgaaaa tatgccaacc ctaaccgtcg ttttaaccgt tcttcatgca gggggaaaat
     6841 tcgataaaga cacttataag gtttcaggag gtttgcatgg tgtgggcgtt tcagttgtaa
     6901 atgcactttc taaaaaactt gtagctacag ttgaaagaaa tggagaaatt tatcgccaag
     6961 aattttcaga aggtaaagtc atcagtgaat ttggtgttat aggaaagagc aaaaaaacag
     7021 gaactaccat agaattttgg cctgatgata caatttttga agtaacagaa tttgattatg
     7081 atattttggc taaaagattt cgtgaacttg catatttaaa tccaaaaatc actataaatt
     7141 ttaaagataa tcgtgtaggc aaaagtgaaa gttttcattt tgagggcgga atttcacaat
     7201 ttgttagcga tttaaataaa aaagaagctt taaccaaacc tatatttttt agcgtagatg
     7261 aagaagatgt aaatgtagaa gtagctttgc tttataatga tacttatagc gaaaacttgc
     7321 tttcttttgt aaacaatatc aaaacccctg atggtggaac gcatgaagct ggatttagaa
     7381 tgggtttaac aagagtgatt agcaactaca tagaagcaaa tgctagtgct agggaaaaag
     7441 actctaaaat cacaggcgat gatgtgcgtg aaggacttat cgctgtagta agtgtaaaag
     7501 tgcctgaacc tcaatttgaa ggacaaacta aaggaaaact tggctcttct tatgtgcgtc
     7561 ctatagtttc aaaagcaagt tttgaatatc ttagtaaata ttttgaagaa aatcctatcg
     7621 aagcaaaagc tattatgaat aaagctttaa tggcagctag aggaagagaa gcagcaaaaa
     7681 aagcaagaga attaacgcgt aaaaaagaaa gcttgagtgt aggaacttta ccagggaaat
     7741 tagctgattg tcaaagtaaa gatccaagtg agagtgaaat ttatcttgtg gaaggggatt
     7801 ctgcaggagg ttctgcaaaa caaggtagag aaagatcttt ccaagctata ctgcctttgc
     7861 gtggtaaaat tttaaatgtt gaaaaagcaa gattagataa aattttaaaa tctgagcaaa
     7921 ttcaaaatat gattaccgct tttggctgtg gtataggtga ggattttgat ctttcaaaac
     7981 ttagatatca taaaatcatc atcatgacag atgcggatgt tgatggatca catatacaaa
     8041 ccttgctttt aactttcttc ttccgtttta tgaatgaact tgtggctaat ggacacattt
     8101 atcttgccca accaccgctt taccgctata aaaaaggtca aaagaaagaa atttatctca
     8161 aagatgaaaa agctttgaat gattatctca tcgaaacagg tattgaaagt tctaattatg
     8221 aaggaattgg cttaaatgat ttaaaagatt ttctaaaaat cgttgccgct tatcgctcgg
     8281 tattaaatga gcttaaaaag cgtttcaatg tgatttctgt gattagatat ttgatcgaaa
     8341 atcctgactt tatcaaagaa aataatgaag aactttttaa aatcgttaaa gcttttttgg
     8401 aaaaagaagg gcataatatt ttaaatcatt atatcaatga aaatgaaatt cgcatttatg
     8461 tgcaaactga aaatggtttg gaagaactta tcatcaatga tgatttattt tcacaccctc
     8521 tttatgaaga ggcaaattat atctttaata aaataaaaga tcgtgatttg agctttgaaa
     8581 aagatatttt agatatctta gatgaagtag aaaaaaatgc caaaaaaggt gcttatatcc
     8641 aacgctataa aggtttgggt gaaatgaacc ctgaacaact ttgggaaaca actatggatc
     8701 caagtgtaag aagactttta aaaatcacta tcgaagatgc acaaagtgct aatgatactt
     8761 ttaatctctt catgggcgat gaggttgaac caagacgcga ttatatccaa acacatgcta
     8821 aagatgtaaa acatttggat gtgtaaaaat tttttagtgt cagattgtaa atttgacact
     8881 aaattctatc tttttgttta aaaatttcac actttgttac aataattcat attttatctt
     8941 tactcaaatt attttttaaa tttatagatt tataatttgt aatactaaat acttaaaacg
     9001 attaattcat gttagaagtt tcgcgtagaa attttttaaa agctacggct ttaagtgctg
     9061 tttgtctttc tggtttgaat gcttcttttt tggaattttc tcaagctaaa caagtgaaat
     9121 attttatcaa agatagtgaa attcctcatc aaggaaattt cattaacgcg gatgaaattt
     9181 tacttattga aaaagatatc agcaatattt actcacaact taaagaagct tttgaaaata
     9241 aagcactcat tggaagtgtg agtagtggga caactttttt tgtgatccgc actatggcgg
     9301 cggattatgg tatgcgtgtt gcgtatgaaa aaaacaaggt gatttttata cttggatttt
     9361 ggcaccaaaa ggagttaaat tataatttta ccaaaaaatg tttcgcaaag tgattttaca
     9421 gctgcagtag caaaatttga aaaagctttg ggtaaagagt gggtatttaa aacctaagag
     9481 gatttagatc tttatagaga tgcgtatagc ccgcaatggg atgatgatga cgaacctatc
     9541 ccttctttag cgcttgcacc taaaaatgtg gaagaagttc aagctatagt taaaatagca
     9601 aatgaattta aaattcctct ttttcctatt tccacaggta agaatttagg ctatggttct
     9661 tctgcaccac agcaaagagg gcaggttgtt gtagatttaa aaagaatgaa taaaatcatc
     9721 gaagtagatg ataaaagaaa tttctgtatc gttgaacctg gggtgagtta ttttgatctt
     9781 tataagtatg tagaaaaaac aatctcaatg tttttttaga tattcctgat ccaggttggg
     9841 gatatagcta tgggatgtat cgtgatcact ttggctcgca ttgtgggatg gaagttgttt
     9901 tggctaatgg agaaatttta cgcacgggta tgggtgcttt accaaaagct aagactttcg
     9961 cagaaaataa atacggctat ggtccttatg tagatggact tttttcacaa tctaatttcg
    10021 gtatcgttac aaaaatgggc ttttggatga tgccaaaacc agagcattat atgcttttat
    10081 ctataaaaat gaaaaaacgc gaggatttga tcccagcggt tgaaatttta aattatcttg
    10141 aggatagttt tattgtgggt tggccgcagt attttagtcc attaaatcca ccttatggaa
    10201 aaccgatgaa tgcggagtta aaaggctatc ttacaagtaa aaatggctta cctgatatgg
    10261 ataaaattca aaattatgct ttgaaaaata aaatccctta ttggaatatc gatgtttcag
    10321 tttatggctg taaagaagtg tgctatgcaa atttagaata tatcaagcaa agatttaaaa
    10381 tcattgaagg tgtagatatt tctatcgttc aagaatttag tttacctttg aatttggagc
    10441 aaaaaaagca gcttaaacat aaggttactc ttggaattcc aaatatggaa attttttggc
    10501 ttagcacaag aggtgaggtt ttagaaccaa gtgatgggta tgtatggttt tcacctatta
    10561 ttccacgcga tggtaaagaa cttttaaaat gccaagaagt gtatatgaat ttatttagag
    10621 aatttgggga agaatctcct ataacacctt tttcgcatcc tagaagttgg atgtatcgtg
    10681 cattttgctt tatgttagcc tttaataact caagaaccga taaagcacac aattaaaagt
    10741 gcgtaaaatg tatcgtcaaa tggttcaaac tgctgcagaa catggatggg gagattatcg
    10801 cgcagcttaa agattgtatt gatccaaatg gaattttagc acctggtcgt ggaggcattt
    10861 ggcctaaaaa tttaagagat gagcgttttg ttaataacaa acgcgacgca ttaagaatga
    10921 aagaaggtaa agaaaaatga aaaaaatcgc tttatttttt gttttatttg tttgcttgct
    10981 gaatttaaat gctaaggata aagaatggtt gccaaagggt gaatctataa gtgtttatga
    11041 gtatattcca aacaatccaa gatcccctgc agcattttca agcgttgata gtaaaaaatt
    11101 aaatgcaaat caaagaaagg gacagcaagt ttatagtaag tggtgtatag catgtcatgg
    11161 cgagggaatg cctgggacaa acgcactttc agctctttat aaagatccaa ggaattcctg
    11221 cgcttttaga agatagaacg gatttaagcc ctgatttggt aacaattttt gtgcgttatg
    11281 gtaaacattc aatgccgttt ttccgtaaaa ctgaaatcag cgataaagaa ttgcagtatt
    11341 taggtgagta tttgggtaga aactacaaat aaagataaac tctaaaggac tttatgttaa
    11401 gtaaagtcct aaaatacttt tctaatgaga atatttactg gtttaaattt aaaaaagctt
    11461 ctgtgctaaa tgcaaagaag ctttttttgt ttaatgcgcc acagcttcac ttactcccac
    11521 accgctttga gctctaaaat cttgtgcttc aaaaccttct ttatcttttt tagctctttt
    11581 agaattatcc aattttgaaa tgatataaat gagtataaaa cttaaaggca ttgaaaataa
    11641 agcaggatga tcataaggaa aaatagcttc actaaaacca aaacttttta cccatatact
    11701 agggcttaaa atcacaagag caagaacgac tataagtcct ataagtccac cccaaaaagc
    11761 gcctttagtg gtaagatttt tccaataaat acagagtaaa agtataggaa aatttacact
    11821 cgcagcaata gcaaaagcaa gtcctacggt aaaagcaaca ttttgttttt caaagacaat
    11881 gcctagcaaa atagcaaaaa ttcctatagc tatagttgcg atttttgtaa ctctcatttc
    11941 atcttcatgt ttgacatcac cctttttgat aacattgaca tataaatcat gacttatagc
    12001 tcctgcacct gaaatcgcaa gtcctgcaac gactgctaaa atagtagcaa aagctactgc
    12061 tgaaataaat cctaaaaaga catctccacc caaaacatca gctaaggtaa ctgctatcat
    12121 attactagcc ccattaaaac ttccatcagc gttagtaaat tgaggattac caagtaagag
    12181 cgctatagca ccaaagccta tgatgaaagt aagtatgtaa aaatacccta taaatcctgt
    12241 tgcataaaat actgactttc tagcttcttt agcatctttt acggtaaaaa atcgcataag
    12301 tatatgaggt aaacctgcag ttccaaacat aagagccaag cctaaagaaa gagctgatac
    12361 ggtatcaggc aaaaaagtcc ctggtttcat tatgttttca ccttttggat gatgagaaat
    12421 ggctaaatca aaataatatt ttaaatcaaa tttcgtaagg tataaaatca taacagccat
    12481 aaaagtagcc cctgctagaa gtaaaatggc tttgatgatt tgcacccaag tggttgcgtg
    12541 cattcctcca aaggttacat aacaaatcat taaaattccg accaaaacaa ccgcaaaagt
    12601 gtaaggtaaa ccaaaaagca attgtatgag ttgtcctgct cctaccattt gagcaataag
    12661 ataaaagata ataacgctta aagcagaaat agctgatata acgcgtatag gcttagcttc
    12721 taaacgataa gcggtaatat ctgcaaaggt aaatttgcca agatttctaa atttttctgc
    12781 aattaaaaat aaaataatag gccaacccac taaaaatcct atagaataaa taagcccatc
    12841 aaagccatta gtaaaaacta aagcggtaat tccaagaaag cttgccgcac tcatataatc
    12901 ccccgctata gctacaccat tttgcattcc tgtgatattt cctccggcgg tataaaatcc
    12961 acttttggat ttggattttt tgttagaata ataggtgata aacaaagtag ctaaaacaaa
    13021 gactaaaaac ataccaacag cagttatatt tataggtttt tgatgaactt ctcctagatc
    13081 aaaaccggcg cttaaggcta aattaaagat taaacttaaa aatataaaga ctttcatact
    13141 agctccttat aattgatttt tccatctttt aacgcatcaa gcaacccttc attttccaag
    13201 tttttaatca cttcttcttg ctctttatca agaaaataat ttgcgataaa agtgtaaatt
    13261 cctgtggaaa taatacacaa taaaatcagg ccaatgccta ccataatacc aagcgtgatg
    13321 gaactaggac ccagtttata ccctaaaatt tcaggcataa gtcctatacc taaaacaaag
    13381 atatagtaac aaataagcac tatcaaagat aggttaagag atattttgtt tctaaaagaa
    13441 acaaactttt taaatctcaa aacagcattt ttttgctccg catttaaatt catgggtact
    13501 cctttcaatg tttataattc aatataacaa aaaattcaat gaattaaggc tttttatttt
    13561 aaaaatttgt gtaataatag aatttttatc ttaaatatga aaaaaagtaa catatattta
    13621 tcaatgttac taaaatttac atattaattc attgataatt tttatctcat tttaaaaaat
    13681 ttttctttag aattaagctt ttataaattc acaaggaaaa attttgaccc tgcttacaaa
    13741 tcctatcatc atcagtgtag ttttgatgac tttactttgt ttatttcgtt ttaatgtact
    13801 tttgagtctt ttgatttctg ctttagttgc tggaattttt tctcatattg agattatgga
    13861 aactatgagt attttaatcg acggaatgaa gggaaattta aaaaccgctt taagttatat
    13921 acttttaggt gctattgctg ctgcgatttc aaggacaaat ttaacagctt atttgattaa
    13981 ggtagtcagt cgttttatct ctcataaaaa atatctttta cttttgtcca tagctttgat
    14041 ttcttgtttt tcgcagaatt taattcctat tcatgtggcg tttattcctt tgctaatccc
    14101 accacttcta agtcttttta ataaattaaa aatcgatcgt agggctgttg cttgtgcttt
    14161 aacctttgga cttacgacac cttatatggt tttgcctata ggttttggac ttaacttcca
    14221 agatctttta agagaaaatt tggaaaaaaa tggggttaat gtcaacttag cagatgtaac
    14281 aaatgcgatg tattatgctg ctatttgtat ggtgttagga ctttttttag cgctttttgt
    14341 attttataga aaaccaagag aatatcaaga aatagaaatt caaaaaatgg attttgataa
    14401 tatcaaaatg ggacgcaaag aatggggcgt tttagtaggg cttattttga ctttggtttt
    14461 acaaattttt acgatgaatt tacctttatc agggcttttg ggctttattt ctatggtgat
    14521 tttgggcgga gttgaatata aaagtgtcaa tgatattttt gatgatggac ttaaattaat
    14581 gggctttatc gcttttgtta tgcttgtagc agcgggttat ggagaagttt taaaacaaag
    14641 cggtgctgta aatgagcttg taaattccgt agtgccttgg atgcaagaaa ataaattttt
    14701 agcggtattt ttaatgcttt taataggtct tattattacc atgggtatag gtacttcttt
    14761 tgggactatt cctatcatag ctacactttt ttgtcctatt tgtttagaac ttggttttag
    14821 cgcagctctt atcatattta tcttaggggt tgcaggggcc ttaggagatg caggaagtcc
    14881 agcaagtgaa acgacgatgg gaacgagtgt gggattaagt gtagataagc aacacgatca
    14941 tataaaagat acttgtattc ctacttttat tttttataat gggcctttgc tgattttagg
    15001 aagtatcata gcgatgtttt tataattttt ataaatccat tgaaatattt tttaatttat
    15061 ttatttttaa gataaaaaat atctcgatat taaaaaaata tatgttataa tccttaacaa
    15121 gctatcaaat ttaaaatcaa tcttataagg agaataaaat ggatttggaa aatatcttag
    15181 aaaacaatca aagcgtaggt ttatatcacc ctaaaaatga acacgatgcc tgtggtattg
    15241 ccgcagttgc caatatacgc ggtattgctt cttataaggt tatttgtgac gctttagaaa
    15301 ttttgatgaa tcttgaacac cgaggcggtg cgggagctga agaaaattca ggtgatggag
    15361 cgggaatttt gattcaaatt cctcatgatt ttttcatgac tcaagagctt ggttttgagc
    15421 ttcctcaaaa aggtgattat gctgtagcgc aaatgttttt atcgcctaat gcagatgcta
    15481 aagaagaagc aaaagcgata tttttacaag gtttaaaaga taaaaattta gaatttttag
    15541 gttttagaga agtgcctttt aatcctagcg atataggagc aagcgcttta aaagctatgc
    15601 cttatttttt acaagctttt gtaaaaaaac caagcacggt taatgcagga cttgaatttg
    15661 aaagagtact ttatgcttgt cgtcgtctta tagaaaaaag agctattaat gtgcctaaat
    15721 tttatttttc aagcttttct tcacgcacta tagtttataa aggaatgctt ctttctactc
    15781 aattgagtga tttttatctt gattttaaag atgtcaatat gaaatcagcc attgctttgg
    15841 tgcattctcg cttttcgact aatacttttc caagttggga aagagcccac ccaaaccgtt
    15901 atatggtgca taatggagag attaatacca tacgcggaaa tgttgatagc ataagagcta
    15961 gagaaggttt gatggagagc gaatattttg aaaatttaga tgaaattttt cctatcatag
    16021 caaaaccaag tagtgattct gctatgtttg ataatacttt agaattttta gctttaaatg
    16081 gacgcacttt agaagaagct tttatgatga tggtgccaga accatggcat aaaaatgaga
    16141 acatgggaag taaaaagcgt gctttttatg agtatcattc tttattgatg gagccttggg
    16201 atggacctgc tgctatagtt tttactgatg gggttatcat gggggcgagt ttagatagaa
    16261 atggttttcg tccttcaaga tattatctta caaaagatga tatgctcata ctttcaagcg
    16321 aaacaggagc tttaaaactt gatgaaaaca atatcaaagc taaaaaacgc ctagaacctg
    16381 gaaaactttt acttgtagat actgcaagag gtagagtaat agctgataat gaaatcaaag
    16441 agcattatgc taatgcgaag ccttataaac aatggcttaa aaatttagta gagcttgaaa
    16501 aacaacacag cggggtttat aaacataaat ttttaaaaga agatgaggtt ttaaaacttc
    16561 aaaaagcttt tggatggagc tatgatgagc ttaaaatgag tgtagcaagt atggcacaaa
    16621 atggcaaaga agctttagcg gctatgggtg tggatactcc tttggctatt ctttctaaga
    16681 cttatcagcc tttgtataat tattttaa
//
LOCUS       DARAII010000027        16695 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.027, whole genome shotgun sequence.
ACCESSION   DARAII010000027 DARAII010000000
VERSION     DARAII010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16695)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16695)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16695
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.027"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..455)
                     /locus_tag="SB143_000740"
     CDS             complement(<1..455)
                     /locus_tag="SB143_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEF9749293.1"
                     /translation="MQRKRIYNPGSNETLTDRKVFSGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLR"
     gene            complement(470..880)
                     /locus_tag="SB143_000741"
     CDS             complement(470..880)
                     /locus_tag="SB143_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEF9749294.1"
                     /translation="MKTKAKIASRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NSYITALCTFLFGFIQALFLASKAQSPGLKAYDLYLIDLKTGKKITFFRILLRYIIFI
                     ISFGLIFGLFISFLRKDKLNLHDILTQTCIVTKI"
     gene            complement(881..1489)
                     /gene="pyrE"
                     /locus_tag="SB143_000742"
     CDS             complement(881..1489)
                     /gene="pyrE"
                     /locus_tag="SB143_000742"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEF9749295.1"
                     /translation="MDLEQIYKDCGAYLQGHFLLSSGKHSEFYLQSAKVLENPKLAAR
                     LCDELAKIIAEFNIEFDSICSPALGGILAGYELARACDKRFIFTERVNGEMTLRRGFE
                     VKEGERFIICEDIITTGGSALESAKIIESLGGKVLGFAALANRGFCAVENLKNPRKPS
                     AKLPDNLPLFTLGNFDFQIYDENDCPFCKEGSKAIKPGSRGN"
     gene            complement(1492..2049)
                     /gene="frr"
                     /locus_tag="SB143_000743"
     CDS             complement(1492..2049)
                     /gene="frr"
                     /locus_tag="SB143_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEF9749296.1"
                     /translation="MINEILNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHIQVDY
                     YGSLTPLNQVATVLASDASTISITPWEKPMLKTIESAIAAANIGVNPNNDGESVKLFF
                     PPMTREQREENVKQAKAMGEKAKVSVRNIRKDANDAVKKLEKDKAISEDEAKKAYDEV
                     QKLTDTYTAKIDESVKNKESELLKV"
     gene            complement(2066..2422)
                     /gene="secG"
                     /locus_tag="SB143_000744"
     CDS             complement(2066..2422)
                     /gene="secG"
                     /locus_tag="SB143_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEF9749297.1"
                     /translation="MITLLTILQFVIVVIICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFIMGILLIANTIGLGYLYNSTSKDSLAEKIKIETNTSIPTAPNAINVP
                     AIPSAPQIPNESNTSK"
     gene            complement(2529..3224)
                     /locus_tag="SB143_000745"
     CDS             complement(2529..3224)
                     /locus_tag="SB143_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEF9749298.1"
                     /translation="MSLYDRDYSRSREFENTRSSELGIFIKQTYQLFAASLLAATVGA
                     YVGIYALAAFFIQSQVTFWILFAVEIGLLIALQFKKREAPLNLILLFGFTFCSGLTLT
                     PLLISVLALPAGGVIIAQAFALTTVAFAALSIFAMNTKKDFTLMGKALFIVLIVVVAA
                     SLLNIFFQSSLLNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            3383..4018
                     /locus_tag="SB143_000746"
     CDS             3383..4018
                     /locus_tag="SB143_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEF9749299.1"
                     /translation="MDNLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGQDYLATTSAIEYALNSLRIKNIVVCGHSN
                     CGGCNALYYSDEELDKIPNVKKWLTMLDPIKRDVTIFARDDIAMRSWLTEKLNLVNSL
                     QNIFTYPGVQEALDEGRLEVHAWYYIIETGEIYEYDFKAKIFKLIQNRKTQ"
     gene            4015..5898
                     /locus_tag="SB143_000747"
     CDS             4015..5898
                     /locus_tag="SB143_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEF9749300.1"
                     /translation="MKKIIILFLLGISCLWGDEFRLIDTNASAQDKSVYSLVQKYIDL
                     NHQIKEFKKNNDENSSSYDGILSEFEKDKKSILSKMPDMIVKQQINEKAVESFLKTRQ
                     NLLDLQKKSINKPYVYVDTTLNIMYLDVVKSFYSSLFELERLFKNAANSESIISTVDK
                     AMENLQNSTNIDLSIYKAKINNPSELEKISNKEEMIFNAVDAYVEILKYLRANADLLE
                     SNYIFSLLELQVWIDRINEMANIDFINTGKIVISILVLVFFMSLRRFFSNIVYFILVR
                     LVYRNKSDADDIKVIFIDNIKKPVGFLLICYAISLCLTIATYPAPLSINLSNLFHIVY
                     AVLIAWLILRILDGYGVVLVSKLAQKSGKKEVVNLVIKILYFVIFVIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGVEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLENCVK
                     DLKELLYTSPLVAHEDDGALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(5921..6892)
                     /locus_tag="SB143_000748"
     CDS             complement(5921..6892)
                     /locus_tag="SB143_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEF9749301.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDTIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHTVEEITQYTKAGAFCKSCIKPGGHEKREYYLVDILAE
                     TRAEMDREKLKNAVKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(6904..8085)
                     /locus_tag="SB143_000749"
     CDS             complement(6904..8085)
                     /locus_tag="SB143_000749"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEF9749302.1"
                     /translation="MKVYLDNNATTMLDPSAYELMLPFLKDMYGNPNSLHQWGSATHP
                     ALREAMDKLYAGLGANDLDDIVITSCATESINWVLKGIYFDHILDKERNEVIISSVEH
                     PAVAAAAQFLKSLGVKLIELPVNEEGVSTPQDLQNVISDKTALVSVMWANNETGMIFD
                     IQKMAEIAHEFGALFHTDATQAVGKIKVNLNQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAENDLAHTALRLSLSRFNTEEEIDYAAKQIKAATERLRAISCTYAYNPNNY
                     K"
     gene            complement(8261..9427)
                     /locus_tag="SB143_000750"
     CDS             complement(8261..9427)
                     /locus_tag="SB143_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749303.1"
                     /translation="MTINSANPYQNLALSNPLQNSQALNLIKDKKGSNLEENENNLEN
                     LNYIFNTTSYASEFSFRIDEKGFFEKDLNKIANIPESYNINIKSVRNIAKELTRQDAT
                     LNYNKIDLPYLLNSYYSSLKSVNLEFSENDNANLSRDMISKFATGFSTENGEFLGKIS
                     RIYNNQEELNSALNKTLSLNTLMLDNKITNFHFDRALNNTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNDNELNFFMKPASLDLNAHTNFQKILRGEMDIKDYIKQQNEQK
                     MSFDLYLYVNGVDKKTASQDKLSVFFQQYVNYQKDMDLREFANSSSIFQIYIDENHSE
                     FNSLKEEYQSQNKDLEKLDNANNMRSSSIENFLDRRQKQANLNKILNSYLSVLL"
     gene            9580..9771
                     /gene="rpmI"
                     /locus_tag="SB143_000751"
     CDS             9580..9771
                     /gene="rpmI"
                     /locus_tag="SB143_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEF9749304.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            9865..10218
                     /gene="rplT"
                     /locus_tag="SB143_000752"
     CDS             9865..10218
                     /gene="rplT"
                     /locus_tag="SB143_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEF9749305.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSKFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            10505..11368
                     /locus_tag="SB143_000753"
     CDS             10505..11368
                     /locus_tag="SB143_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HEF9749306.1"
                     /translation="MATDMNEILLRSVEVLPPLPDTINKLRKYINESGSNVKIDEIAN
                     IISSDPLMTAKLLRLANSPFYGFSREITSLAQVVSLLGIGNIVNTIMADSIRDSFKID
                     VSPYGLSTTEFVNKCSEETSFIMDWLGNEDKKLSHLLVPCSMLLRLGIVVFSNFLIQN
                     KKDAEFLARLEKNNFSDLSMVENEFLGVDHISFLGFLLYRWKFDDMLVETICFARSPH
                     AARNEVKKSAYALSVVDHLFTPHNNFSSFNIKASIALINEARSQGIDFNLDNFISKLP
                     KEAKENLIKEG"
     gene            11390..11866
                     /gene="cheQ"
                     /locus_tag="SB143_000754"
     CDS             11390..11866
                     /gene="cheQ"
                     /locus_tag="SB143_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEF9749307.1"
                     /translation="MKSIILPPNEFLDHYVLNAEFHRLAGISKNAYKFWKKVEIGRYQ
                     GTRIIFLHKNSILEKHREVLKQCSDLSGFVLASAFCSFTGLAPSHLVKKNNSSIYKLL
                     DLKEIHGIKFVNLKKFYDFLGLNYYQHIYIEKCHFFSPTPFEKRIKITESMCVGYY"
     gene            complement(11835..13145)
                     /locus_tag="SB143_000755"
     CDS             complement(11835..13145)
                     /locus_tag="SB143_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749308.1"
                     /translation="MRKILSKKDIKTLGLSSLGGALEFYDFIIFAFFSSYISKNFFPE
                     NLSPFWQLFNTYGIFAAAYVVRPLGGIVMAHFGDKFGRKKMFMLSILLMVIPTFALAF
                     IPSYESIGYLCVVFLMLIRIAQGISIGGELPGAWIFVYEHSPQGQRRTYIGFLTASVV
                     GGILLGSIVFLLMHKIYTQEELYEWAWRVPFFLGGIFGLISIYLRKFLSETPVFEQMR
                     KENVLEKFPLKEVFKRAKAGVLISMLITWVLTGCIIVMILFIPKYMAEILQFDTNFQT
                     YLQMGGIFFISLGCIISGILADKIGIFKSSIIFSLFFGLACAFYFHFLYNTNADITLV
                     SIFYLLACLFGGVMNFCPLIMNEAFEAKIKFSGLSFSYNIAYAIAGGITPQLTLLLHK
                     FAFANLDNAWRFSLGYYMFLIVLLALLSAFIFRYLNNTQRTYSQ"
     gene            complement(13148..13300)
                     /locus_tag="SB143_000756"
     CDS             complement(13148..13300)
                     /locus_tag="SB143_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEF9749309.1"
                     /translation="MAYDDEDLEFDDYEGEEDEYAHNHHKSYNYDDDDYDFDDEANDD
                     DFYEMD"
     gene            13395..13868
                     /gene="moaC"
                     /locus_tag="SB143_000757"
     CDS             13395..13868
                     /gene="moaC"
                     /locus_tag="SB143_000757"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEF9749310.1"
                     /translation="MELTHLDENNRPKMVDVSQKDISKRVATASGMISMSEEAFKAIK
                     NNTAKKGPVLQTAVIAAIMGAKKTSEIIPMCHPLMISKVETDIVEFPKDYTFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKTMKISEIVLESKEGGKSGKFVRS"
     gene            13846..14109
                     /locus_tag="SB143_000758"
     CDS             13846..14109
                     /locus_tag="SB143_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEF9749311.1"
                     /translation="MVNLCDLKQEPIVNYPTFWDYKVIFEAHVHAGALFEELLGQRDF
                     KYKHSNASSSGKYQSFLLSVYVDSKKDRLDIFEKLKAKAKFVL"
     gene            14124..15260
                     /locus_tag="SB143_000759"
     CDS             14124..15260
                     /locus_tag="SB143_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749312.1"
                     /translation="MKNTLIIFENSLSNLKKDEVKDLLEDLSFNLAYKQISQDPHSTK
                     KILNSLLVEFLTILKKLDLFDDENVAKVIKALVKASVGDAQNVLYEYISEAELLNKQI
                     ENQKNLIKNQISDNFLEFENILQECSFCDEFSSGLNDAILFDIEMLGILKETAESAFL
                     TTLEKAEDIELTSSEIAKSLVYNAICEAHFEKERILKISSIILNTAFEIANESIAYAK
                     DLCLGAIKGTRDGISLAMEKFKTTLAYAKFEEDVSLKSKELIGIEDDFIALLKREIKE
                     QKNPSKDIVENLLEHELNNLFAKFKRLAVESREQLLLVLNDIKKNPKINDFNRLTQRK
                     LHRFKQEILELEKVAGEKYKELNSKKAKKLGVRLWERAKKLIKK"
     gene            complement(15278..16036)
                     /gene="xth"
                     /locus_tag="SB143_000760"
     CDS             complement(15278..16036)
                     /gene="xth"
                     /locus_tag="SB143_000760"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEF9749313.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIIKENIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYSNSAKRAGYSGVMSLCNFDSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLSFKMKFYAKFLVYLEKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGDIKEKYSWWSYRMKARERNVGWRIDY
                     FFISTGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            16152..>16695
                     /locus_tag="SB143_000761"
     CDS             16152..>16695
                     /locus_tag="SB143_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1705 domain-containing protein"
                     /protein_id="HEF9749314.1"
                     /translation="MFKFKLSWFGFVLFNSILITLLNFNLHSFVYEKLSQNLLLTLVF
                     IVAYFGLVHMIFSLIFVKYLTKILSIFFILSSCTSLYFITFYGVLIDSDMIQNVMQTD
                     IKEVKDLLSWRLVLLAIVVLLFCVFILRIRIENNTEQGFFKKIRVRVLSALLGCSIFL
                     IAFVPLSKTFIPFFRTYNEIR"
BASE COUNT         5695 a         2521 c         2593 g         5886 t
ORIGIN      
        1 tcgcgcaagg tttcatcgtg cttttccatt tcatagatta aatccgtatt atcgcaaatg
       61 gcttcaacca ttactgcata agattttgaa tggttagctt cttcataagc ttggcgtgct
      121 aaaaccgcat tgatttcagg agcagtgatg taaggattga tattatcagc tagattgttg
      181 gtttgaaagc tatccataga aatgagctga gaccaaacaa gatcatacat tcttttttca
      241 cctgcagtta aattacagcg ataatctaat gcatctttag tcgtatctac ttcttttgga
      301 aaccaagtgt ttgcttccat taaatcccat aattttaaag cccaagtgta ttttgctttt
      361 gtaaaattta agattccatg aggatttccg ctaaaaactt tacgatctgt taatgtttca
      421 tttgagcctg gattataaat tctttttctt tgcatttttt acctttcttt catatctttg
      481 tgactatgca agtttgggtt agaatatcat gtaaatttag tttatctttt cttaaaaagc
      541 ttataaataa accaaaaatc aacccaaaac ttataataaa tataatatat cttaataaaa
      601 ttctaaaaaa agttattttc ttacccgttt ttagatcgat tagataaaga tcataagcct
      661 taagccctgg actttgagct tttgaggcta aaaataaagc ttgaataaaa ccaaataaga
      721 aagtacatag ggctgtgata taggagttgt ttaaaaaagc ctccttagag cccaataaaa
      781 aataaaataa atataagata gggacataaa ttaaaaatat atctataagc aaagctctaa
      841 atcttaacca tctagaggct atttttgcct tagttttcat ttaatttccg cgacttcctg
      901 gcttaatagc tttacttcct tctttgcaaa acggacaatc attttcatca taaatttgaa
      961 aatcaaaatt tcctaaagta aaaagaggta aattatcagg cagttttgca ctcggttttc
     1021 taggattttt taaattttca accgcgcaaa aaccgcgatt tgccaatgct gcaaaaccta
     1081 aaacttttcc tcctaagctt tctatgattt tagcactttc taaagcactt ccgcccgttg
     1141 tgatgatatc ctcgcaaatg ataaatcttt cgccttcttt tacctcaaaa ccgcgtctta
     1201 gagtcatttc tccattaact ctttcggtaa aaataaagcg tttatcacaa gctctagcaa
     1261 gttcatatcc tgctaaaatt cctcccaaag caggagaaca aatgctgtca aattctatat
     1321 taaattcggc tataatttta gcaagctcat cacaaagtct tgctgctaat tttggatttt
     1381 ctaagacttt agcactttga agataaaact cagagtgctt acccgaactg agtaaaaaat
     1441 gtccttgtaa ataagcccca caatctttat aaatttgctc taaatccatt tttaaacctt
     1501 taaaagttcg ctttctttgt tttttacact ttcatcgatt tttgcagtat aagtatctgt
     1561 tagtttttgc acttcatcat aggctttttt agcttcgtct tctgaaatgg ctttatcttt
     1621 ttcaagtttt tttacggcat cgtttgcatc tttgcgaata tttcttaccg aaacttttgc
     1681 tttttcaccc atagcttttg cttgttttac attttcttct ctttgctctc ttgtcattgg
     1741 agggaagaat aattttacac tttcgccatc attgtttgga tttaccccta tatttgctgc
     1801 tgcaatagcg ctttctatag tttttaacat aggtttttcc caaggagtaa tgcttattgt
     1861 tgaagcatca cttgctaaaa cggttgcaac ttgatttaaa ggagttaaag agccatagta
     1921 atctacttga atatgatcta agatatgtgt attgacttta cctgtgcgta gggtagtaaa
     1981 atcttttttt aaagcttcta agcttttttc actttgagtt ttttgtttgt ttaaaatttc
     2041 attaatcata ttttttcctt ataaattact tacttgtatt tgattcgtta ggtatttgtg
     2101 gagcacttgg aatagctggc acgtttatag catttggagc agtaggaatg cttgtatttg
     2161 tttcaatttt gattttttca gctaaagaat ctttacttgt actattgtat aaatatccta
     2221 aacctatagt gtttgcaata agtaaaattc ccatgatgaa agtaaatttc gctaaaaatc
     2281 ctgcgggtcc ttttgctcca aataaacttt cattgcttcc gctataagct ccaagtccta
     2341 tgcttgagct cttttgaagt aaaacagcta tacaaataat aacgacgatg acaaactgca
     2401 aaatagttaa aagagtaatc ataaattttc ctaaatttta aaaatttttt gagttagata
     2461 ttgtaactaa ataaaacttg aaaagatttg aaattttaag aattttgcgg ggactttccc
     2521 gcaaaaaatt atctactatt gaaacttctt aggatattaa gtaaagatac aaaaaggttt
     2581 acaaaatcaa gataaagcgc tacagcacct tcaattggag tttcatagtt tccgcgaata
     2641 atattttgtg tatcataaag aatataaaat gaaaataaaa tcgctgctac ggctgaaata
     2701 gctaaattta ataaactgct ttggaagaag atattaagca aagaagccgc tacaaccacg
     2761 attaaaacta taaataaagc tttacccatt agtgtgaaat cttttttggt attcatagca
     2821 aaaatactaa gcgctgcaaa agctactgtt gttagagcaa aagcttgagc gatgattact
     2881 ccacctgctg gtagggcaag aacagaaatg agtaatggcg ttagggttaa gcctgaacaa
     2941 aaagtaaaac caaaaagtaa aattaaattc aatggagctt cgcgtttttt aaattgcaag
     3001 gcaatcaaaa gtcctatttc aacagcaaaa agtatccaaa aggttacttg tgattgtata
     3061 aaaaatgccg ctaaagcata aattcctaca tatgcaccaa cagttgctgc taaaagagaa
     3121 gccgcaaaaa gttgataagt ttgtttaata aaaataccaa gttcacttga acgagtgttt
     3181 tcaaattctc ttgatcgtga atagtctcta tcataaagac tcatattcat cctccttaaa
     3241 agatttcgat tttaacttaa atcttgagcg aactctagca taaaaaattt aataaagagt
     3301 taatttgcga atgtttgctt gtaggtgaaa ttctttgctg aaaatttgtt ataattttaa
     3361 gatttttcaa ttaggttgat atatggataa tcttattagc ggtgcgatca aatttatgca
     3421 agaggatttt aaagagcatg aagaactttt tgaaagtctt aaaaataagc aaaatcctca
     3481 tactcttttc ataggttgtt ctgattctag agtgatcccc aatttaatca ccaatacagg
     3541 cccaggtgag ctttttgtga tacgaaatat tgcaaatatt gtcccacctt atcgcgtggg
     3601 tcaggattat ttagcgacta cttcagcaat agaatatgct ttaaattctt tacgcattaa
     3661 gaatatcgtt gtatgtggac atagtaattg tggtggttgt aatgcattat actattctga
     3721 tgaagaattg gataaaattc ctaatgtaaa aaaatggctc actatgcttg atcctataaa
     3781 aagggatgtt acgatctttg caagagatga tatagctatg cgttcttggc ttactgaaaa
     3841 acttaactta gtgaattctt tgcaaaatat ttttacctat cctggagtgc aagaagcttt
     3901 agatgaggga agattagaag tgcatgcttg gtattatatc atcgaaacgg gtgaaatata
     3961 tgagtatgat tttaaggcta aaatttttaa attaattcaa aataggaaaa cgcaatgaaa
     4021 aaaataatca ttttgtttct tttaggtatt tcatgtcttt ggggggatga atttcgtctt
     4081 atagatacca atgcaagtgc gcaagataag agtgtttata gtttggtgca aaaatatatc
     4141 gatttaaatc accaaattaa agaatttaaa aaaaataatg atgaaaattc aagttcctat
     4201 gatggaattt taagcgaatt tgaaaaagat aaaaagtcta ttctttctaa aatgcccgat
     4261 atgatagtaa agcaacaaat caatgaaaaa gcagtagaaa gctttttaaa aacaaggcaa
     4321 aatttgttag atttacaaaa gaagagcata aacaaacctt atgtttatgt agatacaacc
     4381 ttaaatatta tgtatttaga tgttgttaaa agtttttatt cgtctttatt tgagcttgaa
     4441 agacttttta aaaatgcagc aaatagtgaa agcataatct ctacggtcga taaggcaatg
     4501 gaaaatttgc aaaattcaac caatatagat cttagtattt ataaagctaa aatcaataat
     4561 ccatctgaat tagagaaaat ttccaataaa gaagaaatga tttttaatgc tgtggatgct
     4621 tatgtagaaa ttttaaaata tttgcgtgcg aatgcagatt tgttagaaag taattatatt
     4681 ttttctttgc ttgaacttca agtatggata gatcgtatca atgaaatggc caatattgat
     4741 tttataaata cgggtaagat agttatttcg attttagttt tagttttttt tatgtcttta
     4801 agacgctttt tttcaaatat agtttatttt atcctcgttc gtttagttta tcgcaataaa
     4861 agcgatgcag atgatattaa ggttattttt atagacaata ttaaaaaacc tgtgggtttt
     4921 ttgcttattt gttatgccat ttcactttgt cttacaatag caacttatcc tgctccttta
     4981 agtattaatt taagtaatct tttccacata gtttatgctg ttttaatcgc ttggttgatt
     5041 ttaaggatac ttgatggata tggcgtggtt ttggtttcaa aacttgcaca aaagagtggc
     5101 aaaaaagaag tggtaaattt agtcattaaa attttatatt ttgttatttt tgtgatcgca
     5161 cttctttata ttttagcaca acttggtttt aatatctcgg ctattattgc atctttaggg
     5221 ataggtggtt tggctgtggc tttggctgca aaagatatta ttgcaaactt tttcgcttct
     5281 atacttttat tatttgataa tagtttcaat caaggggatt gggttgaggt ttctggagta
     5341 gaaggaacgg tggttgaaac agggcttaga aagacaacga ttagaacttt tgataattgt
     5401 cttgtgtttt tgcctaattc tactattatg ggagcaaata taaaaaactg gagtaaaaga
     5461 cgcatggggc gtcatgttag aatgtatttg ggtgttggtt atgatgctac tcctgaaaaa
     5521 ttagaaaatt gtgtgaaaga tttaaaagag cttttatata caagtccttt agtagcacat
     5581 gaagatgatg gagcattaaa gtatggcgat catacaacaa aatatcgtca aaatttagtt
     5641 tctatcaatg atcttgaggg ttataaaaat gcttgttatg tggctttaag tgaatttgca
     5701 gatagtagta ttaatataga gctttatttt tatatcaaag aaataggtgg aaaagatttt
     5761 agagaagcta gacaaagttt aatgcttgag tttatgcgta taattgaaaa aaatggttta
     5821 acctttgctt tcccaagtcg tagtatttat atagaaaatt taccacccct tgatttgcaa
     5881 gcaaaagcta taaaatagca agattttatc ttgctatttt ttaaaccggc ataacgcgta
     5941 tatttggact taattcttct tgtaaaattg tttcaatagc ataaagtgtt gcaccacttc
     6001 cactagaaca accactacaa gcaccaagat aacgaatata aacatcaatt gctgcacctt
     6061 cagccttttg tatatcaatc acttccaaat ctccaccatc attatgaagc atagggcgaa
     6121 tttcagcatc taaaacactt tcaactgctt ttaattgtcc cactacggtc atttcatcaa
     6181 aagctacatc acttttcaca gcatttttaa gtttctctct atccatttca gcccttgttt
     6241 cagctaaaat atcaaccaga tagtattctc ttttttcatg tccgcctggt ttgatacagg
     6301 atttacaaaa agcacctgct ttggtgtatt gagtgatttc ttctacagtg tgtaaatcat
     6361 tgagtttgat cacttcttta atagtgccaa gacttactct agcacactcg caaactataa
     6421 tttgatcttc aaaatcttca ggacttatac ctttataatg cgctgctgct tgtttgatta
     6481 catcataagc cataaccgaa cagtgcattt tttgaggtgg aacagctgga gtttctggat
     6541 tatcacgcat agcaaattcc acatctaaat ttgtgatttt tactgcttca tctacagttt
     6601 ttcctataca aagatccacc atagtatcac tacttgctat agctgtacca caaccaaaac
     6661 ttttaaattt tgcatcgata atagtatctg ttttttcatc tacaagccaa aaaagtctta
     6721 ccgcatcgcc gcaactttct gcaccaaaat cagctacgat caattttgca ttgcgtgctt
     6781 tagcatcttc ttcactaaat tctcccatat gttgaggatt attcattcta tcttgaactt
     6841 tttgtgagta ttcatcccag atagatccac caattaaact attttttccc attttttatc
     6901 cttttattta taattatttg gattataagc ataagtacaa gaaattgctc ttaagcgttc
     6961 tgtggcagct ttgatttgtt ttgctgcata atcaatttct tcttcagtgt taaaacgtga
     7021 caaagaaagc cttaaagctg tatgtgctaa gtcattttca gctccgattg cttccatgat
     7081 aggattgctt tctaaagctt cacttgcaca ggctgagccc gtacttgcag ctataccatt
     7141 tttatttaaa tcccaaagca ttgcttcgcc ttcaactcct ttaatacttg ctaagattgt
     7201 attaggcaca cggtgttctc tttttccaac cactgttgta tcaggcaagg ctaaaatttg
     7261 atcttctagt ttatctctta aacggcgtat atgagaatct tcaaaatcaa gcatagtatt
     7321 tgcaatacgc aaagcctcgc ccatagccac tatgtaaggc acatttaaag ttccgcttct
     7381 acgaccaccc atgtgttctc caccgtgtaa aagtggagta agcttaagac cttttttgat
     7441 aaaaagtccg cctacacctt ttggtccatg gaatttatga gctgaaaatg aagcaaaatc
     7501 aactcctact tggtttaaat ttactttgat ttttcctact gcttgggtag catctgtatg
     7561 aaaaagcgct ccaaattcat gagcaatttc tgccattttt tgaatatcaa aaatcattcc
     7621 tgtttcatta ttagcccaca ttacgctaac aagtgcggtt ttatcgctga ttacattttg
     7681 taaatcttga ggagtagaaa ctccttcttc atttactgga agttctataa gctttacacc
     7741 taaacttttt aaaaattgag ctgctgcagc tactgctgga tgttctacgc tagagataat
     7801 cacttcattg cgttctttat ctaaaatatg atcaaaatat atacccttaa gcacccagtt
     7861 gatactttca gtagcacagg atgttataac tatatcatct aaatcatttg cgccaagtcc
     7921 cgcataaagt ttatccatag cttctcttag ggcaggatga gttgcgctgc cccattggtg
     7981 aagactgttt ggatttccat acatgtcttt taaaaatggc aacattaatt cgtatgcgct
     8041 tggatcaagc atcgttgttg cattattatc taaatatact ttcactttaa tttccttaaa
     8101 ttttaattcg gatatttttt atctttatta tgaaaatgga taataacaga aaaatataaa
     8161 ttctagttta aaaattatag caaaaatatg aatattaaag taaaaaaata caaagaatta
     8221 tggattaaaa tttgtatttt taaatattta taaaattact ttaaagtaat actgataaat
     8281 aagaatttaa tatcttattt aaattggctt gtttttgacg acgatctaag aaattttcta
     8341 tggagctaga acgcatatta ttagcattat ctagcttttc taaatcttta ttttggcttt
     8401 gatattcttc tttaagagag ttaaattcgc tatgattttc atcaatataa atttggaaga
     8461 tagagcttga atttgcaaat tctcttaaat ccatatcttt ttgataattg acatattgtt
     8521 gaaaaaaaac tgaaagctta tcttgagaag cggttttttt atctactcca ttcacataaa
     8581 gatataaatc aaagctcatt ttttgttcgt tttgttgttt gatatagtct tttatatcca
     8641 tttcccctct aaggattttt tgaaaattag tatgagcatt gagatccaaa ctcgcaggtt
     8701 tcataaaaaa attaagctcg ttatcatttt gtgttttgat atcatgataa ataaaattca
     8761 tcaaaagccc tgattttgaa acttcagcat ttttggttag gtaaggtttt aaaatttcat
     8821 tagatgaggt attgtttaaa gctctatcga agtgaaaatt agtaattttg ttatctagca
     8881 ttaaagtatt taggcttaga gttttgttta gcgcggagtt taattcttct tgattgttgt
     8941 aaattcttga aattttgcct aaaaattccc cattttcagt agaaaatccg gtggcaaatt
     9001 ttgaaatcat atcgcgactt aaattagcat tatcattttc gctaaattct aaattgacag
     9061 actttagcga gctataatag ctgtttaaaa gatagggtag gtctattttg ttataattta
     9121 aagttgcatc ttgtcttgtt aattctttgg ctatatttct aacacttttg atgttgatat
     9181 tataagattc aggtatatta gcgattttat ttaaatcttt ttcaaaaaaa cctttctcgt
     9241 ctatcctaaa gctaaattca cttgcataag aagtggtgtt aaaaatataa tttaaatttt
     9301 ctaaattgtt ttcattttct tctaaatttg aacctttttt atctttgatt aaattcaaag
     9361 cttggctatt ttgtaaagga ttggataggg ccaaattttg ataagggttt gccgaattta
     9421 tagtcatttt aaatctttca aaaatattgc tagtttttta taagcaaaag gtgtgccaag
     9481 ttttttaaat acaaaattca gtcaaaaatt agcaaaaatt tgctagcatt tagcttttct
     9541 ttttgaaaaa atttaaaaat ttatccgaaa ggaaagcgta tgccaaagat gaaaagcgta
     9601 aaaagcgcag ttaaacgctt taaagtaggt aaaaataaaa tcaaaagagg ctctgctttt
     9661 agaagccata ttttgactaa aaaacctgca aaaagaatgc gtgatcttcg cacagctaaa
     9721 tatgtgcaca gcactaatgt aaaagctgta gaaaaaatgc taggaattta agtttttgac
     9781 ataagtcatt caaactctcc ttaagttgct aaaaatttaa gggcaagctc caaaatggac
     9841 gccactttat gaaaggaaat aaaaatggca agagtaaaaa caggtgttgt aagacgccgc
     9901 agacataaaa aagttctaaa attagcacgc ggtttttata gcggacgccg caaacatttt
     9961 agaaaagcaa aagaacaatt agaaagaagt cttgtttatg cgtatcgtga tagacgccgc
    10021 aagaaaagag attttcgccg tctttggatt gtgcgtatca atgctgcttg cagattaaac
    10081 gatttaagtt attctaaatt tatcaatgga cttaaaaaag caggcattga gcttgataga
    10141 aaaattctag ctgatttagc aatgaatgat gctgctgctt ttgcaaaaat cgcagaagct
    10201 gcaaaaaaag cgctttaatt taatgagtta agatttaaat cttaactcat gattgtcaat
    10261 ataaactgca tttaaatttt aaaatacaac tcattaaaaa ctaattttat ttaggattta
    10321 ttaataaaat cataaaaatt atatgataat aaaattaaaa tatcacttat aagccataga
    10381 gttttgtaac acaataaggc cattttagaa actttcttgc atatatatta aaaatcatcg
    10441 tataagtaaa ttaaaattta gttataataa tagattaata aaaattatag cccaaggaaa
    10501 atatatggca actgatatga atgaaatttt acttcgaagt gttgaagttt tacctccttt
    10561 gcctgatact ataaataaac taagaaaata tatcaacgaa tcgggttcta atgtaaaaat
    10621 tgatgaaatt gctaatatta tttcaagtga tcctttaatg actgctaagc ttttacgctt
    10681 ggctaattct cccttttatg gtttttcaag agaaatcacc tctttggctc aagttgtctc
    10741 tcttttgggt ataggtaata tcgttaatac tatcatggca gattcaatta gagatagttt
    10801 taaaatcgat gtatcacctt atggattaag cacgacagaa tttgtaaata aatgcagcga
    10861 ggaaacttct tttatcatgg attggttggg caatgaggat aaaaagctat cgcatttact
    10921 agtgccttgt tctatgcttt taagacttgg tattgtagtt ttttctaatt ttcttattca
    10981 aaataaaaaa gatgccgagt tcttagctag attggaaaaa aataatttta gtgatttatc
    11041 tatggtagag aatgaatttt taggtgttga tcatatttca ttcttaggat ttttgcttta
    11101 tcgttggaaa tttgatgata tgctagttga aactatttgt tttgctcgct ctccgcacgc
    11161 agctagaaat gaggttaaaa aatcagctta cgctctttca gttgttgatc atctttttac
    11221 acctcataat aatttttctt cttttaatat caaggcttct atcgctttga ttaatgaggc
    11281 tcgaagtcaa gggattgatt ttaatcttga taattttatt tcaaaacttc caaaagaagc
    11341 taaagaaaac ctaataaaag aaggttaaat tgtttatttt attaaattaa tgaaaagtat
    11401 cattttacct cctaatgaat ttttagatca ttatgtttta aacgcggaat ttcatcgttt
    11461 agctggaatt tcaaaaaatg cttataaatt ttggaaaaaa gtagaaattg gtagatatca
    11521 agggactcgt attatttttt tacacaagaa ttccatttta gaaaaacatc gagaagtttt
    11581 aaaacaatgt agcgatttaa gtggttttgt gctagcaagt gctttttgtt cttttacggg
    11641 attagctcca tcgcatcttg taaaaaaaaa taattcttca atctataaac ttttagattt
    11701 aaaagaaatt catggtatta aatttgtaaa tttaaaaaaa ttttatgatt ttttagggct
    11761 aaattattat cagcatattt acatagaaaa atgccatttt tttagcccca cgccttttga
    11821 aaagcgtata aaaatcactg agagtatgtg cgttgggtat tattaagata tctaaaaata
    11881 aaagctgata ataaagccaa taaaacgatt aaaaacatat aataacccaa agaaaaacgc
    11941 cacgcattat ctaaatttgc aaatgcaaat ttatgcaata aaagtgtaag ttgaggggtt
    12001 atacctcctg caatggcata ggcgatatta taagaaaaag aaagtcctga aaatttaatc
    12061 tttgcttcaa aagcttcatt cattattaaa ggacaaaaat tcatcactcc accaaaaaga
    12121 caagctagca agtaaaaaat actgactaga gttatatcgg catttgtatt gtaaagaaag
    12181 tgaaaataaa acgcacaagc taagccaaaa aacaaggaaa aaataatact agatttaaaa
    12241 atacctattt tatcagctaa aattccactt ataatacaac ccaaagaaat aaagaaaatt
    12301 ccacccattt gtaaataagt ttggaaattg gtatcaaatt gtaaaatttc tgccatatat
    12361 tttgggataa ataaaatcat tacaataata caacctgtta aaacccaagt gattagcata
    12421 gagataagaa cacctgcttt tgctctttta aatacttctt taagtggaaa tttttctaaa
    12481 acattttctt ttctcatttg ctcaaaaaca ggagtttcac ttaaaaattt tctaagatat
    12541 attgaaataa gtccaaaaat tccacctaaa aagaaaggaa ctctccaagc ccattcgtat
    12601 aattcttctt gagtgtaaat tttgtgcatc aataaaaata ctatacttcc aagtaaaatt
    12661 ccacccacca cagaagctgt taaaaagcct atataagttc ttctttgtcc ttgcggtgaa
    12721 tgctcatata caaaaatcca agcaccgggt aattctcctc ctatggaaat accttgagct
    12781 attcttataa gcattaaaaa tactacacaa agataaccaa tactttcata agaagggata
    12841 aaggccagtg caaaagttgg tattaccata agcaaaatac ttagcataaa catttttttg
    12901 cgcccaaatt tatcgccaaa atgtgccatc actataccgc ctagcggtct tactacataa
    12961 gctgctgcaa atatgccata ggtattaaaa agttgccaaa aagggcttaa attttcaggg
    13021 aagaagtttt ttgaaatata acttgaaaag aatgcaaaga taataaaatc ataaaattcc
    13081 aaggctccac ctaaagatga aagtcctagt gtttttatat cttttttact aagaattttt
    13141 ctcattttta atccatttca taaaaatcat catcatttgc ttcatcatca aagtcataat
    13201 catcatcatc ataattatag gatttgtgat gattgtgagc atactcatcc tcttcacctt
    13261 cataatcatc aaattctaaa tcttcatcat cataagccat tatttactcc ttgataaaca
    13321 aaataaaatc taattttagc ttaaatttga ttgcttttgc tataattttt tatatttttt
    13381 aaaaaaggtt gattatggaa ttgactcatt tagatgaaaa caaccgccct aaaatggtag
    13441 atgtaagcca aaaagatata agtaaaagag tggctacagc aagcggtatg atcagtatga
    13501 gcgaagaagc ttttaaggct ataaaaaaca atactgctaa aaaaggcccc gtacttcaaa
    13561 ctgctgttat agcagctatc atgggtgcta aaaaaacaag tgaaattatc cctatgtgtc
    13621 atcctttgat gatttctaag gttgagacag atatagttga atttcctaaa gattatactt
    13681 ttaaacttat agtaacggta aaatgcgagg gtaaaacagg ggtagaaatg gaagctttaa
    13741 gcggcgttag cataggactt ttaactatct atgatatgat taaagccatc gataaaacaa
    13801 tgaaaataag tgaaattgta cttgaaagca aagaaggggg taaaagtggt aaatttgtgc
    13861 gatcttaaac aagagcctat tgttaattat cctacttttt gggattataa ggtgattttt
    13921 gaagcgcatg ttcatgcagg agctttgttt gaagagcttt tgggacaaag agattttaaa
    13981 tacaaacatt ctaatgcaag ttctagtgga aaatatcaaa gttttttact cagtgtttat
    14041 gtagatagca aaaaggatcg tttggatatt tttgaaaaat taaaagctaa agccaaattt
    14101 gtgctttaag aaagagggat taaatgaaaa atactttgat tatatttgag aattctttat
    14161 ccaatctcaa aaaagatgaa gtgaaagact tgcttgagga tttaagtttt aatcttgcgt
    14221 ataagcaaat ttcacaagat ccacacagca ctaaaaagat tttaaattca cttttggttg
    14281 agtttttaac cattttgaaa aaacttgatt tatttgatga tgaaaatgtt gcaaaagtta
    14341 tcaaagcttt ggtaaaagct agtgtaggag atgctcaaaa tgtcctttat gaatacatca
    14401 gcgaggcaga attattaaac aaacaaatcg aaaatcaaaa gaatttaatt aaaaatcaaa
    14461 tcagtgataa tttccttgaa tttgaaaata tcttacaaga atgttctttt tgcgatgaat
    14521 ttagcagcgg attaaatgat gcgattttat ttgatataga aatgcttgga attttaaaag
    14581 aaactgctga aagtgctttt ttaactactc ttgaaaaagc tgaagatata gaacttacta
    14641 gcagtgaaat tgccaaaagt cttgtttata atgctatttg cgaggcacat tttgaaaaag
    14701 agcgtatttt aaaaatttca agtattattt taaatacagc ttttgagata gcaaatgaat
    14761 ctatagctta tgctaaagat ctttgtcttg gtgcgattaa agggactaga gatggaattt
    14821 ctttagctat ggaaaaattt aaaaccacac ttgcttacgc aaaattcgaa gaagatgtga
    14881 gtttaaaaag taaagagtta ataggcatag aagatgattt tatcgcactt ttaaaaagag
    14941 aaattaaaga acaaaaaaat ccatcaaagg atatagttga aaatttatta gagcatgagc
    15001 ttaataatct ttttgctaaa ttcaaacgcc ttgctgttga gagtagggag caattgcttt
    15061 tggttttaaa tgatatcaag aaaaacccaa aaatcaatga ttttaataga ctaactcaaa
    15121 gaaaactgca tcgctttaag caagaaattc ttgagcttga gaaagtagca ggggaaaaat
    15181 acaaagaatt aaattcaaaa aaagctaaaa agttaggcgt aagactttgg gaaagggcaa
    15241 aaaaactcat taaaaaataa tatcccattt tgggatatta aatatctatt tctatgccta
    15301 caggtgcgtg atctgaacca aaaatatcat ctcttatgaa agcatttttc agcttgtctt
    15361 ttaaacctgt tgaaatgaaa aaataatcga ttctccagcc cacatttctt tctcttgcct
    15421 tcattctata actccaccac gagtattttt ctttgatatc gccattgatc tctctaaaag
    15481 tatcaataaa accaagtttt agcaaatcat caatccaagc tctttctatc ggtaaaaatc
    15541 ccgaggtatt ggcatttgcc tttggatggg taagatcgat ttctttgtgt gcggtattga
    15601 catcaccaca aatgataatt tcaaagccat cctttaaaag tttttctaaa tacaccaaaa
    15661 atttcgcata aaatttcatc ttaaagctta aacgctcttc atctttttgt ccatttggaa
    15721 aatagatatt aaaaagtgct atgtttttaa aacgatgttc taaaactctg ccttcttcat
    15781 catcaaaaaa ttcacatttt ttaacttcac tatcaaaatt gcaaaggctc ataacacccg
    15841 agtatccagc ccttttggca gaattagaat acatatgctt aaaagggtat tcataaattt
    15901 ttttaggaaa tttatcttca tgtgctttaa tttcttgaaa acctataaaa tcaatatttt
    15961 cttttattat ccaatcaagc gcatttttat cacaaatagc tcttaagcca ttgacattcc
    16021 atgaaagtag tttcatcagt taatccttaa atttttgaaa taaaaataat atcataatta
    16081 ataaaaaata ttactaatgg ttagtttttt ctttctaaac tttacttttt agttattttt
    16141 aaggggagaa tatgtttaaa tttaaacttt cttggtttgg atttgtactt tttaattcca
    16201 tactcattac acttttaaat tttaatttac attcatttgt ttatgaaaaa ttatcccaaa
    16261 atttactgct tactttagtt tttatcgtag cttattttgg tttggttcat atgatttttt
    16321 cacttatttt tgtaaaatat ttaactaaaa tattgtctat attttttatt ttatcatcct
    16381 gtaccagtct ttattttatc actttttatg gagttttaat tgattcagat atgatacaaa
    16441 atgttatgca aactgacata aaagaagtga aagatttgct aagttggcgt ttggttttat
    16501 tggctattgt cgtcttgctt ttttgtgttt ttattttaag aattcgtatt gaaaataata
    16561 cagagcaagg tttctttaaa aagatacggg ttagagtttt aagtgctttg ttgggttgtt
    16621 ctatcttttt aatcgccttt gtgcctttaa gtaaaacctt tatacctttt tttagaactt
    16681 acaatgaaat aagaa
//
LOCUS       DARAII010000028        16444 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.028, whole genome shotgun sequence.
ACCESSION   DARAII010000028 DARAII010000000
VERSION     DARAII010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16444
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.028"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..915
                     /locus_tag="SB143_000762"
     CDS             <1..915
                     /locus_tag="SB143_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEF9749315.1"
                     /translation="DRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKD
                     TTAHIQNNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFASLKASANGVVN
                     GYIHTNGRVGVIIAAACDNAEVANKSRDFLKQLCMHIAAMKPSYLSYEDLDIEFVENE
                     HKALVAELEKENEERRRLKDPNKPEHKIPKFASRKQLSDAILKEAEENIKEELKAQGK
                     PEKIWDNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTIEQVIAEKEKELGGKIK
                     IVEFIRFEVGEGLEKKTEDFAAEVAAQL"
     gene            925..1560
                     /locus_tag="SB143_000763"
     CDS             925..1560
                     /locus_tag="SB143_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749316.1"
                     /translation="MELLRAENLGHSFDYPLFENLNFSLNQKDCIAIQGSSGCGKSTL
                     LHIISSLLKPNKGEVFFKGQNLYKISENERLKIRRYDLGIIFQTHYLFKGFSALENIE
                     LASVLSNQDLDEKILKKLGIHELLKQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLVSYAKENDAALFFVTHDSKLAQFCDKTYILNTNGIC"
     gene            1547..2314
                     /gene="fliR"
                     /locus_tag="SB143_000764"
     CDS             1547..2314
                     /gene="fliR"
                     /locus_tag="SB143_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEF9749317.1"
                     /translation="MEFVNYLGDKNVATFMLLFARMSGLIVFFPFFSHNSIPMIIKTT
                     FALFLTMYLFPLAKLEILHLDSFFIIQLLSEIVFGMIAGLMLQIVFAIVMMAGEQIAF
                     TMGFTMASVLDPSSGTNMPITSQILHLIALLFFLAFDGHHLMLLFLSHSLGYINLGGF
                     YPHENLMHYLNMGMLNIFIIGFTMSFPILGISLLADTIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKDLILEVFTHMQTLFFA"
     gene            2370..3923
                     /locus_tag="SB143_000765"
     CDS             2370..3923
                     /locus_tag="SB143_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749318.1"
                     /translation="MKILLLNENPVVSRLISLSTKKMSYDFEEINAYDENLGHYDVII
                     VDSDTPAPLKILKEKCDKLIFLAPRNQSVDIDALILHKPFLPTDFLNLLNQENLKIAD
                     DIILPIEEAENPYANISLDLDGLNLDDLPDENTEDTQENELSMEENLESLALYDMEEE
                     TNQKEIASENTDKELNLDDLSLDEDQEENDASEQTTANHIEEKNEDEQALEVAFQDDI
                     LNDKTSEENEEEFEIQEQDTQEQDANQDEQDKIEDTQELEDQVDNLNGDLVQDNENSE
                     AQEAIVNNNLDAEEAQPEVLEDAEEPSKTQLQDFITDDFPIVEEQERKIDFDDIPEDA
                     EFLGQRKEEDEAVEDFLPVVEDQENLNEHDDFEEMSSLSTQDQIKEELAQLDELEYDI
                     DSDDNIKVLEDFKEEPILDDKDLPNNDEEIVVPKLQINDFDSLKESDIQEALGEEIST
                     LEDNKSEKLKIKEDQLASEAGEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNINI
                     SISFNEDKN"
     gene            3920..4537
                     /gene="gmk"
                     /locus_tag="SB143_000766"
     CDS             3920..4537
                     /gene="gmk"
                     /locus_tag="SB143_000766"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEF9749319.1"
                     /translation="MSAFILLVSGPSGAGKSTLLKKLFDEFQEELYFSISSTTRLPRE
                     GEQHGVDYYFITHDEFQQGIDKEQFLEWAKVHENFYGTSLEHIQNALNDGKIVVFDID
                     VQGFKIVKKKMAEKIISVFITTKNKDELKKRLIKRNTDTILQLEKRLQNASDEMKELN
                     EYDYFIINDKLEESYEALRAILIAHKFKTKGQNLEQIQNIWNKGE"
     gene            4539..4778
                     /locus_tag="SB143_000767"
     CDS             4539..4778
                     /locus_tag="SB143_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEF9749320.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     SNEDEAAKNAHKIEEKQNTTNHANTDANIDEVKKS"
     gene            4789..6381
                     /locus_tag="SB143_000768"
     CDS             4789..6381
                     /locus_tag="SB143_000768"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEF9749321.1"
                     /translation="MKNIIFNEVKKILECDFALENPKDKNLAHFATPLAFSLAKELRK
                     SPISIANELAAKFQEHSYFDKVEALNGYLNFRLSKTFLNELANKALQNPNEFSKGEDK
                     TESFLLEYVSANPTGPLHIGHARGAVFGDTLARIAKHLGYKFDTEYYVNDAGNQIYLL
                     GLSIFLSIKESILKEEVEYPEQYYKGDYITDLAKEAYEHFSQDFFSEENIPALADWAK
                     DKMLVLIKDNLNQANIQIDAYASERSYYGALEATLLALKEHGGVYEQEGKIWLASSLK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYDKCINIWGADHHGYISRMKAAMEFL
                     GFKADDLEIILAQMVSLLKNGEPYKMSKRAGNFILMSDVVEEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFGKAGKKIDDVIDADLQSLNQDGVNL
                     LFEALNLKAILNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(6399..6707)
                     /locus_tag="SB143_000769"
     CDS             complement(6399..6707)
                     /locus_tag="SB143_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEF9749322.1"
                     /translation="MYIAIIILSAFLDIVANLLLKKSDGFRHKSWGIAAIISAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(6708..7082)
                     /locus_tag="SB143_000770"
     CDS             complement(6708..7082)
                     /locus_tag="SB143_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEF9749323.1"
                     /translation="MILPFIFRRAFLNLIKKELFIAWFFLISAIVFEVLGTSFLKMNN
                     PILAYSFMAIFIAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFILFKESLTST
                     QMLGIALSIIGIILINIGEVKE"
     gene            7156..7863
                     /locus_tag="SB143_000771"
     CDS             7156..7863
                     /locus_tag="SB143_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEF9749324.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISSDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNIE"
     gene            7873..8355
                     /locus_tag="SB143_000772"
     CDS             7873..8355
                     /locus_tag="SB143_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEF9749325.1"
                     /translation="MLKTIDISKVNEYKFALVETEKGTMKLELFGDEAPQTVCNFANL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQINPEDKESLEVLDSIRQGDKIIDIKICDKI
                     "
     gene            8521..9126
                     /locus_tag="SB143_000773"
     CDS             8521..9126
                     /locus_tag="SB143_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEF9749326.1"
                     /translation="MQEIIHFIIETAGDWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDIVFCILSGVLGSVLGALINYYICFFWGKKFVLRWGKYFGINEAKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFVLFTALGSAIWVSILAFLGYY
                     IGENEELIKAYLTQILIVIIIFIVLASLIYIKIKKPFAKKA"
     gene            complement(9123..10046)
                     /locus_tag="SB143_000774"
     CDS             complement(9123..10046)
                     /locus_tag="SB143_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEF9749327.1"
                     /translation="MSKIGIVGLGFVGAASAYNIVVQNICSELYLYDIKQDLALAHAR
                     DLEDMSAIHSSYTRIIHATNLEQLASCDIIILAFRKENLKELSSRLVELQNNITELKD
                     IVLSLKHANFKGKYIVATNPNDTITYYTQILSSLPKNHVFGSGTNLDSSRLKKILAKD
                     LDLNPKDITAYMIGEHGDSQFAALSTASVLGQNLLTFCDKMGKKLDIENIEKAVVDEG
                     YFIYKRKGRTEFGIGTSCANLAKAVLEDRKSLHPVSVVFDDLAFSLPAIIGKNGVEKI
                     FELDFNEREKIKLENSKLQIKNAIQSVSDKI"
     gene            10112..10888
                     /locus_tag="SB143_000775"
     CDS             10112..10888
                     /locus_tag="SB143_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEF9749328.1"
                     /translation="MQKPDIQSLTNFLIDYTKTLLSAGTYTARVAKCVGRIAQVYGYE
                     ININFFFHHITLNIVDIEDNSIQRTYVIPNHHAHINFKLIFELSALSWAIYDHKYELE
                     KAKSAFNAISIQKKHSYVLNLLFVSIANSGFCRLFGGDFGAGVLVFFATFLGLLLRFA
                     LTKIKIDLRIQYILCSFVSSWFVFLGLDMGYTNTSDAALGSSILYLIPGVFFINSIID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISKFGILQ"
     gene            10885..11379
                     /locus_tag="SB143_000776"
     CDS             10885..11379
                     /locus_tag="SB143_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEF9749329.1"
                     /translation="MIEFILKDMFFAAMAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLIEYFHFETLAIATFVASFCVGCLGIALAKIIKTPAEVIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTLSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            11437..11706
                     /locus_tag="SB143_000777"
     CDS             11437..11706
                     /locus_tag="SB143_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEF9749330.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERST
                     PNTASFNQAPRQEPRYNDHSYSHQSHDHYYKKKKRESWLGELFDF"
     gene            11781..12722
                     /gene="czcD"
                     /locus_tag="SB143_000778"
     CDS             11781..12722
                     /gene="czcD"
                     /locus_tag="SB143_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEF9749331.1"
                     /translation="MYEFLLHEPLANKSKHNHEDHSHEHHHADARSVDKKILKISLLM
                     TFSMMLVQFIYSLLSNSLALLSDTLHMFSDVFALTLSFLAIIAIEKWQDHQKTFGYFR
                     LEILVAFINALTIILSAIFIIYEAIEKLINPSSIDAKTMIIVAVLGFLVNAINAFMMF
                     RGANLENVNMKSAFLHMMSDLLGSLVVIIGGIAVYFSGIVYIDTILAIILSLLLLRWA
                     ITLLKQSVNILLETSPVDIEEVKQALLLNSKVEEVIDLHITQITNKMLVASMHLRVNI
                     DDLKEFEQLSYDLSHDLLHRFEIGHITIQPLRSKNEI"
     gene            12712..12915
                     /locus_tag="SB143_000779"
     CDS             12712..12915
                     /locus_tag="SB143_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HEF9749332.1"
                     /translation="MKFKVANINCQNCANLIKNSLEDIFGEIKIDLDANPRTLSLNLD
                     SSREEEFKKELGELGFEVLEKIE"
     gene            12915..15038
                     /locus_tag="SB143_000780"
     CDS             12915..15038
                     /locus_tag="SB143_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002833017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEF9749333.1"
                     /translation="MQEFRVKIGKMTCVNCSNAIERACKKIQGVSDASVSYVNSSGVF
                     LLEDEARSQDVIEKIQSLGFEILENEQNLEEYRKKELISLRKNLLLSIVLSALIMYFE
                     MFDTSFLSQNMQMLLSFFVIFYCGRTFFSHAIKGLKNWNLDMNTLIALGCISAFAYSF
                     CIYLNLFEDEKHLYFSGAAMIISFVLLGKFLETNAKFKALNYQKRLNEIDIKKAKILN
                     EAGELNEILSAFVKNGDIIVVREGESVAVDGVVIQGKAEIDTSFLSGEFLPSSVRVDD
                     EIKAGSILLNGNLHIKASKKAMDSTLEQIKDLVFKAGNVKTPLENSVDRISRYFVITI
                     IAFALAVFVFWSFKAGVSEAFLHACAVLLISCPCALGLATPIALITAQGAAMKNFILI
                     KNPAALENLNKIKTAFFDKTGTLTQNNLELFRHNLNAKDFQMLALIESSSSHPIAKAI
                     FEASKIKAQILKGSSEIFIGKGVKYIEENEEYLLGNLKFMQESGVKNLEKADEFLQSL
                     KEEALICVYFAKNGECLGVLTLKNTLKEGAKELIEDFKKQKIQSIILSGDNEKSVQSV
                     ANLLGIADFKAGLLPEEKLQIIKEHKQNSLFVGDGINDAAALNLASVSMSFKEGSDLA
                     KNAGDFILMKDDLRLISWCFKLAKKTKNIIKLNLFWAFFYNILCIPIAAGFVPFITLS
                     PHLAALAMCFSSLCVVLNSLRLRKV"
     gene            complement(15050..>16444)
                     /locus_tag="SB143_000781"
     CDS             complement(15050..>16444)
                     /locus_tag="SB143_000781"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEF9749334.1"
                     /translation="RIFSRALVCDNGPSDTPCGTCKQCLAALEGKHIDIIEMDAASNR
                     GLEDIQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATT
                     DPLKLPATVLSRTQHFRFKQIPQNEILNHLKEILNKENVKFEEEALKFVARSGNGSLR
                     DTLTLLDQAIIFCQNDISTSKITDMLGFLDPAKIKEFYHAILTKNKDRVFDFLEELKD
                     YEASSVIDEMLFYLKESFFAKSSEFSTLIYERFFRILARAKNLICDDDGFTLCVMAFM
                     MMEASHLKEIDTQINEIQKNLTNTNSNLEKQEVKTPIVLEIQKSSTIKNAYEILLEKI
                     YDRDYELGECFKQSTQFISYENEILTISSNAQGSNRDKLNKGFKLIQELFRNHFGSNA
                     KIVVQKAIIIDESKLQSLTQELPQQNNEAQAPKKIDLHSSFNELKQGAKKFDPQEDTK
                     EALREYFGEPKIEN"
BASE COUNT         5607 a         2217 c         2991 g         5629 t
ORIGIN      
        1 gatagacttg ccgcagaagg cttggtaagt gttaaggtaa gtgatgattt tacaagcgca
       61 acagtaagtg agattaactc agaaacagat tttgtggcta aaaatgatca atttattgct
      121 ttaacaaaag atacaacagc acacattcaa aacaatagct tgcaaagtgt tgaagagctt
      181 cactctagta caatcaacgg cgtaaaattt gaagaatatt taaaaagtca aattgcaact
      241 atcggtgaaa atttagttgt aagaagattt gctagcttaa aagcaagtgc aaatggtgtg
      301 gtaaatggat atatccatac taatggtcgt gtgggtgtta tcatcgctgc agcttgtgat
      361 aatgctgagg tagcaaataa atcaagagat ttcttaaaac aactttgtat gcatatagct
      421 gctatgaagc caagctattt aagctatgaa gatttggata tagaatttgt agaaaatgaa
      481 cacaaagctt tagttgcaga gcttgaaaaa gaaaatgaag aaagacgcag acttaaagat
      541 ccaaacaaac cagagcataa aattcctaaa tttgcaagcc gcaaacaact tagcgatgcg
      601 attttaaaag aagcagaaga aaatataaaa gaagagctca aagctcaagg caaacctgag
      661 aaaatttggg acaatattat tcctggtaaa atgaatagct ttatagcgga taattctcaa
      721 cttgacagca aacttacttt aatgggtcaa ttttatgtaa tggatgataa aaaaaccatt
      781 gaacaagtaa ttgctgaaaa agaaaaagaa ttaggtggaa aaattaaaat cgttgaattt
      841 attcgttttg aagtaggaga aggtttagaa aagaaaaccg aagattttgc tgctgaagtt
      901 gctgcacagc tttaaagtat caaaatggaa ttattaagag cggaaaattt aggtcacagc
      961 tttgattatc cgctctttga aaatttaaat ttttctttaa atcaaaaaga ttgcattgct
     1021 atacaaggca gtagtggttg cggaaaatct actcttttgc atataatttc ttctttatta
     1081 aagccaaata agggcgaagt tttttttaag ggtcaaaatc tttacaagat aagtgaaaat
     1141 gaaagactga aaattcgtcg ttatgacttg ggcatcattt ttcaaaccca ttatcttttt
     1201 aaaggttttt cagctttaga aaatatagaa cttgctagtg ttttatcaaa ccaagattta
     1261 gatgaaaaaa tcttaaaaaa actaggcatt cacgagcttt taaaacaaaa aataggtaaa
     1321 ttaagcggag gtcagcaaca acgcgtgagt atagctagag tgctttgtaa aaaaccaaaa
     1381 attatttttg ccgatgaggc tacaggaaat ttagattttg ataatgctaa aaatgtcata
     1441 gagcttttgg tttcttatgc taaagaaaat gatgctgctt tgttttttgt tactcatgat
     1501 tctaagcttg ctcaattttg tgataaaact tatattttaa ataccaatgg aatttgttaa
     1561 ttatttagga gataaaaatg tagctacctt tatgttgctt tttgctagaa tgagtgggct
     1621 tatagtattt ttcccttttt tttctcataa ttctatccct atgattatca aaactacttt
     1681 tgcattattt ttaacaatgt atttatttcc tttagcaaaa cttgaaattt tgcatttaga
     1741 tagttttttt attatacagc ttttaagtga aattgttttt ggaatgatag cagggcttat
     1801 gctgcagatt gtttttgcta ttgttatgat ggcgggcgag cagatagctt ttactatggg
     1861 atttactatg gcaagcgttt tagatccaag ttctggaaca aatatgccta ttacttctca
     1921 aattttgcat ttgattgctt tattattttt tcttgctttt gatggtcatc atttaatgct
     1981 tttatttcta agtcattctt tgggttatat aaatcttggc ggtttttatc ctcatgaaaa
     2041 tttaatgcat tatctaaata tggggatgtt gaatattttc attataggtt ttacgatgag
     2101 ttttccaata cttggaattt ctcttttggc agatactatt tttgggcttt taatgaaaac
     2161 tatgccacaa ttcaatcttt tagtaattgg ttatcctatc aagatagctt taggatttgt
     2221 agttctaata gctattttgc ttgtgatgat gcaatatttt aaagatttga ttttggaggt
     2281 ttttactcat atgcaaactc tgtttttcgc ctaagcaaag gataaatgaa aatgttatag
     2341 aatagcaatt atttttaagg attaaagtga tgaaaatttt acttttgaat gaaaaccctg
     2401 ttgtatcaag acttataagc ttgagtacaa aaaaaatgtc ttatgatttt gaggaaatta
     2461 atgcctatga tgaaaattta ggtcattatg atgtgattat agtcgacagt gatacacctg
     2521 ctcctttgaa aattcttaaa gaaaaatgcg ataaattaat ttttttagcg ccgcgtaatc
     2581 aaagtgtgga tattgatgcc ttaattttgc ataaaccatt tttacctaca gactttttaa
     2641 atttactcaa tcaagaaaat cttaaaatcg cagatgacat tattttgcca atcgaagaag
     2701 ctgaaaatcc ttacgctaat atcagtttag atttagatgg tttaaattta gatgacttgc
     2761 ctgatgaaaa tactgaagat acgcaagaaa atgagctttc tatggaagaa aatttagaat
     2821 ctttagcttt atatgacatg gaagaagaaa caaaccagaa agaaattgct agtgaaaata
     2881 ccgataaaga attaaattta gatgatttaa gtcttgatga agatcaagaa gagaatgatg
     2941 cgtcagaaca aaccacagct aatcatatag aggaaaaaaa tgaagatgag caagctttgg
     3001 aagtagcatt tcaagatgat attttaaatg acaaaactag cgaagaaaat gaagaagaat
     3061 ttgaaattca agagcaagat acacaagaac aagatgcaaa ccaagatgaa caagataaaa
     3121 tagaagatac tcaagaactt gaagatcaag ttgataattt aaatggtgac ttagtgcaag
     3181 ataatgaaaa ctctgaagct caagaggcaa ttgtaaataa taatttagat gcagaagaag
     3241 ctcaaccgga agtactagaa gatgcagagg agcctagtaa aactcagttg caagatttta
     3301 ttacagatga ttttcctatc gttgaagagc aagaaagaaa aatcgatttt gatgatattc
     3361 cagaagatgc tgaattttta ggtcaaagaa aagaagagga tgaagctgta gaggatttct
     3421 tgcctgttgt agaagatcaa gaaaatttaa atgaacatga tgattttgaa gaaatgagta
     3481 gcttaagcac tcaagatcaa atcaaagaag agttagcaca acttgatgag cttgaatacg
     3541 atattgatag cgatgataat attaaggttt tagaggattt taaagaagag cctattttag
     3601 acgataaaga tttgccaaat aatgatgagg aaatcgttgt tccaaaatta caaatcaatg
     3661 attttgatag tttaaaagaa agcgatatac aagaagcttt aggcgaagaa atatctactt
     3721 tagaggataa caaaagcgag aaattaaaaa tcaaagaaga tcaactagca agtgaagcag
     3781 gtgaagaaat tgttaatgaa ttaagccaaa gtatagcagg ggctatcact tcaagcatta
     3841 aagatgatac cttaaaagca gcacttaagg gtatgaatat gaatataaat attagcatta
     3901 gttttaatga ggataaaaat tgagtgcttt tatattgttg gtttcagggc caagtggagc
     3961 tggaaaatcc actcttttaa aaaagctttt tgatgaattt caagaagagc tttatttttc
     4021 tatttcttcg acaacacgct taccaagaga aggtgagcaa catggagtgg attattattt
     4081 tatcacgcat gatgaatttc agcaaggtat agataaagag cagtttttag agtgggctaa
     4141 agtgcatgaa aatttttacg gcacttcgct tgagcatata caaaatgctt taaatgatgg
     4201 aaaaatagtt gtttttgata tagatgtaca aggttttaag atagtcaaaa agaaaatggc
     4261 tgaaaaaatc atttctgttt ttatcactac aaaaaataaa gatgaattaa aaaaaagact
     4321 tattaagcga aatactgata caatattgca actagagaag agattgcaaa atgcaagtga
     4381 tgaaatgaaa gagcttaatg agtatgatta ttttatcatt aacgataagc tagaggaaag
     4441 ttacgaagca ttaagagcaa ttttaattgc ccataagttt aagactaaag ggcaaaatct
     4501 agagcaaatt caaaatattt ggaacaaagg agaataaaat gggtggttgg tcaagtccaa
     4561 gtcattggtt aattatttta ttaattgttg tattactttt tggagccaaa aagataccag
     4621 agcttgcaaa aggcttgggt aagggtatta agacttttaa agatgaaatg agcaatgagg
     4681 atgaagcagc aaaaaatgcg cataaaatcg aagaaaagca aaatacaacc aatcatgcaa
     4741 atactgatgc aaatatagat gaagtaaaaa aatcttaagg cttagttttt gaaaaatatt
     4801 atttttaatg aagttaaaaa aattttagag tgcgattttg cacttgaaaa tccaaaggat
     4861 aaaaatctag ctcattttgc tacccctttg gctttttctt tagctaaaga attaagaaaa
     4921 tcacctattt ctatagcaaa tgaactagct gctaaatttc aagaacatag ctattttgat
     4981 aaggttgaag cactcaatgg atatttgaat tttagattat caaaaacctt tttaaatgag
     5041 cttgcaaata aagccttaca aaatccaaat gaattttcca aaggagagga taaaactgaa
     5101 agttttttgc ttgaatatgt cagtgctaat cctacaggcc ctttacatat agggcatgca
     5161 agaggtgcgg tttttggtga tactttggca cgcattgcaa aacacttagg atataaattt
     5221 gacacagaat attatgtcaa tgatgcgggt aatcaaattt atttactagg actttctatt
     5281 ttcttaagca ttaaagaaag cattttaaaa gaggaagtgg aatatcctga gcagtattat
     5341 aagggtgatt atatcacaga tcttgcaaag gaagcctatg aacacttttc tcaagatttt
     5401 ttcagcgagg aaaatatccc tgctttagca gattgggcta aagataaaat gcttgttttg
     5461 attaaagata atttaaatca agcaaatatt caaatcgatg cttacgctag cgaaagatct
     5521 tattatggtg ccttagaagc aacactattg gccttaaaag agcatggtgg tgtttacgag
     5581 caagagggta aaatttggct tgcttcgtct ttaaaaggag atgaaaaaga tcgtgttatt
     5641 atccgtgaag atggccgtgg gacttattta gcagcggata tagtttatca taaggataaa
     5701 atgagtagag gttatgataa atgtatcaat atttggggag cagatcatca tggctatata
     5761 tctagaatga aggctgctat ggaattttta ggctttaagg ctgatgatct tgaaattatc
     5821 ttagcacaaa tggtttcttt acttaaaaat ggagagcctt ataagatgag taaaagggct
     5881 ggaaatttta tcttaatgag tgatgtggta gaagagatag gaagcgatgc attgcgttat
     5941 atctttttaa gtaaaaaatg cgatactcat ttagaatttg atatcagtga tttacaaaaa
     6001 gaagatagtt ctaatcctgt gtattatatc aactatgcac acgctagaat tcatcaagtt
     6061 tttggcaaag ctggtaaaaa aattgatgat gtgattgatg cagatttaca aagcctaaat
     6121 caagatggag taaatttgct ttttgaagct ttgaatttaa aagctatttt aaacgatgct
     6181 tttgaggcta gagctttgca aaaaattcct gattatctta aaaatttagc tgcaaatttt
     6241 cataaattct acaatgaaaa taaagttgta ggctctgcaa atgaaaatga tttgcttaaa
     6301 ttattttctt tggttgctct tagtattaaa accgcatttt ctttaatggg tattgaagca
     6361 aaaaacaaaa tggaacatta aaacagcatt ttgctgtttt aataatttag caaaaatact
     6421 gctattatca cgataatgat acctaaaatt cctattttgt ttaatttttc tttatataaa
     6481 atccacccac caagacaagt tcctatgatt cctatagcac cccaagttga gtaagctatg
     6541 cttagcggga catattttaa ggaaaaagaa agtagaaaaa aggctagtat ggcgctgatg
     6601 attgcagcta taccccaaga tttatgtcta aagccatcgg acttttttaa taataaattt
     6661 gcaacgatgt ctaagaatgc tgataaaatt ataattgcta tatacattta ttctttaacc
     6721 tcgcctatat taatcaagat gattccgatg atagaaaggg cgatgcctag catttgagtt
     6781 gaagttaagc tttctttaaa aagtataaaa gaaactaaaa gtataagaat aattcctaaa
     6841 agttcccata cagcataggc aattcctact tgaatttttt taattgcttt tcccataaag
     6901 aaataagaaa aagctataaa aatagccata aagctatagg ctaaaatagg attgttcatt
     6961 tttaaaaaac tcgtacctaa aacttcaaaa acaattgcac taataagaaa gaaccaagct
     7021 ataaaaagtt ctttttttat taaattcaag aaagccctcc taaaaataaa tggtaaaatc
     7081 atatcattta aagctttaat tagccttttt gttttatact tttaacttta gaaatcttaa
     7141 agaaagtgag aatttatggg acgagcgttt gaataccgaa gagcttctaa agaggctaga
     7201 tgggataaaa tgagtaagct ttttcctaag cttgctaaag ccatacaagt agctgctaaa
     7261 gaaggtggca ctgatcctga tatgaatcca aaattaagaa gtgctatagc cacagcaaaa
     7321 gcaaataata tgccaaaaga taatatagat gcggctatta agcgtgcgag tggaaaagat
     7381 agcgcagata ttaaaaacat tcattatgaa ggaaaagctg cacatggagc tttggttata
     7441 gttgaatgta tgagcgataa ccctacgcgc accgtggcta atgttaaagc catttttagc
     7501 aaaaatggtg gagaagtttt acaaaatgga tctttaggct ttatgtttac tagaaaagcg
     7561 gtttttcatc ttgaaaaatt tgcaggagat ttagaagaat tagaacttga tttgatcgat
     7621 gcagggcttg aagaattaga acaaaatgaa gaagagttag taattagcag tgattatact
     7681 gcctttggtg agctaagttc tgctatagag actaagggtt tagttcttaa aaaagcagga
     7741 cttgagtata taccaaacaa tcctgtaagc tttagcgaag aacagcttag cgatatagaa
     7801 aaacttttag ataagttaga agatgatgat gatgttcaag ctgtttatac caatatagaa
     7861 taaggagaaa aaatgttaaa aacaattgat ataagcaagg tgaatgagta taaatttgct
     7921 ttagtagaaa ccgaaaaagg cacaatgaaa ttagaacttt ttggcgatga agctccacaa
     7981 actgtttgta attttgcaaa tttagcaaat gaaggttttt ataaggattt aaattttcat
     8041 cgcgtgattc caaattttgt gattcaaggg ggttgtccac acggcaatgg tgtaggtggg
     8101 cctggatatg aaatcatttg cgaatgtgat gatcaagaac ataaacatga gcgtggaacc
     8161 ttatctatgg cacacgcagg acgcgataca ggagggtctc aattttttat ttgtcacagc
     8221 cctcaagctc atttagatgg agttcacact gtttttggac aaattaatcc cgaagataaa
     8281 gaaagcttag aagtgctaga ttctattcgt caaggtgata aaatcatcga tattaaaatc
     8341 tgtgataaaa tctaatttac attaattttt tatcttacct actaaagctg gtcttttact
     8401 agactagcta agatagcttc tgtataaatc ttagttagaa agtatgattt taaatacttg
     8461 ctttaatttg tttaattttt taagttacaa ttttggaaat ttttcttcta taaggctaat
     8521 atgcaagaaa tcattcattt tattatcgaa actgctggtg attggggata tttaggcatt
     8581 attattttaa tgactttaga aagttgtttt ataccttttc caagtgaagt tgtgatgatt
     8641 ccagcaggat atttagcgca taagggcgag cttgatatag ttttttgtat attaagtgga
     8701 gttttaggct ctgttttagg agctttgatt aattattata tttgcttttt ttggggtaaa
     8761 aaatttgtac ttagatgggg taaatatttt ggtatcaatg aagctaaatt tgccaaattt
     8821 gaagaatttt ttaataaaca cggagaattt tccactttta cctgtaggct tttgccagga
     8881 attcgtcagt atatttccat gcctgcgggt ttggttaaaa tgaaacttgt taattttgtg
     8941 ctttttactg cactaggtag tgctatttgg gtaagtatac tcgcattttt gggttattat
     9001 ataggagaaa atgaagaatt gattaaagct tatctgactc aaattcttat tgttataatt
     9061 atttttatag ttttggcaag tttaatttat ataaaaataa aaaagccttt tgctaaaaag
     9121 gcttaaattt tatcgctcac actttgtata gcatttttaa tttgcagttt tgaattttct
     9181 agcttgattt tttctctttc gttaaaatct agttcaaaga ttttttctac cccatttttt
     9241 cctatgatag caggcaatga aaatgctaaa tcatcaaaaa ccacacttac aggatgcaag
     9301 ctttttctat cttctaaaac agctttagct aaatttgcac aagaagttcc tatgccaaat
     9361 tcggttcttc ctttgcgttt atagataaaa tacccctcat caacaactgc tttttcgata
     9421 ttttctatat ctaatttttt acccatctta tcgcaaaatg ttagtaaatt ttgccctaaa
     9481 acactagccg tagaaagggc ggcaaattgc gaatccccat gctctcctat catataagcg
     9541 gtgatatctt taggattaag atctaaatct ttggctagaa tttttttaag tctagagcta
     9601 tcaagattgg ttccacttcc aaaaacatgg tttttaggta aagagcttag aatttgagta
     9661 taataagtaa tcgtatcatt tggatttgta gcaacgatat atttaccctt aaaatttgca
     9721 tgttttaaac tcaaaacaat atccttaagc tcggtgatat tgttttgaag ctcaactaaa
     9781 cgactggata attcttttaa attttctttt ctgaaagcta ggatgataat atcacaactt
     9841 gctagttgtt ctaaatttgt agcatgaatt attctcgtat aagaagaatg aatcgcagac
     9901 atatcttcta aatctctcgc gtgtgctaag gctaagtctt gcttgatatc atataaataa
     9961 agttcggagc aaatattttg cacaacaata ttataagcac ttgctgcacc cacaaaaccc
    10021 aaacccacaa taccgatttt tgacatttta tttcctttgc tttgaaattt tgttataatt
    10081 atataaattt gattttaaag aaattataaa tatgcaaaag cctgatattc aaagtttaac
    10141 aaattttcta atcgactata ccaaaacact tttaagcgca ggaacctaca cagctagagt
    10201 tgctaaatgc gttggcagga tagctcaagt ttatggatat gagatcaata ttaatttctt
    10261 ttttcaccat atcactttaa atattgtaga tattgaagat aattccatac aaagaaccta
    10321 tgtgatacct aatcatcatg ctcatattaa ttttaaactt atttttgaat taagtgcttt
    10381 aagttgggcc atatacgatc acaaatacga acttgaaaaa gcaaaatcag cctttaatgc
    10441 tataagtatt caaaaaaaac attcttatgt attaaatctt ttatttgttt ctatagctaa
    10501 ttcaggtttt tgtagacttt ttggcgggga ttttggcgca ggggttttgg tattttttgc
    10561 gactttttta ggactgcttt taagatttgc ccttactaag ataaaaatag atttaagaat
    10621 tcaatacatt ctttgctctt ttgtttcttc ttggtttgta tttttgggtt tagatatggg
    10681 ctatacaaat acttctgatg cagcacttgg ttctagtatc ttatatctta taccgggggt
    10741 attttttatc aattctataa tcgatatatt aaaagatcat attttaatgg gtttaagtcg
    10801 tattatcagc gtagctattt taatttgctg tattgctctt ggaatttata tgactcttag
    10861 tatttcaaaa tttgggattt tacaatgatt gaatttatct taaaagatat gttttttgct
    10921 gctatggctg ggtttggttt cgcgtatgct tgtaatcctc ctttaaaaac tcttatttta
    10981 tctgcactct tagcggccat tgctcacgga cttcgcttta ccttgataga atattttcat
    11041 tttgaaactt tggcaattgc aacttttgta gcttcttttt gcgtgggttg tttgggtatt
    11101 gctttggcta agattattaa aacccctgct gaggttattg cttttcctgc gcttattcct
    11161 atgatacctg gtatttatgc ttataaggct attttatatc ttatctcttt tatacgcagt
    11221 gatgatttaa aggctaagtc tgaatttttg gtgcagtttt ttgattattt ttttaccaca
    11281 ctttcggtaa ctttggcttt ggctataggg gtaagcgtta ccttgcttat attctttgag
    11341 caaagtttta tgatgacaag gcatgctaaa aagcattgat ttttgtttaa tctttcttat
    11401 tataattttg aaaattttat aaaaaaggaa aaatacatgt tgtgtcctgt ttgtaatgtt
    11461 gatttggtaa tgagcgatag aagcggagtt gagattgatt attgtccaaa gtgtcgtggt
    11521 gtttggcttg atcgtggaga acttgataaa atcatagaac gcagcactcc taatacggca
    11581 agttttaacc aagctccaag acaagagcct agatataatg atcattctta tagtcaccaa
    11641 agccacgatc attattacaa aaagaaaaaa agagaaagct ggctaggcga actttttgat
    11701 ttttaatttt tatgaaaaat ataaatcttt atatcctttt tagtttaata tcttaaaata
    11761 tcaagcaaaa aggatataaa atgtatgaat ttttactaca cgaaccctta gcgaataaat
    11821 ctaaacataa ccacgaagat cactctcatg aacatcatca tgctgatgca aggagtgtgg
    11881 ataaaaaaat attgaaaatt tctcttttga tgactttttc aatgatgctg gttcaattta
    11941 tatactcttt actttctaat tctcttgcgc ttttaagtga tactttgcat atgttttcag
    12001 atgtttttgc tctaacactt agttttttag ctattatcgc tatagaaaaa tggcaggatc
    12061 atcaaaagac ttttggttat tttcgcttag aaattttggt cgcatttatc aatgctttaa
    12121 ctatcatttt atcagcgatt tttatcatct atgaagctat agaaaagctt ataaatccaa
    12181 gcagtatcga tgctaaaact atgattatag tagctgtttt aggtttttta gtcaatgcta
    12241 taaatgcttt tatgatgttt agaggcgcaa atttagaaaa tgtcaatatg aaatcagcct
    12301 ttttgcatat gatgagtgat ttgctgggct ctttggtagt gattataggt ggtattgctg
    12361 tatattttag cggtatagtt tatatagata cgattttagc tattatttta tcgcttttac
    12421 ttttaagatg ggctataaca cttcttaagc aaagtgtaaa tattttactt gaaacctctc
    12481 ctgtggatat agaagaggta aaacaagctt tgcttttaaa ttctaaagta gaagaggtga
    12541 ttgatttgca tatcacacaa attaccaata aaatgttagt agcttctatg catttacgag
    12601 ttaatatcga tgatttaaaa gaatttgaac aattatctta tgatttgtcg catgatttgt
    12661 tacaccgatt tgaaataggg catattacca ttcaaccttt aaggagtaaa aatgaaattt
    12721 aaagtcgcaa atatcaattg tcaaaattgt gcaaatttga ttaaaaattc tttagaagat
    12781 atttttggag agatcaaaat agatcttgat gcgaatccac gcacgctaag tttgaattta
    12841 gatagctcaa gagaagaaga atttaaaaaa gaacttggcg aacttggttt tgaagtttta
    12901 gaaaagattg aataatgcaa gaatttcgtg taaaaatagg caaaatgact tgcgtaaatt
    12961 gctctaatgc catagagcgt gcttgtaaga aaatacaagg agtgagtgat gcaagtgttt
    13021 cttatgtgaa ttctagtggg gtatttttac tcgaagatga ggcaaggagt caagatgtga
    13081 ttgaaaaaat tcaaagtctt ggctttgaga ttttagaaaa tgagcaaaat ttggaagaat
    13141 accgtaaaaa agaactcatc tccttgcgta aaaatttgct tttaagcata gttttaagtg
    13201 ctttgattat gtattttgaa atgtttgaca caagtttttt aagtcaaaat atgcaaatgc
    13261 ttctaagctt ttttgtgatt ttttattgcg gtaggacttt tttttctcat gcgattaagg
    13321 gtttaaaaaa ttggaattta gatatgaata ccttaatcgc tttaggctgt atcagtgcct
    13381 ttgcttactc tttttgtata tatttaaatc tttttgaaga tgaaaagcac ctttatttta
    13441 gtggtgcggc catgattata agttttgtgc ttttaggtaa atttttagag acaaatgcta
    13501 aatttaaggc tttgaattat caaaaaagac tcaatgaaat tgatataaaa aaggctaaaa
    13561 ttttaaatga agcaggggag cttaatgaaa ttttaagtgc ttttgttaaa aatggagata
    13621 ttatagtagt aagagagggt gaaagcgtag cagttgatgg ggtagtgatc caaggtaagg
    13681 ccgagattga tacgagtttt ttaagcggag aatttttgcc tagcagtgta agagttgatg
    13741 atgagataaa ggcaggctct atacttttaa atggaaattt acatataaaa gcaagtaaaa
    13801 aggctatgga tagcacttta gaacagatca aagatcttgt ctttaaagca ggaaatgtca
    13861 aaactccttt ggaaaattca gtcgatagaa tttctagata ttttgtcatc acaataatcg
    13921 cttttgcctt ggcagttttt gtattttgga gctttaaagc aggcgtaagt gaagcttttt
    13981 tacacgcttg tgcagtcctt ttaatctctt gcccttgcgc cttagggctt gcaactccta
    14041 tcgctttaat caccgctcaa ggtgcggcga tgaaaaattt tatcctaatc aaaaaccctg
    14101 ctgctttaga aaatttaaat aaaatcaaga cagctttttt tgataaaaca ggcaccttaa
    14161 cgcaaaataa tttagaactt tttaggcaca atttaaatgc taaagatttt caaatgctag
    14221 ccttaatcga aagttcaagt tctcatccta tcgctaaggc tatctttgaa gcttctaaga
    14281 taaaagctca aattctaaaa ggaagtagtg aaatttttat aggcaagggt gtaaaataca
    14341 tagaagaaaa tgaagaatac ttgctaggaa atttaaaatt tatgcaagag agtggagtaa
    14401 aaaatttaga aaaggcagat gaatttttac agagtttaaa agaagaagct ttaatttgtg
    14461 tgtattttgc taaaaatggt gagtgcttag gggtgcttac tctaaaaaat accttaaaag
    14521 aaggggctaa agagcttata gaggatttta aaaagcaaaa aattcaaagc attattttaa
    14581 gtggagataa tgaaaaaagc gtacaaagtg tcgcaaattt attgggtatt gctgatttta
    14641 aggcaggatt gttgcctgaa gaaaaattgc aaatcattaa agagcataag caaaattcac
    14701 tttttgtagg agatgggatt aatgatgcag ctgctttaaa tttagcaagt gtgagtatga
    14761 gttttaaaga aggaagtgat ttagctaaaa atgctggaga ttttatactt atgaaagatg
    14821 atttaaggct tatttcttgg tgttttaagc ttgctaaaaa gacaaaaaat attattaagc
    14881 tcaatctttt ttgggcgttt ttttataata ttctttgtat tcccatagcc gcaggctttg
    14941 tgccttttat cactttaagc cctcatttag cagcgcttgc gatgtgtttt agttcgcttt
    15001 gtgtagtgct taattctcta agacttagaa aagtctaagc tttagagact tagttttcta
    15061 ttttgggttc gccaaaatat tctcttaaag cttcttttgt atcctcttga ggatcaaatt
    15121 tctttgctcc ttgttttagc tcattaaaag aagagtgaag atctattttt ttaggagctt
    15181 gtgcttcatt attttgttga ggcagttctt gggttaggga ttgtaatttg ctctcatcta
    15241 taatgattgc tttttgcacg acaattttag cattagagcc aaaatgattt ctaaaaagtt
    15301 cttgaatgag tttaaagccc ttattaagct tatcgcggtt acttccttgc gcatttgaac
    15361 taatagttaa aatttcattt tcataactta taaattgagt gctttgttta aaacattctc
    15421 caagttcata atccctatcg tagatttttt caagtaaaat ttcgtatgca tttttaatcg
    15481 ttgaagattt ttgaatctct aatactatag gggttttcac ctcttgtttt tctagattag
    15541 aatttgtatt tgtaaggttt ttttgaattt cattaatttg tgtatcgatt tcttttaaat
    15601 gacttgcttc catcatcata aaagccatca cacaaagcgt aaagccatca tcatcacaga
    15661 tgagattttt tgctcttgct aggatacgga aaaacctttc ataaatgaga gttgaaaatt
    15721 cactgctttt tgcaaaaaaa ctttctttta gataaaaaag catttcatcg atcacgcttg
    15781 aggcttcata gtctttaagc tcttctaaaa aatcaaaaac tctatccttg tttttggtta
    15841 aaatggcatg gtaaaattcc ttgattttag caggatctaa aaagcctaac atgtcagtaa
    15901 tcttgctcgt acttatatcg ttttggcaaa agataatagc ttgatcaagc aaggtaagag
    15961 tatcccttaa agagccattt ccacttcttg cgacaaattt caaggcttct tcttcaaatt
    16021 tgacattttc tttgtttaaa atttctttta aatgatttaa aatttcattt tgcggaattt
    16081 gcttgaaacg aaaatgttgc gtccttgaaa gcacggtagc gggcaatttt aaaggatcgg
    16141 tggttgctag gataaatttc acatagcttg gaggttcttc cagtgttttt aaaagcgcat
    16201 tagccgcttg aggtgttagc atatgtactt catcgatgat aaagatttta aatcttgcca
    16261 tagaaggggt atatttagtt tgctcaataa gagcttgtat gtcttctagc ccacgattgc
    16321 tagcagcgtc catttctatg atgtctatat gtttgccttc gagtgcggca aggcattgtt
    16381 tgcaagttcc acaaggagta tcgcttgggc cattatcaca aactagggct ctagaaaaaa
    16441 ttct
//
LOCUS       DARAII010000029        16334 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.029, whole genome shotgun sequence.
ACCESSION   DARAII010000029 DARAII010000000
VERSION     DARAII010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16334)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16334)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16334
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.029"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(54..1118)
                     /gene="mqnE"
                     /locus_tag="SB143_000782"
     CDS             complement(54..1118)
                     /gene="mqnE"
                     /locus_tag="SB143_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEF9749335.1"
                     /translation="MKNLLEKLENEERLNENEANALWDLDLFTLAKFAHKKRTKFHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMSHEEIMKIVDDTITRGTKEVH
                     IVSAHNKDTSWQWYLEIFKMIKEKYPQMHIKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEIRKKICHGKVSSENWLKIHKLWHDKGRQSNATMLFGHIEER
                     RHRIDHMLRLRALQDESGGFNAFIPLVWQRDNSYIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTNLKTFIEMI
                     KTANLTPVERDSLYNELKTY"
     gene            1261..3609
                     /locus_tag="SB143_000783"
     CDS             1261..3609
                     /locus_tag="SB143_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEF9749336.1"
                     /translation="MLNKELELFKENLNTYAQNYRKFFLKQGSFSLYHSKNMDNFLKK
                     TYDIVLKECFENFLPTSDNIPFCVLASKGYAKNNLCANESVSLIFVYKDIKAYHLKPM
                     IKAFIEILNDVHLQIDYVVLELNGLYNASNELKTTIIGARFICGSKILFKSVKEKFDS
                     ILHANKNEFAQILLANFKDFNLPFIKQEFNIKKDFGGLDHLRALESLLTLFKNSPKNY
                     ALNFMDEKNVSELRLAADFLLSLKSAINLQSNKDQDEFLFSNIHEIAELMYRKGKKNL
                     DAEKILVQRALQSMHTIGFYTHFLAYKIQNELQNIAQKQYRFKNLAEALTFLLGLKDQ
                     DIAFDLDLVFALKNLSYEKKDLEKALALFEKIFYKRHSFCILKLLLDSGILKELCKPF
                     GMVRFLSDEEGDYSFDEQAFLLLKEFEKYEDELESLKNLNTDEKMILKLVILLSAINN
                     ENEISLASIYRAYCIKFNLKNDIFELGLRIFKNHNALKELAEKEDVYNPIIICALLSK
                     VENLKTLELLHTLTWLKAKALNRNPFFYKVIDRILENAKQGFDDENLLDETARRVKKE
                     LTLKRTKLFLEQNAILQDKITHIKSNLFIIKNTFEDIVEIARFAKENDFKFWFSNSTN
                     LSLQIVAFKDFKIEIVLTALANLNLVFMNLFELFDDKIYLRFEYDNIITDEQKNKLCE
                     LLNSNLSGFSSRKIKKPIIKKDELKLDLNYSKIYAKLSLNTKDQQGLMAYMMNIFNEL
                     GLVLSAAKIQTIRQRTRNTFIFQKNENLEKNEEKLLISLISE"
     gene            3613..5409
                     /gene="glmS"
                     /locus_tag="SB143_000784"
     CDS             3613..5409
                     /gene="glmS"
                     /locus_tag="SB143_000784"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEF9749337.1"
                     /translation="MCGIVGYIGKNEKKHTILSGLKELEYRGYDSAGLAVMKNGELDF
                     FKAVGKLENLANKCANFTSEEFGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKNKLEDQGVSFLSQTDTEVIVQLFEFYAEKMEVFEAWKKTIEELRGAFATLL
                     VSKKDPTRVFFAKNAAPLIVGKSQNNEFYFASADTPLIGLCDEVIYLEDLSLGYANEK
                     ELVIYENNQLKQNSFTKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRINGDEV
                     VFDELENEDLSTVDEITLCACGTSYHAAMASAYLFERLARVKAKVEIASEFRYREAII
                     KPNSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFIAQKKKIDMSAQIKALLHTPNCVAVSAKLHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKTLLYEKTKSNVEELIARDSTVLCVSPLDFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            5544..6935
                     /gene="fumC"
                     /locus_tag="SB143_000785"
     CDS             5544..6935
                     /gene="fumC"
                     /locus_tag="SB143_000785"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEF9749338.1"
                     /translation="MEYRIEHDTMGEIKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKSAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFEGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSEKVSEELSKLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELNIPENEPGSSIMPGKVNPTQCEAITM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NREKIEYNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFA
                     KFVDPAKMIGPKA"
     gene            complement(6982..8025)
                     /locus_tag="SB143_000786"
     CDS             complement(6982..8025)
                     /locus_tag="SB143_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEF9749339.1"
                     /translation="MQTGKIFLICFILVVLSLLLYLFKGFLLVIIIASLMAVATSNAN
                     AKFLSLTNGRKFLASMLTTACMVLLFFTPFVYAMIELAKALKNFDINLVTQTLNYVKN
                     YQFTLPESLSFLEPKIKEFLASIDLNSISKQILNYASSFTKSGAKFLIDMVLICIFYF
                     FANLYGTELVIYIKSVIPIDKQELDDILSEVGNVMAVVLYSMIIIAILQGALFSIIAM
                     FYGYDAILMGVIFAVSSLIPALGGALVYIPISLYEFASSGLGSALVIFIYSVVVISFI
                     ADTLVKPLIIKWINEKLVKTPAKINELLIFLAMIAGISTFGFWGIILGPAILTFFIST
                     IRLYMILKDKNLI"
     gene            complement(8035..9045)
                     /gene="ruvB"
                     /locus_tag="SB143_000787"
     CDS             complement(8035..9045)
                     /gene="ruvB"
                     /locus_tag="SB143_000787"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEF9749340.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQENIKKNLNVFISA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDVLFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDEELAIILQKAALKLNKSCENEAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEETITKERAKEALNSLGVNELGFDAMDLRYLELLTEAKRKP
                     IGLSSIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASTKSFSVLKLNYEQTLFD
                     EN"
     gene            9136..9546
                     /locus_tag="SB143_000788"
     CDS             9136..9546
                     /locus_tag="SB143_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEF9749341.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            9547..9905
                     /gene="ssrA"
                     /locus_tag="SB143_000789"
     tmRNA           9547..9905
                     /gene="ssrA"
                     /locus_tag="SB143_000789"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            10112..12391
                     /locus_tag="SB143_000790"
     CDS             10112..12391
                     /locus_tag="SB143_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HEF9749342.1"
                     /translation="MKKNASSKILLSLGVATLLYSSAFAQEINLTQSSDVGNYFEENG
                     KDINLKNPDKYKGQDLNIKMGVWDLPNDDYDSADYRLNIDIGKNNTLSFTHNNGQNPV
                     YVTNLNATAKEVKTTDIVLQASAPSVINGNLTMTSSGAETITEDEKKGSGIILYNGNG
                     AVEGKSANGSLTINGNFTADKTLFAAYGNFVKVNGTANLTNSNFGLMKRSYTDLEANN
                     VVIVQAKDFNENILKANNNAGALLLKFAGDYISTDVQGKDPLEAVTIIDISDEDKYGD
                     GEKGLVDYKLSVQNCGGNKCLVINGGATAAAKDKLVQLQVDIDTIDKLLKNEFDSSQG
                     EEWEQAKEALQEQKTEFEKLQQEAMQNGGKIDDEKYIDLVNKNLNLNLSANDKASILA
                     LRSITEQLGSIGADLASREGVKLALQIKKDTDNTGKSVSNLNSASSAVNTTMNISNDV
                     SIGSRVAMLNNPFGTYASKMNGLKFAALDSDMRPSYVNEYTNSVWANAFGGANIIDGD
                     SGAMYGATVGVDKQANDDVLWGAYFTYANAKIKDNNLEQKSDNFQLGMYSTINVAPQW
                     ELNLKAYAQVSPTKQDNVQTDGAYNSDYTSKFLGLSANAGRVFDFSDNTLFIKPFAGV
                     NYYFSYTPSHTENGAIAKDIDSMKNNSVSVEVGAEFRKYMNENSYIFVTPKIEQFVIN
                     SGDDYTANLAVNNAFFTSVEANNKKKTYGQIIVGGNVDFTNQLSMNLGFGAKQILAGK
                     VDNKNETYLSGQVGLKYKF"
     gene            complement(12533..14617)
                     /locus_tag="SB143_000791"
     CDS             complement(12533..14617)
                     /locus_tag="SB143_000791"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEF9749343.1"
                     /translation="MQTNPNMFLNRELSWLRFNSRVLDQCSRPLPLLERLKFVAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNISSSDEMSPLQQLKAIRKYLHKEKDLLEHYFNEIIS
                     DLEKENLFIKNYENLDNNLKQKCDEYFFSTIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKTHPELIKFGMIRIPRVLPRFYEVSANVYVPIESIVEKHTEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKGADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAIDKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGIQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKKGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKVEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKILE
                     MIALEASKGSEGVIIAKMNSLVDSDIIKALYEASIKGTQIDLIVRGICCLKPNEEFSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNLLAYELQNDGEYAKVASNEKVIDSQQILEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            14800..15291
                     /gene="nrfH"
                     /locus_tag="SB143_000792"
     CDS             14800..15291
                     /gene="nrfH"
                     /locus_tag="SB143_000792"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEF9749344.1"
                     /translation="MKKSLNLFGIFLVLLFVFFAVGFYTFYNAKGTSYLSNASESCNN
                     CHIMNEVYNEYMAGPHAQKVKGEARATCVDCHLPHGFLAKWIAKAESGLNHAYAFTFK
                     LDELPTNLSATEKSRNMIQDNCVRCHADFAQTAINATTNPHADKSLKCASCHQDVGHK
                     HGI"
     gene            15307..>16334
                     /locus_tag="SB143_000793"
     CDS             15307..>16334
                     /locus_tag="SB143_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEF9749345.1"
                     /translation="MKKNFLRLAIVVLVLLIVGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDNPNFERWGKVFPEQLKMYLTVEEEEPKATEFGGNLSYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLKAFKGQPAACMNCHSGWTPW
                     LINNIAKGDFVAFNSTNYWTMIKNVPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVARGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIADDSSKKWWDGTQKNYDEYEFWRDGNQPKEIEANGIMLTFPWNEWKKDQPFRI
                     EMLDDYYD"
BASE COUNT         5618 a         2395 c         2841 g         5480 t
ORIGIN      
        1 gttcgaatat tggtaccatt ttctttgagt ttaaaaaaat ccatttttaa tccttagtag
       61 gtttttagtt cattatataa actatcgcgc tctacaggag ttaaatttgc tgtttttatc
      121 atttctataa aggtttttag attggtaccc ttagcagatt ttgctcctcc tgcactttgt
      181 atactttctt tttctatagt gccatctaag tcatttgcgc caaattcttg cgcaaccatg
      241 gctaaattta aagtcatagt cgcccaataa gctttaatgt ttttgatatt atcaagtact
      301 aagcgagaaa tagctatggt ttttaaaatt tcttcactat ccattatctt atctgtttgt
      361 atatagctat tatctctttg ccaaaccaaa ggaataaaag cattaaaacc cccactttca
      421 tcttgcaagg cacgaagtct taacatatgg tctatcctat ggcgtctttc ttcgatatgt
      481 ccaaaaagca tagtagcatt gctttgtctg cctttatcat gccaaagttt gtgaattttg
      541 agccaatttt cactgcttac ttttccatgg cagatttttt tgcgtatttc ttcatcaaaa
      601 atttctgctc cacccccagg catagaatcc acgccgtatt caagcatttt ttctatcact
      661 tcttcatagc tcattttaaa acggcgatgc aaaaagtcaa tttctgccgc tgtcatagct
      721 tttatatgca tttgagggta tttttcctta atcattttaa aaatttctaa ataccactgc
      781 caacttgtgt ctttattgtg tgctgaaaca atatgcactt ctttagtgcc acgagttata
      841 gtatcatcaa ctattttcat aatttcttca tggctcataa gataaggatt tggatttttt
      901 cggtgtgctg aaaaagcaca aaatttacat gtatctgcac aaatatttgt aggatttata
      961 tggcgattta tattaaaata cacctttttt ccatgaaact tagtgcgttt tttgtgagca
     1021 aatttagcta aggtaaaaag atctaaatcc catagagcat ttgcttcatt ttcatttaat
     1081 ctttcttcat tttctagttt ttcaagtaga tttttcattg attttcactt ctataaattt
     1141 ttagaatttt tgaaaaaaca ttataaattt tgcttactga aaaagagttt atagcaaagc
     1201 caaaataaaa gatatttttg ttaaaatctt ataaatgaaa ttttaaaaga gagtaaagat
     1261 ttgttaaata aagaattaga actttttaag gaaaatctca atacctatgc gcaaaactat
     1321 agaaaatttt ttttaaaaca aggatcattt agtctgtatc attctaaaaa tatggataat
     1381 tttttaaaaa aaacttatga tatagtatta aaggaatgtt ttgaaaattt tttgcctaca
     1441 agcgataata tacccttttg tgttttggca agcaaaggat atgcaaaaaa taatctttgt
     1501 gcaaatgaaa gcgtttcttt gatttttgtt tataaggata ttaaagctta tcatttaaaa
     1561 cctatgatta aagcttttat agagatatta aatgatgtgc atttgcaaat tgattatgtg
     1621 gttttagaac taaatggact ttataatgct agcaatgagc ttaaaacaac cataataggt
     1681 gctcgcttta tatgtggatc taaaatttta tttaaatcag tcaaggaaaa atttgacagc
     1741 atactccatg caaataaaaa tgaatttgct caaattttac ttgctaattt taaagatttt
     1801 aaccttcctt ttatcaagca agaattcaac ataaaaaaag attttggggg cttagatcac
     1861 ttacgagctt tagaaagctt gttaactctt tttaaaaatt cccctaaaaa ttatgcttta
     1921 aattttatgg atgaaaaaaa tgtaagcgag ttgcgcttag cggcggattt tttattgtcc
     1981 ttaaaatctg ctataaattt gcaaagcaat aaagatcaag acgaattttt atttagcaat
     2041 attcacgaga ttgcagaatt gatgtataga aagggcaaga aaaatttaga tgctgaaaaa
     2101 atcttagtgc aaagagcctt gcaaagtatg catactatag gtttttatac ccatttttta
     2161 gcttataaaa ttcaaaatga attacaaaat attgcacaaa aacaataccg atttaaaaat
     2221 ttagcagaag cattaacttt tttgttgggt ttgaaagatc aagatattgc ttttgattta
     2281 gatttggttt ttgctcttaa aaatttaagt tatgaaaaaa aggatttaga gaaagcttta
     2341 gctctttttg aaaaaatatt ttataaaaga catagttttt gtattttaaa acttttactt
     2401 gatagtggaa ttttaaaaga attatgcaag ccttttggta tggtgcgttt tttaagcgat
     2461 gaggaggggg attatagttt tgatgagcaa gcatttttgc ttttaaaaga atttgaaaaa
     2521 tacgaagatg aacttgagag tttgaaaaat ttaaatacag atgagaaaat gattttaaaa
     2581 ttagtcatac ttttaagcgc aattaacaat gaaaatgaaa tttctttagc gagtatatat
     2641 agggcttatt gtattaaatt taatctaaaa aatgatattt ttgaacttgg gcttaggatt
     2701 tttaaaaatc acaatgcttt aaaagagctt gccgaaaaag aagacgttta taatcctatc
     2761 attatatgtg ctttgctttc taaggttgaa aatttaaaaa ccttagagct tttacatact
     2821 cttacttggc ttaaagcaaa agctttaaat cgtaatccat ttttttataa ggttatagat
     2881 agaattttag aaaatgctaa acaaggtttt gatgatgaaa atttacttga tgaaaccgca
     2941 aggcgtgtaa aaaaagaatt aacactcaaa agaacaaagc ttttcttgga gcaaaatgct
     3001 attttacaag ataagatcac tcatataaaa tccaatcttt ttatcatcaa aaatactttt
     3061 gaagatattg ttgaaattgc acgatttgca aaggaaaatg attttaaatt ttggtttagc
     3121 aatagtacaa atttaagtct tcaaatcgtt gcttttaagg attttaaaat agaaattgtt
     3181 ttgaccgctt tagcaaattt aaatttagtt tttatgaatt tatttgagtt atttgatgat
     3241 aaaatttatt taagatttga gtatgataat atcattacag atgagcaaaa aaacaaactt
     3301 tgcgagcttt taaattcaaa tttaagtggt ttttcttcaa gaaagatcaa aaagccaatc
     3361 attaaaaaag atgagttaaa attggattta aattattcta aaatctatgc aaaacttagt
     3421 ttaaatacta aagatcaaca aggtttgatg gcatatatga tgaatatttt taacgagtta
     3481 ggtttggttt tatctgcagc aaaaattcaa accatacgcc aaagaacgcg taataccttt
     3541 atttttcaaa aaaatgaaaa tttggagaaa aatgaagaaa aattgttaat ttctttaata
     3601 agtgagtaaa ttatgtgtgg aattgtaggt tatataggaa aaaatgaaaa aaaacatacc
     3661 attttaagtg ggcttaaaga gcttgaatat cgcggttatg atagtgcggg tttagcagtg
     3721 atgaaaaatg gagagcttga ttttttcaaa gctgtaggta agcttgaaaa tttggccaat
     3781 aaatgtgcaa attttacaag tgaggaattt ggttttgcta taggtcatac acgctgggca
     3841 acccatggaa aacctactga aatcaatgca catcctcatt tgggtcagta ttcttgtgtg
     3901 attcataatg gtattataga aaattacaaa gagattaaaa acaagcttga agaccaagga
     3961 gtgagttttc taagccaaac agatacagag gttatagttc aactttttga attttatgca
     4021 gaaaaaatgg aagttttcga ggcttggaaa aaaacaatag aagagcttag aggtgctttt
     4081 gccacacttt tagtgagtaa aaaagatcct actcgtgtat tttttgctaa aaatgccgct
     4141 cctttaatcg taggaaaatc tcaaaataat gaattttatt ttgcaagtgc tgatacgcct
     4201 ttgatagggc tttgcgatga ggtaatttat cttgaggatt taagcttagg ctatgctaat
     4261 gaaaaggaac ttgttattta tgaaaataat caattaaaac aaaattcctt taccaagctt
     4321 tcaggcgata aagcttatgc aaaaaaagat ggttttcgct tttttatgga aaaagaaatt
     4381 tatgagcaaa gtcgcgtaat gagcgaggtt ttgatggggc gcattaatgg tgatgaggtg
     4441 gtttttgatg agcttgaaaa tgaggattta agtacagttg atgaaatcac actttgtgct
     4501 tgtggaacta gctatcatgc tgctatggca agcgcgtatt tgtttgagcg tttggctagg
     4561 gttaaggcta aggtagaaat tgctagtgaa tttcgctaca gagaagccat tattaagcct
     4621 aattctttat ttatcgtaat ttctcaaagc ggagaaaccg cagatacttt agaagcctta
     4681 aaaattgcaa aagagcaagg agctaaaaca tttgctattt gtaatgtgga taattccaat
     4741 atagtccgtt tggcacactt aagtcttcta acgcgcgcag gcattgaaaa aggtgtagct
     4801 tcaaccaagg cttttgcaac tcaagtttta acactttgga tgttggcaat ttttattgct
     4861 caaaagaaaa aaattgatat gagtgcccaa atcaaagctc ttttacatac tcctaattgc
     4921 gttgcggtaa gtgctaaatt acatgaaaaa attcatcgtt tatctaagcg ttacttagac
     4981 ggccatggat ttttctttat aggtagagat gtgttctatc ctttggcttt agagggagct
     5041 ttaaaattaa aagaactctc ttatttgcat gctgaaggtt atcctgcagg agaaatgaag
     5101 cacggaccta tagctttggc tgattctaag ctttatacta tagctttaat gcctaaaacc
     5161 ctactttatg aaaaaaccaa atcaaatgtt gaggaattga tagctaggga ttctactgtt
     5221 ctttgcgttt ctcctttgga ttttgattta agtgatgatt ttataaaaac caacgagcaa
     5281 gatcattata tgtgtgaatt ttttgaaatg atggtgatca ctcaacttct agcgatggaa
     5341 atttctataa gacttggcaa tgatgtagat atgccaagaa atttagcaaa aagtgtaacc
     5401 gttgaataaa ccccgtgcag ttataaaact gcacataaac tctcataaat tccaaaaaaa
     5461 taaataaatt ttaaattata agctaatttt atgcttattt ttgtttaaat aattgcataa
     5521 caattttcta gaaaggaaac ctaatggaat atagaattga acatgatacc atgggcgaaa
     5581 ttaaagttcc aaatgacaaa tattggggtg ctcaaacaga gagaagtttt gaaaatttca
     5641 aaattggttg cgaaaagatg ccaaaggtgc taatctatgc ttttgcaaat cttaaaaagt
     5701 ccttagcttt ggtaaataat aaacttggca agctagatga tgctaaaaaa agcgctatag
     5761 ttcaagcttg cgatgagatt atcgcaggta aatttgatga taatttccca cttgcaattt
     5821 ggcaaacagg atcaggcaca caaagcaata tgaatatgaa tgaagtgatt gcaaatcgtg
     5881 caactgaaat catgggcgga gattttcgta aagaaaaact tgtacatcca aatgatcatg
     5941 taaatatgtc tcaaagttct aatgatactt tcccaactgc tatgagtata gttgcagtag
     6001 aacaagtgga gaaaaagctt attcctgcac ttgatgagct tattgctact tttgaaaaaa
     6061 aggtaaaaga atttgaagga attatcaaaa taggacgcac gcatttacaa gatgctacac
     6121 cgcttacttt agcgcaagaa ttcagcggtt atctttctat gcttttacat tcaaaagagc
     6181 aaattatcgc ttctttacca accttaagag aattggcaat aggcggaaca gcggtgggaa
     6241 caggacttaa tgctcatcca gaactcagtg aaaaagtgag cgaagaactt agtaagctta
     6301 taggtacaaa atttgtttca agtccaaata aattccatgc tttaacaagc catgatgcta
     6361 ttaattttac tcatggagct atgaaaggct tggctgcaaa tttaatgaaa atagcaaatg
     6421 atatcagatg gttagcttcg ggtcctagat gcggacttgg tgagcttaat atccctgaga
     6481 atgaaccagg aagttctatc atgccaggta aggttaatcc tacacaatgt gaagctatta
     6541 ctatggttgc ggttcaagtg atgggaaatg atgcggctat aggttttgct gcaagtcaag
     6601 gaaattttga acttaatgta tttaaacctg tgattatcta taatttctta caaagtcttg
     6661 atttacttgc tgattctatg cattcattta atattcattg tgctgtaggt atagagccaa
     6721 atcgtgaaaa aatagaatac aatctacaca attctttaat gctagtgact gcattaaacc
     6781 cacacattgg atatgaaaat gctgctaagg tagctaaaaa tgcacacaaa aaaggtattt
     6841 ctttaaaaga aagtgctatg gagttaggtt tggttagcga agaagacttt gctaaattcg
     6901 ttgatcctgc taaaatgata ggaccaaaag cttaaatcta gtttgatgtt tctctcttac
     6961 gcgagagaaa cattttttat tttaaattaa attcttatct tttaaaatca tataaagtct
     7021 tattgttgaa ataaaaaaag ttaaaattgc aggtcctaaa ataatacccc aaaaaccaaa
     7081 agttgaaatt ccagctatca tggctaagaa aatcaaaagt tcattgattt tagcgggtgt
     7141 ttttacgagt ttttcattaa tccatttaat gattaaaggc ttaactaggg tatcagcgat
     7201 aaaagagata acaacaacag aataaataaa aataacaagt gcagaaccaa gaccgcttga
     7261 agcaaattca taaagactta tagggatata caccaaagct ccacccaaag ctggtatgag
     7321 agagcttaca gcaaaaatta cacccattaa gatggcatca tatccataaa acatagcaat
     7381 gatgctaaaa agtgctcctt gaagtatggc gataatgatc atagaataaa gcaccacggc
     7441 cataacatta cccacttcgc ttaaaatatc atcaagttct tgtttatcga taggaatgac
     7501 agattttata tagattacta attctgttcc atatagatta gcaaaaaaat aaaatataca
     7561 gattaacacc atatctataa gaaatttagc tcctgatttt gtaaaacttg aagcataatt
     7621 taaaatttgt ttagaaatgc tatttaagtc tatagaagct agaaattctt tgattttagg
     7681 ttctaaaaag ctaaggcttt cgggtagggt aaattgataa tttttaacat aattgagcgt
     7741 ttgtgtgaca agattgatat caaaattctt taaagcctta gctagctcga tcatcgcata
     7801 gacaaaggga gtgaagaaaa gtaaaaccat acatgcagtt gttagcatag aggctaaaaa
     7861 tttacgccca tttgttaggc ttaaaaattt agcatttgca tttgaggtag caactgccat
     7921 taaacttgca atgataataa caagtaaaaa acccttaaaa agataaagta aaagggataa
     7981 aaccactaaa ataaaacaga taagaaaaat ttttccagtt tgcatttttt tccttcaatt
     8041 ttcatcaaat aaagtttgtt cgtaattaag cttaagtaca ctaaaacttt ttgtacttgc
     8101 tatacgacct ttggcagtgc gttctatgta gccatttgca agcaaataag gttcgattac
     8161 atcttcaata gtattttcat cttcactcaa agctgccgct atactagaaa gtcctatagg
     8221 ctttctttta gcctctgtta aaagctctag atatcttaaa tccatcgcat caaaaccaag
     8281 ctcattgaca cctaaagaat ttaatgcttc tttagccctt tctttggtga tcgtttcttc
     8341 gtcatttaca tctgcaaaat ctctcactct ttttaaaagt ctaagtgcga ttctaggggt
     8401 agagcgactt cttttggcaa tctcaagtgc agcttcattt tcacagcttt tattgagctt
     8461 tagtgcagct ttttgaagta tgatagcaag ctcttcatct ttataaaatt caagtctaaa
     8521 ttgcattcca aaacgatctc ttaaaggatt gctaagcatt cctgcacggg ttgtagcgcc
     8581 aataagtgta aatttaggca aatcgatttt tatagtttgt gctgcagggc cactaccgat
     8641 gatgatatct agcctataat cttccattgc agggtaaagt acttcttcaa tagcagggct
     8701 taagcgatga atttcatcga taaaaagcac atctccttcg cttaaattgg ttaaaattgc
     8761 agccaaatcc ccgctttttt ctatcatagg agccgcagtt gttttgatat ttgcacccat
     8821 ctcataagaa ataatattag ccaatgtagt tttgccaagt cctgcaggcc cactaaaaag
     8881 tatatggtct aagcattcat ttcttttttt tgcagcgcta ataaaaacat ttaaattttt
     8941 tttaatgttt tcttgtccta tgtagccatc gaaatttgaa ggacgcagag aagtttcata
     9001 agtttcgtca aaagaatatt tttctatttc tactattctg tccatatttt cattcttata
     9061 ctttggaaaa ttaaaataag attttagcta aaatttgcta caatttgcat taaactttag
     9121 caatgcggtt taaaaatggg aattttaaca aaattagaat tagattacga aatcgacgat
     9181 atagaaaaat ttttacaatt ttttagaacc atgtgtgata ggtttgaacc tttaatcatc
     9241 aagcttggaa gcgatagcgt gcgttataaa gaagccataa aagagcttga aactttagca
     9301 cacaataccg cttgggcagc aagacgctta aatcttgaag aagtgactga tttttgtgta
     9361 ttttgtgaag agatgatggc gcaagcaaat cgctttaatg ggcctgctag tgatgaattt
     9421 acggattgga tgcttttaat gagcgatcag tttgaaaaat attgtcgttc atatgaaaat
     9481 gatgattctg ttttagccgt ttttaatcct ttaattgtta atgttccaaa tattatttct
     9541 aaataaggga gcgacttggc ttcgacagga gtaagtctgc ttagatggca tgtcgctttg
     9601 gacaaagcgt aaaaagtcca aattaaaatt aaacgcaaat aacgttaaat ttgctcctgc
     9661 ttacgctaaa gctgcgtaag ttcagttgag cccgaaactc aagtgatgct atctagcttg
     9721 aattttggtc atctttgata gtgtagattg aaaattgaca acttttaatc gaagttaaag
     9781 tcttagtcta gcttgaaatt ttggaaggtg agtttagcta gatgaagttt tcacctttgc
     9841 taaacatgta gaagtctttg tgggattatt tttggacagg ggttcgattc ccctcgcttc
     9901 caccatcacg ctaattttaa gtaaatcata agtttatttc aaatttttag aattttttat
     9961 atgaagttaa gatcgattta ttacccttaa aactttgata tattaagttt tataattttt
    10021 cattaaaaat ttatagtttt atttttaagc ttatttttaa gggggggggt ataattattc
    10081 tttcagttta aatttattga aggagaaact tatgaagaaa aatgcttcga gcaagatatt
    10141 gctaagctta ggtgtagcaa ctttgcttta ttcgagtgct tttgcacaag aaatcaatct
    10201 tacacaatct tcagatgtgg gaaattattt tgaagaaaat ggtaaggata tcaatcttaa
    10261 aaatcctgat aagtacaaag ggcaagattt gaatatcaaa atgggtgttt gggatttacc
    10321 aaacgatgat tatgatagcg ctgattatcg attgaacatt gatatcggta aaaacaatac
    10381 tttaagcttt acacacaata atggccaaaa tcctgtttat gtaacaaatc taaacgctac
    10441 tgctaaagag gttaaaacaa cagatatagt tttacaagct tctgcacctt cggtgattaa
    10501 tggaaattta actatgacta gctcaggagc tgaaaccatt accgaggatg aaaaaaaagg
    10561 ttcaggtata attctttata atggaaatgg agcagttgaa ggaaaaagtg ctaatggtag
    10621 cttaactata aatggaaatt ttactgccga taaaaccctt tttgctgctt atggaaattt
    10681 tgttaaggta aatggaactg caaatcttac aaattcaaat tttggactta tgaagcgctc
    10741 ttatacagac ttagaagcaa ataatgtagt aatagttcaa gctaaagatt tcaatgaaaa
    10801 cattttaaaa gcaaataata acgcaggtgc attactttta aaattcgcag gtgattatat
    10861 ctcaaccgat gttcaaggca aagatccttt ggaagcagta actataatag atattagcga
    10921 tgaagataaa tacggcgatg gagaaaaagg cttagtagat tataaactta gtgttcaaaa
    10981 ctgcggtggc aataaatgct tagtgattaa tggaggtgct actgcagcgg ctaaagataa
    11041 gctagttcaa cttcaagtag atatagatac tatcgataaa ttgcttaaaa atgaatttga
    11101 ttctagccaa ggtgaagaat gggagcaagc caaagaagcc ctacaagaac aaaaaactga
    11161 atttgaaaaa cttcaacaag aagctatgca aaacggcggt aaaatcgatg atgaaaaata
    11221 cattgattta gtaaataaaa acttaaattt aaatcttagt gctaatgata aagcttctat
    11281 cctagctctt cgttctatta cagaacaatt aggaagtata ggagcagatt tagcaagtag
    11341 agaaggtgta aaactagccc tacaaatcaa aaaagacaca gacaatacag gtaaatctgt
    11401 atctaatctc aattcagctt ctagtgcagt aaataccact atgaatattt ctaatgatgt
    11461 ttctataggt tctcgtgtag caatgctaaa caatcctttt ggaacttatg cttctaaaat
    11521 gaatggtctt aaatttgctg ctttagatag tgatatgaga ccaagctatg taaatgaata
    11581 taccaatagt gtttgggcta atgcttttgg tggtgctaat attatcgatg gagatagtgg
    11641 tgcaatgtat ggtgctaccg tgggagtaga taaacaagct aatgatgatg ttttatgggg
    11701 tgcttatttt acttatgcaa atgctaaaat caaagacaat aatttagaac aaaaaagtga
    11761 taacttccaa ttaggtatgt attctactat caatgtagct ccacaatggg aacttaatct
    11821 taaagcttat gctcaagttt ctccaactaa acaagacaat gttcaaacag atggtgcata
    11881 taactcagat tatacaagca aattcttagg acttagcgct aatgcaggtc gtgtgtttga
    11941 ctttagtgat aatactttat ttattaaacc ttttgcggga gtaaattatt attttagtta
    12001 tactccatct catacagaaa atggtgctat tgctaaagat attgattcta tgaaaaacaa
    12061 ttctgtaagt gttgaagtgg gtgctgaatt tagaaaatat atgaatgaaa actcttatat
    12121 ttttgtaact ccaaaaatag aacaatttgt tatcaatagt ggtgatgatt acacagctaa
    12181 cctagctgta aataatgctt tctttactag tgtagaagct aacaacaaga aaaaaacata
    12241 cggacaaatt atcgtagggg gtaatgtaga ttttacaaat caactcagta tgaatcttgg
    12301 ctttggtgct aaacaaatac tagcaggtaa agtagataat aaaaatgaaa cttacttgag
    12361 tggtcaagta ggacttaagt ataaatttta atcttaaaaa tcatttctaa atctttttat
    12421 agtttagaaa tgattgttta tttctatggg aaatctccta gggctttatt ttaaagtcct
    12481 tttttataat aaacaagtaa ataagtcttt agagtaaaaa ccttaaaaac ttttagtttt
    12541 ctttgaaaag tttagaagct aagtgcgttg cacgactttg atctgtatct tttttaagtg
    12601 ttttataaat tttactgaca tattcttcta aaatttgttg tgagtcaatc actttttcat
    12661 tgctagcaac ttttgcatat tctccatcat tttgaagttc ataagcaagt aaattatcgc
    12721 tgagttgcaa gcgcaagaat tgtgctaatt ttgccttact tctttcatca tatataggag
    12781 tcataagttc taaacgacgc tctaaatttc ttggcatcca gtccgcactt gatataaaat
    12841 aatttggctc actgtgttta aaataaaaca ccctagcatg ttctaaatat tttcctataa
    12901 tacttctaac gcgtatgttt ttgctgaatt cttcattagg tttcaagcag caaattccac
    12961 gcacaataag atcgatttga gttcctttta tacttgcttc ataaagagct tttatgatat
    13021 cgctatctac aagagaattc atctttgcaa tgataactcc ttcgcttcct ttgcttgcct
    13081 ctaaagctat catttctaga attttttctt tgatttgatt tggactcata gagagagttt
    13141 gaaggcgacg atttttgcta aaacctgaaa gtatatgaaa aaagcttgtt gtatctcttg
    13201 caaattcaac tttgcttgta aaataactca catcagtgta gattttagca ctgcttgcat
    13261 tgtagtttcc cgtgcttaaa tgcatataaa atttaagctt atcgcctttt ttgcgtataa
    13321 cttgagaaac tttggcatga actttaaagc cagtgattcc ataaatcaca tgagctccag
    13381 cattttctaa agcttttgcc cagtgaagat tgttttcttc atcaaagcga gctttaagct
    13441 ctaccataac tgtaacttgt atcccatcgc ttgctgcatc gattaaggct tggactatgt
    13501 tagagttttt ttctactcta taaagagtca ttcttataga aataacctca ggatctttgc
    13561 ttgcttcttt gatgaactta taaacaggat caaagctttc aaaaggttga atgatgagta
    13621 tatcttcttt atctatcgca tcaaaaatgg ataaattttc atcaaaaggc ggtaaggttt
    13681 taggtgtata aaggggactt aaaagatgag taaaggtttt attgccagca atttgccaaa
    13741 ggctaggaag atttaacaag atagaatact cataaacatc cttgtggaaa attttcatat
    13801 gagtattaag aaattctacg atttgttcat ctgcaccctt ttgaatttgc aatcttacaa
    13861 aagcaccttt tctacgaagt tttaagcctt gctctaatat catcataaaa tcatcagctt
    13921 cttcctcttc tatcaccata tctgcatttc tagttaccct aaaagcagct gaagcaagga
    13981 gtttgtaacc tggaaaaatt tcttctgtat gtttttctac tatactttca attggaacat
    14041 aaacattggc actcacttca taaaaacgag gtaaaactct tggaattcga atcattccaa
    14101 atttgataag ctcaggatgg gttttatcac aaattttaac cgccaaagaa aatgaaagat
    14161 tatttaggtg cggaaaaggg tgagtcgcat ccacagcgat tggaacaata acaggaaaaa
    14221 tagtagagaa aaaatattcg tcacattttt gtttgaggtt gttgtctaaa ttttcataat
    14281 ttttgataaa aagattttct ttttcaagat cgcttataat ttcattaaaa taatgctcta
    14341 aaagatcttt ttctttgtga agatatttgc gtatagcttt taattgctgc aaaggagaca
    14401 tctcatcact actgcttata ttaactccag ctgaaaaaag ttgttttaat ccggcaacgc
    14461 gtatcatata aaattcatcc aaattggtac aatatatagc tacaaattta aggcgttcta
    14521 ataaaggcaa cggacgcgaa cattgatcta atacccgtga gttaaagcgt agccaagaaa
    14581 gttctctatt taaaaacata ttcggatttg tttgcattaa aactcctttt tttgcgttat
    14641 tttaacattt atttttgaaa ataatgagtt ttttagagaa ataaaattca aaatttttat
    14701 tccggttaat taagagtaaa tatatcttta aatttatctt aaaaagctat atgttagaat
    14761 aacaatttca tttattctga aagtttaagg aggaaaattt tgaaaaaatc tttgaatctt
    14821 tttggtattt ttcttgtttt gctttttgtg ttctttgcgg tagggtttta taccttttat
    14881 aatgcaaaag gtacatctta cttaagtaat gcaagtgaat cttgtaacaa ttgccatatt
    14941 atgaacgagg tttataatga atatatggca gggccacatg cacaaaaggt aaaaggagaa
    15001 gctagggcaa cctgtgttga ttgtcattta ccccatggtt tcttggctaa gtggatagct
    15061 aaagctgaaa gcggtttaaa tcatgcttat gcttttactt ttaaacttga tgagcttcct
    15121 acaaatttga gtgcaactga aaaaagcagg aatatgatac aagataattg tgttcgttgt
    15181 catgctgatt ttgctcaaac agccatcaat gctacaacaa atccacatgc ggacaaatct
    15241 ttaaaatgtg cttcttgtca tcaagatgtg ggtcacaaac atggaattta attaaggaga
    15301 aattgaatga aaaaaaattt tttacgctta gctatcgttg ttttagtttt gcttatagtg
    15361 ggagttttat ggctcaataa tgatataaat caaaaaaaag aagacgaggc aaacaaaaat
    15421 gccattgctg caaatgcgga tttttcttta cttagcgatg ataatccaaa ttttgaaaga
    15481 tggggaaagg tttttccaga gcaacttaaa atgtatttaa cagttgaaga agaagagcct
    15541 aaggctacag aatttggtgg taacttatct tattcaaaac ttattcgttt tcctcaacta
    15601 acaatacttt gggctggata tccttttagt cttgatttta atgaagaaag aggacatttt
    15661 tgggttcaag tagatcaaat gaaaaccgca agaaataata aagattttct taatgctcac
    15721 ggacttaaag catttaaggg tcagccagca gcgtgtatga actgccatag tggatggact
    15781 ccatggctta tcaataatat tgcaaaggga gattttgtcg catttaactc tacaaattat
    15841 tggactatga ttaaaaatgt tcccgctgtt gatggtatag tagaaaattc tccagagcat
    15901 gcaggaccgc atggtggcaa gagaatgggt gtgacttgtg cagattgtca taatccaaac
    15961 gatatgagct taagacttac tcgtcctgct gcaattaacg ctttagttgc tagaggttat
    16021 gaaaaagatc cagtacaagg cgtaaaagcc acaagagaag agatgagaac tttggtttgt
    16081 tcacaatgcc atgttgagta ttattttaaa ccaacaggag aaaaagtaaa agtaatgggc
    16141 gaaaccattg ctgatgatag ttctaaaaaa tggtgggatg gcactcaaaa aaattatgat
    16201 gaatatgaat tttggagaga tggcaatcaa ccaaaagaaa tcgaagctaa tggtatcatg
    16261 ttaacattcc catggaatga gtggaaaaaa gatcagcctt ttagaatcga aatgttagat
    16321 gattattatg ataa
//
LOCUS       DARAII010000030        15509 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.030, whole genome shotgun sequence.
ACCESSION   DARAII010000030 DARAII010000000
VERSION     DARAII010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15509)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15509)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15509
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.030"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..668)
                     /locus_tag="SB143_000794"
     CDS             complement(<1..668)
                     /locus_tag="SB143_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEF9749346.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLSQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSATEDFIEELAFKSAKTKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLSEDEIHEEMQAIAKTGLQEILMLTGEGREFASVEYIAKACKIAR
                     EYFKVVGVEIYPMNEDEYKILHENGCDYVTIFQETYNPLKYSKIHLGGEKRIFPYRFN
                     GQERA"
     gene            complement(671..1447)
                     /locus_tag="SB143_000795"
     CDS             complement(671..1447)
                     /locus_tag="SB143_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEF9749347.1"
                     /translation="MQENLKNDSLKIGKYEFKSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VIGDSKYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGTPAQACEAMQMGVSAVMANTAIAEAKDI
                     ALMAKAFSLAIQAGRAGYLAGLASVSEAKASSPLTGFLRD"
     gene            complement(1451..2254)
                     /gene="thiF"
                     /locus_tag="SB143_000796"
     CDS             complement(1451..2254)
                     /gene="thiF"
                     /locus_tag="SB143_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEF9749348.1"
                     /translation="MMRIKFNGKELDTKLSTSLDFFKSVSKNENDVWIINGFATKENI
                     KIHENDELFCIERNALPPKDALDAMMRARHTPKLHDKLKISSVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVVEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYIKTEICTL
                     KIDEENLPDLFKGIDIVCEAFDGALAKAMIAQNFHRFYKDITLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKVGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(2251..2442)
                     /gene="thiS"
                     /locus_tag="SB143_000797"
     CDS             complement(2251..2442)
                     /gene="thiS"
                     /locus_tag="SB143_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEF9749349.1"
                     /translation="MIINGEKFELKELKFMDFIKEKGFKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(2432..5518)
                     /locus_tag="SB143_000798"
     CDS             complement(2432..5518)
                     /locus_tag="SB143_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEF9749350.1"
                     /translation="MDIFKKYTSEIQAIFEGKNYNEHSFRTCFENLLNELKPKEVKII
                     HEPKSEKGQGSIRPDFKTYKLIDKEKELSYNHLVGFIECKNLDVDLNLHLKGKQLSKY
                     LQISPNIIFTNYKRFILFSFEKVVFDIDLLDDKLDLKEENISIFRNLLKAYFDDNSTT
                     IKSKQELVKVLSTQSFYLSNALKISFDESDANSSFKRFFRKTKDTFKNIEKIDLKDEE
                     FCDILAQAIVYGIFVSYIENDDYDLEKIPIENFISFLPSTFRTLSEFVYFAIPSFSLP
                     QDIKYTLENIKKTLSLIDKIALCKILNQDLESVSIYLYEDFLKAYDDLRATQKRKEGG
                     VFYTPKSIVDMIVSSLDELLKTKLNKNKGFNDQGVKVLDFATGTGSFLASVFEKIISK
                     ESEVFKNEAIKNKFLKDIYGFELSFVPYIVARLKLGQILRKNGFVNFSDADFQIFLNN
                     TLDLEKIANFDMFMPLENLDTEWKKARDVKHSQDLLVILGNPPYNAKSKNKGEDILEL
                     LKIYKQGLNDKNIQPLNDDYIKFMRFAQWKLLEQNKKDLFEEKKGLLGFITNNSFING
                     KTHRKMRESLYKSFDEIYILNLHGSDKDAKNDENVFDIKVGVCISLFVKYKDEPSNGA
                     KVFYYSTGDNNIFSRKEKFALLDDVRQKGLDAIKWEELSLDEPYFWFIKREFKNKEYE
                     NFWALASDKAEDKKSIFLNYSSGIQTEKDNIAIQLNKQSMENVLKDFKNLTKEENVKK
                     YNLDNSIILNTLTQYENNTGFISKIHYRPFDIQWTFYSEKQGFLGRPRYKTMQHFLDK
                     ENLGLCFIESSIHDYFSHSIVCSNITDGNFFGFRSFTAPLYLYVNNEKIPNFTSEFLA
                     YKENHKILKDKSPEEILYFIYANLYNPRYREKYLEYLKTGFARINFEVEQKTFDDFAT
                     LGKKLVELHLFKRDLKDEIDFIFLKEDKKANFKIEKYQEKDRFIDNKIILNEDLAISP
                     ISAEIWQFTIGGYQVIKQWLKYRNDYECSKEELEHLLKMCKVIKETINLQKELNDY"
     gene            complement(5527..6627)
                     /gene="dapE"
                     /locus_tag="SB143_000799"
     CDS             complement(5527..6627)
                     /gene="dapE"
                     /locus_tag="SB143_000799"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEF9749351.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAAKNADFKGARLSLILTSDEEGEAIYGTKAILEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHAAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLRLMFNVRNSPDTNLEDVRAYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSVEEFEKLCLVFKDLVENFN"
     gene            complement(6631..7230)
                     /locus_tag="SB143_000800"
     CDS             complement(6631..7230)
                     /locus_tag="SB143_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HEF9749352.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPINILILTYALKAFKNSIAVGLGA
                     FSVDLLYLLLLQFGLLNFLDNVIFMRSLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSNHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            complement(7223..7924)
                     /locus_tag="SB143_000801"
     CDS             complement(7223..7924)
                     /locus_tag="SB143_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEF9749353.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKFTDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLHQTSLFISIGTSGAVLPVGRYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(7967..12004)
                     /locus_tag="SB143_000802"
     CDS             complement(7967..12004)
                     /locus_tag="SB143_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEF9749354.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDCKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDKKGGKADIL
                     VKDNEKNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKNSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINMETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDNESF
                     YQNYLNTYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESEDKQSLEDKAFLAYAQAIEKDKLLYFSLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLIYKSFLNTLDVIPQELQIYATKA
                     RLVDMMDFEKVEFNKAISLNPSNSTQSEMSNPFINSKFELVRLKDFVLDIQTAKRPSG
                     GVGKYENGALSLGGEHIDNKSGYIKLDNPKYVPIEFYESFALQDKGIVKQFDILICKD
                     GALTGKIAMVRNEFIRKSAMINEHIFLLRCDNIAKQKYLFYILHSYSGQQALKSKITG
                     SAQGGINKTNLESILIPNADFEIQKQIVAECEKVEEQYNTIRMSVEEYQNLIKTILQK
                     CGIIDDGGGYELNSILENLQKLESKLDFNLLFSFIDDFTNARQEDLKKFKEFVKNIKA
                     ILGTFSTPPKQGWNKEKLNEIVSIQSGGTPDRKIKEYWNGNINWVKSEVCQNCYVYDY
                     QVKEKITELGLQKSSAKLLKKETTLIALVGATIGKIGFLTFESATNQNITGLYPKNLK
                     ILNTKYLYYACMGLYGQFRKLGDFAMANSNFIKNLTISLPPLEIQEKIVQNIELVEQQ
                     IDFLNLKLEFLEKEKEKILQKYLFS"
     gene            complement(12013..14223)
                     /locus_tag="SB143_000803"
     CDS             complement(12013..14223)
                     /locus_tag="SB143_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEF9749355.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSKKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQILPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DMKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTPKISPKTSISVTKPSNLSVSLDLHGLRSDEAIARLDKFISD
                     ALIAGFDEVLIYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(14213..14563)
                     /locus_tag="SB143_000804"
     CDS             complement(14213..14563)
                     /locus_tag="SB143_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749356.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(14556..>15509)
                     /locus_tag="SB143_000805"
     CDS             complement(14556..>15509)
                     /locus_tag="SB143_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEF9749357.1"
                     /translation="TSSILASLLDDASVIIGAILKEFGSNMIYKESENLIFEADESDS
                     SFLNSNPFLAIVTNAEAEHLDHYGNEVCRLHKAYDDFLDVAKIRVINAEDEFLKNYKN
                     ESIKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNF
                     LDIEMIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGRY
                     KKITAIFEPHRYTRLATNLKEFAKAFEGVDELVILPVYAAGEEPIELDLKAVFPKALF
                     VEDIKREGKFLVTSKGQVFDEGLIIGFGAGDISNKLRQKNE"
BASE COUNT         4997 a         2833 c         1878 g         5801 t
ORIGIN      
        1 gctctttctt gcccattaaa acgataagga aaaatacgct tttcaccccc taaatgaatt
       61 ttagaatact ttaaaggatt gtaagtttct tgaaaaatgg ttacataatc acagccattt
      121 tcatgcaaaa ttttatactc atcctcattc ataggataaa tttcaacacc tacaacctta
      181 aaatactccc tagctatctt gcaagccttt gcgatgtatt ctacgcttgc aaactccctt
      241 ccttcacctg ttagcattag aatttcttgt aaacctgttt tagcaatagc ttgcatttct
      301 tcatgaattt catcttcgct aagcttggct cttgcgattt tatttccttt ttgaaaaccg
      361 caataaacac atttagaatt acaataattt gacaaataaa gtggagtaaa aagcgagata
      421 gaattcccaa aatatttttg cttggtttta gccgacttaa aagctaattc ttctataaaa
      481 tcttcagtcg cacttgaaag caaggctttt aaatgctcta tgcttaaatg tgtttgattt
      541 aaagcatttt taacatcttt agcgctaaat tgactctcat catagctttg aacttgactt
      601 aaaaccttat ttaaaatttc gctttttatt tcctgcatgt gaggtaaata ctgcatataa
      661 tcctgcataa tcaatccctt aaaaagcctg ttaatggaga actagcctta gcctcactca
      721 cgcttgctaa acccgctaga taacccgctc ttccagcctg tatagctaaa gaaaatgctt
      781 ttgccatcaa agcgatatcc tttgcttcag ctatagctgt atttgccatc actgcactta
      841 ctcccatttg catagcctcg cacgcttgtg caggagttcc aatacctgca tctacaatga
      901 taggcaaatc gatctcatta agtaaaattt gtataaattc cttagcacac aagcctttat
      961 tgctcccaat aggtgctgct aaaggcatga tagctgcagc ccctgcatca cgcatagctc
     1021 tagctgcata aagatcagca tgcatataag gcaaaggggt aaagccttct tttgctaaaa
     1081 gttcacaagc tttaatggtt tcataattat caggcaacaa atacttacta tcgcctataa
     1141 cctctatctt tataagctct ccacagccaa gctctctaga aagtcttgcg atacgcaaag
     1201 cttcatcagc atttctagct cctgaagtat taggcaagag ggttatattt ttagggatat
     1261 aatcaagtat attagcaatc tctcctgtat ttgcacggcg caaagccagt gtaatgatct
     1321 gtgctttagc ttcttctatg gctgatttta taagctctaa agaatacttt cctgatccta
     1381 aaataaatct tgatttaaat tcatattttc ctatttttaa gctatcattt tttaaatttt
     1441 cttgcatttt ttactcctta tttgccaaaa gctctaagac aagattgctt tgatgtccag
     1501 cgcaaatatt tacacgcggt gccataagcc catttcctac tttagcacca tttaccaaat
     1561 ccccacacac atagaaattt ttagcaattt ttcttgtttg tatactattg ctatcgccat
     1621 atcctgcaag ccctgaagca cagattaaag taatgtcttt ataaaatcta tgaaaatttt
     1681 gtgctatcat agcctttgca agcgcgccat caaaagcctc acagactata tctatacctt
     1741 taaataaatc aggcaaattc tcttcatcga tttttaaagt gcaaatttca gttttgatat
     1801 aaggatttat ttcactgatt tgctctttta aagcttcggt tttaaatttc cccaaatcac
     1861 ttacgcggta agcttggcgg ttaagattgc taggttcaac cacatcaaaa tcaatcagct
     1921 ttaaataccc cacaccgctt cttgctaaat ttatcgctat atgtgagcca agcccaccta
     1981 aaccacaaac cgctacgctc gaaatcttaa gcttatcgtg aagttttggc gtatgtcttg
     2041 ctctcatcat cgcatctaag gcatcttttg gaggtagggc atttctttct atacaaaaaa
     2101 gctcatcgtt ttcgtgaatt tttatatttt ctttcgttgc aaaaccattg ataatccaca
     2161 catcattttc atttttactt acacttttga aaaaatccaa actggtgctc aattttgtat
     2221 ctagttcctt gccattaaat ttaattctca tcagccacct cctacaaaac ttacaatttc
     2281 agctttatcg ttttctttta agatcaaatt ttcaaattcg ctcttaggta taatctctcc
     2341 gtttaattct aaggcgataa gttcgatttt aaaacccttt tctttgataa aatccataaa
     2401 tttaagctct ttaagctcaa atttttctcc gttaataatc atttaattcc ttttgtaaat
     2461 ttatagtttc ttttataact ttacacattt ttagcaaatg ctctagttct tctttggagc
     2521 attcataatc attgcgatat tttaaccatt gttttatgac ttgataaccg cctatagtaa
     2581 attgccaaat ttcagcactt ataggactta tggccaaatc ttcatttaag ataattttat
     2641 tatctatgaa gcgatctttt tcttgatatt tttctatctt aaaatttgcc tttttatctt
     2701 cttttaaaaa gataaaatca atctcatctt tcaaatctct tttaaacaag tgaagttcta
     2761 caagtttttt acctaaagta gcaaaatcat caaaagtctt ttgttctact tcgaaattaa
     2821 tcctagcaaa gcctgttttt aaatactcta ggtatttttc tctatatctt ggattgtata
     2881 aatttgcata gataaaatac aaaatttcct caggactttt gtcttttaag atcttgtgat
     2941 tttctttgta ggctagaaat tcgcttgtga aatttggaat tttttcatta ttaacataaa
     3001 gatagagtgg ggctgtaaaa cttctaaatc caaaaaaatt tccatccgtt atattgctac
     3061 aaacaattga atgagaaaaa taatcatgaa ttgatgattc tataaaacaa agtcctaaat
     3121 tttccttatc taaaaaatgt tgcatggttt tatatctagg gcgtcctaaa aatccttgtt
     3181 tctctgaata aaaagtccat tgaatgtcaa aaggtctata atgtatttta ctaataaaac
     3241 ctgtattatt ttcatattga gttaaagtat tcaaaattat agaattatct aaattatatt
     3301 tttttacatt ttcttctttt gttaaatttt taaaatcttt taaaacattt tccatacttt
     3361 gcttatttag ctgtatggct atattatctt tttcagtttg aattccacta ctataattta
     3421 aaaatataga ctttttatcc tctgccttat cgcttgctaa cgcccaaaaa ttttcatatt
     3481 ctttattttt aaattctctt ttgataaacc aaaaataagg ctcatctaag ctcaattctt
     3541 cccatttgat agcatctaaa cccttttgtc ttacatcatc caaaagagca aatttttcct
     3601 ttcttgaaaa aatattatta tcacctgtag agtagtaaaa taccttagca ccattacttg
     3661 gttcatcttt atactttaca aacaaactta tacaaacacc tacttttata tcaaaaacat
     3721 tttcatcatt cttagcgtct ttatcacttc catgtaaatt cagtatataa atttcatcaa
     3781 aacttttata caagctttct ctcatttttc tatgagtttt tccatttata aaagagttat
     3841 ttgtgataaa acctaaaagt cctttttttt cttcaaataa atcttttttg ttttgctcta
     3901 gcaatttcca ctgtgcaaaa cgcataaatt taatataatc atcatttaaa ggttgtatat
     3961 ttttgtcatt taagccttgt ttgtaaattt ttaaaagctc tagtatatct tcgcctttgt
     4021 ttttgctttt tgcgttataa ggaggatttc ctaaaataac aagcaaatct tgactgtgtt
     4081 taacatctct tgcttttttc cactctgtat ctaaattttc caaaggcata aacatatcaa
     4141 aatttgcaat tttttctaag tccaaagtat tgttaagaaa aatttgaaaa tcagcgtcac
     4201 taaaatttac aaagccattt tttcttaaaa tttgtcctag ttttaacctt gctacaatat
     4261 aaggcacaaa agaaagctca aaaccataaa tatcttttaa aaatttattt tttatggctt
     4321 catttttaaa aacttcactt tctttggaaa taattttttc aaaaacacta gctaagaagc
     4381 ttcctgtgcc tgtagcaaaa tcaagtactt ttacgccttg gtcattaaaa cctttatttt
     4441 tattcaattt agtttttaaa agttcatcaa gagaagaaac tatcatatcc acaatacttt
     4501 ttggagtgta aaaaacaccc ccttctttgc gtttttgcgt agctctcaaa tcatcataag
     4561 cctttaaaaa atcttcatac aaatatatac ttacactttc taaatcttga tttaaaattt
     4621 tacaaagtgc aattttatct atcaatgata aagttttttt gatattttct aaagtatatt
     4681 tgatatcttg cggaagagaa aaagaaggta tagcaaaata cacaaattca cttaaagttc
     4741 taaaagtgct tggtaaaaat gaaatgaaat tttctatggg gattttttct aagtcataat
     4801 catcattttc tatgtaagaa acaaaaattc catatactat agcttgagct aaaatatcgc
     4861 aaaattcttc atcttttaaa tctatctttt ctatattttt aaaggtatct tttgtttttc
     4921 gaaaaaatct tttaaaagaa gaatttgcat cactttcatc aaaagaaatt tttaaagcat
     4981 tgcttaaata aaaactttgc gtacttaaaa cttttactaa ttcttgtttt gattttatgg
     5041 tggtgctatt atcgtcaaaa taagctttaa gaagatttct aaatatgctt atgttttctt
     5101 cttttaaatc aagcttatca tctagcaaat caatatcaaa aacaactttt tcaaaagaaa
     5161 aaagtataaa gcgtttatag tttgtaaaga tgatattggg tgaaatttgc aagtatttgc
     5221 taagttgttt tccttttaaa tgtaaattta aatctacatc taaattttta cactctataa
     5281 agcctacaag atgattatag cttaactctt tttctttatc tataagttta taagttttaa
     5341 aatcaggtct tatagagcct tgcccttttt cactttttgg ctcatgaata attttaactt
     5401 ctttaggttt taattcgttg agtaaatttt caaaacaagt tctaaagcta tgctcattat
     5461 aattttttcc ttcaaaaatc gcttgaattt cgcttgtata ttttttaaat atatccataa
     5521 cttttcctag ttaaaattct ccaccaaatc tttaaaaaca agacaaagtt tttcaaattc
     5581 ttccacgctc actctctcat caatagcgtg aattctatca ttacaaaccc caaattctac
     5641 tacctttaca ccgtattttg caaaatacct tgcatcactt gtaccgcctt tggtattaag
     5701 ctctggcact tcatgagtga ttttttgaac gctttcattc attttttgaa cgattttatt
     5761 atcgatattt gtcaaaaaag cttcgcttga ttgttttagc tctaactcat agtttaaacc
     5821 atgacaaatt ttttccacat aagctcttac atcttctaaa tttgtatcag gagaattgcg
     5881 aacattaaac ataagcctta aatcatttgg agtgacatta cacaccccca tacctccgcg
     5941 aatatcagtt ataacgattt ttgaagggct aaattcagca ctacctggat caagatcaaa
     6001 acccgctaaa agttttaaaa ccggtgcgaa atcatgcaca ggattgatac atttttcagg
     6061 gtaagccgca tgtccttgtt ttccgcgtat caaaagctta ccattgatag aaccacgacg
     6121 ccctatttta atactatcgc cgattttttt aacacaggtt ggctctgcaa ccacagcata
     6181 atcaggtagc atatctcttt cttgcatcca ttctaaaata gccttagttc catatatagc
     6241 ttcgccttct tcatcacttg ttaaaataag actaagtctt gctcctttaa aatccgcatt
     6301 ctttgccgca tccacaaagg ctgctactcc gcttttcata tcttgagcac cccttgcata
     6361 gataaagcct tctttttcca caggcgcaaa agcattatta ctccaaccct cgcctgcagg
     6421 caccacatct acatgcccac caaaagctaa atgctcgcct tcatctttaa attttttagt
     6481 gagtaaaagg tttttaatac cttctttttc tataaaaaaa gcttcaaaat cactcagttc
     6541 catagcgatg aaatttaaag ctccatcatc atttggcgta acagatttaa attttaaaag
     6601 ttcgattaaa aattcttttg cattcatttt ttatcctaag aaagttttat ataataaatt
     6661 aagagcaaaa tactctataa ttatagctga aattatattg attataaaaa caacttttgc
     6721 actaaaaaca tgactatatc ttgccaccac aaaggctaaa gcacttaccc aaaaaagtat
     6781 agccacaaca agccctaaag tcatcaaata agcatgattg ctgcttaaaa ccacacttgc
     6841 agcgctaagc caaaatccta tcacaaaagg atttgaacca tttaaaaaag ctcccttaat
     6901 ataacttttc aaaagacttt ctttaaattc tttatgctct aaatttaagc tttctttctt
     6961 ttttcttagc atcaaatacg ccatataagt taaaaaacaa aaaccaaaaa tcgccaaaga
     7021 acgcataaaa atgacattgt ctaagaaatt taaaagccca aattgcaaca aaagcaaata
     7081 gagcaaatcc acactaaatg cacccaaacc cacggctatg gaatttttaa aagcctttaa
     7141 agcataggtt aaaatcaaaa tatttatagg tccaaaaggc acactcactc caaagcccaa
     7201 aaaaacccca cttaaaaaag aatcaaacat taccatcttt cataaaattt tctatatcaa
     7261 gtgcgatttt atcaatagcg cttataatat cttctatata gattttatca aaatatcgct
     7321 ctaaattcac atctttttcg tagatattta aaatactttt ttcgcacatt gaagcataac
     7381 gccctacagg caaaaccgcc ccacttgtgc ctatgctaat aaataatgaa gtttgatgaa
     7441 gtaaagaata aagcgtagca taagcaggag cttgctcttc aaacatgact atattgtgtc
     7501 ttaaatcctt acttttgcat tttgggcatt gtttatctgt gaatttttca tagcctatat
     7561 taaaaattcc ttcacatttt aggcaacgaa gttcgggcaa aaatccatgc aaatgtacta
     7621 catctttaca ccctgcacgc tctagcaaat catctacatt ttgcgtgatg acaaaaaggt
     7681 ttttacccca tttttctttt aactgtgcga ttttttcatg ggcgtgattt ggctttacat
     7741 tttgaagttg tgcccttctt gcatcgtaaa aatcaagtac ttttttagga ttttttctaa
     7801 agcccgttgc agaacaaacc tccatcacat cgtattcttc ccaaagtcca tcattgtctc
     7861 taaaagtttt aagcccactt ggagcagaca aacccgctcc gcttaatatc ataatgtttt
     7921 tcatcgctaa accttataaa atttacaaag tttagcgaaa aatgctttaa gaaaataaat
     7981 atttttgcaa gattttttct ttttcttttt ctaaaaattc taatttaaga ttaagaaaat
     8041 caatttgttg ttctactaat tcaatgtttt gaacaatttt ttcttgaatt tctagcggtg
     8101 ggagtgagat tgtaagattt tttataaaat tagaattagc catagcaaaa tctcctaatt
     8161 ttctaaattg gccatataag cccatacaag cataatataa atattttgta tttaagattt
     8221 ttagattttt tggatataag ccagtaatat tctgatttgt tgcactttca aaagttaaaa
     8281 aaccgatttt acctatagta gcaccaacta atgcaattaa tgttgtttct ttctttaata
     8341 attttgccga tgatttttgt aatcctaatt ctgtaatttt ttctttaacc tgataatcat
     8401 aaacataaca attttgacat acttcagatt ttacccaatt gatatttcca ttccaatatt
     8461 ctttaatttt tctatcaggt gttcctccgc tttgaatgct aacaatttca tttagttttt
     8521 ctttattcca accttgtttt ggtggtgttg aaaaggtacc taaaatagct tttatattct
     8581 tgacgaattc tttaaatttc tttaagtctt cttgccttgc attagtaaaa tcatctataa
     8641 atgaaaacaa gagattaaag tcaagtttag attctaattt ttgcaaattt tctaaaatag
     8701 aatttagctc ataccccccc ccatcatcta taataccgca tttttgaagt attgtcttga
     8761 ttaaattttg atactcttct acactcattc ttattgtgtt atactgctct tctacctttt
     8821 cacattctgc tacgatttgc ttttgaatct caaagtctgc atttggtatt aaaatagatt
     8881 ctaaatttgt tttattgatt ccgccttgag ccgaacctgt aattttagat tttaaagctt
     8941 gttgtccact ataagaatgt aatatataaa ataaatattt ttgttttgct atattatcac
     9001 aacgcaataa aaaaatatgc tcattaatca ttgcagattt cctaataaat tcattacgca
     9061 ccattgcaat ttttccagtt aatgcaccat ctttacatat taaaatatca aattgtttta
     9121 caattccttt atcttgcaac gcaaaacttt cataaaattc tattggtaca tacttaggat
     9181 tatctaattt gatataccca cttttattgt ctatatgttc tccaccaaga ctcagtgcac
     9241 cgttttcata tttgccgaca ccaccactag gacgctttgc ggtttgaata tctaatacaa
     9301 aatctttaag tcttactaac tcaaatttag aatttataaa aggattagac atctcacttt
     9361 gcgttgaatt gctaggattt aaacttatag ctttattaaa ttccactttt tcaaaatcca
     9421 tcatatcaac aagccttgct tttgtagcat aaatctgcaa ttcttgcggg ataacatcaa
     9481 gcgtatttaa aaaagatttg tagattaaag tattaagctt agtctcattt tgtggattgc
     9541 ctctttcaaa aagtgggctc aaataaggct cgtgcaattc ttttaaacct tcatcacctt
     9601 ttctattact ccactcataa cctaaaaatt tcttttgttc ttttatatca cttggggatt
     9661 ttatgattaa aacttcttga ttaagactta gactaaaata aagcaattta tccttttcga
     9721 tcgcctgagc ataagctaaa aaggctttat cttctaaact ttgtttatct tcgctttctt
     9781 tataaatttt agattcttta agttttttat aatcacttgt ttgcctaaat gcattgcgat
     9841 aatctttaaa ggcttctaac tctgcaagtt tagaatctaa gtttccattt aaaaaattac
     9901 tataaagctc tttatcaaat tttctaaaat cacaatacgt atttagataa ttttgataaa
     9961 agctttcatt gtcttttaaa ttttcagctt ctatgcgttc tttaatcaaa ctataatctt
    10021 gagaaataag atgattttct tgtttaaaag tttctttttt gcgtaaaaat aaaataatcg
    10081 tatttgtccc tgttgctcca aatgtttgat tacctagctc tacaatggca ataaaatcaa
    10141 aattttgaaa taatatttct cttgtatttt tataaataga atctttattt aaaatagaac
    10201 ttggtaagat aatagcagct ttagcattat catttaaaat ttgatttgct cgctcacaaa
    10261 aaaagcattc gatagaatta tttgtttcca tgtttatatc atcgttgaaa agtttataag
    10321 tatttttaga tttatcactt aaagtttcta aaaatccttt tacagaataa ggcggatttg
    10381 ctataagcaa atcaaaacta tttgattcta tttgtggttt tgctttttct ccttctaaat
    10441 tatttgtatt tgctaattca aaagaagcaa gtgcatcagc gtataaaata ttgatttcat
    10501 tttgcccata cattgcactt gataccttag aaaccttact taagcgatac tctttttcaa
    10561 taccataaat atttttataa tgctctttaa gctcatcttc tgttagataa cgcttaagct
    10621 cattggcata ggtgtttaaa aaatgtccag caccacaagc ataatcaatc acccttaaag
    10681 ctttagagtt tttgcttaac atttcttgaa gcggtaaaga atacataata aattcacaaa
    10741 tttgaatagg ggtaaaaaac tgcccttcat cttgcttcat acctttttgc aaaaaaagtt
    10801 caaaaagatt gcctaaaaat tgatttgtag agttttgagt aagcttgtaa tttgcaaaaa
    10861 gctctactat ttcttttaat acaagtgcat tttttaaaaa taattcttta ttatgcactt
    10921 ctaaaaatgc aaaatcatta tttgaataaa attttaattc tttgatgtaa ttttgcatta
    10981 cttcttttaa agtttttatc tttaattgct taaagtcttt ttctatatct tcattagata
    11041 caaaggtaat tttctctcct aagaattctt tcatagcttc tttataaagc cacattaatc
    11101 tatcttgcat atttgcataa gtatctgcca ttacaccaaa atatccaaat ttgagattgt
    11161 ttttattaaa agtttcatca tagattttgc aaagaaaaat atttacaagt ttatcaaagg
    11221 cattttcctt gcctgatata ttatgcttgc gtaaaatttt tgcaaattcg tgatatttac
    11281 cttcttcttt aagttcctta agattatcaa aagttggagt aatttctaaa attttataag
    11341 cattgacatt tgcttcaaaa ataccttgtt taaaatattg cagttcataa ctttctttcc
    11401 aagttttaaa aagttctata ttgttattag attttttata agaattttgt aattcctttt
    11461 cttttagata ttcttcgtta tcataagctt gtatgatgta atttttatat tctaacttat
    11521 cgctaaaatc acttgtataa agacaaagat attttacacc tttttcttgc tgaaaataag
    11581 aaaaaagctg cccgccatct tcttgcattc tattccattc ttttataaat tcactatttt
    11641 tagaatctgt ggttttacat tctataatca aataaggatt tttttcatta tcctttacta
    11701 aaatatcagc cttaccacct tttttatccc taccaagatt ccattttggc tctaactcta
    11761 aatgttcagc cttataacct ttttctaaaa gtctatgcac acattcaaaa actacaaaat
    11821 tttcagggtg tgaaaaatta gaagtagttt tatcgtgaat ttttatttct tttgggtaat
    11881 taatactttg gtttttacaa tctattaaaa gtgtgtaatt attgattgtt tttacataat
    11941 tttcattttt atttttaaag cctaagtttt ctagaacttg ttttaaatta tcttttgtaa
    12001 tcatttattt ccttataatc tcaccacctt agcaccaaag ccaccttgat tgatcggtgc
    12061 gtcattaaag cccttgacac ttttatgagt tttcaaaaac tctcttacag caaaggcaag
    12121 ctttcctgtg cctatgccat gatagattaa aacctcgtca aatcctgcta tcaaagcatc
    12181 tgaaataaat ttatcaagtc tagcaatagc ctcatcactc ctaagtccat gcaaatccaa
    12241 actcacgctt agattgctag gttttgttac actaatactt gtttttggac ttattttagg
    12301 tgtaggagta ctttttttaa gcagttttaa aggcacacga agtttgatcc catcactttc
    12361 aaccatagca tcgtttttag aaatgcttat gattttaccc ttaatttttt catattttac
    12421 aaaatccccc acacgcaatt cttcgttttg ctccatactt ggcaagatga tttctttttt
    12481 aagttcattg gctttattaa gacttctttg cttgtctttc atatctttaa gctgtatggt
    12541 ttttttagct tcttctatgg ctttgtgaaa tttaaattct aaatttctca aactcgtacg
    12601 aaattcttgt tcattttttt ctttttgctc ttttaaggaa agtaaaattt catcgacttt
    12661 ttgctctttt ttctcgacat tttcaagctt agcttttagt tctaattcaa gattgatatt
    12721 tttacccaca agctcttcta aattttcttt atcctcgcca taaagctttt tagcctcgct
    12781 aactaaattc ggcagaatct gataacgcaa agcggtttca aaggcataag attttcctat
    12841 agtacctttt aaaaactcat attttgggcg tgaaagctct tcatcatata aagcagcgat
    12901 gagttcaact tgctcatttt ttgctaaaag catggcaagg cgtttgtggt gcgtggtgat
    12961 gatgatttta agattattag ctatgagttt tgaaatcaac acactatata aacaagccgc
    13021 ttcttcaaaa tctgttccaa gctctatttc atcgatacct aaaagcaaat ttttcttaga
    13081 aaaaagcctg gaaaagtgca acattcttcc tgcaaaagtt gaaatgtcgt ttttaacatt
    13141 ttgcggatct tctatgatgg catcaaattc tttaaaagta ccgattttac tttcacttgc
    13201 ttttatatgc ataggcaaaa gatgtttagc taaaaatgct gcgcttagca tggattttaa
    13261 aagcatggat tttccgcctg catttacccc tgtgatgatt aaaacttgtt ttttaaattc
    13321 caaactcacg ctttttggat tttttaaggc aggatgagcg aaatttttaa gcactaaatc
    13381 cgtactttga tcacacaaaa caaattcaaa atcccttttt ttagcaagca aaaccctagc
    13441 actataatga tcaaaaagat caaaggctgt attgataaat tttaaaaaag gtagattttt
    13501 tgctaaaaaa gctgagaaat ttttagcgta ttcataataa atttcttctt tttgattttt
    13561 gattttttct atatcatttt gcaaattttc aacactaagc ggaacgatgt aaaatcctcc
    13621 cccactactt ctacctatga tttttgcttt aatagcatga ttaaacccac ctcttacaag
    13681 caaggcttcg agattgttta taagatggat ttgtgtatcg ataagataag gcattaaagc
    13741 ttttgtatag caaaatttct taaactcagc tattatgctt tcatttttta atcttagagc
    13801 ggcattaaga tttacaagtc tttcatctaa actttctttt aactcccctt tttcatcgaa
    13861 attcaaacaa agctccaaag ccccgctaac aaattctatc ttttgtagcc aagagtctaa
    13921 atttgttcct agttttattt tttttaactt ttcaaaataa cgaaaaattt ttacaaattc
    13981 aaaaatttca tctaaatgca aaattccttg cttacttaaa tgaaccaagg ctttatcaag
    14041 attgctaagc tctggcatag taggaaattc cacctcgcaa agctcatgta tacgtttaaa
    14101 atgaagatta gaatctcctt gcaaaaaaat ctccttatct cttgcaaaaa gggctttaaa
    14161 ctcttctaaa tagctgttta aatcaagctt tgagatcaat tcttcttttg tatcattcat
    14221 catttaacct acaatcttta atatctatga ttaaagaatt aaaactttga ttattatcct
    14281 ttgaaataaa acttcctgta ccaaattcat aattaaaata cgccttagaa acattgatat
    14341 ctttacataa aatattttta ttttgattaa aagctacgat aatatctgtt cttaaatgac
    14401 ttttttgcgt gttttcaaat tcaaaaaata ccgctaaaac aataaaaatc acaagtaaaa
    14461 taccaaaaaa aggtttagtt tttttgccta atttttcacg caaagcaaaa gtgattaagg
    14521 ctaaaattaa aataattaaa aaatataaaa aaaacctact cattcttttg ccttaatttg
    14581 ttgctgatat ctcccgcacc aaaacctata atcaaacctt catcaaaaac ttgcccctta
    14641 gaagtgacta aaaattttcc ctctcttttg atatcttcta caaataaagc cttaggaaaa
    14701 accgctttta aatcaagttc tataggctct tctcctgcgg cataaacagg taaaattaca
    14761 agctcatcaa caccttcaaa agcctttgca aattccttta aatttgtagc caaacgcgtg
    14821 tagcggtggg gttcaaagat agctgtgatt tttttatatc tacctaattt tgcgtattct
    14881 tgtgctgcgc ttaaagtcgc ttttatttcg gtaggatgat gaccataatc atcaattaaa
    14941 accaaatttt catcagcatg taaaatatca aaacgctttt taataccttg ataattttta
    15001 agcctagttc ttatcatttc tatatctaaa aaatttagag ccgccaaaat cgccaaagac
    15061 gcatcaaggg ctaaatgata tcccatgcca aaaaccttaa attcacctaa atctttcaac
    15121 tcaaagcttg taaaaggttt gaaattttct atacacatgg tgcagttttt gatatcttta
    15181 cttggataaa gtttgattga ctcattttta taatttttca aaaactcatc ttcagcatta
    15241 atcacgcgaa ttttagccac atctaaaaaa tcatcataag ccttgtgaag tctacaaacc
    15301 tcattaccat aatgatccaa atgctctgct tctgcattgg taacaatggc taaaaaagga
    15361 tttgaattta aaaaagagct gtcgctttca tccgcttcaa agatcaaatt ctcactttct
    15421 ttatagatca tatttgaacc aaattctttt aaaatcgctc cgatgatcac agaagcatca
    15481 tcaagtaaag aagctaaaat acttgaagt
//
LOCUS       DARAII010000031        15116 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.031, whole genome shotgun sequence.
ACCESSION   DARAII010000031 DARAII010000000
VERSION     DARAII010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15116)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15116)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15116
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.031"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..480
                     /locus_tag="SB143_000806"
     CDS             <1..480
                     /locus_tag="SB143_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEF9749358.1"
                     /translation="EFEYYDLAKEVLAICAKHKTTCFLHFFDRECLKLGHRYFHMPLA
                     LLRQEPKMSKYFHMIGTSVHSKEELLEAMNYGVNYAFVGHIFESSCKKDLEPRGLEFL
                     NSLLSFSQIPLYAIGGINVQNIASFKDINVAGVCMREVLMREKDVKKYLVECKRNLL"
     gene            495..1370
                     /locus_tag="SB143_000807"
                     /pseudo
     CDS             495..1370
                     /locus_tag="SB143_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            1433..2287
                     /locus_tag="SB143_000808"
     CDS             1433..2287
                     /locus_tag="SB143_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9749359.1"
                     /translation="MKKYVLSLALVGASLLGASELKYQEFDGFKSPESIFVDKNSVYV
                     SNVGEKLEPLAKDNDGFISKLDKNGKVLEHKFISNLNAPKGMMEVVNTLYVVDIDVVR
                     GFDLKSKKEVFNLPIKGAIFLNAIEKLNDDTLLVSDTGTGLVLKVDLKAKKYDELLKL
                     DIAKFGGPNGLYLDRKNDKLFIAGYHPDGASGGVVMSYDLNDKKLSVIKNEKEAYDGI
                     VPYENALLVSSWGENLNGVIYRLEDDKVLKLDLPSIKGPADIFIEGDTLWIPKMVEGK
                     ILKVELKN"
     gene            2295..3455
                     /locus_tag="SB143_000809"
     CDS             2295..3455
                     /locus_tag="SB143_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEF9749360.1"
                     /translation="MLSFRKIFWLNVAIVIIVAFNLRAPITAIGPMIDIIQDEYNLNS
                     TLAGVLTSLPLIAFGSISFIVGYFSPIRAIIVGIFLIFIAELIRSYLGVYGLFLGMLG
                     IGCGIAIANVLLPSFIKEKFPKKMASMMGIYSLVLSISSIAGIALSMPLLNIFDLAGA
                     MVFWSVFSFIALMIYYPQAKNGRFFRTKKKESKKINLLKNPTTWKITLFMGFQSFLAY
                     SLFFWYVQIIVEKGYDKDFATNMVLFSQLVAAPISLFGPLLLGKLKKSLHAPYIAILC
                     AMYAVSFGILLAFDTRFMIMLAAFIVGFPWGGVFGIALLFIAQKSSNAKIAARLSAFA
                     QGFGYLIAAQGQWIIGFFHDMFGNFTSSICILFIVGILVNIFGYLAYKSKVI"
     gene            complement(3448..4464)
                     /gene="murG"
                     /locus_tag="SB143_000810"
     CDS             complement(3448..4464)
                     /gene="murG"
                     /locus_tag="SB143_000810"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEF9749361.1"
                     /translation="MTIVLTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDRAW
                     FESETRFKAKFFLSSRGVVNQNKLGKINSLLHTFKLSKECKQIFKDYNIKAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNKFLKPFAKQFYSAFEKEIVPYPVADKFFE
                     KARIRKELKNIIFLGGSQGAKFINDLALNLAPELQKKGINIIHQCGKNELEKYQQAYK
                     DLNIQADVFDFSPHLEEKMQNADLAISRAGASTLFELCANTLPSIFIPYPHAAKNHQY
                     FNAKFLQDKALCQIFMQNNTYPDEILKAIFKLNLEDISTRLKDMAQKNGADILLEKAL
                     KLIK"
     gene            complement(4461..5624)
                     /gene="ftsW"
                     /locus_tag="SB143_000811"
     CDS             complement(4461..5624)
                     /gene="ftsW"
                     /locus_tag="SB143_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEF9749362.1"
                     /translation="MIADKKLFYLSCILISIGIVFSYSLTVFTVLFFDYNEFHFFIRQ
                     LFFGLSGILIMFFISRLDPDKILAKRIILAILIGSFICIIILPFLPSALATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIKHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGILIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWMADALRVSGNSEPYQISHSLNAIAHGGLFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLFGLGLICFIYLWMILRIFRIAGRCEEKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            5759..7201
                     /locus_tag="SB143_000812"
     CDS             5759..7201
                     /locus_tag="SB143_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEF9749363.1"
                     /translation="MVQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVGRIIEIAKACGADAIHPGYGFLSENYDFAKACEEAGII
                     FIGPKSEVIHKMGNKNIARKLMAQNGIPIVPGTEKLNAYSMDEIKVFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEEELENAFDSCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPVTEEITGVDLIVRQIRIAGGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFTIDIRTTIPFLIAITKTREFRRGYFDTSFIETHMQELL
                     ENTEDRHQDNKEEVIAAIAATLKKIRESRE"
     gene            7201..7437
                     /locus_tag="SB143_000813"
     CDS             7201..7437
                     /locus_tag="SB143_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749364.1"
                     /translation="MDFFDSLKSIKKEMQTHSKEQKSPKNSNKKDMKHFNKEIKTQPP
                     EMNLDKEMQEVFLKQEKLQDEFLEFIKNADIKKI"
     gene            7437..8156
                     /locus_tag="SB143_000814"
     CDS             7437..8156
                     /locus_tag="SB143_000814"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEF9749365.1"
                     /translation="MLEIGFCTLEDECPYLKDRRSRIEYKYIENCSKEINSELIRRGW
                     RRFGRYFSRPICKDCKECLSLRILVDEYQFSRSERRVINKNTNTKIILRKPLLSNEHL
                     FLYDKYHRFMEEKKSWKRYDLNFRQYYNLYVDGFMNFGYELAFYVEDKLVCVDLIDWL
                     EDGISSIYCFYDPDFSHLSLGKFSLLSEIKIAKKEKLKYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEILWER"
     gene            8158..8964
                     /locus_tag="SB143_000815"
     CDS             8158..8964
                     /locus_tag="SB143_000815"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEF9749366.1"
                     /translation="MQIVQTLETINVNTDDINVFQYFKDLITKNFTKVVGRKNKIFSF
                     FEEDEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(8989..12006)
                     /gene="cmeF"
                     /locus_tag="SB143_000816"
     CDS             complement(8989..12006)
                     /gene="cmeF"
                     /locus_tag="SB143_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEF9749367.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRIDG
                     VGKIESKGFLEPQIRIELKPNEFRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGFSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGTGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFQFCFKLDSKLRKIYEREKLN"
     gene            complement(12009..12749)
                     /gene="cmeE"
                     /locus_tag="SB143_000817"
     CDS             complement(12009..12749)
                     /gene="cmeE"
                     /locus_tag="SB143_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEF9749368.1"
                     /translation="MKKILFLLLAFNYAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLIKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVKLGDDFFYKIDQNGTEFKGQISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            complement(12746..14020)
                     /gene="cmeD"
                     /locus_tag="SB143_000818"
     CDS             complement(12746..14020)
                     /gene="cmeD"
                     /locus_tag="SB143_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEF9749369.1"
                     /translation="MLEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESKEKLSLLDKEQSKNYLALNAITLYFNTLSLKKILLANQQKVAFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FVNLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            14146..>15116
                     /locus_tag="SB143_000819"
     CDS             14146..>15116
                     /locus_tag="SB143_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEF9749370.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTEKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLND"
BASE COUNT         5137 a         2170 c         2577 g         5232 t
ORIGIN      
        1 gaatttgagt attatgattt ggctaaagag gttttagcta tttgtgctaa acataaaaca
       61 acttgttttt tgcatttttt tgatagagag tgtttaaagt taggacatcg ctattttcat
      121 atgccacttg ctttgttaag gcaagagcca aagatgagta agtattttca tatgataggc
      181 acttcagtgc atagtaaaga agagctttta gaggcgatga attatggggt aaattatgct
      241 tttgtaggtc atatttttga gagttcttgt aagaaagatt tagagccaag ggggctcgag
      301 tttttaaatt ctttactttc ttttagccaa attccacttt atgctatagg tgggattaat
      361 gtgcaaaata ttgcaagctt taaagatatc aatgtagctg gtgtttgtat gcgtgaggtt
      421 ttaatgcgcg aaaaagatgt gaaaaaatat cttgttgaat gtaaaagaaa cttgctttga
      481 tgaagagtga aacaatggag caaattcttt ccttgccaca agatttaaaa caattaaaag
      541 gtgtggatta taaaaatttt aaatcctgta cttttgcaaa atatacccaa gtaaagcacc
      601 tcacactctt cttttgtcaa tgtaggcagc catcttttaa cctttgtaag aaaaggatat
      661 aaaattttac atacggtatc aaaagactat aaaatcgact tttaaaagcg ggaaattata
      721 ctttaagcaa tgtaggactt agtagcggtg tttatgaagc ttatttgttt ttctttgata
      781 atgctttttt aatcgagctt atttataagt ataaagatct ttttaaacta gaacaagcaa
      841 gcgaggagag tgaaattttt tgggtaaaaa atgataaaat tttacaagga attttagaaa
      901 gttttacccc gcattttgat gagaatacac aaattttaga tcccatagtc agtcttaaat
      961 ttgaagagat ttttttgcat ttacttttaa ataaaaatac ttatttcata ggctttttag
     1021 ctggaatttt aaaagaattt cgtttagatc tttcgcagct ttttgagtat tgtgggagag
     1081 aatttgtaag cgtgagcgaa atggctgatt ttgcaaagct tgattttgct actttttcta
     1141 gagaatttaa aaaatgcttc gggcaaagtc ctaaaaaatg gctagatgaa aaaagattgc
     1201 aaaaagctaa agttttgctt gaattttcta aaaaaaatgt aaatgaaata gctaatgaat
     1261 gtgctttttc ttcagtggct tggtttatcg agagatttaa agaaaaatac aatcaaaccc
     1321 ctaagcaata tcaaaaatca aaaaacttgt attttttatc aaaaaactag cacacttttt
     1381 ctatctaaat caatataatc agcataaata tttttaacaa aaggagaaaa gtatgaaaaa
     1441 atatgtttta agtttagcgc ttgttggagc aagtttgctt ggagcaagcg agttgaaata
     1501 tcaagaattt gatggcttta aaagccctga aagtattttt gtagataaaa attctgtata
     1561 tgtatctaat gtaggtgaaa aacttgagcc tttggcaaaa gacaatgatg gttttatctc
     1621 taagcttgat aaaaatggca aagtgcttga gcataaattt ataagcaatc taaatgcccc
     1681 aaaaggtatg atggaagttg taaatacact ttatgtggtg gatattgatg tggtgcgtgg
     1741 ttttgatttg aaaagcaaaa aagaagtgtt taatttgcct ataaagggtg caatttttct
     1801 aaatgctatc gaaaaactaa atgacgatac acttttggta agcgatacag gcacaggact
     1861 tgttttaaaa gtggatttaa aagcgaaaaa atatgatgag ttattaaaac ttgatatcgc
     1921 taaatttggc ggtcctaatg gactttactt agatagaaaa aatgataagc tttttatagc
     1981 aggatatcat ccagatggtg ctagtggcgg tgttgtgatg agttatgatt taaatgacaa
     2041 aaaactaagc gtgattaaaa atgaaaaaga agcttatgat ggaatcgttc cttatgaaaa
     2101 tgccttactt gtaagctctt ggggtgaaaa tttaaacggg gtgatttatc gcttagaaga
     2161 tgataaagta ttaaaacttg acttaccttc tatcaaaggt cctgcagata tctttataga
     2221 gggtgatact ttatggattc ctaagatggt agaaggtaaa atacttaaag tagaacttaa
     2281 aaattaagga tttaatgctt tcttttagaa aaattttttg gttaaatgtt gctattgtca
     2341 taattgtagc atttaacctt agggctccta ttactgcgat aggacccatg atcgatatta
     2401 tccaagatga gtataatctt aattccactc ttgcaggtgt gcttactagc cttcctttga
     2461 tagcttttgg tagcatttct tttatagtgg gttatttttc tcctattcgt gcgattattg
     2521 ttggaatttt tcttattttt atcgcagaac ttattcgttc ttatttaggt gtttatggtt
     2581 tatttttagg aatgcttggt ataggttgtg gtatagctat tgccaatgtg ttattgccaa
     2641 gttttattaa ggaaaaattt cctaaaaaaa tggcaagtat gatgggaatt tatagtcttg
     2701 ttttaagcat ttcttctata gcaggaattg ctttatctat gcctttgtta aatatatttg
     2761 atttagcggg tgctatggtt ttttggtcgg ttttttcttt tattgcctta atgatttatt
     2821 atccccaagc taaaaatggc cgcttttttc gtaccaagaa aaaagagagt aaaaaaatca
     2881 atcttttaaa aaatccaacc acttggaaaa tcactctttt tatgggtttt caaagttttt
     2941 tggcttattc tttgtttttt tggtatgtgc aaataatcgt agaaaaaggc tatgataaag
     3001 attttgcaac caatatggta cttttttctc aacttgtagc cgctccaatc tctctttttg
     3061 gtcccttgct tttaggaaaa cttaaaaaga gtttacatgc gccttatata gctatattgt
     3121 gcgcgatgta tgcggtatct tttggaattt tacttgcatt tgatactcgg tttatgatta
     3181 tgcttgctgc atttattgtg gggtttcctt ggggtggtgt ttttggcatc gctttgcttt
     3241 ttatcgctca aaaaagttct aatgcaaaaa tagctgcaag actttcggct tttgctcaag
     3301 ggtttggata tttaatcgca gcgcaagggc aatggatcat aggatttttc catgatatgt
     3361 ttggaaattt tacaagctct atttgtatac tttttatcgt gggcatactt gttaatattt
     3421 ttggatattt agcctataaa agcaaagtta tttgataagc tttaatgcct tttcaagcaa
     3481 aatatctgca ccattttttt gtgccatatc tttaagcctt gtagaaatat cttctaaatt
     3541 tagcttgaat atagctttta aaatttcatc aggataggtg ttattttgca taaaaatttg
     3601 acataaagct ttatcttgta aaaatttagc attaaaatac tgatgatttt tagcagcgtg
     3661 agggtagggt atgaaaatac ttggtagagt attggcacaa agttcaaaaa gtgtgcttgc
     3721 acccgctcgc gaaatagcca aatctgcatt ttgcattttt tcttctaaat gagggctaaa
     3781 gtcaaataca tcagcttgta tatttaagtc tttataagct tgttgatact tttcaagctc
     3841 gttttttccg cattgatgaa tgatattaat gccttttttt tgaagttctg gagctaggtt
     3901 taaggctaag tcgtttataa atttagctcc ttgggatccg cctagaaaaa tgatattttt
     3961 taattctttg cgaattcttg ctttttcaaa aaatttatct gccacagggt agggtacgat
     4021 ttctttttca aaagcgctat aaaattgctt agcaaaaggc tttaaaaatt tatttaaaga
     4081 accgcttttt gaattttgct cgtgaataaa taaaggcaag tgtgaaaaca aagcagcaaa
     4141 agaagcagga gcagcactgt atcctcctac gctaaaaacc gctttgatat tataatcttt
     4201 aaagatttgc ttacattctt tactaagctt gaatgtgtgg agtaaggaat tgatttttcc
     4261 aagtttgttt tgattgacaa ccccacgaga acttaaaaag aatttcgctt taaaacgagt
     4321 ttcgctttca aaccaagctc tatcttgacc attttgactt cctatataaa cacactctat
     4381 gtttttttta atcgcacttt ctagtaaaca tcgcacaatg gctaggtgtc cacccgttcc
     4441 gccacctgtt agaactattg tcataattta accttttttg aaatcattaa aacatatcca
     4501 attcctatac aaattgccca cattgaactt cccccatagc ttaaaagagg tactgcaacc
     4561 ccttttaaag gcgtaagaga aatgatacca aaggcattca taaagaatga aaagagtaaa
     4621 agcaaagcaa tgcctgaaca aaatataaaa tcttgttttt cttcacatct tcctgcaatt
     4681 ctaaaaattc ttaaaatcat ccaaagataa ataaaacaaa taagccccaa gccaaaaagt
     4741 cctatctctt ctgtgatacc tgaaagaacg aagtcagtat gcacctcact taaaaaacca
     4801 agtttaaaag tacctagccc aagtccttca ccaaataacc ctccatgagc tatggcattt
     4861 aaggagtgtg aaatttgata aggctcgcta ttgccactta cccttaaagc atctgccatc
     4921 caatcaggaa gcataggcaa gaaagcatct tgtatatttc cccaccaaga agctatcctt
     4981 tggatacgcc tttgattgct aaaaattacc atgattccta tcatcataat gattaaaatt
     5041 ccaaaggcaa aaagtctttt gctagcacct gcaaaaaaag ctagagctaa aattaaaaag
     5101 aaagaaataa cgctttgccc taaatcattt tgtgtgatgt aaatatagcc tatcacgata
     5161 gaagctaaaa tacaataagg caagagaatt aaagcttcat gcttaatcgc ttttttgcta
     5221 tcatcaatgc gtcttgtata actccaagct aaaaaataaa tcagtcctat tttaaaaaat
     5281 tccacaggtg aaatagaaag aggtcctaag cgaatccaac gctttgcgcc cccactagca
     5341 gttgccaaag cagagggtaa aaaaggcagg ataataatac atataaaaga gcctataagt
     5401 atggctagga taattctttt agcaagtatt ttatcaggat caagacgaga aataaaaaac
     5461 atgattaata taccgctaag cccaaaaaag agttggcgta taaaaaagtg aaattcatta
     5521 taatcaaaaa aaagcacagt aaaaacagta agagaatatg aaaatactat acctatgctt
     5581 attaaaatgc aacttaaata aaataatttt ttatcggcaa tcatgtaaaa ttgtaatttt
     5641 tctttcggaa taatttaaaa gtttattata actaaaataa attaaatttt ttgctaagtt
     5701 tttgtaagga tattttgcta gaatatgagt atgtaaataa aatttataaa ggcaaattat
     5761 ggtacaaatt cataagattc ttatagcaaa tcgtgctgaa atagctgtcc gtgtaatccg
     5821 tgcttgtagg gatttacata ttaaaagtgt tgcggttttt acagaacctg atcgtgagtg
     5881 tttgcatgta aaaattgccg atgaagctta tcgcataggc acagatgcta taaggggtta
     5941 tttggatgta ggaagaatta tagaaattgc taaagcttgt ggggctgatg ctatacatcc
     6001 tggttatgga tttttaagtg aaaattatga ttttgctaaa gcttgtgagg aagcaggaat
     6061 tatttttata ggtccaaaat ctgaagttat ccacaaaatg ggaaataaaa acatagctcg
     6121 taaattaatg gctcaaaatg ggattcctat cgttccagga acagaaaaat taaatgctta
     6181 tagtatggat gaaatcaaag tatttgcaga aaaaataggc tatcctgtga ttttaaaggc
     6241 ttcaggaggt ggtggcggac gaggaattcg cgtcgttcat aaagaagaag aattagaaaa
     6301 tgcttttgat tcgtgtaaaa gagaagcatt gacttatttt aacaatgatg aagtatttat
     6361 ggaaaaatat gtagtcaatc ctcgccatat agaatttcaa attttagggg ataattatgg
     6421 aaatattatc catctttgcg aaagggattg ttctattcaa agaagacatc aaaaagtgat
     6481 cgaaatcgca ccttgtcctg gaatttcaga caatctaaga aaaactatgg gtgttactgc
     6541 tgtggctgct gctaaggctg ttggctatac aaatgcgggg actatagaat ttttacttga
     6601 tgattataac cgcttttatt ttatggaaat gaatacaaga attcaagtag aacatcctgt
     6661 aactgaagaa attacgggtg tggatttgat cgtgcgtcaa attcgtatcg caggcgggga
     6721 aattttagat ctagaacaaa gtgatatcaa gccaagaggt tttgctatag aagcaaggat
     6781 tacggctgaa aatgtatgga aaaatttcat tccaagtcca ggtaagatag gggagtatta
     6841 tccagcactt ggaccatctg taagggtgga cagtcatatt tataaagatt ataccgtgcc
     6901 tccttattat gattctatgc ttgcaaaatt aatcataaaa gctacaagtt atgatttagc
     6961 ggtcaataag cttgaaagag ccttaaaaga atttaccata gacattagaa caactatacc
     7021 gtttttgatc gcaattacta aaacaagaga atttagaaga gggtattttg acacttcttt
     7081 catagaaaca catatgcaag aattattaga aaataccgaa gatcgccatc aagataacaa
     7141 agaagaagtt atcgccgcaa tcgcagctac cttaaagaaa atacgcgaaa gtagagagta
     7201 atggattttt ttgatagtct aaagagtata aaaaaagaaa tgcaaacgca ttctaaggag
     7261 caaaaaagcc ctaaaaattc aaataaaaag gatatgaagc attttaataa agagataaaa
     7321 acacagccac cagaaatgaa cttagataaa gaaatgcaag aggttttctt aaaacaagaa
     7381 aaattacagg atgagttttt ggaatttatt aaaaatgcag atattaagaa aatttaatgc
     7441 tagaaattgg tttttgtact cttgaagacg aatgtcctta tctaaaagat aggcgttcta
     7501 ggatagagta caaatatata gaaaattgct ctaaggaaat taatagcgag cttatcaggc
     7561 gtggctggcg tcgttttggt aggtattttt ctcgtcctat ttgcaaggat tgcaaagaat
     7621 gtttaagcct tagaatttta gtagatgaat atcaattttc gcgcagcgaa agaagagtga
     7681 tcaataaaaa cacaaatacc aaaatcatat taagaaaacc tttgttaagc aatgagcatt
     7741 tgtttttgta tgataaatat caccgcttta tggaagaaaa aaagtcttgg aaaagatatg
     7801 atttaaattt cagacaatat tacaatcttt atgttgatgg atttatgaat tttggttacg
     7861 agcttgcttt ttatgtggag gataagcttg tttgtgtgga tttaatcgat tggcttgaag
     7921 atggaatttc tagtatttat tgcttttatg atccagattt ttctcatctt tctttgggta
     7981 aattttcttt acttagcgaa ataaagatag ccaaaaaaga aaaattaaaa tatatttatt
     8041 tgggatattt tgtaaaaaag tgtcaatctt tatcgtataa agccgattat acacccaatg
     8101 aaattttaaa aggcacaaaa gagctttttg agaatgagat tttatgggag agatgagatg
     8161 cagatcgtgc aaactttaga aactatcaat gttaataccg atgatattaa tgtttttcag
     8221 tattttaaag acttaattac caaaaatttc acaaaggtag tagggcgtaa aaataagatt
     8281 ttttcttttt ttgaagaaga tgaaattccg caacgccgtt attttttaaa ggttttagat
     8341 caaaagtatc gtaaaagcac aaatgaaggt atagagaatt tacaagatgc tcattttaaa
     8401 acttttagat taatttttga gcaaaataat atgcttaagc ctatgttgtt tatcaagatt
     8461 gattttgttg cgggtagaat tttgatgaag ttaagctcta atgaaaaatt atttattact
     8521 tatataagaa attattttca agatcataat atagaatata atgaaatgac aaatattcta
     8581 attttagaat ataaaaacga gaataccctt gaactttttg aagcttttgc agatgagagc
     8641 gagcatttaa aatattgcgt gaattttgaa gttgaccgcg aagagtataa aaaatttcgc
     8701 caaaatattc acaataaaga aaatatgaaa tggaaattta atgctttagc taagcttttt
     8761 agtaattatt ttaatacttt agaatgcact ccgcaaaatg atcttagtga aatcagacaa
     8821 aaatatttga ttttggtaaa actttatcat cctgattttc atcaaggaaa aagtgcaata
     8881 gaaaaagctt acgcaagaga acagtttgaa aaaatacaaa tcgcctatga taacttaaaa
     8941 gcactttata agaataatac ttaaaaaaaa ttaaattaat cattttggtt aatttaattt
     9001 ttctctctca taaatttttc ttaatttgct atctagttta aaacaaaatt gaaaaagtgc
     9061 aggtactacg agtaaggtaa gcaaagtcga acttataagt ccaaagataa tggctattgc
     9121 cataggagaa ttagcttcat agcccgcacc ccttgaaaga gcaagtggga gcatagcaaa
     9181 aatcatagca aaagttgtca tcaatatagc ccttaagcgc gattttccag cgattaaaag
     9241 agctttatcg ggatctaaac cttcatggca ttttttatta gctacatcta cgagtaaaat
     9301 agcatttttc cctaccatac caaaaagtaa gatgatggca ataagtacaa aaagtgaaaa
     9361 attatgccct gtgataaaaa gccctataga agctccgcca aaggctaaag gcatggttat
     9421 catgatgatt aaaggcagaa taaaactttc ataaagtgcg gctaaaacaa gataaattaa
     9481 aacaaaagca agtgctactg ccatagcaaa accttgcacg gtttcaccta aaagattgat
     9541 aaagcctgaa aaagcatagc taagacttgg attgttattt aaaattttat ccatattatc
     9601 tagtaaaagt ttttgcaccg ctcctaagga aagatcattc actccagctg tgattttcac
     9661 agagcggttt ttattgtaac gattgatagt ttttaaatct ttactgtata taaaatccac
     9721 cacgcttgaa agttctaaat ttataccttg gttgttttta atgctaatgc gctttaaagc
     9781 ttctatgtct tttttaaatt ctggagcaaa acttaggata atatcatctt ttgaattgcc
     9841 tctatccatg cttcctacgc taagttgcga gaaagaatac cctaaaaccc cagcgatata
     9901 ttgaggattg acatctaaaa gtttggcttt ttctttgttg atgtgtaagg ctacttcatc
     9961 ttttgtagca ttagcattat cacttatatc tacaatgcgt gcattagtac ctaaaatttc
    10021 ttttgcctga gaagcagctt cttttagagt gtttaaatca tctcctaaga ttaaaaattg
    10081 cacgggatca tcaatgcctg taccctctat ctttggaagt tctaaaattt tgatttttaa
    10141 actttcatct tgaaattttt gacgatataa acttactatg gcactttgtc ttaaatttct
    10201 ttcgtctaaa tttttaagtt taacataaat tttagccttt gtagcatctt tggcatcatc
    10261 atagcctaca agtaaaaaag cgtatttgac attgctatca tttttgattt tttcaagcaa
    10321 atttaaactt ttttctttca tggcttctaa acttaaatcc tttttgcttt caagcaaaac
    10381 ttgaatttca ctatcatctt ccataggtaa aaaatcaagc cctatgcgag tggctaaagc
    10441 aaaagaaaac cctataaaaa caagagtggc taggataaat tttactttat tttgtaaaat
    10501 tttatagagt aaattttcat acttttgctc tattttttca aaaaaagctt ctgttttttc
    10561 atagaacttg ttttcttttg gatttaaaaa tcttgcccca atactaggta ttaaaaatac
    10621 agaaaccaaa aagcttataa ctatcccact tgcaacgctt atgcctaagg cattgaaaaa
    10681 aagccctgat atagagttca tataagaaat agggataaaa acacaaagta aaactatact
    10741 tatgcttaaa acgctaaaac ctatttcatt gatacctaaa aaagcagctt gtaaaggcgg
    10801 ataagttttt agttttttag caatattttc aatcactact atagcatcat cgataaaaat
    10861 tcctatgctt aaggttaaag ctataaaagt taagcggttt aaatcatagc ctaaaagatc
    10921 gataataaaa aaagttgaaa tgatagaagt aggtatagct atgcaagcaa tgagagttgc
    10981 acttaaattt cttaaaaata aaaacacgat aacaagggtt agaaaaatcc ccaaaaccat
    11041 atcaaaaatc acttgagaaa ggtgcttgtg gatatttaag cttttatcat aaagcatatt
    11101 aatgcttata tcttttggaa tttgtttttc taaaataggc aaggcatttt tgacattttt
    11161 aatcatttca agggtgttat aatttgtaat ttttccgagt tctaaaagca ccccttcttt
    11221 accttcgtat aaagcacttt gtttttcatc ttcataaagg cttgaaatat tagcaatatc
    11281 acttaaaaat actcctgttt ttatgcgaag attgctaagt tcttctaaat ttgtggcttc
    11341 aaaatagcct ttgatgatat agttatcttg attgttgtta agttcaccta gggcttgttt
    11401 aaaattttga cttttgatga tatttgctac atcaagggcg ttaagattgt attttctaaa
    11461 ttcgtttggt tttaattcta tgcgaatttg aggttctaaa aaccccttag attcgatttt
    11521 tcctacccca tcaatccttt gcaaaaaagg cttgatttta tcattaattt cacgcatgag
    11581 ttgtaattta tctttagaat atagaaaaag tgaaatagca gaaccagaat ctgaactgat
    11641 tttttcaatt tcaggcttag aaggtaggct taaagttcct attttatcac gcacatcatt
    11701 ggcagctact tcaagatttt tacccagttt aaactcaact acacttacac taaaattatc
    11761 atacgcagct gaggttatgg tctttactcc atcgatttca cttaaagcat tttctatttc
    11821 tttagtgact tttgattcta cgaaatttaa atccccattt atcttgcttg tgatttttat
    11881 aagaggtatg gaaacattag gaaataaatt tacactcatg ctaaaagcag agattagccc
    11941 aaaaatcata agagctaaga aaaacattag cacggtaata ggtcggttta tagctagttt
    12001 aaacattttt aatctttagt gatgattcta ccttcaccaa aaagccctgg tgttagattt
    12061 gtggtttgca cttcagcata aatttttctt gtttttactt ctatgcttgg ataaataagg
    12121 ctgatttgtc ctttaaattc tgtgccattt tgatcgattt tataaaagaa atcatcacct
    12181 aatttaactt tatctttgta tttttcatca aaacttaaaa tcagtttgct ttgcggatag
    12241 gaaaaaattt ctattaaagg ttgagctact cctcctactc cttcgcccac ttgtataaat
    12301 ttgtttgcga taatagcatc ataaggtgca cgcaattctt tttttgccat gatattttta
    12361 taataagcta tattgatttt tgctttgatt aaatttaaat tagctgcatc aaatttagct
    12421 ttcatatctt catagctttg tttgtctata acattttcta cagctttgat tttttgcatt
    12481 ctgcttttgg tattttcgta ttctacaagg gcaagttgat aagaattttg agcattttga
    12541 agagctattt tttcactttc ttgatcaaga gcaagtaaaa gttctccttt gctgactttt
    12601 tgtccaattt ctacaggaat tttttgaact aaacctatgc tttcaagggc aagcttgctt
    12661 tgttttgatg cttctacatt gaaactcgcg taaatttctt cgccaaaggc gtaattaaaa
    12721 gcaagaagta aaaatagaat ttttttcatt ctttaacctt tgaattaaga tctatacccg
    12781 cattaaaata ataatttgct ttagtaattt caaattcatt tttagcaagc tctaaatcgc
    12841 tttgtgcttt aaatttagcc tctaaagctt gaagatattc cacataagaa acaagtcctg
    12901 cttggtattt tttatctaca ctttcaaaag ccaaatttgc agcatttaag ctaagattaa
    12961 gagctaaaat ttgttcttgt aaaactttta aacttttgtc taaataattt aattcttctt
    13021 tattttttct ctcactaaat cttgcgtttg cattggctat ttgaacgttt aaacgctctt
    13081 tttcaacttc tttagccctt gcattgaaat caaaaatttt ccattccata cctaaaataa
    13141 actgattacc ttgagaatat ttttctaaga attgatctgc taagtttaca aaaggagctg
    13201 gaacttttgg attataattg tttttataaa agttaaaatt atcttgaata taaaattttg
    13261 gaaaatattc agcttttgct aaatttacac tttctttagc aagattgatt tgttctttag
    13321 ctatcattac ttcatagttt tgactttttt cttgttgcgg attttctaaa aaagcattcc
    13381 cttgcacttt aaaatctgta tcacttaaaa ttttaatctc tttttgtata ttggcaagtt
    13441 ttaattcatt ttgactgagc tctaataagc ttaaatggta tttagcttta atgctttcaa
    13501 gttcatcttt agggctaagt cctgcgtcgt aaaatttttg caatctttca aaagttgatt
    13561 ttaaaaaagc tactttttgt tgattggcta gtaaaatttt tttaagactt agggtgttaa
    13621 aataaagtgt gattgcattt aaggcaaggt aatttttgct ttgttctttg tctaaaaggc
    13681 ttaatttttc tttgctttct aaagctctta aattagcctc tctagcaccc ccatcaaaaa
    13741 gtaaaaaatt aagagaaact ttagcaaata aactttcttg tggatcgata atgaagcgat
    13801 ctttattgtt ggctacataa gctgagttta gactaagaga gggtaggtaa tttctaaaag
    13861 cttgttcttt gtctaaattt gcttgttcgc tttgcatttg cttaatgaga taggattcat
    13921 tattttgact tagtgctata aattcgtgca aattagaagc tagcattgct aagggataaa
    13981 gagctaaaaa tatagctgat tttaaatatt tttcaagcat ttgatatttt aatatgcttt
    14041 atataaattt caattgaagt tttttatata aaataaaatt tatttgtttt aaacataaat
    14101 tttgttaaaa tcctagcttt aaaattttat atttaggatg aaattttgtc ggtaaaaaat
    14161 attagaaatt tttccatcat agcacatata gatcatggaa aatctactct tgcagatagg
    14221 attattagcg agtgtggtgc tattagcgat aggcagatga gttcacaagt tatggatact
    14281 atggatatag aaaaagagcg tggtatcacc ataaaagcac aatcagtgcg tttaaattat
    14341 aaatttaata atgaaaattt tgttttaaat cttattgata ctcctggcca tgtggatttt
    14401 tcttatgaag tgagtcgttc tttggcaagt tgtgaagggg ctttgcttgt agtagatgct
    14461 tctcaaggtg ttgaagcaca gactatagct aatgtttata tagcgcttga aaataatctt
    14521 gaaatcattc ctgtgattaa taaaatcgat ttacctaatg ctgatgttga gaaagtaaag
    14581 catgaaatcg agcatattat aggtatagat tgcaaagatg caatttgcgt gagtgcaaaa
    14641 acaggagtgg gtataaaaga gcttatagaa acaattatta ctaaaatccc tgcaccaaaa
    14701 acagatgatg aagctcctac taaggcttta atttatgatt cttggtttga taattatcta
    14761 ggggctttgg ctttggttag aatttatgaa ggaagcattg ctaaaaatga tgaagttttg
    14821 gtaatgagta cagaaaaaaa acatatagtt caagatcttt tttatcctca tcccttaagt
    14881 ccaattaaaa ctcaatcctt gcaatcaggc gaagtagggg ttgtagtgct tgggcttaaa
    14941 acagtaggtg atgtgcaagt gggcgatact atcaccttag taaaaaacaa agccaaagaa
    15001 gccatagggg gatttgaaaa ggctaaagct tttgtatttg caggacttta tcctatagaa
    15061 acggataaat ttgaagactt aagagatgct ttggataaat taaagcttaa tgatag
//
LOCUS       DARAII010000032        15115 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.032, whole genome shotgun sequence.
ACCESSION   DARAII010000032 DARAII010000000
VERSION     DARAII010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15115
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.032"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            109..879
                     /locus_tag="SB143_000820"
     CDS             109..879
                     /locus_tag="SB143_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEF9749371.1"
                     /translation="MKKFLTAFLVAFTGLFLVACQNTKTENNASNEANTTLTLKVGTA
                     PNYKPFNFKQDSKLTGFDTDLIEEIAKKNGIEIVWVETNFDGLIPALKSGKIDMIASA
                     MSATDERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKA
                     IKNAQVQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFS
                     FAFDKNKQKDIIEIFNKGIDEAKTDGFYNTLIKKYELE"
     gene            complement(903..1541)
                     /locus_tag="SB143_000821"
     CDS             complement(903..1541)
                     /locus_tag="SB143_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEF9749372.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWFKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1538..2527)
                     /locus_tag="SB143_000822"
     CDS             complement(1538..2527)
                     /locus_tag="SB143_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749373.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2531..3310)
                     /locus_tag="SB143_000823"
     CDS             complement(2531..3310)
                     /locus_tag="SB143_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749374.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSMILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3311..4150)
                     /locus_tag="SB143_000824"
     CDS             complement(3311..4150)
                     /locus_tag="SB143_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749375.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVTPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4147..4956)
                     /locus_tag="SB143_000825"
     CDS             complement(4147..4956)
                     /locus_tag="SB143_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEF9749376.1"
                     /translation="MMSKVILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDILISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            complement(4953..6278)
                     /locus_tag="SB143_000826"
     CDS             complement(4953..6278)
                     /locus_tag="SB143_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEF9749377.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANITREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGVDFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKTCKEGED
                     AKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6289..7335)
                     /locus_tag="SB143_000827"
     CDS             complement(6289..7335)
                     /locus_tag="SB143_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEF9749378.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYDIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7452..8435
                     /gene="corA"
                     /locus_tag="SB143_000828"
     CDS             7452..8435
                     /gene="corA"
                     /locus_tag="SB143_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEF9749379.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSVAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLIREFKNNDEEQNSIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8456..8998
                     /gene="mog"
                     /locus_tag="SB143_000829"
     CDS             8456..8998
                     /gene="mog"
                     /locus_tag="SB143_000829"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEF9749380.1"
                     /translation="MDIINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIAECLEPVFPAIPYCIDLIGGA
                     CIEGNDEVIQVFRPKKKCQN"
     gene            complement(8995..9180)
                     /locus_tag="SB143_000830"
     CDS             complement(8995..9180)
                     /locus_tag="SB143_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEF9749381.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLVRANKF"
     gene            9309..10496
                     /locus_tag="SB143_000831"
     CDS             9309..10496
                     /locus_tag="SB143_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEF9749382.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYMLIVNIAWIGFGFLYLKELLISENSRLENTLFLLAFLIITS
                     ILNLPLSIYESFVKDKAHGFSNMTLKLFIKDTIKSLILTLIFGFLILYALLFCYDFFG
                     TFWWLAAFIFAFCVIVIINVIYPTLIAPIFNKMEKLEDENLLSKINDLMKQCGFNANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALSERELLAVLGHELGHFVHKDII
                     KALINGAITMFLLFFIFAHLPDFVYQESHLEGVNGGVFALLFIFANIFSFIISPLINA
                     LSRKNEFAADQHGAKVTSKEDMKNALLALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            10493..11293
                     /locus_tag="SB143_000832"
     CDS             10493..11293
                     /locus_tag="SB143_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEF9749383.1"
                     /translation="MTIKNALIEAKTRLEKHENEALFILCEYLKKDRTWIFLNQDLEF
                     DSKPYFELIKRFQSGEPFEYIFEKADFWGLEFKVKKGVLIPRYDSEILLSQVLKICKN
                     NNFQNILEIGFGSGILSIVLAKELGIKITACDINPKALQLALENAKLHKVEHLIDFKL
                     CDFKQIKENYDFIFSNPPYIQNSYPIDLWVQNEPKEALFGGEKGYEILEEIITFSFER
                     KVKFLACEFGYDQKVILKQILYQKNFQAEFFQDEQGYDRAFVAQFAKK"
     gene            11335..11808
                     /locus_tag="SB143_000833"
     CDS             11335..11808
                     /locus_tag="SB143_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEF9749384.1"
                     /translation="MKAINLFLLAAMIGIELILGIVVAPVIFYPANLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSIINLLFEIYSFAKEDMKFQIKFSKLMLAILILILSLVFV
                     LYFTNTIIKLQNLGEQATKSQEFLSIHNASEVVIKIILLMQVFLYFLSFKIAKKC"
     gene            11842..12591
                     /gene="flaC"
                     /locus_tag="SB143_000834"
     CDS             11842..12591
                     /gene="flaC"
                     /locus_tag="SB143_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEF9749385.1"
                     /translation="MMISDASMMQQNYYLNNAQKASEKALENIAAVRAISGIDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALSDS
                     QKSMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLTTSGLSID
                     NQDNITNFMDQLGALRSEIGSGINAITSNINASVQNSINTKAAENNLLNNDMAKNVND
                     FNSNYLKENAAAFVAAQSNMQLQSKIASLLQ"
     gene            12628..13260
                     /locus_tag="SB143_000835"
     CDS             12628..13260
                     /locus_tag="SB143_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEF9749386.1"
                     /translation="MTLEQILEKTKNIRLVAASKYVDANIIEKLFTQGITEFGENQVQ
                     ALVQKKEILDKKDLNIKWHFIGTLQSNKINLLIKQKPILWHSCNGLKIAKAMDKRLNY
                     KLDTLLEINSANELSKSGLNPDQAIEEYLQIQEECPNLNLCGVMSIGSHSKDQREIEK
                     SFETTYKIYEKLQKHGAKICSMGMSNDFEIAIKCGSNMVRLGSILFKNLK"
     gene            complement(13277..>15115)
                     /gene="dnaE"
                     /locus_tag="SB143_000836"
     CDS             complement(13277..>15115)
                     /gene="dnaE"
                     /locus_tag="SB143_000836"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEF9749387.1"
                     /translation="LTLINNAIKLIKKRYNKDIVWEAIDVNDAKVYKTIQNGNTLGIF
                     QIESGGMQNLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLKKIEYPFDT
                     LESVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKKLKSEFADG
                     AEKQGYDRVKAEELWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPSEFMAALLT
                     SEENNVDKIAVYIDEMKKMNIKLLPPSVNKAIREFSAVEQEDGKDAIVYGLGAIKSVG
                     IPAVENLLEARERGEFKNIDDFLSRIEPTKINKRTLESLIKAGAFDEFGYTRKCLFDN
                     MDNLTEGSKKMADARKNAASSLFGEDELTVGLQVNIVAKNEEFEVMEKLEFEKEILGI
                     YVSGHPLDRFYDKFKEIDYVKSIDFSTLKGSGEILSIGKIESFKSMMSKNNKRYGRLE
                     ILDFYSTFEVTVFESNIEEIENILKNEASKNEAYGFLLSYKAEEGKLDSLALRSIKTL
                     EELQEGEIKAVKKFNAKKNTQENKDFIAEPKEFENNIIELDLSRLNRELVYEIHEIAR
                     SAHNPNEKGNKKLVLKIVSTGSCLLYHTDFVISDSVSEKIINKYAG"
BASE COUNT         5378 a         2518 c         2091 g         5128 t
ORIGIN      
        1 ttattttttt aattaatttt ggcaaaaaat taaaaactgg atttttttgc caattggcta
       61 gctaactttg atataatcat agagaaaatt ttactataaa ggaaaacaat gaaaaagttt
      121 ttaaccgctt tcttagttgc cttcacgggc ttatttttgg tggcttgcca aaacactaaa
      181 acagaaaata atgcaagcaa tgaagctaat actacactca ctttaaaggt tggaactgct
      241 ccaaattata aaccttttaa ttttaagcaa gattctaaac ttacgggttt tgatactgat
      301 ttgattgaag aaattgctaa aaaaaatggt attgaaattg tttgggttga aaccaatttt
      361 gatggattga ttcctgctct caaatcaggt aagattgata tgattgcttc agctatgagc
      421 gcaactgatg aaagaagaca aagtgttgat tttaccaaac cttactatat gagtaaaaat
      481 ctttatctta agctaaaaaa caacgactct cttcaaacaa aaaatgattt agaaggcaaa
      541 aaaataggag ttcaattagg aactttacaa gaaaatactg caaaagctat caaaaatgca
      601 caagtgcaaa gcaataaaga tttaaacata gctgttttag cactaaaaaa caacaaaatc
      661 gatgctattg tagctgatca agatactgct aaaggttttt tagctgaaaa tccagaattg
      721 gtaagtttct accaagaaac agatggagga gaaggcttta gttttgcttt tgataaaaat
      781 aaacaaaaag atattattga aatatttaac aaaggcatag atgaagcaaa aactgatgga
      841 ttttataata ctttaattaa aaaatatgaa ttagaataag cgtgaatttt cacgcttata
      901 gcttaaaaag ttaaaatttc atattttctc tcttttgcaa tttttaaaat tttttcatca
      961 ccattacata caaaggcttt gctaacagac tctagtaaag gtaaatcatt gatagaatca
     1021 ctaaaaaaat aagaatcttt catccatttt tcataatctt tacccaaata ttccttaagt
     1081 cttaaaacct tgccttcctt aaagctataa atcccataag cttttccact aaatttatca
     1141 cccacacgct cgcattttat ggctatgctt tctctcaccc ccaaaaaaga ggcgattttt
     1201 ctaactaaaa attcagccgt agctgaaatt ataatacacc tttgatcttg atatttgatt
     1261 ataagttctt tagctttttc ataaggtttt atataaattt ttataaattc atctactaaa
     1321 gatgaaattc tatcttcatt tttaccctta acactttgaa gaaaaaaagt cataaattca
     1381 tccatatcaa gctttttttc ttgatattgt ttttgataaa aaacgatttt ttctaaatat
     1441 tcttgaggta aaaaaccttt ttcaacacaa aatttaaacc aaagtttagc actatcgcct
     1501 tgtattaaag tatcatctaa atcaaataaa acaagcttca ttttaactct tttgctaaag
     1561 aaagattgaa ttttaaagcg attttatcac ctgcttcata agtactatga gtgctaaaat
     1621 ttaaagtatc taccttaaat tcaatttctt gcactctaac cctatagcgt atgatattac
     1681 ctagcaatga tttttctttg atcttagcct ctaagccttc gttagaaatt tctatggttt
     1741 caggacgcaa ggctatatct tttttaaaat cgtgttttaa acccaagcta tcaagctctt
     1801 tagggcttaa aatattgtaa tttcctataa agctagccac aaaatgagat tctggcaaaa
     1861 gataaagatt gtttgcgttg gaattttgta tgattttacc ctcattcatt aaaataatcc
     1921 tatcggataa ttctaaagct tcttcttgat cgtgcgttac aaaaatagtg gtaagttcaa
     1981 gttctttttg aatttcttta atttgcaccc ttaaatgctt acgaatttta gcatcaagtg
     2041 ccgataaagg ctcatcaagc aaaagtaaat caggtttagt caccaaagat cttgctaaag
     2101 ccactctttg catttgtccg cctgaaagct tatgtggata agttttagcg tattcttcaa
     2161 gctcgacgag ttttaacatt tttttcactc ttttttctat gtccttttta tccatttttt
     2221 tgatctttaa accaaaagct acattttcaa aaacgttaag atttggaaaa agagcgtaat
     2281 tttgaaaaac catacctata tttctttttt gaggacttaa tttagtaaga tctttatcat
     2341 ttaaagaaat ttttcctcca ttaatttggc taagccctgc tatacacctt aaaagagtgg
     2401 attttccaca gccacttggg cccaaaaggg ttataaactc acccttttta gcactaaaat
     2461 taatatcttc aaaaataatt ttatccccat aagctttttt aaaattttta atctttaaat
     2521 aagccatttt ttactcctta atcaaactag ctataaaagt tgttataaaa attaacacaa
     2581 aataaactat taccaaagca ctagaataat gcccactttg atttttgata ttataaagat
     2641 aaacttgcaa agtctcataa gcacttccta caagaatatt tgcgtataaa aattcgccta
     2701 ttaaaaaaga aaaacttaaa aaaactgcca ccaaaattcc atttcttaaa ttaggcaaga
     2761 caagcttaaa aatcgctccc attaaagaac ctccaagcat agcattagat gcgatgagtt
     2821 catttaaatt gacattagac atagcattat ctaaagccct atatataaaa ggcaaagcta
     2881 tagtaaaata agtaaaaatg agtatccaag ctgtgcctcc tatattgtca gcataaagtt
     2941 gcaaaagccc cacacagcta actataggag gtacagcaaa aggcatgata ataagtatat
     3001 ttacaaaggc ttttaatttt aaaaaataat aatttagcac aaaaaccaaa ggaaaaacaa
     3061 gaatcataga aagtaaaata ctgcccacac aaacaagcaa agaatgccaa agagcaagca
     3121 aaaatctttc gtcatgaaaa agttcttgat accatttaag cgtaagatca tcaggcaaaa
     3181 cacttacacc ccaagaagtg gaaatagaat ataaaaaagt agccattaaa ggcaaagcta
     3241 aaaacaaaaa aaccaaaaac aaaactgcat aatgataaat tttagctttt aaactcaaat
     3301 tttcattcat ttaaagcacc ttaaaattat attttttaga aaggaaattg gctataaagg
     3361 taacaacaag catgataata gttataatga tacttaaagc actagccata taaggatcaa
     3421 gattgatatc gcctgcgatt aaagcagcga ttcttacagg agtgacatta aaatttcccg
     3481 aacttaaagc ataaatagtc gcataagctc caaaagcgtt ggcaaataaa atcacaaaaa
     3541 caccaaacaa agcaggagcg agcaaaggca aagctatttt taaccaatat aaaaaattgc
     3601 ctccacctaa cattttacaa gcatttaaat gtgaattttc aagactttta aaagctggaa
     3661 gcaaaagcaa gatcgccaaa ggaatttgaa aatacacata aacaatattt accccgaaat
     3721 tagcataaac actaacaaaa ggctctatac ctaaattctt caaaaacaca ttaactacac
     3781 cattgcttcc aagaactata atgaaagcaa aagctaaagg aactcctgaa aaattactta
     3841 tcatggtatt taaagaaaaa agaaatttac atatttttga tggagctaaa acaaataaag
     3901 aatagctcgc caaaagccct attaaaagtc caaaaatact agaaataaaa ctgatttgta
     3961 aagaatttat aatgctttgt agatagaatt tggactcaaa aatatgtata aaattggcta
     4021 aagaataaat ttcatcctct tctacataaa aagcattaaa aacaatccaa atcaaaggtg
     4081 ctatcataaa aaaagtaaaa actataaaaa aaggtaaaat acttaaaaat gctagaaatt
     4141 tttctttcat tttttggcct ttaaaatttc atcattatat ctcttatcgt gtttaagtcc
     4201 taaaatttca cagatactgc cacaaatttc atcctgtttt atcttggcat tttcatacga
     4261 aaaagcacta ccaaaagtga aaaaaggcac taaaatttca tcttcactta agcctccatg
     4321 acttttaccc tctgtcatac catgatcgct tgtgatgatt acattaatac cttgttctaa
     4381 ccaagtaggc aaatactcag aaatcaaaat atcaactttt ttggttttat tagcatactc
     4441 aatagagtgt gagccaaatt tatgtcctgc atcatctata ttcatagaat gtataagagt
     4501 aaaatctaga ttatatttgt ttcttaaatg ctccccatct gcaaataaat gagaatctaa
     4561 ataatcatct tcataataaa aatgtccata aggcaaagtt aaattttcat cttctatgtg
     4621 gcgatgtaaa gaaggaataa attctttttt attataaagc tcaaaaaccc aatgataagc
     4681 tgcgcctcca gcttttaagc cttgttcttt gcaaaggtca aaaatgcttg tttgttttga
     4741 aaaactcaat ttattattaa ttatcccact taaaacaggc tttacgcctg ttaataagca
     4801 ctcgtataaa ggacgagaca tactaggaag ttcgcattct aaagaataaa atttgcctaa
     4861 attctctttg caaagcgcat ttaaatatcc catatttata ctagcacttt tacaatttaa
     4921 gccatcaagc acaactaaaa taactttgga catcatttac tctttaaaaa atcttttact
     4981 tcaagtaaaa taaactcatt gtcatcagtc ttattaggtt ctctacttga agaataagga
     5041 aagttattgt cattttctac gactatatga gagtcatcta ctatatccac accttctatg
     5101 gtttcaaaag gaaaaacaaa tttatcattt accaaaggct ttttagaaat tttatttcta
     5161 tccttaatat ttaaaagatc tatataagaa attttttgag cttcatgggt tttatcatct
     5221 aatttaacct tgtaaattct tttaaattgg gctacattat taaaacaatg cttagcatct
     5281 tcaccttctt tgcaagtctt atctttagtg ccttcttttt gatctctttc tatgatgatg
     5341 ccgtatttat catctatcat attaaaatca cctatggaat ggcttttatc ttctaagaaa
     5401 tatttataag tttttccggt gaatttttta ttttttacat caaattctat gattcttaga
     5461 tattctttgc ctttttcatt ctcataagcg ttgttattat aaatgcttcc ttctaaaagc
     5521 aaataaagtt tagaaccatc tttagagctt gccatagctt caaagccttt agaacgcttg
     5581 atattaaatt tctcattttc tccatcaggc ttatcgctaa attttaaact tggattatca
     5641 ggagaaataa gttttttacc ctccacatac acatcaaaaa cttcttttaa attcccattc
     5701 ttatcaaaat gaagcaaata aggaccaaat tcatcaccta tataaaattc atcattgata
     5761 acctgtatac tctcagtatc aaaatcaacc ccacttaaat acctttcttt ggttgtttcg
     5821 gtggttatag gataggggta ttttttatca ctatctttaa aaaaaactgt ttttaaaagt
     5881 tcgtattttg agtttttaaa atcaaattta aactcgtgag cataaagcat ggcatcataa
     5941 gaattatact ttttacccaa gccattatcg ctaattaccc aaaaaacatc tttttttgga
     6001 atatatttta tcccactatg tccttgtata ggttgatttt taaaaggtaa ataaaaatct
     6061 gtttccctgt ttcccttaga tttaaaagtt ccaatttttt cttctctagt gatatttgca
     6121 aatttcccat aagttttaaa aaaatcagga gcatccttag gaggttttac tgtactttta
     6181 gaatctatga taatatgccc tgctaaattg gcctcatact cttgaactcc aaataaaaca
     6241 ctgcaaagca tagcacttgt taaaataacc tttttcatcc aatctccttt atttcatatc
     6301 cactataact ttttcttgcc aaagttgtgg caattcttta gcgctttttt cccaagcttt
     6361 ttgatctttg attgctcttg catttttgta ttgctcactt ggtaaaagtt tagcttttat
     6421 atcatctggc aaggtaatat gatcaattct tattggcctt gcataacctt ttgctagatt
     6481 gatttgtcct ttatcagaaa gtataaactc acgggctaat ttagccgcat ttggatgttt
     6541 tgcgtattta ttgataatag ttgtataacc cgaaataaca ctaccatcag cagggattaa
     6601 aacttcataa cgatctttgc ccactttatc tctatagcct aaaccattaa aatcccaaac
     6661 taaacccact tcaacttcac ctttttcaag attggctata cttacatcat tatttacaag
     6721 tcttccttgt ttggctaaag tattaaaaaa agctaaagca ggacttaaat ctttttcatc
     6781 cccacctaag gcataattag ctgccaaaac tgcactcaca gcttgagccg ctacacttac
     6841 atcacctacg gtaattttat aatttccctt aagcaaatct tgccaagttt taggtatatc
     6901 ttttactaca tctttattga ctataaaagc tatggttcct gtataagcta aaagccaatt
     6961 tccatcttta tctttagccc aagttggaat ttgatcccag taacttgtct taaaaggctg
     7021 agctactcct tgtttaaccg ctatctctcc aaaagacgcc cctacatccc ctatatcacc
     7081 gcttgcattt ttcttttcgg ctttaaattt agcaatttct tgagctgaac tcatatctgt
     7141 atcactatgt tctatgtcat aaagattttt aagatctgcc caagtatcct tccagtttgc
     7201 ccaagtatca ggcatagcta aagaatttac cctaccttct gcttgcgcag ctttaatcaa
     7261 attctcatca atagcttgtg aatttgaaaa caataaagca acaagaccta aacttaagaa
     7321 aaatttctta ctcatttttt tcctttcaaa aaatattttg gaaatttaat gagttttaga
     7381 aacattttag aaacaagtta atttttaagc aaacaaggtt ataattttaa agtcataaac
     7441 aaggagcgat catgctttat atttatatca aaactcaaaa tgctttagtt caaagaatca
     7501 attttaatct cgatagtcaa gaactaccgc aaaatatttt atggattgat ttacttcatc
     7561 caagtgtagc agaaattgct tttatatcaa gtgaatttaa tcttgagttt cctacaaaag
     7621 aagaaaggga agaaatagag cttagcgcaa aatattggga agataatgct accataacta
     7681 tcaatgctca ttttttaatt cgagaattta aaaataatga tgaagagcaa aattcaatca
     7741 agcttcgcac ggaaattgtc acttttgcaa cagctaaaaa tattttattt acgataagat
     7801 ataatgaatt tagtaccttt gaagaaattc aggcaaggat tttagctagt ccgaagaatt
     7861 ttgaagatgg ttttgatatt attgataaaa tgtttgaagt gcgtgttgaa aaagatgcgg
     7921 atttactaga atggatagat aaagaagcaa gacgcttaag aacaagtgtt ttagaaaaaa
     7981 aagatgaata tagttatgat gaaatgctaa aggatatttc aagtttacaa gagcttaata
     8041 tgcgagttag agactctttg tttgataagc gtcgcgctat gacttctttg ctaaaaagcg
     8101 ataaaatcga taaagatata aaacaaaatc tcactatagt tttaaaagac ttaaattctt
     8161 tggttgaatt tagcgtttcg caacttaata tcttagataa tatccaaacc attttagcca
     8221 gccaaatcaa catagaacaa aacaaaatca ttaaaatttt caccgttgca actgttgcca
     8281 tgatgccacc tactttaata ggaactgttt atggtatgaa ttttaaattc atgcccgaac
     8341 ttgaacttca ctatgcttat cccatagtgc ttggcgtgat ggtaatttct atcattttac
     8401 ctttggttgt tttcaagaaa aaaggatggt tataaaaatt tattaaggag aaacaatgga
     8461 tataataaac ataggaattt taaccctaag cgatagagca agtagtggta tatacgaaga
     8521 taaagccact gctgaaattg aaagagtgtt aaattcatat ataaaaaatg atattattta
     8581 tcataaagaa ttaatccctg atgattatga tttgatcatt aaaaaattac tttatctagc
     8641 agatgaaaaa aaatgcgatt tgattgttac aagcggaggt acaggtccag cacttcgtga
     8701 tgtaacccca gaagccacgg aagccgtgtg tgataaaatg atgccaggtt ttggagaact
     8761 tatgcgctta gaaagtttaa aatatgtccc aacagctata ctttcaagac agagtgcagg
     8821 aattcgcaat aaatctttta tcatcaatct acctggcaat cctaaagcca tagcagaatg
     8881 tctagagcct gtatttcctg caatacctta ttgtattgat ttaataggtg gagcttgtat
     8941 agagggaaat gatgaagtaa ttcaagtttt tagacctaag aaaaaatgtc aaaattaaaa
     9001 tttattagcc ctaacaagtc tgcttaattg tctagcaagc agacttgccg aagcttcatc
     9061 tttgcttatc ttttgtactt tatttttaaa cttacaaagc ctgtcatcta aaatcacatc
     9121 attgattgga attttaggct tttctttttg cttttgtgaa atctttttct taaaaaacat
     9181 tctttaatcc ttttttataa atatacacca acttagttga aaagaatatt attttagatt
     9241 ttaaactatt aactttattt cattatttta agctagaatt cgcaaaaaat aaatcaagga
     9301 aaaaataaat gactttaatt gcaattttat gtctttacac agcactttta tcttggattt
     9361 cctatgctca aattcgtttc ttagaaagag aaaaagacaa acaagctcaa attttaagcg
     9421 aaaaagacta tcaaaacgca gccgatattg ctatagaaaa tgaaaaattc aagctttttt
     9481 caaattttta tatgctgatt gttaatatcg catggatagg ttttggattt ctttacttaa
     9541 aagaactatt aatcagcgaa aactctcgcc ttgaaaatac tctattttta cttgcttttt
     9601 taattatcac aagtatttta aatttgcctc taagcattta tgaaagcttt gttaaagata
     9661 aggctcatgg tttttcaaat atgactttaa aactttttat caaagacact ataaaaagcc
     9721 ttattttaac tttgattttt ggatttttaa tcctttatgc cctacttttt tgctatgatt
     9781 tttttggtac tttttggtgg cttgcggcct ttatttttgc tttttgtgtg atagtgatca
     9841 taaatgttat ttatcctact ctaatcgctc ctatatttaa caaaatggaa aaattagaag
     9901 atgaaaattt gctaagtaaa atcaatgatc taatgaaaca atgtggcttt aatgcgaatg
     9961 gggtttatgt gattgatgct agtaaaagag ataagcgttt aaatgcttat tttggtgggc
    10021 tttttaaaag caaaagagtg gtgctttttg acacactttt aaaagcctta agcgaaagag
    10081 agcttctagc agttttaggg cacgaacttg gacattttgt tcacaaagat ataataaaag
    10141 ccctaatcaa tggggcaatc actatgtttt tacttttctt tatttttgcc catttgcctg
    10201 attttgtata tcaagaaagc catctagaag gagttaatgg gggtgttttt gctcttttgt
    10261 ttatatttgc aaatattttt agttttatca tctctccttt aataaatgcc ttaagtagaa
    10321 aaaatgaatt tgcagcagat caacacggag ctaaagttac aagcaaagaa gatatgaaga
    10381 atgcactctt agctctagca agagaaaata aagcttttat taaaacaagc aagatttata
    10441 ccttttttta tcttagtcat ccaagcatta gtgatagaat caaggctctt tcttgaccat
    10501 aaaaaacgct cttatagaag ctaaaactag acttgaaaaa cacgaaaatg aagccttatt
    10561 tatactttgt gaatatctaa aaaaagatag gacttggatt tttttaaatc aagatctaga
    10621 atttgattcc aagccctatt ttgaacttat caaacgcttt caatcagggg aaccttttga
    10681 atacatcttt gaaaaagcag atttttgggg cttggaattt aaagtaaaaa aaggggtttt
    10741 aatcccacgc tatgatagcg aaattttact ttcacaagtt cttaaaattt gcaaaaataa
    10801 taattttcaa aatatattag aaataggctt tggaagcgga attttaagta tagttttagc
    10861 taaagaattg ggaataaaaa ttacagcttg tgatatcaac cccaaagctt tacaattagc
    10921 cttagaaaat gctaaattac acaaagttga acatttaatc gactttaaac tttgtgattt
    10981 taaacaaata aaagaaaatt atgattttat tttttcaaat cctccctata tccaaaattc
    11041 ataccccata gatctttggg tacaaaacga accaaaagaa gccctatttg gaggagaaaa
    11101 aggatatgaa attttagaag aaattataac tttctccttt gaaagaaagg ttaaattttt
    11161 agcatgcgaa tttggctatg atcaaaaagt aattttaaaa caaattttat atcaaaaaaa
    11221 ttttcaagct gaattttttc aagatgaaca aggatatgat cgtgcttttg tcgctcaatt
    11281 tgctaaaaaa taagctttgt atgatatgat aagttaaaaa attaaggaga aaaattgaaa
    11341 gcaatcaatc tatttttact tgcagctatg attggcatag agcttatact tggcatagtt
    11401 gttgcaccag taatttttta cccagctaac cttataggcg agggagtttt aagtcatttt
    11461 caaagtggct taatgatgac tcaaattttc attaaaatgg gatatttgtt aatttttgtt
    11521 tctattatta atttattatt tgaaatctat tcttttgcaa aagaagatat gaaatttcag
    11581 attaaattct caaaattaat gcttgctata ctcattttaa ttttgagctt agtgtttgtt
    11641 ttgtatttta caaataccat tattaaactt caaaatttgg gcgaacaagc tacaaaaagc
    11701 caagaatttc ttagtataca taatgcaagc gaagtggtta taaaaattat tttattaatg
    11761 caagtttttc tatatttctt aagctttaaa atagcaaaaa aatgctaaaa tccaataaaa
    11821 atttataagg aggagtaggc tatgatgatc tctgatgcaa gcatgatgca acaaaattat
    11881 tatttaaata atgctcaaaa agctagtgaa aaagctttag aaaacattgc agctgtccgt
    11941 gcgataagtg ggattgatag tgctaattta gctattgctg attctttaag atctcaatca
    12001 agcactatag atcaaggtgt cgcaaatgcc tatgatgcta ttggtgtttt acaaattgca
    12061 gatgcaagcc tgacaaatat ttctcaaagt gctgatagac ttaatgaact ctccgtaaag
    12121 atgaataatg cagcattaag tgattctcaa aaaagcatgc taagaacaga agcaacacgc
    12181 atacaagagt ccatcaatga ttcttttaat aatgctacct ataatggaaa aaatgtattc
    12241 caaactatga attttgtagt aggaagtgga actgaaacga ccaatttaaa tccattgaca
    12301 actagtggtc ttagcataga taatcaagac aatattacaa attttatgga tcaacttggt
    12361 gctttaagaa gtgaaatagg atcgggtatc aatgccatca cttctaatat caatgctagt
    12421 gtgcaaaata gcatcaatac taaagcagct gaaaataatt tgctgaataa tgatatggca
    12481 aaaaacgtca atgattttaa tagcaattac ctaaaagaaa atgcagctgc tttcgtcgct
    12541 gcacaatcta acatgcaact tcaaagcaaa attgctagct tattacaatg ataaaagccc
    12601 taatctaggg cttctctttt tataaaaatg actttagaac aaattttaga aaaaaccaaa
    12661 aatatccgtc ttgtggcagc aagcaaatat gttgatgcaa atattatcga aaaacttttt
    12721 actcaaggaa ttacagaatt tggagaaaat caagttcaag ccctagtaca aaaaaaagaa
    12781 attcttgata aaaaagattt aaatataaaa tggcatttta taggaacgct acaaagcaat
    12841 aaaatcaatc ttttaatcaa gcaaaaacca atactctggc attcttgtaa tggattaaaa
    12901 atagcaaaag ccatggataa aagactaaat tataaactag ataccttact agaaatcaat
    12961 agtgccaatg aactcagcaa aagcggactt aatccggatc aagctataga agaatattta
    13021 caaattcaag aagaatgtcc taatttaaat ctttgtggag ttatgagcat aggttcacac
    13081 agcaaagatc aaagagaaat tgaaaaaagt tttgaaacaa cctataaaat ctatgaaaaa
    13141 cttcaaaaac acggagctaa aatttgctcc atggggatga gtaatgactt tgaaatcgcc
    13201 attaagtgtg gatctaatat ggtaaggctt ggaagtattt tatttaaaaa tttaaaataa
    13261 aatctcccct aatcctttac cctgcatatt tattgataat tttttcacta acactatcag
    13321 aaataacaaa atcagtatga taaagcaagc aagaaccagt gctaacgatc tttaagacaa
    13381 gctttttatt gcctttttca tttggattat gtgcacttct tgctatttcg tgaatttcat
    13441 aaacaagctc tcgatttaat cttgaaagat caagttctat aatattgttt tcaaattctt
    13501 taggctctgc tataaaatct ttattttctt gagtattttt cttggcgtta aattttttta
    13561 ccgccttaat ctctccttct tgaagctcct ctagagtttt aattgatctt aaagccaagc
    13621 tatctaattt gccctcctct gctttatagc ttaataaaaa tccataagcc tcatttttag
    13681 aggcttcatt ttttaaaata ttttcaatct cttctatatt agactcaaaa accgtcactt
    13741 caaaagtaga ataaaaatcc aatatctcaa gcctgccata acgcttatta tttttactca
    13801 tcatagattt aaagctttca atctttccta tacttaaaat ttctccactg cctttaagtg
    13861 ttgaaaaatc tatacttttt acataatcta tttccttaaa tttatcataa aaacgatcga
    13921 gtgggtgtcc tgaaacataa attcccaaaa tctctttttc aaattcaagt ttttccataa
    13981 cctcaaattc ttcattctta gccactatat taacttgcaa accaacagtt aattcatctt
    14041 ctccaaaaag agaacttgct gcattttttc ttgcatcggc cattttttta gagccttcgg
    14101 ttaaattgtc catattatca aacaagcact ttctcgtata gccaaattca tcaaaagcac
    14161 ccgctttgat aagactttct agggttcttt tgttgatctt tgtaggctct atcctgctta
    14221 aaaaatcatc aatattttta aattcgcctc gctctcttgc ttcgagtaaa ttttcaactg
    14281 caggaattcc cacactttta atagctccaa gtccataaac aatagcatct ttaccatctt
    14341 cttgctctac tgcactaaat tcgcgtatgg ctttattaac agaaggtgga agaagtttga
    14401 tattcatttt tttcatttca tcgatataaa cagcgatttt atcgacatta ttttcttcac
    14461 ttgttagcaa tgctgccata aattcactag gatagtaggt ttttaagtac gctgtttgaa
    14521 aagtgatcaa ggcataagcc gcagagtgag atttgttaaa accatatcct gcaaatttaa
    14581 caatcaattc ccaaagctct tcggctttta ctctatcata accctgcttt tcagcaccat
    14641 cagcaaattc actttttaat tttttcattt tttcaggatc ttttttaccc atagcgcggc
    14701 gcaccacatc agcaccacct agtgaaaatc ctcctataat ctgaacaatt tgcataactt
    14761 gctcttgata gacaataacc ccgtatgtag gctctaatac actttcaaga gtatcaaatg
    14821 gatattctat ctttttaagc ccatgtttcc tatctataaa atcatcaagc attcctgatt
    14881 ccataggacc tgggcgataa agagcaagaa ccgcgataat atcttcaaaa cgctcaggct
    14941 ttaatcttgc atttaagttt tgcattccgc ctgattctat ttgaaatatt cctaaggtat
    15001 tcccattctg tatggtttta taaactttag catcgtttac atcgatagct tcccagacta
    15061 tgtctttatt gtaacgcttt ttaatgagtt taatagcatt gttgatcaaa gttaa
//
LOCUS       DARAII010000033        15055 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.033, whole genome shotgun sequence.
ACCESSION   DARAII010000033 DARAII010000000
VERSION     DARAII010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15055)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15055)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15055
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.033"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1035
                     /locus_tag="SB143_000837"
     CDS             <1..1035
                     /locus_tag="SB143_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEF9749388.1"
                     /translation="LTILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGI
                     TASPVSAAVVYMSGVLEPLGWNYPTLIGIWISTTFIACMLTAFIVSLITPMDLSKDSV
                     YQERLKAGLVKDAGAILHGEDKPGAKLSVGIFLITVLAVVLYATAISSNIKWIDPVVV
                     PRDAAIMSFLLTAATLITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGH
                     EASIKEVAGDWVKQTPAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDS
                     YMLVACFAAVSALFVLPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFVPGVLAIAIAVA
                     LGFVIAPMLM"
     gene            1105..2457
                     /locus_tag="SB143_000838"
     CDS             1105..2457
                     /locus_tag="SB143_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749389.1"
                     /translation="MKYKTIVFSILAIIFSACSTHQEQNVFYQQNLFSQTCNKQFFQE
                     QQEKNSQNKDVIFTGLNTGYIARDCKDFNLSNSIFDKVEDSYKYDVDLQSLSKKSTRA
                     LASTLINEGVNDYQGAWYERTMLNVYKGLNFMSLGDFVNARVEFNRALMRQEKAKEYF
                     ASEIKKAYQEASKEEKLRQNIDNNIKIVSKQYENLFKDFNAQKDYTNPYVTYISSIFF
                     FMDYDYKKAADLLKEVYVLNLNKEIEKEFKIFDQYSSSLNPKKLKKYIFIIYENGLSP
                     ALDEFNLTLPFIFDDYITTASVALPILKKRNASYENLNIANNHQKFTTSNAFDFDQIV
                     ASEFKANLTSIIIKSLISSTLKTSLNMAVAKNDESGILSLATNIFSIATTRSDLRFWN
                     FLPKNIQIMMIENDGSVQIYDDKNQKIYSSEVDIDKNVLIVVRSFASQFPARVYKIEN
                     "
     gene            2488..3111
                     /gene="lpoB"
                     /locus_tag="SB143_000839"
     CDS             2488..3111
                     /gene="lpoB"
                     /locus_tag="SB143_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEF9749390.1"
                     /translation="MKKNIFIIFSAFFAVFFAACGAPVYTDGYASQKKQGDALTLGLD
                     REDFEKTAQIMIDSMLSDPAFANIQPGQRKVIAIGKIINDTPQRIDTDKLISKITIAL
                     RKSGKFVLTTAVAAGGARDEMSEAVRELRDNDEFNQNTISSKGTLVAPDFSISGKIRQ
                     DNVKLKNGDIQAEYFFYLSVTDLNSGLAYWEDERTIDKTGSSKSVTW"
     gene            3111..4097
                     /locus_tag="SB143_000840"
     CDS             3111..4097
                     /locus_tag="SB143_000840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749391.1"
                     /translation="MKKIFLFLTILSFMWAQDDVIIYDYVSLEDVNLSSLDPVQSLKT
                     LPHQRNKFQKVVQGNGTGESKEEALNNALIDALSQFKGVSNVNLRQELQSIDLSFSHL
                     GQISQKSKSVLQNVSKGYIDTYKVDKIDQNGTLWQVEISAFKSLYQNDNKPKLVILND
                     KNKEESYLKRALYDAFSQDENFTLLEREHDFKDENKIIKSEDGSSEESYKLGNVLGAD
                     YILEFEILDITQAKQSKISYQNNTKVSINIAYKLIFYPTRELVFSKTFNTTFTLSGDS
                     KKEQKNWENIALFMQREMEKSLFFDTLEEDNKQEGKENTYKLHENGGVNLGF"
     gene            4254..4562
                     /gene="rplU"
                     /locus_tag="SB143_000841"
     CDS             4254..4562
                     /gene="rplU"
                     /locus_tag="SB143_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEF9749392.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            4573..4827
                     /gene="rpmA"
                     /locus_tag="SB143_000842"
     CDS             4573..4827
                     /gene="rpmA"
                     /locus_tag="SB143_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEF9749393.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGIGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            4932..5978
                     /gene="obgE"
                     /locus_tag="SB143_000843"
     CDS             4932..5978
                     /gene="obgE"
                     /locus_tag="SB143_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEF9749394.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     VLLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVDEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMREMPLKEQFIVLRKELEKFSNELFGREFG
                     IMISKSDSVNLGEDFAEQIAQNIANLEEYLKSIDNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKKLREKREKR"
     gene            complement(6030..6533)
                     /gene="traF"
                     /locus_tag="SB143_000844"
     CDS             complement(6030..6533)
                     /gene="traF"
                     /locus_tag="SB143_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEF9749395.1"
                     /translation="MANFRIQTYLFALIVALFFIACDSGENFKALNSNKIYNFSYNGF
                     EKSLKLDDQTQNFALVFFTKDCGVCKEQIPILQDLAKNYDFNIFIVLGDAKDAKDAKA
                     WADEKGLSHLALFYEKKAAKYLSGAVGEIYGVPVLSFFKEGKIDEKFIGLTPYGVLEN
                     EIKKLKI"
     gene            complement(6494..6982)
                     /locus_tag="SB143_000845"
     CDS             complement(6494..6982)
                     /locus_tag="SB143_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEF9749396.1"
                     /translation="MKKVFLFFISLFLLNACSFDTNQDQGKIGQIGAEISAKDTLGKA
                     VKLADDKSNIKVLVFFQNGCPSCLQELPSLDKFMQEHPNKISVYAINSVDKVEVVQVL
                     AEQLNFKNIKVLTDDLKITNDRYAVFATPTTIILKDGIIKERILGEKPWQTFESKLIS
                     LL"
     gene            complement(6979..7626)
                     /locus_tag="SB143_000846"
     CDS             complement(6979..7626)
                     /locus_tag="SB143_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749397.1"
                     /translation="MKELIQIKNLSKKFGKVKALDNINLNIYKGEWLAIMGPSGSGKS
                     TLLNILSLMDDPSSGKYILDNEDLEQINEEQKITLRREKIGLIFQQFHLIPYLSALEN
                     VMLSQYYHSSVDEEDAKAVLEKVGLSHRLSHLPSQLSGGEQQRVCIARALINNPEILL
                     ADEPTGNLDEANEKIVLETLQKLKNEGKTIVLITHNPELAKFADRTLILQHGILK"
     gene            complement(7626..8744)
                     /locus_tag="SB143_000847"
     CDS             complement(7626..8744)
                     /locus_tag="SB143_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEF9749398.1"
                     /translation="MVDKFFLNELFKSIAFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDTKLSKELKAYGANVIIEPKNDKELILNQDYEEAKKNLKARALTPFLYTFLNLGSTS
                     GVVLGTDFRALKITKPFIEVKEGSFSLSDFDENSAFLGINLSKQLGLKVGNELQIYNP
                     ENGKTTKLTIKGILLSNDELDSIVLAPLSVVQNLSDTFGIQYANAVVYGNFDEINTKT
                     KNISNESINAKPISSVSLSEGLVLDKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFACEYFIISLFASIIGAFCGIFLANIFGYLIFNASIDFR
                     FKAIFMALIVSLFFAFLAAFFPIKKALKINVCENLKGE"
     gene            complement(8734..10032)
                     /locus_tag="SB143_000848"
     CDS             complement(8734..10032)
                     /locus_tag="SB143_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749399.1"
                     /translation="MMLVKMITHSIFRNKIQKFLAFLTCFLATLLLCTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMLKDIYWRNNIT
                     AFAPFLEGKIEIKSNNSSKKILLYGTYFQKAIEIKDDDDFITGIKSLYPYLKVQGKWA
                     KDDSNEIMLGEDFAKNNDLKINDTIQLIGENKISKEVKIVGILLHANPKMSNKIITPL
                     NLAQELLEKKGLYASAEVRAFTIPESALSEKVRRMGEEKLDQIEYDKWYCSAYVGSIA
                     SQISDGLPGADAKALNAISDAQSLVVKKIQSLMAITCIICLIVASIAISSLMSSEIHR
                     RKKEIGLLKVLGANTFQIYLLFAGENLIIALVSAVFGFIFGIGLSELISLGIFGYFIN
                     IAFIALPLSLVFAGLIAILGCLLPIKNIANLSPAGVLYGR"
     gene            complement(10019..11422)
                     /locus_tag="SB143_000849"
     CDS             complement(10019..11422)
                     /locus_tag="SB143_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEF9749400.1"
                     /translation="MSIYFVHFLSSILPLSILMAFITPDKRYIFKSFLALFLGFLFGY
                     FAFFIAAQFLKTENLIFNFNFIFIACLLLSFVFYFWQKIEILSFILLGILSFCIALHY
                     YNLTQDFPIFNGVLIDSEAISSLGFIALALLICILIFFFLKWQKNINKKASFILFLIL
                     IFIEGDKVLANILLTLMRNSFIETHTFLVSFVGKSNYFGVFGIYVYLFFIIFLAFLSL
                     QIRKKNIVKKQILDIVYRKNEAKNTLINRYFSSVFISCILSFCIILYFFMVSSKPLSI
                     DEPTELLPDKNGKFIFDVALLRDNKLHRFAYISEQGKVIRFFLINKREDRDSPVAVFD
                     ACAICGDMGYIKKEGELICISCNVRIFLPSVGKTGGCNPIPLKYDYDGEKITIDVKDV
                     VAGSNYFSQIKDIQVQDPVSKDKIINTQAPFSYSYKGITYYFSNEKNYEEFKKDPMKY
                     VEDTEALFLIQRRNNAS"
     gene            complement(11504..12043)
                     /locus_tag="SB143_000850"
     CDS             complement(11504..12043)
                     /locus_tag="SB143_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEF9749401.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            complement(12040..14109)
                     /locus_tag="SB143_000851"
     CDS             complement(12040..14109)
                     /locus_tag="SB143_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEF9749402.1"
                     /translation="MKFFKILFFLSMLFLANSVFARVDDYVAEANTIKNILEESIKSY
                     EKGDNLKAKKLSEDAYFQHFENMEGPIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLQAEASDTNYDKAAAEKSSIQANAKREAEAEALIA
                     QMMGIDKNDLAKTNSSSSTQNETINDSINNDLQAAAAMDARLQFILDNISTKFSQAAN
                     AFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKVGNDQKIQQAIRTLIRQINDAK
                     IDEKGLRDGLDSIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSNDIKLALD
                     EILKNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSKGVALIKA
                     SADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALIIVVAIVSY
                     LVQSGNKNRLNIAYSALFTGVILSFITAFGVSWLFKENAGQSRELIEGITMLIAVLLL
                     FYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAETVLFYQAL
                     LFDAKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYIIFYMVFVF
                     TGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIGILITKQI
                     SKKGVKS"
     gene            14287..14469
                     /locus_tag="SB143_000852"
     CDS             14287..14469
                     /locus_tag="SB143_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEF9749403.1"
                     /translation="MISDATMSNANLLTAVNTSVLKKSMDTNEVLMNELIKGMESASG
                     ASALQTSSSSGLDIYA"
     gene            14595..>15055
                     /locus_tag="SB143_000853"
     CDS             14595..>15055
                     /locus_tag="SB143_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEF9749404.1"
                     /translation="MQAVKKIILSETFPGILLIFFTLLALLFKNSSLSVIYTDFFHAN
                     FTIGFDHFQIAKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRSVSLPIFGALG
                     GMIVPALIFSAINYSHEFAMKGWAIPTATDIAFAVGILMLLGNRIPSSLKL"
BASE COUNT         5216 a         2297 c         2413 g         5129 t
ORIGIN      
        1 cttactatct tagcaggaac aggaaatgca gtattttctt taatgcctgt tgtagttgat
       61 gttgcaaaat ctcaaaatat aaaacctagt gttccacttt cattaatggt tgtttcttcg
      121 caaattggaa tcactgcttc tcctgtgagt gcagctgtgg tttatatgag cggggtttta
      181 gaaccactag gatggaatta tccaacttta attggaattt ggatcagtac aacttttata
      241 gcttgtatgc ttacagcttt tatagtgagt ttaatcactc ctatggattt aagcaaagat
      301 agcgtttatc aagaacgctt aaaagcagga cttgttaaag atgcaggagc tattttacat
      361 ggtgaagata aaccaggtgc taaactttca gtaggaattt ttttgatcac tgttttggca
      421 gttgtacttt atgcaaccgc aatttcaagc aatattaaat ggattgatcc tgttgtggtt
      481 ccaagagatg cagctattat gagcttttta cttactgcag caactttgat cacttggctt
      541 tgtaaagttg aaccaggtaa aattcttgat accagtgtat ttaaaagtgg tatgactgct
      601 tgtgtttgcg tttttggtgt agcatggctt ggaaatactt ttgttgcagg acacgaagct
      661 tctattaaag aagtagcagg cgactgggtt aaacaaaccc ctgctatgtt agcagttgca
      721 tttttctttg caagcatgct tttatattct caagcagcaa ccgcaaaggc cattgtacct
      781 gtaattatca ccgctttagg aatttcagca gcaaatccgc atgattctta tatgcttgta
      841 gcttgttttg cagcagtttc ggcacttttt gtgcttccaa cttatccaac cttacttggt
      901 gctgtgcaaa tggatgatac aggaacgact agaattggta aatttatatt taatcactct
      961 ttctttgtac caggagtttt agctattgca attgctgtag ctttaggctt tgtaatcgct
     1021 cctatgttaa tgtaatagcc cttttttggg ctattatcaa ttttatgata tattaaaatt
     1081 ataattttta tttttggaat tataatgaaa tataaaacaa ttgttttttc tattttagcg
     1141 ataatttttt cagcatgctc tactcatcaa gaacaaaatg tattctatca acaaaattta
     1201 ttctctcaaa cttgcaataa gcaatttttt caagagcaac aagaaaagaa cagtcaaaat
     1261 aaagatgtga tttttacagg tttaaataca ggttatatcg caagagattg taaggatttt
     1321 aacttaagta attctatttt tgataaggtt gaagattctt ataaatacga tgtggatttg
     1381 caaagtttat ccaagaaaag cacaagagca cttgcatcta ctttgataaa tgagggtgta
     1441 aatgattatc aaggtgcttg gtatgaaaga accatgctta atgtttataa gggtttaaat
     1501 tttatgagtt tgggagattt tgttaatgct agggtggaat ttaaccgcgc attgatgaga
     1561 caagaaaagg caaaagagta ttttgcttcc gaaattaaaa aagcatatca agaggctagc
     1621 aaggaagaaa aattaaggca aaatatcgat aataatataa aaattgtttc aaaacaatat
     1681 gaaaatcttt ttaaagactt taatgcacaa aaagattata ccaatcctta tgtaacttat
     1741 atttcatcta tatttttctt tatggattat gattataaaa aagcagcgga tttacttaaa
     1801 gaagtttatg tgctgaattt aaataaagaa atagaaaaag aatttaagat ttttgatcaa
     1861 tattcaagca gtttaaatcc aaaaaaatta aaaaaatata tttttataat atatgaaaat
     1921 ggattaagtc ctgctttgga tgaatttaat ctaaccttgc catttatctt tgatgattat
     1981 attacgactg ctagtgttgc tttacctatt ttaaaaaagc gtaatgcttc ttatgaaaat
     2041 ttaaatattg caaacaatca tcagaaattt acaacttcta atgcttttga ttttgatcaa
     2101 attgttgcga gtgaatttaa agccaatttg acttcaatca tcatcaaatc tttaatctca
     2161 agcactttaa aaacaagttt aaatatggct gtggctaaaa atgatgagag tggaatttta
     2221 agtcttgcta caaatatttt tagcattgca accacaagaa gtgatttaag attttggaat
     2281 tttttaccta aaaatataca aattatgatg attgaaaatg atggatcggt acaaatttat
     2341 gatgataaaa atcaaaaaat ttattctagt gaagtggata ttgataaaaa tgtattgatt
     2401 gtagtgcgtt cttttgcttc tcaatttccc gctagggttt acaaaattga aaactaaaag
     2461 agtataatta caaaaaaagg agaaataatg aaaaaaaata tttttataat ctttagcgca
     2521 tttttcgcag tattttttgc agcttgtgga gcgcctgttt atactgatgg ttatgcaagt
     2581 caaaaaaaac aaggtgatgc tttaacctta ggacttgata gggaagattt tgaaaaaact
     2641 gctcaaatta tgatagatag tatgttaagc gatcctgctt ttgccaatat tcaaccaggt
     2701 caaagaaagg ttattgctat aggtaaaatt atcaatgata ctccccaacg cattgataca
     2761 gataagctca ttagtaagat cactatagcg cttagaaaat caggtaaatt tgtcctaaca
     2821 acagctgttg cagcgggtgg agctagggat gaaatgagtg aagcagtaag agaattaaga
     2881 gataatgatg aatttaatca aaacaccatt tctagcaaag gaactttggt tgcacctgat
     2941 ttttcaatca gcggaaagat ccgccaagac aatgtcaagc ttaagaatgg cgatatacaa
     3001 gcagagtatt tcttttatct aagcgttacg gatttaaatt caggacttgc ttattgggaa
     3061 gatgaaagaa cgattgataa aacaggctca agtaaatcgg taacttggta atgaaaaaaa
     3121 tctttttatt tttaaccatc ttgagtttta tgtgggcgca agatgatgtt attatttatg
     3181 attatgtttc gctagaggat gttaatttaa gttctttaga tcctgttcag agtcttaaaa
     3241 ccttgccaca ccaaagaaat aaatttcaaa aagtggtgca aggtaatgga acaggagaaa
     3301 gcaaggaaga agctttaaat aatgctttaa tagacgcttt atcacaattt aaaggagttt
     3361 ctaatgtcaa tttaagacaa gagcttcaaa gtattgattt aagcttctct catttaggac
     3421 aaatttcaca aaaatctaaa agtgtccttc aaaatgtaag taagggttat atcgatactt
     3481 ataaagtaga taaaattgat caaaacggaa cgctttggca agttgaaatt tcagctttta
     3541 aatctttgta tcaaaacgat aataaaccta aattagtaat tttaaacgat aaaaacaaag
     3601 aagaatcata tttaaaaaga gctttgtatg atgctttttc acaggatgag aattttactc
     3661 ttttggaaag agagcatgat tttaaagatg aaaataaaat tataaaaagc gaagatggtt
     3721 ctagcgaaga aagctataaa ttaggcaatg ttttgggtgc tgattatatt ttagaatttg
     3781 agattttaga tattactcaa gcaaaacaaa gtaagataag ctatcaaaat aatacaaaag
     3841 taagtataaa tatagcctat aagcttatat tttatcctac aagagagctt gttttttcta
     3901 aaaccttcaa tacaactttt actttatctg gcgacagcaa aaaagagcaa aaaaattggg
     3961 aaaacattgc gttatttatg caaagagaaa tggaaaaatc attatttttt gatactttag
     4021 aagaagataa caaacaagaa gggaaagaaa atacttataa acttcatgaa aatggcgggg
     4081 tcaatcttgg cttttaaatt gctttagggt ttattttaaa ctctaaagtc tttcttaaat
     4141 tcatcaaata ttaaagaaaa tttttgtaaa attaaaactt ttctagccat taaagctttt
     4201 aaatccgaat ttcggtgctt tgtggtactt accaaattat taaggaaaaa gcaatgtatg
     4261 ctattattaa acacagcgga aagcagtata aagttagcgt tggcgatgag ttaaagctag
     4321 atcactttga agctgaaagc aaagcaagta ttgaagtaag tgaagttctt gctatcaatg
     4381 ataaagaatt aaaggtaggt gcgcctttcg tagcaggtgc aaaagttgtt ttggaagtga
     4441 ttaatcacgg aaaagataaa aaagttgtga tttataaaaa aagacgcaga aaagattcta
     4501 aacttaaacg cggttttaga agacaattca ctcgcgttgt agtaaaagat attaaagctt
     4561 aaggagtaaa gaatggcaca caagaaaggt cagggttcaa ctcaaaataa ccgcgattct
     4621 ataggtcgtc gcttaggtgt taaaaaattt ggtggtgaat ttgttagagc aggaaatatc
     4681 attattcgcc aaagaggaac tgcaactcat gcaggaaata atgtaggcat aggaaaagat
     4741 cacactatct ttgctttaat tgatggtttt gtgaaatttg aaagaaaaga caaagacaga
     4801 aaaaaagttt ctgtatatcc tgcataagtt tttagggcgt ttttacgcct tagaaacttt
     4861 aaatttataa atttaacttc tataatttat tctaatttag ctttataaat ttaaaatcaa
     4921 aggcaattat aatgtttatt gatagtgtta agattacttt agcttcgggc gatggtggca
     4981 aaggcgcggt gagttttcgt cgtgaaaagc atgttcctct tggcgggcct gatggtggcg
     5041 atggaggaaa tggcggggat atcatcttcg tttgcgataa taatacacat acacttgtaa
     5101 attttaaagg taaaagagag cttcgcgcgc aaaatggcgc aggtggaatg ggacgcaaca
     5161 aaaatggaaa aaagggtgaa aatttagaac ttattgtccc tgagggaacg caagttattg
     5221 atgcgcagac taatgaagtt ttattagatc ttacaaaaga ggggcaaaga gaactttttc
     5281 taaaaggtgg caaaggaggg cttggaaata cgcattttaa acatgcaacc aatcagcgcc
     5341 ctgattatgc acagccaggc attaaaggcg aaagtcgttt agtaagactt gagcttaagc
     5401 ttatcgccga tgtaggactt gtaggctttc caaatgtggg aaaatccacc cttataagtg
     5461 tagtttcaaa tgcaaagcct gaaatcgcaa attatgaatt taccacgctc acaccaaaac
     5521 tagggcttgt agatgtggat gagtataatt cttttgtgat ggctgatatt ccagggatta
     5581 tcgaaggtgc aagtgggggc aaaggcttag ggcttgcatt tttaaaacat atagaaagga
     5641 ctagcttttt actttttgta ctagatccta tgagagaaat gcctttaaaa gagcaattta
     5701 tagtgttaag aaaagagctt gagaaatttt caaatgagct ttttggacgt gagtttggca
     5761 taatgatttc aaaaagtgat agtgtgaatt tgggtgaaga ttttgccgag cagatcgccc
     5821 aaaatatagc gaatttagaa gaatatttaa aaagtattga taatccacaa agctttttaa
     5881 tcaaagtatc aagccttgaa aaaactggac ttaaagagct taaatttatg cttttagaag
     5941 agattaaaaa attaagagaa aagcgtgaaa aaaggtgata aaataatcac ctcgagatat
     6001 tttaattata atcttgattt atagcaaaat taaattttta actttttaat ctcattttca
     6061 agcacaccat aaggcgttaa gcctatgaat ttttcatcta tcttgccttc tttaaaaaag
     6121 ctaagtacag gtactccgta tatttctcca actgcacctg agagatattt ggctgctttt
     6181 ttttcataaa ataaagccag atgcgacaaa cccttttcat ctgcccaagc tttagcatcc
     6241 tttgcatctt tagcatcgcc tagtactata aaaatattaa aatcataatt tttagctaaa
     6301 tcttgcaaaa taggaatttg ctctttacaa accccacaat ctttagtaaa aaatactaat
     6361 gcaaaatttt gtgtttgatc gtctaatttt aaactttttt caaaaccatt ataagagaaa
     6421 ttataaattt tattgctatt taaagcttta aaattttctc cactatcgca agctataaaa
     6481 aataaagcta caattaaagc aaagagataa gtttggattc gaaagtttgc catggttttt
     6541 ctcctaaaat tctttctttt ataatcccat ctttaagtat gatggtggtt ggagttgcaa
     6601 atacagcgta gcgatcattg gtgattttaa gatcatcggt taaaactttg atatttttaa
     6661 aatttaattg ttcggccaaa acctgaacga cttcaacttt atctaccgaa tttatagcat
     6721 aaacgctgat tttatttggg tgttcttgca taaatttatc caaagaaggc agctcttgca
     6781 aacaagaagg acatccattt tgaaagaaaa ctaagacttt tatattgctt ttatcatcag
     6841 ctaatttaac agcctttcct aaagtatctt tggctgaaat ttcagctcct atttggccaa
     6901 ttttaccttg gtcttgattt gtgtcaaaag agcaggcatt gagcaaaaaa agacttatga
     6961 aaaataaaaa tacttttttc attttaaaat tccatgttgc aagataaggg tgcgatctgc
     7021 aaattttgct aattcgggat tgtgtgtgat caagactatg gttttaccct cattttttaa
     7081 tttttgcaag gtttcaagaa cgattttttc attggcttca tccaaattcc ctgtaggctc
     7141 gtcagcaagt aaaatttcag gattgttaat caatgctctt gctatacaaa ctctttgttg
     7201 ctctccaccg cttagttggc ttggtaaatg gctaaggcga tgtgaaagcc ctactttttc
     7261 aagtacagct tttgcatcct cttcatctac gctagaatga tagtattgcg aaagcataac
     7321 attttctaag gcactaagat aaggaatgag atgaaattgc tgaaaaataa gcccgatttt
     7381 ttctcggcgc aaagtgattt tttgctcttc atttatttgt tctaaatctt cattatctaa
     7441 aatgtattta ccactgcttg gatcatccat aagagataat atatttaaaa gcgttgattt
     7501 tccacttcca gaaggaccca tgatggcaag ccattctcct ttgtaaatat ttaaatttat
     7561 attatccagt gcttttactt taccaaattt tttgcttaaa tttttaattt gtataagttc
     7621 tttcattatt cacctttcaa attttcacag acattgattt ttaatgcttt ttttatagga
     7681 aaaaaggcag ctaaaaaagc aaaaaacaaa gaaacaatta aagccataaa tatagcctta
     7741 aatctaaaat ctatacttgc attaaaaatc aaatatccaa atatatttgc taaaaatatc
     7801 ccacaaaaag ctcctataat gctagcaaaa agactaatga taaaatattc acaagcaaaa
     7861 agtttgaaaa tttcactttt tttagcaccc aaggctaaac gcaaggcaat ttctttttta
     7921 cgcgaaaata taatcgagct tagagtggtg tttacacttg ttgtgactat gattaagaca
     7981 acaagtatga ttaaaaacat taaagctttt attttgtcta aaactaggcc ttcgcttaaa
     8041 gatactgatg aaataggttt tgcattaatg ctttcattgc taatattttt tgtttttgta
     8101 tttatctcat caaaattccc ataaacaacc gcattagcat actgaattcc aaaggtatcg
     8161 cttaaatttt gtactacgct taaaggcgct aaaactatgc tgtctaattc atcattactt
     8221 aagagtatgc cttttatcgt aagcttggta gttttgccat tttctgggtt gtaaatttga
     8281 agttcattgc ctactttaag tcctagttgt ttggataaat taatacccaa aaaagctgaa
     8341 ttttcatcaa aatcacttag agaaaagctc ccttctttaa cttctataaa aggcttagtt
     8401 atctttaagg ctctaaaatc tgtacccaaa actactccac tagtgctacc caaatttaaa
     8461 aatgtataca aaaaaggagt taaggctcta gcttttaaat tcttttttgc ttcttcatag
     8521 tcttgattta agataagttc tttatcattt ttaggctcga tgataacatt tgctccataa
     8581 gcttttaatt ctttagaaag ctttgtatca atatcaaaat aaatatttaa aaaagccgag
     8641 caagttagtg ctcctataaa aacacttaag acaataataa aaagtctttg ataagaaaaa
     8701 gcaatgcttt taaaaagctc atttaaaaaa aacttatcta ccataaagaa ctcctgcggg
     8761 agaaagattt gcaatatttt ttataggaag caagcatcca agtatagcta tcaaacctgc
     8821 aaatacaaga cttaaaggca aggctataaa agcaatgttt ataaaatatc caaaaattcc
     8881 aaggctgata agctctgaaa gtcctatgcc aaaaataaat ccaaatacag cagaaactaa
     8941 agctatgatc aaattttcac ctgcaaaaag taagtaaatt tgaaatgtat ttgcccccag
     9001 tacttttaaa agccctattt ctttttttct gcggtgaatt tcagaactca ttaaacttga
     9061 tatagcaata cttgcaacaa taagacaaat aatacaagta atagccatca aagactgaat
     9121 ttttttaaca accaaacttt gtgcatcgct tatggcattg agtgcttttg catccgctcc
     9181 tggcaagcca tcgctaattt gactagcaat tgatcctaca taagctgagc aataccattt
     9241 atcgtattct atttgatcga gtttttcctc gcccattcgg cgtacctttt cagaaagggc
     9301 tgattcaggt atggtaaaag ctcttacttc agcacttgca tataagcctt ttttttctaa
     9361 taattcttga gctaaattta aaggagtgat gattttgttt gacattttag gattggcgtg
     9421 gagtaaaatt cctacaattt ttacttcttt tgaaatttta ttctctccta tgagttgtat
     9481 cgtgtcattg attttaagat cgttattttt agcaaaatct tcgcctagca tgatttcatt
     9541 gctgtcatct ttagcccatt tgccttgcac tttcaaataa ggataaagac ttttaatacc
     9601 tgtgataaaa tcatcatcat cttttatttc aatcgctttt tgaaaataag taccataaag
     9661 gagtattttt tttgaggaat tattgctttt tatttctatc tttccttcta aaaaaggagc
     9721 aaaggctgtg atattgtttc gccaataaat atcttttagc atatataaat ttttttcttc
     9781 taaatagttt ttatttttta aaggttcgta aagctcattg cctatttcta tgctaaggct
     9841 tgagccttta ggcaaaacca gtatattaga tccataactt ttaagttgct tagttacttc
     9901 atcgcctata cttagagtga tatttaacat tgtacatagc aaaagcgtag ccaaaaaaca
     9961 agtaagaaaa gctagaaatt tttgaatttt atttctaaag atagaatgag ttatcatttt
    10021 aactagcatt atttctcctt tggattaaaa ataaagcttc tgtatcttct acatatttca
    10081 taggatcttt cttaaattcc tcatagtttt tttcatttga aaaataataa gttatacctt
    10141 tatagctgta agaaaaaggt gcttgagtgt taatgatctt atcttttgaa acaggatctt
    10201 gcacttgtat atctttaatt tgactaaaat aattagatcc tgctacaaca tctttaacat
    10261 ctatggtgat tttttcacca tcataatcgt attttaatgg gataggattg caaccccctg
    10321 tttttcctac actcggtaga aaaattcgca cattgcacga aatgcaaatt aattcccctt
    10381 cttttttaat ataacccata tccccacaaa tagcacaagc atcaaaaaca gccacaggag
    10441 aatccctatc ttctctttta ttgatgagga aaaaccttat cactttgcct tgctcgctta
    10501 tataagcaaa acgatgaagt ttgttatctc ttaaaagcgc tacatcaaag ataaatttgc
    10561 catttttatc aggtaaaagt tctgtaggct cgtctatgct taagggttta gaacttacca
    10621 taaaaaagta taagatgata caaaaactca aaatacaaga gataaaaaca ctagaaaaat
    10681 agcgatttat gagagtattt tttgcttcat ttttgcggta aacaatatct aaaatttgct
    10741 tttttacaat attttttttg cgaatttgca aacttaaaaa tgctaaaaaa atgatgaaaa
    10801 ataaataaac ataaattcca aaaacaccaa aataattact ttttccaaca aaacttacta
    10861 aaaaagtatg agtttctatg aaagaatttc gcatcagtgt aagcaatata tttgctaaaa
    10921 ccttatctcc ttctataaaa ataaggatta aaaaaagtat aaaacttgct tttttgttga
    10981 tattcttttg ccactttaaa aagaagaaaa ttaaaataca aattaataaa gctaaagcaa
    11041 taaaacctaa agaagaaatg gcttcgctat cgattaaaac accattaaat ataggaaaat
    11101 cttgagttaa attataataa tgcaaagcta tgcaaaaact caaaattcct agtaaaataa
    11161 aacttaaaat ttctattttt tgccaaaaat aaaacacaaa actcaaaagc aaacaggcta
    11221 taaaaataaa attgaaatta aatatcaaat tctcagtttt tagaaattgt gctgcaataa
    11281 aaaaagcaaa atatccaaat aaaaagccta aaaaaagagc taaaaagctt ttaaaaatat
    11341 atcttttatc gggcgtaata aaagccatta aaatacttaa gggcaagata ctagaaagaa
    11401 aatgcacaaa atatatactc ataatttact ctttaaacat tgttattttg attttaaaat
    11461 aaaaataaaa atatttaaac actcggaaaa tccgagtgta aaatcatttt ggtgtgcctg
    11521 tgtatttgaa tttataatca accttaaaag gctcaaacca cttacccacg cctgtttctt
    11581 catcaacatg gcgtccaaaa ccttgttttt ctggatttga gatataaaaa gtaagttcat
    11641 aatttcctac gccaaagcca ccttttttat ctttttccat agcaatattt gcaccatagt
    11701 gaggaccatc atcagccacc ataggcatca aagttccgcg tttaatcgca cctgtgtcgg
    11761 tatttttaag ttcataagct atagttaaat aaggcatcca aaaaccttct ggaaaaccat
    11821 ttggattgtt tttaagtgcg tgaatgtcag cttctaggtg aatatctgct aaagatgcag
    11881 ctaaatcaat acctcttggc tccatttcaa taggttgtaa ataaacagcg gctatttcca
    11941 tgccattaag ttcttttgga tcgccaattg gcacttcgcc tgcaaataaa tttgtactaa
    12001 taaccgcagc tgcagcaact actgataaaa ctttttttat catgatttta ctcctttttt
    12061 tgaaatttgt tttgttatta aaatgccaat gattagcata attaaaacta taaattgagg
    12121 gattaaagtc tcatagtaag gataaattcc aagccataaa atcggttcaa aattcatagg
    12181 tataagacta ggaatgatga cttttccttc tatgagttcg gctatgcctt tgcctgtaaa
    12241 aacaaaaacc atgtaaaaaa taatgtaaga agtgatatag aaaaattgtt ttacaggtat
    12301 gcgaatggct cctgctttta aaagaaaata taaaacaata agtattaaaa ttccaagtcc
    12361 aagtccgcca aaaacagcac caaaatcagt gcttgtttta gcatcaaaaa gcaaggcttg
    12421 ataaaaaagc acagtttctg caccttctct ataaacagct aaaaatacgg tgatccaaag
    12481 ggtttttgca ctattgtttg atatagcatc tatagcacct tgtttgataa agcttgtcca
    12541 ttttttattt tgtgcgtttg aaagcagcca aaagcccaca taaaagagta gtaatacggc
    12601 tataagcatg gtaataccct ctataagctc tctactttga cctgcatttt ctttaaatag
    12661 ccaagaaact ccaaaagcgg taataaaact taaaatcact cctgtaaaaa gagcactata
    12721 ggcgatattt agacgatttt tgttgccact ttgcacaaga taagaaacaa tggctacaac
    12781 gataatcaaa gcttccaagc cttcacgcaa aataatacct aaagcccata taaacagcga
    12841 ataaggagta gaatcttgaa ttttatccac gctgctggct atgagttgtt ctaagtcatt
    12901 aaaagtagct tcaagctctt ttttatctgc acttgcttta atcagtgcca cacctttgga
    12961 aaataaactt tctattttaa gttttaagcc gctatctaca gcaccgattt tattttccat
    13021 accgcttgct tcaaaaatat ctagataaat tccttgtaaa tcatctacta tagaagcact
    13081 aaagccatca taatttttta aaatttcatc taaagcaagt ttgatatcat tagaaacttt
    13141 ggcataatct ttgccttttg tttcatcatt aaagcctgaa atttgcaaac ttgaaagttc
    13201 tgaatttgga atttgtaaga aaacatcaaa aatttgttct tctatgctat ctaagccatc
    13261 tcttaagcct ttttcatcta tttttgcatc gttgatttgg cgtataaggg tgcgtatggc
    13321 ttgttgaatt ttttgatcgt ttcctacttt ggtaaattta tttactaaaa tttctacttt
    13381 ggtattgcga taatcactaa ataaggcatc atttaaaaaa tctttactag tttggtagtt
    13441 tttttcttta aaagcattag ctgcctgtga aaatttggta gagatattat ctagtataaa
    13501 ttgcaatctt gcgtccattg cagcggcagc ttgtaaatca ttatttatac tatcatttat
    13561 agtttcgttt tgggtactag aagaagaatt agtttttgct aaatcatttt tatcaatacc
    13621 catcatttgg gcaatcaaag cttctgcttc tgcttcacgc ttggcattgg cttgtatgct
    13681 tgatttttca gctgctgctt tatcgtaatt tgtatcactt gcttctgctt gtaagcgata
    13741 accattttgc aaaatcggag ctacttcatc aagatcataa taaagactat caattaaagc
    13801 attaatttgt gttaaaggag cttcatcttt atacatgcga cgcaaattta caaatttacg
    13861 ttccatagtg atagcttttc ttcctatgtt tcttcctatt gggccttcca tattttcaaa
    13921 atgttgaaaa taagcatctt cgctaagttt tttagccttt aaattatcgc ccttttcata
    13981 gctttttata ctctcttcta atatattttt aatagtatta gcttctgcta cataatcatc
    14041 aactctagca aaaacagaat ttgctagaaa gagcatagag agaaaaaaca aaattttaaa
    14101 aaatttcata catttcctta aaaaatataa aaaataatat ttattatcaa tattgataga
    14161 agtataatac aaaccatatt aaacaaaaat aaaaattatt tttatcgaat ttaaagggtt
    14221 aagtgtttaa aattttttcc gatactactt aagtcttcat acataaatta tacctaggag
    14281 ggtgttatga tttcagacgc aactatgagt aatgctaatt tattaacagc ggtaaatact
    14341 tcagttttga aaaaatcaat ggatacaaat gaagtgttga tgaatgagct tatcaaaggt
    14401 atggagagtg catcgggggc ttctgctttg caaacttcta gctctagcgg tttagatatt
    14461 tacgcttaag tatctttaaa tttagggtgt gctttacacc ctaaataagg atatatcttg
    14521 ttaaaataat catttcttta atattttttg gttataataa ttaacatatt gaattttata
    14581 atcaaggggc gtaaatgcaa gctgtaaaga aaataatttt aagtgaaact tttccaggca
    14641 ttttgctcat attttttact ctcttggctt tactttttaa aaattcttcc ttaagcgtta
    14701 tttatacaga tttttttcat gctaatttta ctataggatt tgatcatttt cagattgcta
    14761 aatctttgga tttatggata aatgatggtt tgattgctat ttttttcctt tgtataggac
    14821 ttgaattaaa atatgaaatt ttacgcggac aacttaaaaa tataagatcg gtttctttac
    14881 ctatatttgg agctttggga ggtatgattg tccctgcttt gattttttct gctattaatt
    14941 attctcatga atttgctatg aaaggatggg ctatcccaac agctacagat atagcatttg
    15001 cagtaggtat tttaatgctt ttaggaaata gaattccttc tagtcttaag ctgtt
//
LOCUS       DARAII010000034        14327 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.034, whole genome shotgun sequence.
ACCESSION   DARAII010000034 DARAII010000000
VERSION     DARAII010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14327
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.034"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..258
                     /locus_tag="SB143_000854"
     CDS             <1..258
                     /locus_tag="SB143_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase"
                     /protein_id="HEF9749405.1"
                     /translation="EKPSPQEAPSNLAIIGRYILTPDIFGILENTKAGKNGEIQLTDA
                     LLTQATNGMVLAYKFKGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            252..1472
                     /locus_tag="SB143_000855"
     CDS             252..1472
                     /locus_tag="SB143_000855"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEF9749406.1"
                     /translation="MLNNTLFFKESEIRTISSYANRINDEVESGDIGYYHLIDTSLTL
                     IDESLNFIQDKEHVKNIVLVGMGGSSCGVKALRDMLFDEKNNQRELFILDNTSSHSFS
                     RTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFIFITDKDSKLH
                     KEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNTKALLEGAKACFEDFFIHKK
                     DEILQKAYHYCTHKSANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTITFLKIKDSQKAPVIPDIHFKFLDDLSNKVNLHDLL
                     NTQCDATMHALIAENLSVDIIELEKLDAWHAGYLMYYYELFTSACGVMLGINTYDQPG
                     VEVGKLILKNILKS"
     gene            1597..2046
                     /locus_tag="SB143_000856"
     CDS             1597..2046
                     /locus_tag="SB143_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEF9749407.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFYSIHEHTEKAY
                     EEMAELFDDCAERALQLGEKAITCQKTLMENAKSPKVEKDCFTPVEVMELIKKDYEYL
                     LAEFKKLNEEAEKASDTTTAAFAQENIAKYEKSLWMLSSALQNTCKM"
     gene            2270..2853
                     /locus_tag="SB143_000857"
                     /pseudo
     CDS             2270..2853
                     /locus_tag="SB143_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838154.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipase"
     gene            2967..4004
                     /locus_tag="SB143_000858"
     CDS             2967..4004
                     /locus_tag="SB143_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9749408.1"
                     /translation="MKVLNFFYENHPKFEISYERKVQIPLCNIIIKGPKFSGKKTLIF
                     NYLSQFKPNEILFLNLYDTRFENQSLGHLSNFLEKNVQIKFLCIYNVEFALNLQDIKI
                     PIIISTDKKDLHIEGFQELELDYFDFEEFVSISRKNLPINNLVGLFLQSGRSKLGEKN
                     ILLRQNFNTLELEILKYLALNLGQQISISKLFLELKKKLKTSKDSVYHTIKELENTYI
                     IHPISHDEKKLQKIYFRDFGLRNNLCIQKDFAHLFENLILNELFKFKQEFFYNKFFTF
                     YSKVSKIAYISSPTLDIDLIKLRAKKILSKGLELGIFHVVFITLSSEDSFFEQGVKFE
                     VLPFDKFSLGF"
     gene            complement(4011..4742)
                     /locus_tag="SB143_000859"
     CDS             complement(4011..4742)
                     /locus_tag="SB143_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEF9749409.1"
                     /translation="MKRIIIFLSFYLLPLFGNSELKNGFGEEYYKLNVEQKRQIFFVK
                     MNAMFDKSFEEIAKERAFVEAFFYDAYKNGLRNSNQNNLEKLINLKNKYRVENLYDFT
                     EYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKH
                     KIRIFDSLQDSVDSYVLNLNRHFAYEEFRNERAKFESEGKEITGLEAIKTLDSYSERK
                     GYYINIVTKIIQRYDLERYDTPKSF"
     gene            complement(4717..5466)
                     /locus_tag="SB143_000860"
     CDS             complement(4717..5466)
                     /locus_tag="SB143_000860"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEF9749410.1"
                     /translation="MKFYKYCASGNDFVIMNASEKKDRSALAKELCNRYEGIGADGFV
                     VILPHKKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINGIKPHMAFLTGVGVIKAN
                     VDNNSVEVSLGKIKNIQDAFNECEKSWQLCDTGVPHLVHFCENLDEFDLKLCKQMREK
                     YNANVNFVKVENDNTLRVRTFERGVEDETQACGTGMGACFYLAFLNKKIHNQARIIPK
                     SGEELSFKFENEELFFKGKVRYCFEANYNFS"
     gene            complement(5463..6068)
                     /locus_tag="SB143_000861"
     CDS             complement(5463..6068)
                     /locus_tag="SB143_000861"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEF9749411.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADSIAHEILDKYA
                     LELAQIFSKFHKKNLLKAEGKIDRKILGEIVFQNKEAKTILENFTHPKIRAQILEQMQ
                     ILEQENKPFFVEIPLFFESGAYDGLGKVILIYAPKELSLKRIIQRDNLSLEAAKARLD
                     SQMNIEEKLKKADFIIKNTGSYVDFRQECVKVIQNISKGKM"
     gene            6129..7118
                     /locus_tag="SB143_000862"
     CDS             6129..7118
                     /locus_tag="SB143_000862"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEF9749412.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDKVVGGIGSFAGA
                     FRMPSGFKNPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKSVVAGIAEGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFEGLKLKFDDKIEGKNLIDVL
                     LEPTRIYVRDFLTLKPYINALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSRVLENSDAFIIGEICINEGIVLE"
     gene            7179..8156
                     /locus_tag="SB143_000863"
     CDS             7179..8156
                     /locus_tag="SB143_000863"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749413.1"
                     /translation="MKNIVFHSDGFGDLLVCFKALYAIKQLYPEYKLFLLTNGLMESD
                     FLEKIPFIDEVLIYKDDFLEKIQSKNPVIFITTRRQGLYFKKLKFLNVQKCIVFPHLI
                     SIISKNLTTPLPFFRAKKHMSEIVLKLVRMINTRHFDKNFNQIDFSKIKNLLPYDARL
                     SDNFFKQIDTKYEKIIGINAFSNNSEYRGFNFFIKDWIGLARQLSLKYPKFLFILLNF
                     STNSIQYNIDQNANLKVFCNNKNIASLVSISQKLDFLITVDTGNLHLCDILQIPTLAF
                     TSSLAAYRFGGGSYGGRFDKLIVKPAWQKEYRKIYEIFTKKAENNLENL"
     gene            complement(8108..9631)
                     /gene="dcuC"
                     /locus_tag="SB143_000864"
     CDS             complement(8108..9631)
                     /gene="dcuC"
                     /locus_tag="SB143_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HEF9749414.1"
                     /translation="MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYI
                     TGTPIPKAPSREHASFLNVLLDSYAFITATFKSQLSGVGLIIMSVAGFAAYMKHINAS
                     AKLAFLANKPLGKIKNKYLILSGTFIVGMALKIVISSYAGLLLLLLACIYPVLISLKI
                     RPITAVCVLSLIALDYGPKDGNSINMADMVGQSDNVVGLFLNYQIYSVIAYVVVIAIL
                     IPFYFAWIDKRDKEKGVLNDEVEIPQIIDPKCPTFYILFPWLPVVFLFTAYFFTIKLD
                     VVTANFVSISLVFLVEFARHRNARKLGEDMMVILKAMAEIFISVVSIIIAAGVFAEGI
                     KALGGVNILANAVSNLGTGNFAWFGILLSITVLSFLVYFATVIMGSGIAAFNAFGKLA
                     PDIATKLGVAPITFVLPIEIASCLGRAASPIAGGIIALAGFAKVAPMDIIKRTTPLLL
                     IAMLVNVLVAFYLAQTNPLPKEQNTTKIAVSLNNKYLLFYKNYKFSKLFSAFLVKIS"
     gene            9839..12793
                     /gene="cas9"
                     /locus_tag="SB143_000865"
     CDS             9839..12793
                     /gene="cas9"
                     /locus_tag="SB143_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEF9749415.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKGKILKAIKQNEEKLVNYQ
                     SVGEYLYKEYFQKFKENSKEFINVRNKKESYERCIAQSFLKDELKLIFQKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFSDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEAYNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKNFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            12790..13680
                     /gene="cas1"
                     /locus_tag="SB143_000866"
     CDS             12790..13680
                     /gene="cas1"
                     /locus_tag="SB143_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEF9749416.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALISNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            13673..14104
                     /gene="cas2"
                     /locus_tag="SB143_000867"
     CDS             13673..14104
                     /gene="cas2"
                     /locus_tag="SB143_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEF9749417.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF"
BASE COUNT         5257 a         1944 c         2321 g         4805 t
ORIGIN      
        1 gaaaaaccat ctcctcaaga agctccaagc aatcttgcta tcataggaag atatatttta
       61 actcctgata tttttggaat tttagaaaat actaaagcag gaaaaaatgg agaaattcaa
      121 ctcacagatg cacttttaac ccaagcgact aatggtatgg ttttagctta caaatttaag
      181 ggaaaacgct ttgattgcgg aagtgtagag ggctttgtag aggctacaaa ttatttttat
      241 gagaaaagta aatgctaaat aatactcttt tttttaaaga aagtgaaatt cgcactataa
      301 gttcttatgc aaatcgtatc aatgatgaag tagaaagtgg ggatataggg tattatcatc
      361 ttatcgatac aagtttaacc ttaatagacg aaagcttaaa tttcatacaa gataaagagc
      421 atgtaaaaaa tattgtttta gtgggtatgg gtggttcaag ttgcggtgtt aaagctttgc
      481 gtgatatgct ttttgatgaa aaaaataatc aaagagaact ttttatactt gataatacca
      541 gttcgcactc ctttagcagg actttagaga aaatcaagct tgaagaaagt ttgtttttaa
      601 tcatcagtaa aacaggtagc actatagaag tagtatcgct ttttaagctt cttatagaac
      661 attttaaact cgatatgcaa gaattaaaaa aatactttat ttttatcaca gataaagatt
      721 ctaaactgca taaagagggt gagaatttag gcatcaaatg cttttttatc cctgcaaatg
      781 taggagggcg ttttagcata ctttcagctg tgggtatagt gccactttgt ttttgtggtt
      841 ataatactaa agctctttta gaaggagcta aggcatgctt tgaagatttt tttatacata
      901 aaaaagatga aattttgcaa aaagcttatc attattgtac tcacaaaagt gcaaatatca
      961 atgtactttt ttcttacagc gatgctttta agggttttaa tgaatggtat atccagctta
     1021 ttgctgaaag tttgggtaaa aaacaaggct acaaacgcat aggtttaact cctatcgctc
     1081 ttataggagc aagggatcag cacagctttt tacaactcat tatggatggg ccaaaaaaca
     1141 aaactattac ttttttaaaa atcaaagata gtcaaaaggc tccggttata cccgacatcc
     1201 attttaaatt tttagatgat ttgagcaata aagtcaattt acacgatctt ttaaatactc
     1261 aatgtgacgc gacaatgcat gctttaattg ctgaaaattt aagtgtcgat ataatagagc
     1321 ttgaaaaatt agatgcatgg catgcgggat atttgatgta ttattatgag ctttttactt
     1381 cggcttgtgg ggtaatgcta ggaattaata cttatgatca gcctggggtt gaggttggga
     1441 agttgatttt aaaaaatatt ttaaaatcat agtaaatttt aaataaaaag agtataatag
     1501 aaataagtaa aattaataat aaaaattttt aactaataat aattattatt taagaatttt
     1561 atgttataat tttaaaaatt aaaaaaagga gttaacatgt cagtaacaaa acaattatta
     1621 caaatgcaag cagatgccca tcatttatgg gttaaatttc acaattatca ttggaatgtt
     1681 aagggtttac agttttattc aattcatgag cacactgaaa aagcttatga agaaatggca
     1741 gaactttttg atgattgtgc agaaagagct ttgcaacttg gtgaaaaagc tatcacttgc
     1801 caaaaaactt taatggaaaa tgcaaaaagt ccaaaagtag aaaaagattg tttcactcca
     1861 gttgaagtga tggagttgat caaaaaagat tacgaatatc ttttggcaga atttaaaaaa
     1921 ttaaacgaag aagctgaaaa agctagcgat actactacag ctgcttttgc tcaagaaaat
     1981 atagcaaaat acgaaaaaag cctttggatg ctttcttcag ctttacaaaa tacttgcaaa
     2041 atgtaatttc aaggggcttt ttgccccttt atgatttaaa tcaattttta gaactttctc
     2101 ataaaaaaac ttaaattctc aagagtcaaa tttaaagaaa aatttatatt ttgattttaa
     2161 gcaaaataaa aatactctaa tacatttata tcattacgcc ttactttctc atgctgctta
     2221 tcttaattta aatacaacag atattttttt aaatatagat agaaaaacat tgtttaaggt
     2281 tttaactcat aatatttttc aaaaagaatg cgttataata ggaaaatttg agcctttgat
     2341 ggcattttat tttattaagc gatttgattt acttgctcat attaatgaag attatcttga
     2401 ttcaaggggt gggtttagag caagtttatt tcaaaacaag gaaaataaag aatttatttt
     2461 agctatcgca ggaagtgatt taagaccttt aaaatttgat attggagatt tgattagtga
     2521 ttttatactt ctaaatggaa aaattcctaa aaaacaattt gattctttgt taaaatttta
     2581 tacactaata aaaaaagaat tttgctttgg taaaattact ttagtaggac attctttagg
     2641 tgggcattta gcacagcttt ttgttttaga ttttgcctta gaagttcaaa atatttacac
     2701 ttttcaagcc ccaggtattg ctaaaaaata ctaaaggaca tcaaaaatga agcttatatc
     2761 caaaaaattt cttatcattt tcatacttgt ggtgatttta aaaaaatgca tggtataaat
     2821 ttaattttgt tcaaaatttg cattctaaaa taggatatcc aatttagcta aatataggaa
     2881 ataaattcca tcatcctaag atttgtccca agatattgca taaggtttta aatatgttat
     2941 aattttcctt tttaaaagga taatatttga aagtattaaa ttttttttac gaaaatcatc
     3001 ccaaatttga aataagctat gaaagaaagg tacaaattcc tctttgtaat atcatcatca
     3061 aagggccaaa atttagcggt aaaaaaacct tgatttttaa ctatttatcc caatttaagc
     3121 ccaatgaaat tttattttta aatttgtatg atactcgttt tgaaaaccaa agcttagggc
     3181 atctttcaaa ttttttagaa aaaaatgtcc aaataaaatt cctttgcata tacaatgtcg
     3241 aatttgcctt aaatttgcaa gatattaaaa ttcctatcat cataagtaca gataaaaaag
     3301 atttgcatat cgaaggattt caagagcttg agcttgatta ttttgacttt gaagaatttg
     3361 taagtatcag tagaaaaaac ttaccgataa acaatctagt gggacttttt ttacaaagtg
     3421 ggcgtagtaa attaggtgaa aaaaatatac ttttaagaca aaattttaac actctagaac
     3481 ttgaaatttt aaaatactta gctttaaatt taggacagca gatcagtatt tccaagcttt
     3541 ttttagagct taaaaaaaag ctaaaaacat ctaaagatag cgtttatcac accataaaag
     3601 agcttgaaaa tacctatatc atccatccta taagccacga tgaaaaaaag cttcaaaaaa
     3661 tttattttag ggattttggc ttaagaaaca atctatgcat acaaaaagat tttgctcatt
     3721 tgtttgaaaa tcttatttta aatgagcttt ttaaatttaa acaagaattt ttttacaata
     3781 aattttttac attttatagt aaggtttcaa aaatcgcata tatttccagt ccgacgctag
     3841 atatagactt gatcaaattg cgcgctaaga aaatcctttc taagggtttg gagcttggga
     3901 tttttcatgt ggttttcatc actctttcga gcgaagatag cttttttgag caaggggtga
     3961 aatttgaagt tttgcctttt gataaatttt cactcggctt ttagctaaga ctagaaagat
     4021 tttggagtat cgtatcgctc aagatcgtat cgttggatga ttttagtaac gatattgata
     4081 taataaccct tgcgctcgga gtaagaatct aaagttttaa tagcctctag tcctgttatt
     4141 tctttgcctt cgctttcaaa tttagctctt tcgttgcgaa attcctcata agcaaagtgc
     4201 cgatttaaat tcagcacata agaatccaca ctatcttgca agctatcaaa aattctaatt
     4261 ttatgttttt tatcaggatg tcttagatca gggattaagc ccttttctcc ccaggtccat
     4321 tctccaaaaa gattatttgc ctctcttgca aaacggcttg ttcccgtagc actttcgacc
     4381 aaagcttggg ctatacccat ggattttgga attttttgaa tgcgtttttt gtattctgta
     4441 aaatcataaa gattttcaac gcggtatttg tttttaagat tgattaattt ttctagattg
     4501 ttttggtttg aatttctaag tccattttta tacgcatcat aaaaaaaagc ttctacaaaa
     4561 gccctttctt tcgctatttc ttcaaagctt ttatcaaaca ttgcattcat tttgacaaaa
     4621 aatatttgtc ttttttgctc tacattgagt ttataatact cctctccaaa gccattttta
     4681 agctcgctat tgccaaaaag agggagtaaa taaaaactaa gaaaaattat aattcgcttc
     4741 aaagcaatat ctcacttttc ccttaaaaaa taattcttca ttttcgaatt taaagctcag
     4801 ctcttcaccg ctttttggga tgattctagc ttgattgtgg atttttttgt ttaagaatgc
     4861 aagataaaaa caagctccca tgcccgtgcc acatgcttgc gtttcatctt ctacgcctct
     4921 ttcaaaagtg cgaactctta aagtattgtc attttcaact tttacaaaat ttacattggc
     4981 attatatttt tctctcattt gtttgcaaag cttaagatca aactcatcca aattttcaca
     5041 aaaatgcacc aaatgtggaa cccctgtatc gcaaagttgc cagctttttt cgcactcatt
     5101 aaaggcatct tgtatatttt ttattttacc caaagaaact tctacgctat tattatcaac
     5161 atttgctttt ataactccta ctccggtaag aaaagccata tggggtttga taccatttat
     5221 atggtgtgca aaatgtgccg cagcccttga gccattgcca cacatagcag cccttgagcc
     5281 atcgttatta taaaattccc attcaaaatc gtatttttta tgaggtaaaa tcactacaaa
     5341 gccatctgca cctatgcctt cataacgatt gcaaagttct ttagctaaag cacttctgtc
     5401 ttttttttca ctcgcattca ttatcacaaa atcattgcca cttgcgcaat atttataaaa
     5461 cttcacattt ttcctttgga aatattttgt attactttaa cacattcttg cctaaaatcg
     5521 acataagagc cagtattttt aatgataaaa tccgcttttt taagtttttc ttcaatattc
     5581 atttgagaat caagccttgc ttttgcagct tctaagctta aattatctct ttgtatgatt
     5641 ctttttaggc tgagttcttt aggagcatag attaagatca cttttcccaa accatcataa
     5701 gcaccgcttt caaaaaaaag aggaatttct acaaaaaaag gtttattttc ttgttctaga
     5761 atttgcattt gttctaaaat ttgagcacga attttaggat gggtgaaatt ttctaatatg
     5821 gttttggctt ctttgttttg aaaaacaatt tctccaagaa tttttctatc tatcttgccc
     5881 tctgctttca ataaattttt tttatgaaat ttagagaaaa tttgagccag ttccaaagca
     5941 tatttatcta aaatttcgtg agcgatactg tctgcactaa tgcttttaaa gcccaaagaa
     6001 tttgctattt ctataaaagt gctttttcca caggctatag aggcggttac aaaaaaagcg
     6061 tttttcatct tatgccttat taaaactttt ttcgttaaaa tatcttttta gttcttaaag
     6121 gaaaataaat gaaaatttca tacgaagatg ctggagtaag tatagataat ggcaatgcct
     6181 ttgtagaggc gatcaaacct ttggtaaaag aaacctttaa cgataaagtt gtaggaggta
     6241 ttggctcttt tgctggagct tttagaatgc caagtggctt taaaaatcct gtaattttgg
     6301 gggctacaga tggtgttggg actaaacttc gtttggctat tgatgcaaaa aaatacgaca
     6361 ccatagggca agatttagta gcaatgtgcg tgaatgattt gatttgtaat tttgctactc
     6421 ctttgttttt cttggattat tacgctacag ccaagcttga agtagaggtt gcaaagtcag
     6481 ttgtggcagg cattgccgag gggtgtaaaa tggcaaattg tgctttaata ggcggagaga
     6541 ctgccgaaat gcctggaatg tatgcaaaag atgattttga tcttgcgggt tttgcagtgg
     6601 gcatggctga agaagatgag atcgatagaa gtaaatttgt taaaaatggc gatattttgc
     6661 ttgctcttcc tagttcagga cttcattcaa atggctattc tttagcaaga aaagtacttt
     6721 ttgaaggttt aaaactgaaa tttgatgata agatagaagg taaaaattta atcgatgttt
     6781 tattagagcc tacaagaatt tatgtacgcg attttcttac tttaaagcct tatatcaatg
     6841 ctttagcaca catcacaggg ggtggtttag tagaaaattt accacgcgtt ttgcctcgcg
     6901 gaatgggagc aactatacgc aaacatcatc ttaaaacccc tgaaattttt tatactatag
     6961 gacaggctgt ggaagaaagc gaaatgtata gaagctttaa tatgggagtg ggtttagtaa
     7021 tggttgtaga tccttctaat gtaagtaggg ttttagaaaa ttcagatgcc tttattatcg
     7081 gcgaaatttg cattaatgaa ggtattgttt tagagtgaaa agaatttatt tttttaagat
     7141 attttaagag taaattaaaa aaataataag gaaaagtgat gaaaaatatt gtctttcatt
     7201 cggatggttt tggagattta ttagtttgtt ttaaggcttt gtatgctata aagcaactct
     7261 atccagagta taaattattt ttattaacaa atggattaat ggaaagtgat tttttagaaa
     7321 aaattccatt tattgatgaa gttttgattt ataaggatga ttttttagaa aaaattcaaa
     7381 gcaaaaatcc agtaattttt attaccacgc gaagacaagg tttatatttt aaaaaattaa
     7441 aatttttaaa tgttcaaaaa tgtatagtat tccctcatct tattagtata atttctaaaa
     7501 atttaaccac acctttacca ttttttagag ctaaaaaaca tatgagtgaa attgttttaa
     7561 aattggttag gatgattaat actaggcatt ttgataaaaa ttttaatcaa attgattttt
     7621 ctaaaattaa aaatttatta ccttatgatg caagattaag tgataatttt tttaaacaaa
     7681 ttgatacaaa atatgaaaaa attataggta ttaatgcttt ttcaaataat agcgaatata
     7741 gaggatttaa tttttttata aaagattgga tagggcttgc aaggcaactt tctttaaaat
     7801 atcctaaatt tttatttata cttttaaatt ttagtacgaa ttctattcag tataatattg
     7861 atcagaatgc aaatttgaaa gttttctgta ataataaaaa tattgcttct ttggtaagta
     7921 tttctcaaaa gctagatttt ttaattactg ttgatactgg aaatttacat ctttgtgata
     7981 ttttacaaat tcctactttg gcttttacaa gtagtcttgc agcttataga tttggaggtg
     8041 gaagttatgg aggtagattt gataaattga tagtaaaacc agcttggcaa aaagaatata
     8101 gaaaaattta tgaaattttt actaaaaaag cagaaaataa tttagaaaat ttatagtttt
     8161 tataaaataa taaatattta ttatttaaag atactgctat ttttgtagtg ttttgttctt
     8221 ttggcaaagg attggtttgt gctagataaa aggctacaag cacatttaca agcatagcga
     8281 taagtaaaag aggagtggtt cgttttataa tatccattgg agctactttt gcaaatccag
     8341 ctaaagctat gattccgcct gctattggtg aagctgcacg acctaaacaa gatgcaattt
     8401 ctataggtaa aacaaaagtg ataggggcaa cgcctaattt tgtagctata tcaggagcta
     8461 atttcccaaa agcattaaaa gcagcaatcc cacttcccat aatcactgta gcaaaataaa
     8521 ctaaaaagct taaaacagtg atgcttaaaa gtatgccaaa ccatgcaaaa tttcctgttc
     8581 caagatttga aaccgcgtta gcaaggatat taactccacc aagtgcttta atgccttcag
     8641 caaatactcc agcggcgatg attatgctta cgactgagat aaaaatttca gccatagctt
     8701 ttaaaatcac catcatatct tcgcctaatt ttctagcatt tctatgtctt gcaaattcaa
     8761 caagaaaaac taaagaaatg cttacaaaat ttgctgttac aacatcgagc ttgatagtaa
     8821 aaaaatacgc tgtaaataaa aatacaacag gtaaccaagg aaagagtatg taaaaagtag
     8881 ggcatttagg atcaatgatt tgcggaattt caacttcatc atttaaaaca cctttttctt
     8941 tatctctttt atcaatccaa gcaaaataaa aaggaatcaa gatggcaata actacaacat
     9001 aggcaatcac actataaatt tggtaattta aaaaaagccc tacgacatta tcactttgtc
     9061 ctaccatatc tgccatattg attgaatttc catcttttgg accataatca agcgcaatta
     9121 aagaaagcac acatacagct gtaataggac ggattttaag tgagattaaa acaggataaa
     9181 tacatgctaa taaaagcaaa agaagtccag catagctaga aataacaatt tttaaggcca
     9241 ttccaacgat aaaagttccg cttaaaatca aatatttatt tttgattttt cctaaaggtt
     9301 tgtttgctaa aaaagcgagt ttagccgaag cattgatatg tttcatataa gcagcaaaac
     9361 ctgccacact catgataata agtcctactc cagaaagctg acttttaaaa gtcgctgtga
     9421 taaaagcata gctatcaagt aaaacattca aaaagcttgc atgttctctg ctcggggctt
     9481 ttggtatagg tgttcctgtg atgtaaaaag caaaaataag caagataata cctgaaagaa
     9541 aaaatacaaa aataggattg tattttttaa gtatataata agcaacgaca attaccgcta
     9601 aaagtgtaga acatatcata aaaattggca tgttttctcc taaagttatt attagctttt
     9661 attttatttt agctaaaatt taactaataa atatttttca tttaaaattt tacttatttt
     9721 ttgcattata aaattaataa tatgtatagt ttggttactg aaaagtttat gtttgtttaa
     9781 aaaaatgatt tttgtattat aattatacac aaattataaa tatcaaaaag gatctagtgt
     9841 ggcaagaatt ttggcatttg atataggaat aagctctatt ggctgggcat ttagtgaaaa
     9901 tgatgagtta aaagattgtg gagttaggat ttttacaaag gctgaaaatc ctaaaacagg
     9961 agaatcctta gccttgccaa gacgccttgc aagaagtgcc agaaaacgcc ttgctagacg
    10021 caaagcaagg ctaaatcact taaaacattt aatcgcaaat gaatttaagt taaattacga
    10081 agattatcaa agctttgatg aaagtttagc taaggcttat aaaggctctt taattagccc
    10141 ttatgagtta agatttagag ctttaaacga gcttttaagt aagcaagatt ttgcaagagt
    10201 gattttacat attgcaaaaa ggcgtggcta tgatgatatt aaaaataatg gtgatgaaga
    10261 aaaaggcaag attttaaaag ctatcaagca aaatgaagaa aaactagtaa attatcaaag
    10321 tgtgggagag tatctttata aagagtattt tcaaaaattc aaagaaaatt ccaaagaatt
    10381 tataaatgtt agaaataaaa aagaaagtta tgaacgctgc atagcgcaaa gttttttaaa
    10441 agatgaatta aagcttattt ttcaaaaaca aagagaattt ggcttttctt tttcaaagaa
    10501 atttgaagaa gaagtgctta gtgtagcatt ttataaaagg gctttaaaag atttttctca
    10561 tttagtggga aattgtagtt tttttagcga tgaaaaaaga gcgccaaaaa attcgccttt
    10621 agcttttatg tttgtagcac ttacaagaat tatcaatctt ttaaacaatc ttaaaaatac
    10681 tgaaggaatt ttatatacaa aagatgattt aaacgctctt ttaaatgaag ttttaaaaaa
    10741 cggcactcta acttataaac aaacaaaaaa gcttttgggt ttaagcgatg attatgaatt
    10801 taaaggagaa aaaggaactt attttattga gtttaaaaaa tacaaagaat ttataaaagc
    10861 tctaggtgag cataatttaa gccaagatga tttaaatgaa atagcaaaag atattactct
    10921 tataaaagat gagattaaac ttaaaaaggc tttagcaaaa tatgatttaa atcaaaatca
    10981 aattgatagt ttaagcaaat tggaatttaa agaccattta aatataagtt ttaaagcctt
    11041 aaaacttatc actcctttaa tgcttgaagg taaaaaatac gatgaagctt acaatgagct
    11101 taatttaaaa gtagcaatca atgaagataa aaaagatttt ttacccgcat ttaatgaaac
    11161 ttattacaaa gatgaagtaa ctaatcctgt ggttttaagg gcgattaaag aatatagaaa
    11221 ggtcttaaat gccttactta aaaaatacgg taaagtgcat aaaataaaca ttgaattagc
    11281 aagagaagta ggtaaaaatt acagccaaag agctaaaata gaaaaagagc aaaatgaaaa
    11341 ctacaaggcc aaaaaagacg ccgaacttga atgtgaaaaa ctaggcttaa aaataaatag
    11401 caaaaatatt ttaaaattaa gattatttaa agaacaaaaa gaattttgtg cttatagtgg
    11461 agaaaagatt aaaattagtg atttgcaaga tgaaaaaatg cttgaaattg atcacattta
    11521 cccttattct agaagttttg atgattctta tatgaataaa gttttagttt ttaccaagca
    11581 aaatcaagaa aaacttaatc aaaccccctt tgaagccttt ggcaatgata gtgcaaaatg
    11641 gcagaaaatt gaagttttag caaaaaattt gcctactaaa aagcaaaaaa gaattttaga
    11701 taaaaattac aaagacaaag agcaaaaaaa ctttaaagat agaaatctaa acgatactcg
    11761 ctacatagca aggcttgttt taaactacac taaagattat ttagattttt tacctttaag
    11821 cgatgatgaa aatacaaaat taaacgatac acaaaaaggc tcaaaagtgc atgtagaagc
    11881 aaaaagcggt atgcttacat cggctttaag acacacttgg ggctttagcg ctaaggatag
    11941 aaataaccat cttcatcacg ccatcgatgc agtaattatt gcttatgcaa acaactctat
    12001 cgtaaaggct ttttcagatt ttaaaaaaga gcaagaaagc aacagtgcag aactttatgc
    12061 aaaaaaaatt agtgaattag attataaaaa caaaaggaag ttttttgagc cttttagtgg
    12121 ttttaggcaa aaggttttag ataaaattga tgaaattttt gtctcaaaac ctgagagaaa
    12181 aaagccaagt ggagctttac atgaagaaac atttagaaaa gaagaagaat tctatcaatc
    12241 atacggcgga aaagaaggag ttttaaaagc cctagagctt ggtaaaatcc gcaaagtaaa
    12301 tggtaaaata gttaaaaatg gcgatatgtt tagagtggat atttttaaac acaaaaagac
    12361 aaataaattt tatgctgtgc caatttatac tatggatttt gctttaaaag tattaccaaa
    12421 taaagctgta gcacgaagta aaaaaggtga gataaaagac tggattttaa tggatgaaaa
    12481 ttatgagttt tgcttttctt tatataaaga tagtttgatt ttaattcaaa ctaaagatat
    12541 gcaagagcca gaatttgttt attataatgc ttttacaagc tctactgtta gtttgattgt
    12601 ttcaaaacac gataataaat ttgaaacgct aagcaaaaat caaaaaatat tgtttaaaaa
    12661 tgcaaatgaa aaagaagtaa tcgcaaaaag cataggaatt caaaatctaa aagtatttga
    12721 aaaatacata gtttcagcac ttggagaagt gacaaaggct gagtttagac aaagagaaga
    12781 ttttaaaaaa tgagttacga tgaagctttt aaaacactgc ttattagctc taatgccaag
    12841 ctaaatttag agttaaatca tcttgtgatt aagcaagatg aaaatatagc caaattgttt
    12901 ttaaaagata taaacatcat cgttttagaa agcttacaag taagcctgag ttccgcactt
    12961 tttaacgctt ttgcaaggca taaaatcatc ttactaacct gcgatgaaac tcatagtata
    13021 aatggtgttt ttactccttt tttagggcat tttcaaagtg caaaaatcgc aaaagagcaa
    13081 atgaatgtaa gtgctcaaaa aaaggctatt ttatggcaaa aaatcattaa aaataaaatc
    13141 ctaaatcaag cctttgtttt gaaaaaacac aataaaatag agcaaagcaa tgagcttata
    13201 aatttggcta aaaaagtaag cttaaatgat agtaaaaata tcgaagctgt tgcggcggcg
    13261 ctttatttta aaactttgtt tggcgtttct ttttcaagag atgagctttg ctttgaaaat
    13321 tctgctttaa attatggcta tgcaatcatt agagcttgta ttattagagc agtttgtata
    13381 agtgggcttt tgccttggct tggcataaag cacgataata tttataattc ttttgcgctt
    13441 tgcgatgatt tgatagaagt gtttagggct agtgttgatg attgtgtttt aaagcttaag
    13501 ggtgaaagtg agtttttaag caaagatgac aaaagagcgt taattagcaa tttacaaagc
    13561 aaaatcaatt ttgatgggca aaattatcct ttaaatagag cgataaatca ttatgtggcg
    13621 aattttaaaa atgctttatt gtatgaagat gaactaaaga tagtaaaatt tgatgattga
    13681 agataaattt atgcgtgtgc ttttgatgtt tgatgtgcca actaaaagta aaaaagagca
    13741 aaaactagca agtaaattta gaaacaatct tataaaattg ggttatttta tgctacaatt
    13801 tagcgtttat atgcgtattt gcaagggttt aagttctgca aaaagttcta ttgaaaatgt
    13861 aaaaaagatt ttgccacctt atggaaatgt aagggcttta atcatcactg aaaagcagtt
    13921 tgataaaatg gagcttttgc ttggtggcat agtttttaat gaaaaagtta ataacgaaac
    13981 taatttaacg ctttttgata tagatagtca tggagaattt aaatacaaaa attcaaataa
    14041 tgaagaaata caactaaaca aaaaacaaga aaaatatcat cagcaaaatt tatttgaatt
    14101 ttaaaagcgg ttttagggga ttgtaacccc gcagagtccc gcaaactctt tattttagtc
    14161 cctttttaaa tttcttattg agattatagc ataatttttg ctatttttca tcaaaaaacc
    14221 ccgaaatttt cattatctgg taaatatcta ttttaccata aagaaattta aaaagggact
    14281 aaaacatctt gtttagcttc aacctcatct tcatcatttt accataa
//
LOCUS       DARAII010000035        14110 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.035, whole genome shotgun sequence.
ACCESSION   DARAII010000035 DARAII010000000
VERSION     DARAII010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14110
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.035"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..527)
                     /locus_tag="SB143_000868"
     CDS             complement(<1..527)
                     /locus_tag="SB143_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEF9749418.1"
                     /translation="MKKIIFLLCLCISFVFAKQIYIVHGYGSDENYGFLPSVAKNLKA
                     KNHEVLLLSFPNAFSPKLDEWMQTMSQNFTKLDENTFFITHSLGGVAVLDFLNSLDER
                     TKIGGVIMVAPFDEPLAKLPILNDFIKPKLDYKKLDNMIIHKIIISAKDDKVVPIWVS
                     ENLAKKLNAKFIQTP"
     gene            complement(554..2041)
                     /locus_tag="SB143_000869"
     CDS             complement(554..2041)
                     /locus_tag="SB143_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEF9749419.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYSEQISWILFLKFLDDYEEEL
                     KLEAILNDKAYKSILEEKFSWRIWAAPKTSEGKLDVKNALSGDDLLSFVNNELFPYLK
                     SFKDNENFKSIEYKIGGIFEFIDNRIANGHTLREVINLVDELSFSKESDVFALGEVYE
                     KLLKDMGSDGGNSGEFYTPRPLIRAMVEVIDPKAKERIYDPACGSCGFLVESFLHILY
                     EDRNKNKKANLSVEELEFLQNDALFGKEKTPLSYAMGVMNMILHEVKSPNIIKTNTLN
                     KKITDITQSEKYEVILANPPFGGKEKEQIQNNFPVKSNATELLFLQHILKSLNNNGRC
                     AIIVPEGVLFQNSNAFVSVKKDLLENFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKR
                     SICGEDDKVYYYELIPPFKLTKNKPLEYAHFEEFLKIYKERKITPHSYLVSIKELEER
                     NYDLSAKNPNSKEEKTLREVEEILSTLKANQEKANELLQKIQNII"
     gene            complement(2042..3112)
                     /locus_tag="SB143_000870"
     CDS             complement(2042..3112)
                     /locus_tag="SB143_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEF9749420.1"
                     /translation="MKEFIPQKLPLNIELNANIYSLIIKASRKLAELNGLSKSIPNPN
                     ILINALILQEAKDSSEIENIITTHDELFLSQIDESKLTRAAKEVKDYENALKKGYELL
                     KKERLLRNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNHSDIQELMRN
                     LEQYINDDTLDELDFLVKMAIIHYQFESIHPFYDGNGRTGRIINILYLIYKGLLDLPI
                     LYLSAYIVKNKGEYYSLLQKVRDEGAILEWIEYILKGVEQTAIKTIETIATIEKMMLN
                     VSEILQNKTNFYSKDFVELLFSHPYTKIDFLIEKLNISRQSASKYLKICENLGVLECI
                     KIGRNHYYINIELLRLFKKGIF"
     gene            complement(3232..4428)
                     /locus_tag="SB143_000871"
     CDS             complement(3232..4428)
                     /locus_tag="SB143_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEF9749421.1"
                     /translation="MTNLPQGWEVKKLEEIANIKGGKRLPKGENLLDNNTKFTYIRVA
                     DFQDNGTINLQNIKFINENTYNVLKNYKIYDDNLYISIAGTIGKSGIIPKELNGAILT
                     ENAVKLEYIQNNISNKFMYFFTLSNIFKTQIQTSTKIVAQPKLAITRLKQIQIPLPPL
                     KEQERIVGILDESFAKIDESIKILEQNLLNLDELMQSALQKAFNPLKDNAKENYKLPQ
                     SWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYANGVNNNGLVGYTDKATIIKP
                     SLTISARGTIGFVCIRKEPYFPIVRLISLIPCENILCLHYLYFCLNFFIAKGEGSSIP
                     QLTIPKFKSLQIPLPPLKEQEQIAKHLDFVFEKTKALKELYTKELKDYEELKQSLLNK
                     AFKGEL"
     gene            complement(4430..6760)
                     /locus_tag="SB143_000872"
     CDS             complement(4430..6760)
                     /locus_tag="SB143_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002817007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749422.1"
                     /translation="MKILKFDKINFGSYENFTWDNGLEEFKTINIFYGRNYSGKTTLS
                     RIARSFELKKHNEDFLDGNFKIKLEDGSFLTQNDVINSNLDIRVYNSDFVKENLNYLY
                     DKKGNIKGFKSIGVEQKDIKESIEKRKEILKTRNEKLKDIQANRENISKTQQAKIKTL
                     NEKLIDKAKLVKSEPNLIKQGSNYDKRNLENDLIEIKDNINAYILNNEEQNQLIKILE
                     DKEKQNIIFKNTFNKDNFQGIFTYSLKILEKEVIIKENLTSELRKWLEEGLEFHKEHS
                     FTQQCKFCNNPLTLERIAWIENNIKDDSGEKEQIEKELKDLLDNFESYKLESKKLLLG
                     IEYENFYSNYKDIFIGLKEQLGVSIANYNEELLKIEKKLTKKKKDVFTPIKLENINDF
                     SDEILQILNKIENLCKENNEYAKNLLSKQDEARKKLRLNEVAKFAKDSDCFAKQDEIK
                     NLGQKLSNMQSTIETEKNEINNYNLEIEKYKEKLSNLETSTSNINKYLKSYFGHNMLE
                     LKAKKDDKGQLNGEFEILRNGKQAKNLSEGECSLVAFCYFVASLEDANTKDKNPIIWI
                     DDPISSLDNNHIFFIFSLIEAKIAKKIKDNKYSQLFISTHNLDFLKYLKSLTGYDKND
                     KKSFMYLIEKTNNSDIKILPDYIRKYVTEFNYLFEQIFKNYNNTNITIDSYYSLANNI
                     RKFLDTYMYFKYPNNDSLMTKYYIFFGEENAILINRVINEFSHLENIERAKMPLDLLE
                     IHKVVNIIIENIKNKDKEQFEALLKSLDIEENDNAK"
     gene            complement(6764..9082)
                     /locus_tag="SB143_000873"
     CDS             complement(6764..9082)
                     /locus_tag="SB143_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEF9749423.1"
                     /translation="MQNLYSEDDTRVKLIDAKLYASSWSEENIIRNYYFTDGRKLIGN
                     KRAERKFADYLLKFQNNNLAIIEAKKQNKDALDGLSQGIEYAKTLNVPFVYSTNGDKI
                     YEYDLRVSRGEYIENFPSPNELFQRVYGNLKEWQYKLLTQRELYIPQKTLRYYQKIAV
                     DKVIEALINGKDRILLTLATGTGKTTIAFALCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNAVESDCKVISAEEIRKNDGKIITNANVFFGIYQSLAANSKDQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGNWACVLEHFSSATHLGLTATPKKSDN
                     VDTYRYFGESAYEYSLKEGIEDGFLTPYKVKRITTTLSEGYVYNPDDLIEGELEKGFY
                     KMSEFERNIHLPQYNDFLAKEILKLIDPMDKTIIFCANQAHASDIKRAIDKFKSVKRD
                     DYCVRVTSDEGKIGLEYLKQFQDNDKSYPVILTSSKMLTTGVDARNVRNIVLLANIGS
                     IIEFKQIIGRGTRVYEGKDFFTIIDFVGATKLFYDPKWDGEQVKDEDKEDKSEIWGKQ
                     NKKESDKTKETESKKAITVHLKGTKLKVLDINTSYLGSNGKPLSTKEFLEFLIGKLAE
                     YYDDEVKLREIWSKQETRLNFLKTLEKDGVDENALKDLGEIFDKKDCDIYDVLAHLSF
                     NAEIKTRQERVLQVEKSEFLKRFQKEKALKFIEFLLGRYQQYGIKDFDRSLAPLIELS
                     SLGNVKEIVSEFGGVENLKQSVDDLQREIYAR"
     gene            9217..10296
                     /locus_tag="SB143_000874"
     CDS             9217..10296
                     /locus_tag="SB143_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEF9749424.1"
                     /translation="MDSKIFLENGRIQSKGYAMLSKDAKFTPFEFTRHAVGDNDILIK
                     ILYAGICHSDIHTARSEWGEAVYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVN
                     SCGECEACKKSQEQFCEKGQTIYTYNSCDIFHDNENTYGGYSNNIVVSEKFAVCVPKD
                     APMEKVAPLLCAGITTYSPLKFSNIKAGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFA
                     RNENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYDPSAYMDLLKFGGEMAI
                     VGLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHKIYPETELITSK
                     DIDKAYENLTSGKAKFRYVIDMRDE"
     gene            complement(10297..10749)
                     /locus_tag="SB143_000875"
     CDS             complement(10297..10749)
                     /locus_tag="SB143_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEF9749425.1"
                     /translation="MIELIGDVNLEKYMGTWLEMARKPAFFQKSCVQSKAEYQLEYEG
                     STPVVNIKNICVKKDGEVSQVQGKAKVKSPRALSVKFSIFMNLFNKTNYEILFIDTNY
                     EVAVVGSPDKEYLWILSRKIIDKKEIDKLLDIAKQKGFDISDIVFDKY"
     gene            10873..12063
                     /locus_tag="SB143_000876"
     CDS             10873..12063
                     /locus_tag="SB143_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749426.1"
                     /translation="MQQSSITINNTYQIKILITLCLGVFGLISMELGVMGIIPLISEK
                     FGVSVSDAGWSVSIFALIVMCCAPIAPMLCANFNPKKLMLFCLAIFSLSSLASMFVND
                     FWLHLILRAIPAFFHPIYLALAFSTAANLADDKSKVPHIVAKIFMAISAGLVLGVPLS
                     SYFGGNFSFEMAMAFYVVINSLAFFITLFFMPEFKKTSRIKVGKQLLSLRYALLWISM
                     LAVFCISTGYVGFYSYYSEFLFSVSKMSFTNISLALFIYGFASIIGNNIAGKTLVNHS
                     NQTLIFASMAMILIYALIFVNAAQFAIMLTLSLILGIVNGVMNNAMHYIITFPFPRAK
                     DFTNGLFISVSNISISVGATLCGLVISIKETKYIAISSIIMVGLGLILVLVRMRLEDK
                     KLKI"
     gene            12080..12661
                     /locus_tag="SB143_000877"
     CDS             12080..12661
                     /locus_tag="SB143_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEF9749427.1"
                     /translation="MKNILLLNGAKSFGHSGGKLNDILHEVAKESLLNLGLKVDETYI
                     DKGYDIENEVAKILNADAIIYQMPGWWMGEPWIVKKYIDEVFTAGHGKFYANDGRSRE
                     DASKKYGSGGLVNNKKYMFSLTWNAPLEAFNDKDQFFEGVGVDGVYLHLHKANQFLGM
                     KPLPTFICNDVMKNPQVEKYIEDYKAHLQKVFS"
     gene            12795..13694
                     /locus_tag="SB143_000878"
     CDS             12795..13694
                     /locus_tag="SB143_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEF9749428.1"
                     /translation="MDRSKYLFILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLSFLKIPLRLEKNALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFVIAIFFQKDKKSTHKITKSEILGLFLGLISGLCLLNLGSMEELLGKFN
                     ALFLSCAFIWALMAVFTHKAKGTHPLAINFYINLMSLLMFSWVLFDLKSYEIFQFDFK
                     FWINLFVVAFLSTVVGTSIYYYGIHILGSVKANSFVLITPASALICSFFILDEVPTIL
                     TLIGCVLAIFAIYFINIYGKKKS"
     gene            complement(13691..>14110)
                     /locus_tag="SB143_000879"
     CDS             complement(13691..>14110)
                     /locus_tag="SB143_000879"
                     /inference="COORDINATES: protein motif:HMM:NF018937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1445 domain-containing protein"
                     /protein_id="HEF9749429.1"
                     /translation="EALLEKGLEIRHISNKCNVPMYKTNIACKSVGVFSGEMVVSMRP
                     FTPDNAKKAKEITANFPLVHGAPVQIGNAKEIGINNILKADFGDDPIIKEGEIPVFWA
                     CGVTPQNVIMKAKLPFVITHAPGHMFISDILNSSLKS"
BASE COUNT         4189 a         2250 c         2102 g         5569 t
ORIGIN      
        1 tttggagttt gtatgaattt agcatttagc tttttggcta aattttcact cacccaaatt
       61 ggcacgactt tatcgtcttt tgcgctgatg atgattttgt gaattatcat gttatcaagc
      121 tttttatagt ctaattttgg ctttataaaa tcatttaaaa taggcaattt tgccaaaggt
      181 tcatcaaagg gtgcaaccat tattacaccg ccgattttag tcctttcatc aagcgaattt
      241 aaaaaatcaa gcaccgcaac tccacctaaa gaatgcgtga taaaaaaggt attttcatca
      301 agttttgtga aattttgact catggtttgc atccactcat caagcttagg cgaaaaagca
      361 ttagggaaac ttaaaagtaa aacttcatga tttttagctt ttaaattctt tgctacactt
      421 ggtaaaaatc cgtaattctc atcgctgcca tagccatgca cgatataaat ttgcttagca
      481 aaaacaaagc taatgcaaag acaaagcaaa aagatgattt ttttcataag tgtcctttct
      541 aaaattcagt agtttagata atattttgta ttttttgcaa aagctcattg gctttttctt
      601 gatttgcctt taaagtactt aggatttctt ctacttcacg caaggttttt tcttccttgg
      661 aatttggatt tttagcactt agatcatagt ttctttcttc aagttctttt atgctaacta
      721 gataagaatg aggagtgatt tttctttcct tatagatttt taaaaattcc tcaaaatgtg
      781 cgtattctaa aggcttgttt ttggtgagtt taaaaggtgg tataagctca taataataca
      841 ccttatcatc ttcaccacaa atgcttcttt ttccttttga gaaaaaaagc acattggttt
      901 ttaccgcact ataaggtaaa aataccccgc ttggcaagct taaaacgcat tcgagattga
      961 aattttctag caagtctttt ttcacgctta caaaggcatt tgaattttga aaaagcacgc
     1021 cctcaggcac tattatagca catcttccgt tgttgtttaa agattttaag atatgttgta
     1081 aaaataaaag ctcagtagcg tttgatttta cgggaaagtt gttttgaatt tgttcttttt
     1141 ccttgcctcc aaagggtgga tttgccaaaa tcacttcata tttttcgctt tgggttatgt
     1201 ctgtgatttt tttatttaga gtgtttgttt tgatgatatt tggagatttt acctcgtgca
     1261 agatcatatt catcacgccc attgcgtagc ttagtggggt tttttctttg ccaaataatg
     1321 catcattttg taaaaattca agctcttcta cgcttaaatt tgcttttttg tttttattcc
     1381 tgtcttcata caagatatgc aaaaagcttt ctactaaaaa cccacaactc ccacaagcag
     1441 gatcataaat cctttctttt gctttaggat ctatcacttc taccatagct cttatcaaag
     1501 ggcgtggcgt gtaaaattct ccactatttc ccccatcgct tcccatatct tttaaaagct
     1561 tttcataaac ttcacctaag gcaaatacat cactttcttt actaaagctt agctcatcga
     1621 ctaaatttat aacctctctt aaggtgtgtc cattggctat gcgattgtct ataaactcga
     1681 aaattccgcc tattttatac tctatgcttt tgaaattttc attatcttta aagcttttta
     1741 gatatggaaa aagctcgtta tttacaaagc taagcaaatc atctccgctt aaagcatttt
     1801 ttacatcaag tttgccttca cttgtttttg gagctgccca tattctccag ctgaattttt
     1861 cttctaaaat gcttttatat gctttatcat ttaagatagc ttctagtttt aattcttctt
     1921 cataatcatc taaaaatttt aaaaacaata tccagctgat ttgctcacta tagtgcatcg
     1981 caccgcttat accatcatcg cgtcttagta tgtctgtgat tttgtcgatt ttattttgca
     2041 tttaaaaaat tcccttttta aaaagtctta aaagttctat atttatataa taatgatttc
     2101 tacctatttt aatgcattct aataccccta aattttcaca aattttaaga tattttgagg
     2161 cactttgcct agaaatattt aatttttcta tcaaaaaatc tatctttgta taaggatgag
     2221 aaaacaaaag ctctacaaag tctttactat aaaaattggt tttattttgc aaaatttcgc
     2281 ttacatttag catcattttt tctatcgtgg caatagtttc aatagttttt atagcagttt
     2341 gctctacgcc ttttagtatg tattctatcc attctaaaat cgctccttca tctcgcactt
     2401 tttgcaaaag actataatac tcccctttat tttttacaat ataagcactc aaatataaga
     2461 taggcaaatc aagcaagcct ttataaatca aataaagtat atttataatc ctgcctgttc
     2521 tgccattgcc atcataaaat ggatgaatgc tttcaaattg ataatgaatg attgccattt
     2581 ttactaaaaa atctagttca tctaaagtat catcgttaat gtattgctct aaatttctca
     2641 taagctcttg tatgtcgcta tgattttgtg ggggtatgtg tttgatttct cctgtgatag
     2701 ggtttttaag cattgtgcca ctttgttttc taaagcctgc attgtttctt tctaatcttt
     2761 tttgaatttc taaaatatgt gcatttctca acaaacgctc tttttttaaa agctcatacc
     2821 cttttttcaa agcattttca tagtctttta cttcttttgc tgctcttgta agtttgcttt
     2881 catcgatttg agataaaaaa agctcatcat gtgttgtgat tatgttttct atctcacttg
     2941 aatcttttgc ttcttgcaaa attaaagcat tgattaaaat gtttggatta gggatacttt
     3001 tgctaagtcc atttaactct gctaattttc tagaagcttt aatgataaga ctataaatat
     3061 ttgcatttaa ttctatattt aaaggcaatt tttgaggtat aaattctttc ataattttcc
     3121 aatatgttaa ttttttctaa aaattttaac attataaaaa aatatgttaa aaaaatcaaa
     3181 aatttttaac atattaagcc aatgtgttaa aatttggcaa attttttaac attataattc
     3241 tcccttaaaa gctttattaa gcaaggattg cttaagctct tcataatctt ttagttcttt
     3301 agtgtaaagc tcttttaaag cctttgtctt ttcaaagaca aaatctaaat gctttgcgat
     3361 ttgctcttgc tctttgagtg ggggtagggg gatttgtagg gatttaaatt ttggtatagt
     3421 aagttgcgga atactagaac cttcaccttt tgctataaaa aaattcaaac aaaaatataa
     3481 ataatgtaag cataatatat tttcacaagg aattaaagaa ataagcctta caataggaaa
     3541 ataaggttct tttctaatgc aaacaaaacc tattgttcct ctagcagata tagttaaaga
     3601 aggttttata atggtagctt tatctgtata tccaactaaa ccattattat ttacaccatt
     3661 tgcataaaca gggatttgat ttttggcagt tttactttct gtgcagtttt ttggcttatc
     3721 tccacccgca gaaatatttt cgctaatctc ttctaagctt ttccattccc aagattgtgg
     3781 gagtttatag ttttctttag cattgtcttt taatggattg aaagcttttt gcaaggcgct
     3841 ttgcattaac tcatctaaat ttagcaaatt ctgctctaag atttttatac tctcatctat
     3901 ctttgcaaaa ctctcatcta aaattcccac tatcctttct tgctctttga gcggcggtag
     3961 tgggatttga atttgtttta atcttgtaat tgccaatttt ggttgagcaa ctatttttgt
     4021 agaagtttgt atttgtgttt taaatatatt tgataatgta aaaaaataca taaatttatt
     4081 ggaaatattg ttttgaatat attctagctt tacagcattt tctgttagaa tagctccgtt
     4141 taattctttg gggataatac cgctttttcc aatagttcca gcaatgctaa tatatagatt
     4201 atcatcataa attttataat tttttaaaac attgtaagtg ttttcattga taaatttaat
     4261 attttgtaaa tttatagtcc cattgtcctg aaaatccgca actcttatat aagtaaattt
     4321 tgtattattg tctaataaat tttcaccctt gggaagtctt ttacctcctt tgatatttgc
     4381 aatttcttca agctttttaa cttcccaacc ctgtggtaaa tttgtcattt tattttgcat
     4441 tgtcattttc ttctatatca aggcttttta ataatgcctc aaattgttct ttgtctttat
     4501 ttttaatatt ttcaataata atattaacaa ctttatgtat ttctaataaa tctaaaggca
     4561 ttttggctct ttcaatattt tctaaatgag aaaattcgtt aattactcta ttaattaaaa
     4621 tagcattctc ttctccaaaa aaaatataat attttgtcat tagactatca ttatttggat
     4681 atttaaaata catataagta tctaaaaatt ttctaatatt atttgccaga ctataatatg
     4741 aatctatagt aatatttgtg ttgttatagt ttttaaaaat ttgctcaaat agataattaa
     4801 attcagttac atacttacga atataatcag gtaaaatttt aatatcacta ttgtttgttt
     4861 tttctatcaa atacataaaa ctttttttat catttttatc gtatcctgtt aaacttttta
     4921 ggtattttag aaaatctaaa ttatgcgttg atataaaaag ttgagaatat ttgttatctt
     4981 taatcttttt tgcaatttta gcttctatta aagagaagat aaaaaatata tgattgttat
     5041 caagactaga gataggatcg tctatccata ttataggatt tttatctttg gtgtttgcat
     5101 cttctaaact tgctacaaaa tagcaaaagg ctaccaagct acactcaccc tcgcttaaat
     5161 tcttagcttg cttgccattt cttaaaattt caaattctcc atttaattgt cctttgtcat
     5221 ctttttttgc ttttaactct agcatattat gcccaaaata tgattttaaa tatttgttta
     5281 tattgcttgt agaggtttct agattactaa gtttttcttt atatttttct atttcaaggt
     5341 tgtagttatt tatttcattt ttttctgtct caatagtact ttgcatattg cttagttttt
     5401 ggcctaagtt tttaatttca tcttgtttag caaaacaatc actatcttta gcaaattttg
     5461 ctacttcatt tagtcttagt ttttttcttg cttcatcttg ctttgataat aaattttttg
     5521 cgtattcgtt attttcttta cataaatttt caattttatt taatatctgc aatatctcat
     5581 ctgaaaaatc atttatgttt tctaatttta taggagtaaa aacatctttt ttcttttttg
     5641 ttaatttttt ttctattttt aacaactctt cgttgtaatt tgcaatactt actcctagct
     5701 gttctttcaa gccaataaaa atatctttat agttagaata aaaattttca tattcaatac
     5761 ctagcaataa tttttttgat tctagcttat agctttcaaa attatctagt aaatctttta
     5821 attctttttc aatttgttct ttttctccgc tatcatcttt tatgttattt tcaatccaag
     5881 ctattctttc tagtgttaaa gggttattgc aaaatttaca ttgctgtgta aatgaatgct
     5941 ctttgtgaaa ttccaaaccc tcttctagcc attttctcaa ttcgcttgtt aaattttctt
     6001 taatgataac ttctttttca agaatcttta atgaatatgt gaaaatacct tgaaaattat
     6061 ctttattaaa agtatttttg aaaattatat tttgtttttc tttatcttct aagattttta
     6121 taagttgatt ttgttcttca ttgttaagaa tataagcatt tatattatct ttaatttcta
     6181 ttaaatcatt ttctaaattt cttttatcat aattactgcc ctgttttatt aaatttggtt
     6241 cactttttac taacttagct ttatctataa gcttttcgtt taaagttttt attttggctt
     6301 gttgtgtttt agaaatattt tcccgattgg cttgtatatc ttttaatttt tcatttcttg
     6361 tttttaaaat ttcctttctt ttttcaatac tttcttttat atctttttgc tccacaccta
     6421 tacttttaaa accttttata ttcccttttt tatcatatag ataatttaaa ttttccttta
     6481 caaaatcact attataaact ctaatatcta gattagaatt tataacatca ttttgggtta
     6541 aaaaactacc atcttctagt tttattttaa aatttccatc taaaaaatct tcattatgtt
     6601 ttttaagctc aaagcttcta gctatccttg aaagtgtcgt tttacctgaa taatttctgc
     6661 cataaaaaat attgattgtt ttaaattctt caagaccatt atcccatgta aaattttcat
     6721 aagagccaaa atttatttta tcaaatttta agattttcat tttttacctc gcataaattt
     6781 ccctttgcaa atcatctacg ctttgcttta aattctccac cccgccaaat tcactgacta
     6841 tttcttttac attgcctaaa gagctaagct ctatcaaagg agccaagctt ctatcaaaat
     6901 cttttatgcc gtattgctga tatctaccga gtaaaaattc tatgaatttc agagcttttt
     6961 ctttttggaa gcgttttaaa aattcactct tttctacttg taaaacgcgt tcttgtcttg
     7021 ttttgatctc agcattaaaa ctcaaatgtg ccaaaacatc atatatatca caatcctttt
     7081 tatcaaaaat ttcacccaaa tctttcaagg cattttcatc cactccatct ttttcaaggg
     7141 tttttaagaa attcagccta gtttcttgct tgctccaaat ttcacgaagt tttacttcat
     7201 cgtcgtagta ttctgctagc ttgcctatca aaaattctaa aaattcttta gtgctaagtg
     7261 gtttgccatt acttcctaga tagcttgtgt ttatgtcaag cactttgagt tttgtgcctt
     7321 ttaaatgcac ggtgattgct tttttgcttt ctgtttcttt tgttttgtct gattcttttt
     7381 tattttgctt gccccaaatt tcgcttttat cttctttatc ttcatctttg acttgttcgc
     7441 catcccattt tggatcataa aataactttg tcgcacctac aaaatctatg atggtaaaaa
     7501 agtcttttcc ttcatacact ctagtgcctc gccctatgat ttgtttaaat tctatgatag
     7561 agcctatatt tgccaaaagt actatattgc ggacatttct agcatctacg cctgtggtta
     7621 gcattttaga gcttgtaagg attacaggat agcttttgtc attgtcttga aattgtttta
     7681 aatattcaag tcctatctta ccctcatcgc tcgtaactct tacacaataa tcatctcttt
     7741 taacactttt aaatttatca atagctcttt ttatatcgct tgcgtgagct tgattggcac
     7801 aaaagatgat ggttttatcc ataggatcta taagttttaa aatttcttta gctagaaaat
     7861 cattatattg aggtagatgg atatttcttt caaattcact cattttataa aatccttttt
     7921 ctagctctcc ttctatgaga tcatcaggat tatatacata gccttcgcta agtgtggtgg
     7981 tgatgcgttt taccttataa ggggttaaaa atccatcttc tataccctct tttaggctat
     8041 actcatacgc actttcacca aaatacctgt aagtgtctac attatcactc tttttaggtg
     8101 tggcagtaag tcctaaatga gtagctgatg aaaagtgctc tagtacgcac gcccagtttc
     8161 cttcttcgtt tgctccgcct ctgtgacact catcgatgat gataaggtca aaaaaatctt
     8221 ttgggtattg tagataaaat ttgctctctt gttcttcttg ggtattttct tgatctttag
     8281 aatttgcagc tagactttga taaattccaa agaaaacatt tgcgttggtg atgatttttc
     8341 catcattttt tctaatctct tctgcgctga ttactttaca atcgctttct actgcgttaa
     8401 attctcccaa agcttgatct cttaagctca ctctatcgca taaaaacaat attttaggtt
     8461 tttggtcttt gttttcttta ttccatcttg cttcaagcaa acgataacac aaagcaaaag
     8521 ctatagtcgt cttacctgtg ccggtagcaa gggtaagtaa aattctatct ttaccattga
     8581 ttaaagcttc tatgacttta tctacggcta ttttttggta gtatcttaat gttttttgag
     8641 gtatgtataa ttctctttga gttaaaagtt tgtattgcca ttcttttaaa tttccataaa
     8701 ctctttgaaa aagttcgtta gggcttggaa aattttctat atactcaccc cttgaaaccc
     8761 ttaaatcata ctcataaatt ttatcgccat tagtgctata aacaaaaggc acatttaaag
     8821 ttttagcgta ttctatacct tgagataagc catctaaggc gtctttgttt tgttttttag
     8881 cttctatgat ggcaagattg ttgttttgaa atttgagcaa ataatctgca aattttcttt
     8941 cagctctttt gttgcctatg agtttgcgtc catcggtgaa ataataattc cttatgatat
     9001 tttcttcact ccaagaacta gcataaagct ttgcgtctat aagcttaacc cttgtatcat
     9061 cttctgaata taaattttgc atttttaccc caaagtgaaa ttaaattttg taattataac
     9121 atttataata atttttttaa aaaatttaat ttcccccttg acttatagct actctaatgt
     9181 tttataattt caaaaatcaa aaaataagga gagaaaatgg actctaaaat ctttttagaa
     9241 aatggtcgca ttcaaagcaa gggctatgct atgcttagca aagatgcgaa attcacaccc
     9301 tttgaattca cacgccacgc tgtgggtgat aatgatattt tgattaaaat tttatacgca
     9361 ggaatttgtc atagcgacat ccacactgca agaagcgagt ggggagaagc tgtgtatcct
     9421 tgtgtgccag ggcatgagat agcaggagaa gtgatcgcag tgggtaaaaa tgtgagcaaa
     9481 tttaaagtag gggattatgc aggggttggc tgtatggtaa attcatgcgg agaatgcgaa
     9541 gcatgcaaaa aatcccaaga gcaattttgc gaaaaaggac aaaccatcta tacttacaat
     9601 agctgcgata tttttcatga taatgaaaac acctatggag gctactcaaa caacatagtc
     9661 gtaagtgaaa aatttgctgt ttgtgtgcca aaagatgcac cgatggaaaa agtcgcgcct
     9721 ttgctttgtg caggaattac cacttattct ccgcttaaat tttcaaacat taaagctggc
     9781 tcaagcgtag cagtagcagg atttggcgga cttggtatga tggcggttaa atatgctgtg
     9841 aaaatgggtg caaaagtaag tgtttttgct agaaatgaaa acaaaaaagc cgatgctttg
     9901 gctatgggcg tgagttcttt ttatacaagc acagataaaa atgctgtaaa agaacgcttt
     9961 gatcttatca tttctaccat cccaactcct tatgatccta gtgcttatat ggatttgctt
    10021 aaatttggcg gtgaaatggc gatagtgggt ttgccacctc acgaagttgc tccaagtatc
    10081 agcgtgataa cctttgtgca taaagcgggt aaaaaagtct atggttcact aatcggcgga
    10141 atcgcagaaa ctcaagaaat gcttgatttt tctttaaaac ataaaattta ccctgaaacc
    10201 gaactcatca cttcaaaaga tatcgacaaa gcttatgaaa atctcacttc aggaaaagca
    10261 aaattccgct atgtgatcga tatgagagat gagtaattaa tacttatcaa aaactatatc
    10321 gctaatgtca aaaccttttt gcttagcgat atctaaaagt ttatctatct cttttttatc
    10381 gatgattttt ctagataaaa tccaaagata ctctttatca ggacttccaa cgacagcgac
    10441 ttcatagttt gtgtctataa agagaatttc ataatttgtt ttattaaata aattcataaa
    10501 aatgctaaat ttcaccgata aagctcttgg ggattttact ttggctttgc cttgtacttg
    10561 cgaaacctct ccatcttttt taacacagat attttttata tttacaacag gggtagagcc
    10621 ttcgtattct agttgatatt cagctttaga ctgaacgcaa gatttttgaa aaaatgcagg
    10681 ttttctagcc atttcaagcc aagttcccat atatttttct aaattaacat ctcctataag
    10741 ttctatcatg atatcctcct tttgtttttt gaaatattct ttatatctga ttaaatcatc
    10801 actttatgta ttgacattat aacttgcata aattaaaatt gcgagtttaa tttttcgaaa
    10861 aaggtttttt taatgcaaca atcaagtata actataaaca atacttatca aatcaagatc
    10921 ttaatcacgc tttgtctagg tgtgtttggg cttatcagta tggagcttgg ggtgatgggg
    10981 atcataccgc ttatatcgga gaaatttggc gtgagtgtta gtgatgcggg gtggagtgtg
    11041 agtatatttg cacttattgt aatgtgctgt gcgcctatag cacctatgct ttgtgcgaat
    11101 tttaatccta aaaagcttat gttattttgc ttggctattt tttctcttag ctctttggca
    11161 agcatgtttg taaatgattt ttggcttcat ttgatcttaa gagctatccc tgcttttttt
    11221 catcctattt atcttgcact tgcttttagc acagccgcaa atttagcaga tgataaaagt
    11281 aaagtacccc atatagtcgc aaagattttt atggctatta gcgcaggttt ggttcttggt
    11341 gtgcccctta gtagttattt tggtgggaat tttagctttg aaatggcgat ggctttttat
    11401 gtggtgatca attctttagc gttttttatc actttgtttt ttatgcctga atttaaaaag
    11461 acaagtagga taaaggtagg aaaacagctt ttaagtctaa gatatgcgct tttgtggatt
    11521 tctatgcttg ctgttttttg tatttcgact ggatatgtag gattttattc ttattattct
    11581 gaatttttat ttagcgtgag taaaatgagc tttacaaata tcagtttagc actttttatt
    11641 tatggttttg caagtattat tggtaataat atcgcaggaa aaactttagt caatcactca
    11701 aatcaaacgc ttatatttgc ttctatggca atgattttga tatatgcttt gatttttgta
    11761 aatgcagcgc aatttgcaat catgcttaca ttaagtttga ttttgggaat tgtaaatggg
    11821 gttatgaata atgcaatgca ttatatcatc acttttcctt tccctagggc aaaagatttt
    11881 accaatgggc tttttataag tgtttcaaat atttctatca gcgtaggtgc tactctttgt
    11941 ggcttagtca tttctataaa agaaactaaa tacattgcga taagttctat catcatggtg
    12001 ggcttagggc ttattttggt attggttaga atgagattag aagataaaaa attaaaaatt
    12061 taattataaa ggagaaaaga tgaaaaatat acttttatta aatggagcaa aaagtttcgg
    12121 acattcaggc ggcaagctca atgatatttt gcacgaagtg gcaaaagaaa gccttttgaa
    12181 tttgggatta aaggtcgatg aaacctatat cgataaggga tatgatatag aaaatgaagt
    12241 tgcaaagata cttaatgctg atgcgatcat ctatcaaatg ccaggatggt ggatgggtga
    12301 gccttggata gtgaaaaaat acattgatga ggtttttact gcagggcatg gaaaatttta
    12361 tgcaaacgat ggtagaagta gagaagatgc aagtaaaaaa tatggcagcg gcggacttgt
    12421 aaataataaa aaatatatgt ttagccttac ttggaatgca ccacttgaag cctttaatga
    12481 taaagatcag ttttttgaag gtgtgggcgt agatggagtg tatttgcatt tacacaaagc
    12541 aaatcagttt ttaggtatga agcctttgcc gacttttatt tgcaatgatg tgatgaaaaa
    12601 tccacaagta gaaaaataca tcgaggatta taaagcgcat ttgcaaaaag tgtttagcta
    12661 agctaaatag caaatgtaaa atttgcacca tttcatagat gattttaaat aaacattaat
    12721 tcatgctggg ttattattta acctagcatt ttgatatcat aaaaacattc ttatttattt
    12781 caaaggtagt ataaatggat cgttcaaaat atttatttat cttgcttgtt attgctatgt
    12841 ttttatgggg ttcttcatgg ccgacatcta agattttggc gaactataca gatacttcta
    12901 ttattacctt ctggcgtttt ttctttgttg tattgggttc attttttgtt ttaagctttt
    12961 taaaaattcc tcttagactt gaaaaaaatg ctttaaaatg ggtcttgata gcaggagttt
    13021 taaatggact ttatgccttt gtatttttta tcgctataaa gcatggttta gcaggtaaag
    13081 gaggggtttt agtaaccact atgatcccta tattttctta tttgatattt gtgatagcga
    13141 tattctttca aaaagataaa aaatcaactc acaagatcac aaagagtgaa attctaggct
    13201 tatttttggg tttgatttca gggctttgtt tgctaaattt aggctctatg gaagagcttt
    13261 tgggtaagtt taatgctttg tttttaagct gtgcttttat atgggcttta atggctgttt
    13321 ttactcataa agcaaaagga actcatcctt tggcgatcaa tttttatatc aatcttatgt
    13381 cattattgat gttttcatgg gtgttgtttg atcttaaaag ttatgagatc tttcaatttg
    13441 attttaaatt ttggatcaat ctttttgtgg tggctttttt atctacggtg gtaggtacga
    13501 gtatatatta ttatggaatt catattttag gaagtgtaaa agcaaattct tttgttttaa
    13561 tcactcctgc aagtgctttg atttgtagct tttttatctt agatgaagtg cctactatac
    13621 ttactttaat aggctgtgtt ttagcgattt ttgctatata ttttatcaat atttatggca
    13681 agaaaaaatc ctaagatttt aaagatgaat ttaaaatatc gcttataaac atatgccctg
    13741 gcgcatgggt aatcacaaaa ggcaattttg ctttcattat cacattttgt ggagttactc
    13801 cgcaagccca aaatacagga atttcgcctt cttttataat aggatcatca ccaaaatcag
    13861 cttttaaaat attatttata ccaatttcct tagcattgcc aatttgcaca ggagctccgt
    13921 gaaccaaagg aaaattagca gtgatttctt tagctttttt ggcattatca ggagtaaagg
    13981 gacgcatgga aacaaccatt tcaccgctaa aaactcctac acttttgcaa gcaatattgg
    14041 ttttatacat tggcacattg catttattgc taatatgtct tatttctaag cctttttcaa
    14101 gtaaagcttc
//
LOCUS       DARAII010000036        13984 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.036, whole genome shotgun sequence.
ACCESSION   DARAII010000036 DARAII010000000
VERSION     DARAII010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13984
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.036"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..2582)
                     /locus_tag="SB143_000880"
     CDS             complement(<1..2582)
                     /locus_tag="SB143_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEF9749430.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAS
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLVGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFISSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFSDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDNLFN
                     PDVIISDDKDIYKKNIKQASWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYL
                     PKVNDYELKSRKRAYNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIAPKLRIDKINENVGLYIMCAARKLGLNENIIKLAKLCTNGKVLIDNDTYC
                     CGFAG"
     gene            2735..3157
                     /gene="cgb"
                     /locus_tag="SB143_000881"
     CDS             2735..3157
                     /gene="cgb"
                     /locus_tag="SB143_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEF9749431.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAKFYIDIEKKLYDK"
     gene            complement(3177..4808)
                     /locus_tag="SB143_000882"
     CDS             complement(3177..4808)
                     /locus_tag="SB143_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEF9749432.1"
                     /translation="MPFILELLKQNKFKFISFLIFSFITSAVGVLTLVFINDYLLKNT
                     QNIPILYFIALLIVFFLSSTIVELGLSVFGQNFIFKMQRRVVKQILDTPLLKVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSAYLCYLSPQIFTLCAIWIIVVFT
                     INNFLMMKVYAYFRKARENDDALQNNYQNILDGHKELLINRYRAKLYYEDEFESNARS
                     KKKNSTLGNLFNNLSSNFTNVALLALVGVEFYLALEFKWASVAEATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYKEHFEKTNFIKDWRQISFKNTSFSYDDNF
                     HLNPVNLDLKKGELIFLIGKNGSGKSTFCMLLTGLFKPSEGEIFVDDMKIDDDNLDVY
                     RSLVSAVFSDFHLFTKTLAKEKFADEEKIASWLEFLELKGKTRVEDHELVLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(4856..6163)
                     /locus_tag="SB143_000883"
     CDS             complement(4856..6163)
                     /locus_tag="SB143_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749433.1"
                     /translation="MKKSKLGTKEFKILGLSSLGGTLEFYDFIIFVFFAEYIAKVFFP
                     KDMSEFWTLLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFTLA
                     FIPGYETLGFLAPFLLILIRIFQGIAIGGELPGAWVFVREHCKEDQKAFSLSCLNSAM
                     ALGILLGSMVFLLINAFFSTEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPIFKQM
                     QKERSLSAFPLKDLFKEKNIFKNMLASIFITWVLTGCVVVLILLMPKFMPSILGLSAI
                     EGSYLQVLGILGITLGGVFMGYLVDKLGLFKICIFFSLVFAFFSCLYFYALYDLKNLV
                     LTCILYTSVCFLGGINVFAPILMSEVFRAKIRFSGISLSYNIAYAIAGGVTPQLIFWL
                     NTLATRGENPFLYGMSIYMIFLALLAICAVFLVKDKINFDNRS"
     gene            6477..6692
                     /locus_tag="SB143_000884"
     CDS             6477..6692
                     /locus_tag="SB143_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749434.1"
                     /translation="MIIVGILGLIISTAVLLTCGVFWVLFGIVFWGVILAFMLLDLSG
                     SYGMVALYILFIVLNLVLIYKIIRRKK"
     gene            6689..7123
                     /locus_tag="SB143_000885"
     CDS             6689..7123
                     /locus_tag="SB143_000885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749435.1"
                     /translation="MKKLALALGGIALGACGEKIYKGIKNTWDKLIFKDLITLRKVIK
                     QYEEIEQIYPSYLNDPKFLEFRKTHKYDAEAIHNIKDHLFSDLKKEKLIQIGTTMEAF
                     MEYSDKYLQDDITALKISWRFCAIRLKFDSALLQLQDINKIV"
     gene            7385..7543
                     /locus_tag="SB143_000886"
     CDS             7385..7543
                     /locus_tag="SB143_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749436.1"
                     /translation="MISKTFMPMFLISRLYFTLKEEKLDIQIRKILKEKDELAEEKSL
                     WISKVLPF"
     gene            7624..7776
                     /locus_tag="SB143_000887"
     CDS             7624..7776
                     /locus_tag="SB143_000887"
                     /inference="COORDINATES: protein motif:HMM:NF024499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
                     /protein_id="HEF9749437.1"
                     /translation="MAYKVDNDLEFLRELNDESLDNLVSILIKDENGKTRTTESLTNK
                     DLYKKH"
     gene            7802..9394
                     /locus_tag="SB143_000888"
     CDS             7802..9394
                     /locus_tag="SB143_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosome-binding GTPase"
                     /protein_id="HEF9749438.1"
                     /translation="MILEELQTFGGNTFANKIRGTGVVYKEILCDVADNLKVKYDKSA
                     SIENIEKAILLNSFNKSLENLSESDLKEIAKDFSIDVNTYTIESISNAIAKTNNLKLL
                     YQIAMLVVNAIASKVAINTAIFTTSSLIAGSGLVGSAAISGVLGSTATFLGSRAVGTL
                     AGPIGMIISSAWMINDIAGPAFRVTVPAVIYVAFLRRQFLYEKEMIKQMEAEQKEKVS
                     NLNKGKKYSATELFNQELNILIVGGTGAGKSSTIKALFETEGYNLDIEINSGGKPVTQ
                     EIKEYKLGNLTIYDSPGLGDSGENDNEHMKKIKNLLLEKDSKGNAKIDLVLVVVAATV
                     GRDLESTYKTIKEAIMPYMEEKERILIALNKCDKAGADEDIEFDKENNQLTPELEEIL
                     EEQVKAIKERIKTDTGVDVDVIYYAAGSTSKKTKIKKPAYNLNKLLAYIVAKAPLKKR
                     LVFLKHQSRNQDDFKYGDNKENYTEEMVKSFIETIKEYAKNVSDFIIEVKNFFTSDKG
                     KEVVGVVKDVFEGIVSIFGKRK"
     gene            9394..9696
                     /locus_tag="SB143_000889"
     CDS             9394..9696
                     /locus_tag="SB143_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749439.1"
                     /translation="MFSKILSALSLANSFKAMIFKRLSSPVQSAYLGSLVWDIINILN
                     RDQQDSEKICQILDLLSDFKNKHPEDFDKIVDILKEILDEYEKNPSEVKKNLKELF"
     gene            9698..10814
                     /locus_tag="SB143_000890"
                     /pseudo
     CDS             9698..10814
                     /locus_tag="SB143_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779549.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            10989..11849
                     /locus_tag="SB143_000891"
     CDS             10989..11849
                     /locus_tag="SB143_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEF9749440.1"
                     /translation="MSHDKLAVRLAQILMRFNNGGRFSLEELASEFNVDVRTIQRDLN
                     QRLSFMPIKKENGKYFLESFALGKLSVKDIQNFAMLSGIQELYPKLDEDFITDLLNSK
                     VNSIFMIKNNGFEKVDYENFKIISVAILKHNILNFNYKEKSREVKPYKLLNYQGIWYL
                     IADEKDKLKHFTFSKIKNIRKNDEIFTPKEEFLDQILNDKNIWLDDSKEAIVKLDKKA
                     KEYFFRKNILNNFELIDEDEQSYTLKVYFSYDDELLNVVKQWIPYMKIEKPFELKEKL
                     DSILKDYLEN"
     gene            11915..12133
                     /gene="infA"
                     /locus_tag="SB143_000892"
     CDS             11915..12133
                     /gene="infA"
                     /locus_tag="SB143_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEF9749441.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            12304..12417
                     /gene="rpmJ"
                     /locus_tag="SB143_000893"
     CDS             12304..12417
                     /gene="rpmJ"
                     /locus_tag="SB143_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEF9749442.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            12420..12785
                     /gene="rpsM"
                     /locus_tag="SB143_000894"
     CDS             12420..12785
                     /gene="rpsM"
                     /locus_tag="SB143_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEF9749443.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            12795..13187
                     /gene="rpsK"
                     /locus_tag="SB143_000895"
     CDS             12795..13187
                     /gene="rpsK"
                     /locus_tag="SB143_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEF9749444.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            13217..13843
                     /gene="rpsD"
                     /locus_tag="SB143_000896"
     CDS             13217..13843
                     /gene="rpsD"
                     /locus_tag="SB143_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEF9749445.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARRDGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHILVNGKRVDIPSFRVEAGAKIEVIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVIIPVEERFIVELYSK"
     gene            13857..>13984
                     /locus_tag="SB143_000897"
     CDS             13857..>13984
                     /locus_tag="SB143_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEF9749446.1"
                     /translation="MRNITTSAYTPTEFTIENISDSVAKISAWPFEIGYGITLAHP"
BASE COUNT         5415 a         2053 c         2092 g         4424 t
ORIGIN      
        1 ccagcaaacc cgcaacaata ggtatcatta tctattaata cttttccatt cgtgcatagc
       61 tttgcaagct tgattatatt ttcatttaaa ccaagctttc tagcagcaca catgatatat
      121 aatcctacat tctcattgat tttatcaatg cgtaacttag gagcaataaa ttttaataaa
      181 tactcgctta aatcataaat ttcatacttt gaatgatcgc taattaactt agcactacaa
      241 gcactatgat ctaacactat gggcgagtct atattgctta aaaaatcatt gattttttgt
      301 atatttttat cttggatatc ttgaaaattc tcataagcct taccacaaca taaatcattg
      361 ggtgcataaa taatgcctat atttgctttt ttacacaagc tctcaaatac ttcttgcaaa
      421 cttcttttat catgcatttt ttcatttggt ttaaagcttt tattaagaca gcttgtaaaa
      481 taaaccacat tataagctct tttacgactt tttaactcat aatcattcac cttaggcaaa
      541 tacgccctag ttcttggtat aatgctaaga aaattgcttg ctttttcgag cttattatca
      601 agacttaaat tatcaaattt atttgcgata cttaatgaaa atttagcaat ttttagagtt
      661 ttttcatgat ttttatatgc tagatttcct aaaattttag atataaatcc tatattattt
      721 tttctatatt ttaatgaaaa atcagcaaaa ttaatcccca aaggacatga aaaagagcac
      781 accccacaag cagcacaaga gctgtctact aaatgattgt aatatttttt aatatccttt
      841 aattttgctt ttgactcatc atcatttaag ctttcaaggc gtttgatctc tcgtaagatc
      901 gcaattcttt gtcttggagt aattgtatat tcatttgatg gacaaaatct ttcgcaaaat
      961 ccacattcca tacaggtatt taatttctca tcaatccaac tggcttgttt gatatttttc
     1021 ttataaatat ctttatcatc gctaatgatt acatcaggat taaataaatt atccttatca
     1081 aagatacttt tgattttttt attaatcaaa taagcttgct taccccactc tacctccaca
     1141 aaaggtgcca ccatacgccc tgtgccgtgt tcagctttta tacttccacc ataagaagct
     1201 actatattag acatttcttt aactagattt gaaaaattat caaattcaag cttattgttt
     1261 aaatccggtg tgataataaa atggatattg cctgctaatg catggccaaa aatgattcca
     1321 ttatcactaa aaccatattt ataaaacaat tcttgaatgc ttttaattcc atcagctaaa
     1381 tcctcgatat taaaacacac atcttcagta attaccgttg agcctgcctt tctaagacta
     1441 gctgctatag gcaagagtgc ttttctaatc ttccaccata aatcatattc ggccttattc
     1501 ttactaaaat atgacttata agctagtttg gaaatttctt ttattttatt tatattttca
     1561 tcaagcttaa gctcattact atgctcactt tggatcaata cacaagtatt accctcttta
     1621 atatcagcta aaatatctct taactcatca taagttgatg cagcttttaa acttgcatag
     1681 tccattattt cagcagaact tataaaatca actttagcaa attcttttat agtgtttgca
     1741 gcattattga tattatcaaa aaacaataaa gcacaggcct taaattccaa atcatccaaa
     1801 acagcaagct taacttcgct tacaaatccc aaagtccctt cagagccaac aagtaagtgt
     1861 gctaaaatgt ctatttcatc atcataatca acaaaggcat taaggctata acctgtggtg
     1921 tttttgattt taaatttttt gattattaaa tcttttaatt ctttattagc attaatctct
     1981 tctttgatct ctctaagttc attaattaat tttttatttt catctttaaa tcgagccaca
     2041 cttaaagcat cgctggtatc aagcatacta ccatttgcca aaatcaccct aatacttctt
     2101 aaggttttat agctattatc cttagttcca cagcacattc cgcttgagtt gttatttata
     2161 atccctccaa ttaaagctga atttatagta gctggatcag gtcctatttt tttcttcaaa
     2221 aaagcaagac tttcattagc atgaatgcct actacaccac atcctaaagt aatttcgcta
     2281 gcgtctttgt taatttttat ttttttaaag gcaaatttaa tcactacaag cactccatcg
     2341 caagagcttt gtccacttaa acttgtacct gctgctctaa atgttatagg agttttataa
     2401 gtatttgcta attgaataat ttgcttaatt tcatcttcat ttttagcaat aatcactatt
     2461 tttggaatat aaaaataaca tgacgcatca atgccataag cataacatct agcataatca
     2521 ttaaagattc tatccttaaa aatatactta gcctcattat aaaaagcttt aaaatttgcc
     2581 atagtccctc tttttaattt attatcaatt atataattta ataatttaaa gataatttta
     2641 aatttatatt tttgagcata attttaacac aagtcaattt ttttctcctt tttaagatat
     2701 aaaatatctc ttttacaaca aaaaaggaga aactatgaca aaagaacaaa ttcaaatcat
     2761 caaagattgt gtgcctattt tgcaaaaaaa tggagaggat ttaaccaatg agttttataa
     2821 aataatgttt aatgattatc ctgaggtaaa acctatgttt aatatggaaa aacaaatttc
     2881 aggagaacaa ccaaaagctt tagcgatggc gattttaatg gcagccaaaa atatagaaaa
     2941 tttggaaaat atgagaagct ttgttgataa agttgccata actcatgtta atttaggagt
     3001 taaagaagag cattatccta tagttggagc ttgcctttta aaggctatta aaaatctttt
     3061 aaatcctgat gaagccactc ttaaagcttg ggaagttgct tatggaaaaa ttgctaaatt
     3121 ttatatcgat atagaaaaaa agctctatga taaataatat aagcccattt tgggctttaa
     3181 tcaaattttt ctactaaatt tttagctaat tcctttatat tctcaccctt taattcgctg
     3241 atttcaccat tttgagccaa gaaaattcta tcagcactat caaaatacgc atcatcgtga
     3301 gtgattgcaa aaatcgtctt accctgttct tttagcaaag gtaaaagttt tttgtaaaaa
     3361 aatcttctaa aaactggatc ttgatctgcc gcccattcat caagcactaa aatatctctt
     3421 tcttcaagca aggctatgag cattgccaaa cgcttttttt gtcctgtaga aagcttggtt
     3481 aatacaagtt cgtgatcttc tactctagtt ttacccttaa gctctaaaaa ttcaagccaa
     3541 gaagcgattt tttcttcatc tgcaaatttc tctttagcta aagtcttagt aaagagatga
     3601 aaatcactaa acacagccga tactaaagat ctataaacat ctaaattatc atcatcaatt
     3661 ttcatatcat ctacaaaaat ttcaccctcg cttggcttaa aaagacctgt taaaagcata
     3721 caaaaagtag atttcccgct tccgtttttt cctattaaaa atatcaattc tcccttttta
     3781 agatccaaat ttacaggatt tagatgaaaa ttatcatcat aagaaaaact cgtattttta
     3841 aaagaaattt gacgccaatc cttgataaaa ttggtttttt caaaatgctc tttatagtca
     3901 tcaagttcta gttttgctat cttatctaga gcgatttttg ccaaaagcaa agtaggaaaa
     3961 gatcctatca tcgaaaccaa aggggttctt aaaaataaaa ttgacaatgc tatcgttgtc
     4021 gcttcagcta cactcgccca tttaaattct aaggccaaat aaaattccac ccctactaaa
     4081 gctagaagtg ctacattggt aaaattggat gaaagattat taaaaagatt gcctagggta
     4141 ctatttttct ttttagatct tgcattgctt tcaaattcat cctcataata aagcttagca
     4201 cggtagcgat tgattaaaag ctctttatgg ccatctaata tattttgata attattttgc
     4261 aaggcatcat cattttctct tgctttacga aaatacgcat aaactttcat catcaaaaaa
     4321 ttattaatag taaaaaccac aataatccaa atcgcacaaa gggtaaaaat ttgaggtgaa
     4381 agataacaca aataagcgct agtacaaagt atcaatatgc ttgattgtaa gaaatcaggt
     4441 aatcttaaaa gtccaaaaga tatatttctc acatcacttc ctaaagaagc tagaattctt
     4501 gccttgccca cttttgcaac ttttaacaaa ggagtatcta agatctgttt taccacgcgt
     4561 ctttgcatct taaaaatgaa attttgacca aaaacactta atcctaactc tactatggta
     4621 gagctaagaa aaaatactat aagcaaagcg ataaagtata aaataggaat attttgtgta
     4681 tttttaagta aataatcatt gataaagact agggttaaaa cccctacagc gcttgtaata
     4741 aaagaaaaaa tcaaaaaaga gatgaattta aatttatttt gtttaagcaa ttctaaaata
     4801 aaaggcattg ataaaaactc cgaaagtata attaaaaaaa attaattata gcattttaag
     4861 agcgattatc aaaatttatt ttatccttta caagaaaaac agcacaaata gccaataaag
     4921 ctagaaaaat catatatata ctcattccat ataaaaatgg attttcgcct ctagtagcaa
     4981 gagtattgag ccaaaaaata agctgaggag taacccctcc tgcgatagca taagcgatat
     5041 tatacgacaa ggaaattcct gaaaatctta ttttagctct aaaaacttca ctcattaaaa
     5101 taggagcaaa gacattaatc ccacctaaaa aacaaacact tgtatataaa atacaggtta
     5161 agacaagatt tttaagatca tataaagcat aaaaatacaa gcaagaaaaa aatgcaaaaa
     5221 ctaaagaaaa gaaaatgcaa attttaaaca aacctaattt atccacaaga tagcccataa
     5281 acactccacc tagtgttata cctaaaattc ctaaaacttg taaataactt ccttcaatcg
     5341 cactcaaacc caaaatactt ggcataaatt taggcatcag taagataagc actacaacac
     5401 aacctgttaa aacccaagtt ataaagatag atgcgagcat atttttgaaa atattttttt
     5461 ctttaaacaa atccttaagt ggaaaagcac tcaaactccg ttctttttgc atttgtttaa
     5521 aaataggagt ttcttgtaaa aatctacgca aataaataga aataatccca aaaattccac
     5581 ccacaaaaaa agcgatacgc catgcataag ctgcgatttc ttcggtgcta aaaaaagcat
     5641 tgatcagtaa aaataccata cttcctagta aaattcccaa agccatagcc gaatttaaac
     5701 aactcaaaga aaaagccttt tgatcttctt tgcaatgttc tcttacaaaa acccaagcac
     5761 caggtaattc tccgcctata gcaatacctt gaaaaattct tataagtata agtaaaaacg
     5821 gtgctaagaa accaagagtt tcataaccag gtataaaagc caatgtaaaa gtaggaagca
     5881 ccataagtaa aatacttaac ataaacatat ttttacgccc aaatttatca ccaaaatgcg
     5941 ccatcactat accacctaaa gggcgtgcta aataacctgc agcaaaagct ccataagtat
     6001 ttaacaaagt ccaaaattca ctcatatctt taggaaaaaa tacttttgcg atatattcag
     6061 caaaaaatac aaagatgata aaatcataaa attctaaagt tccacctagc gacgaaagtc
     6121 ctaaaatttt aaattctttt gtacctagtt ttgatttttt cattatttta taccttaaag
     6181 aattttaaaa ataaccatta tactacaaat atttataaaa caaacaatcc ttttcaattt
     6241 aatttaactc attttgatga taaaaatcat aaaaatcagc ttaagcaaaa tttttaataa
     6301 tttttcaaaa aaacgacaca agctgtcata agaatacttt atactttttt ttgaaattaa
     6361 aatcaaggaa aaaaatgcaa acccgagctt taaaaacccc aaatactttt tacaagacaa
     6421 aaaactatat ttttatctat agtaaaaaat aacaatattt tagcaaggta aaaatgatga
     6481 ttattgtagg gattttagga cttatcatta gtacagcggt tttgttaact tgtggagtat
     6541 tttgggtttt atttgggatt gtgttttggg gagtgatttt agcttttatg cttttggatt
     6601 taagtggaag ttatggtatg gtggcacttt atatactttt tatagtgctt aatttagttt
     6661 taatttacaa aatcataagg agaaagaaat gaaaaaatta gctttagctt taggtggaat
     6721 cgcactaggt gcttgtggtg aaaaaatcta taaaggcatt aaaaatactt gggataaatt
     6781 gatttttaaa gatctcatca cacttagaaa agtcatcaag caatacgaag aaatagagca
     6841 aatttatcct agctatttaa acgatcctaa atttttagaa tttagaaaaa cccacaaata
     6901 cgatgcagaa gctattcata atataaaaga tcatttattt agcgatctaa aaaaagaaaa
     6961 gcttattcaa ataggcacta caatggaagc ttttatggaa tatagcgata aatatcttca
     7021 agatgatata acggcattaa aaatcagctg gagattttgc gctataagat taaaatttga
     7081 tagtgctttg ttgcagttac aagatataaa caagatagta taaagagtta aaatgcaaga
     7141 aaatttaaaa gaaatttaca aagaatttga atttttaaat actcaatttt caagctattt
     7201 taatgatgaa gaatttgtaa attttaaaaa agattttgaa gcaaaaaatg ctttaaatta
     7261 ccgtgatttc gaagaattta aactagaaga aacagataaa gaaaggctta aagatataca
     7321 aattcgctta ttagcttata tcaacttttg tagcagtaaa gatataaaag aaaaaagagc
     7381 aggggtgatt tctaaaacct ttatgcctat gtttcttatt tctaggttgt attttacctt
     7441 aaaagaagaa aaactagata tacaaattcg caaaatactc aaggaaaaag atgagttggc
     7501 agaggaaaaa tctttatgga tttccaaagt tctgcctttt taaaaattct taataaaata
     7561 ttaaaatata ttgatttttg gtaaataaaa tattttaatt tataaaattt ttaaggagat
     7621 aaaatggctt ataaagttga caacgatttg gaatttttac gagaacttaa cgatgaatcg
     7681 ttagataatc tagtgtctat cttaattaaa gatgaaaatg gaaaaactag aacaacagag
     7741 agtttgacca ataaggattt gtataaaaaa cattaatcct aatcatggtc aatatttaga
     7801 cttgatttta gaagaacttc aaacttttgg tggaaataca tttgcaaata aaattagagg
     7861 aactggagtt gtctataaag aaattttatg tgatgttgca gataatttaa aagtcaagta
     7921 tgataaaagt gcaagtatag aaaatataga aaaagcgatt ttacttaatt cttttaataa
     7981 atcattagag aatttatcag aaagtgattt gaaagaaatt gcaaaagatt tttctataga
     8041 tgttaacact tacacaatag agtctatttc taatgctatc gcaaaaacta ataatcttaa
     8101 attactttat caaattgcaa tgttagttgt aaatgccata gcaagtaagg ttgcaattaa
     8161 tacagctata tttacaacaa gtagtttgat agcaggaagt ggtttagttg gaagtgctgc
     8221 aatttctggt gtattaggaa gtactgcgac atttttaggt tcacgagctg taggaacttt
     8281 agcaggacct attggaatga taatctcaag tgcgtggatg ataaacgaca ttgcaggtcc
     8341 tgcttttaga gttacagttc cagcagtgat ttatgtcgca tttttaagaa gacaattttt
     8401 atacgaaaag gagatgatta aacaaatgga agcagaacaa aaagaaaaag taagcaattt
     8461 aaataaaggt aaaaaatatt ctgcgactga gctttttaat caagagctta atattttaat
     8521 agttggtggc acaggtgcag gaaaaagctc tacgataaaa gctctttttg aaacagaagg
     8581 ttataatctt gatatagaaa taaatagtgg tggcaaacca gttacacaag aaatcaaaga
     8641 atataaatta ggcaatctaa caatttatga tagtccggga ttgggagatt caggagaaaa
     8701 tgataatgag catatgaaaa aaataaaaaa tttgctcttg gaaaaggata gcaaaggaaa
     8761 tgctaagatt gatctagttt tagtagttgt tgccgccaca gttggtagag atttagagtc
     8821 aacctataaa accataaaag aagcaattat gccttatatg gaagaaaaag aaaggatttt
     8881 aattgcatta aataaatgtg ataaagcagg cgctgatgaa gacattgagt ttgataaaga
     8941 aaataatcaa ttaactccag agttagaaga gattttggaa gaacaagtca aagcaattaa
     9001 agaaaggatt aaaacagata caggggttga tgtcgatgta atatattatg cagcaggttc
     9061 tacttcaaaa aagacaaaaa ttaaaaaacc agcatacaat cttaataaac ttctagcata
     9121 tattgttgct aaggcaccat tgaaaaagcg attagttttc ttaaaacacc aatcaagaaa
     9181 tcaagatgat tttaaatatg gtgataataa agaaaattac acagaagaaa tggtaaaatc
     9241 ttttattgaa acaataaaag aatatgcaaa gaatgtatct gattttataa tagaagtaaa
     9301 gaattttttt acttcagata aaggcaaaga ggtagtgggt gtagttaagg atgtttttga
     9361 aggaattgtg tcaatctttg gtaagagaaa ataatgtttt ctaaaatcct ttctgccttg
     9421 tctttagcaa atagttttaa agctatgatt tttaaacgct tatcaagtcc tgtccaaagt
     9481 gcctatttgg gttctttggt gtgggatata ataaatatcc ttaatagaga tcaacaagat
     9541 tcagaaaaaa tttgtcaaat tttagatttg cttagtgatt ttaaaaacaa gcatcctgaa
     9601 gactttgata aaattgtcga tattttaaaa gagattttag atgagtatga aaaaaatcca
     9661 agcgaagtta agaaaaattt gaaggaactt ttctaatatg caaaatctct taattctcta
     9721 taatccttac tatcaacaag atgttataaa attgcattta gaaattttat tagacaaagg
     9781 tcaggtagca tttggtaaaa taaaatctaa actaaaagag ccactttctt atgaaaggga
     9841 tgaaaataaa atctcacaca atcaaaaact atcagaaatt tacaaaaata cctctgctga
     9901 taatcctttg caactttttt tgagtgatta tgcaaattta tttgtagcaa aagtagtaaa
     9961 aataagtaaa gaagtagata aaaatatcat tccaaaatat taccaagaga aaaatttaga
    10021 agtggaggat tatttcttaa tcatagattt aagagaatta gtaagagaaa atttcacact
    10081 cataagagat aaatttttgg caaatttcac aacagaaaat aaccacactt atgcaattta
    10141 tggcaataac tattcttatc ctttggtagt caaacaaaaa gaggaaatta attattttta
    10201 tgatgagata aacaaatact acctgagcgt ttataaaaat caagagtatt taaaaatgca
    10261 agaaaatttt atacaattta tctttggtaa aaaatttttt tatatgctac atcctgatag
    10321 tatcaataac cttatcctag cagagctaga attgcaacaa aacttagaaa atccacttta
    10381 tgacttcact tcaataatag taaaatactc taaaactata gaatatgata gaatatgaaa
    10441 tatatgactt tgccaaaaag atatttacaa aactcatcaa gcaaaattct catctttcgt
    10501 ccataagtta tagtatacaa ggaaaagaat ttaactttaa gcagtttttc attaataaac
    10561 ctaatttagg aacaattaaa tttttactta aaaatagaga aattcaagag cttttagaca
    10621 gagatgtaaa aggatttatt aattatgaat ttaataaaac tttagatgaa tttcaaacga
    10681 tacgaaatca tgcagtgcat gcaaaatcac cgactttaga acaaacacta aaaattcgaa
    10741 atttaatttt aggtatagaa aatactagca ttttaaaacg cgtattagag tataaattca
    10801 aacaaaaagg ataaaaatga taagaccaaa gccttttctt aaaaaatgtc caaagtgtgg
    10861 aaaaatgttt ttatgtgctc ctaagagtga ttgcttaaat ccaagtgatt ttttctgcga
    10921 taaatgtagc ggcaaaaaag atacaagctt gataagtaaa attatttctg taattaaaaa
    10981 ggtttaaaat gtctcacgat aaacttgcag tgcgtttagc gcaaatttta atgcgtttta
    11041 ataatggagg aaggtttagc ctagaagaat tagcaagtga atttaatgta gatgttagaa
    11101 ccatacaaag agatttaaac caaaggcttt cttttatgcc tattaaaaaa gaaaatggaa
    11161 agtatttttt agaatctttt gcactcggca aacttagtgt taaagatata caaaattttg
    11221 ccatgttaag cgggattcaa gaactttatc caaagctaga tgaggatttt ataacagatt
    11281 tgctaaactc taaagtaaat agcattttta tgataaaaaa caatggcttt gaaaaagttg
    11341 attatgaaaa ttttaaaatc atcagtgttg cgattttaaa acacaatatt ttaaatttta
    11401 actataaaga aaaaagtcgt gaagtcaaac cttataagct tttaaactat caaggaattt
    11461 ggtatttaat agctgatgaa aaggataaat taaagcattt tacttttagc aagattaaaa
    11521 atattcgcaa aaatgatgaa atctttaccc ctaaagaaga atttttagac caaattctaa
    11581 atgataaaaa tatttggcta gatgatagca aagaagctat cgtaaagctt gataaaaagg
    11641 ctaaagagta tttttttaga aaaaatattt taaacaactt tgaactcatc gatgaagatg
    11701 agcaaagcta tactctaaaa gtatattttt cctatgatga tgagcttcta aatgtagtaa
    11761 aacaatggat accctatatg aagatagaaa aaccttttga actgaaagaa aaactagata
    11821 gcattttaaa agactacttg gaaaactaat ttcttaataa attcaaatat tttttgctat
    11881 aatcacagtt ttattttaat gagaggagaa aattttggca aaagacgatg tgattgaaat
    11941 cgatggcaca gtgcttgaag cattacctaa tgcaaatttt aaagttgaac ttgacaacaa
    12001 gcatgtgatt ttatgtcata tagcaggaaa aatgcgtatg cactatataa gaatcatgcc
    12061 aggggataaa gttaaagttg aacttacacc ttatagcctt gataaagggc gtatcacttt
    12121 tagatataaa taatataagt tatttaaaag ctaattttag ataaaattag cgtttttgcg
    12181 acaaaatgta tcgaactata tgaagaggta tttttaaaat tcaccactta ttttaaaaat
    12241 agttggttat tcataaaacc tgatgcagtc gtaaatgaag tggaattcat ttaaggagaa
    12301 ctcatgaaag tgagaccatc agttaaaaag atgtgcgaca agtgcaaagt agttcgccgt
    12361 aaaggcgtag ttcgcattat ttgcgaaaat ccaaaacata aacaaagaca aggataaaca
    12421 tggctcgtat cgcaggtgtg gatttaccaa agaaaaaaag aattgagtat ggacttacct
    12481 atatttatgg tataggactt ttcacttcaa gaaaaattct agataaagta ggaatttctt
    12541 atgataaaag agtgcatgaa ctaagtgaag atgaagcagc agctatcaga aaagaaatcc
    12601 aagaaaacta tatggttgaa ggggatttaa gaaaacaagt tgctatggat ataaaagcac
    12661 ttatggattt aggaagcttt agaggcttaa gacacagaaa aggcttacca gttcgcggac
    12721 aaaaaacaaa aacaaacgca agaactagaa aaggtaagag aaaaactgtt ggtgcaaaat
    12781 cataaggata aatcatggca aaaagaaaaa tcgtaaagaa aaaagtagtt aaaaaaaata
    12841 tagcaaaagg tattgtttat atcagtgcaa cttttaacaa taccatggta actgttacag
    12901 atgaaatggg aaatgctatc gcttggagca gtgcaggcgg tttaggattt aaaggttcta
    12961 aaaaatcaac tccttatgca gcacaacaag cagtagaaga cgctttaaat aaagcaaaag
    13021 aacacggaat caaagaagta ggcattaaag tacaaggacc aggaagcggt agagaaactg
    13081 ctgttaaaag tgtaggtgct atggaaggaa tcaaagtaac tttcttaaaa gatattactc
    13141 cattagctca taatggttgc agaccgccta agcgtcgtcg tgtctaagat ataagaaaaa
    13201 attaggagaa ttaattatgg caagatatag aggaccagta gaaaaattag aaagacgctt
    13261 tggtgttagc ttagcattaa aaggagaaag aagactagcc ggaaaaagcg cattagataa
    13321 acgcccttat gcaccaggac aacacggagc aagaaaaggt aaaatcagcg aatacggact
    13381 ccaattaaga gaaaaacaaa aagctaaatt tatgtatgga gtaagtgaaa aacaattcag
    13441 aagacttttt gcagaagctg ctagaagaga tggcaataca ggggttttac ttatccaact
    13501 tttagagcaa agacttgaca atgtagttta tagaatgggc tttgctacaa ctcgtcgttt
    13561 tgcaagacaa cttgtaactc atggacacat tttagtaaat ggaaaaagag tagatatccc
    13621 tagctttaga gtagaagcag gagcaaaaat cgaagtaata gaaaaaagca aaaataatcc
    13681 tcaaatcaca agggcgatcg agcttactgc tcaaacaggt atcgttgctt gggtagatgt
    13741 ggaaaaagat aaaagatttg gaattttcac tagaaaacct gaaagagaag aagttatcat
    13801 tccagtagag gaaagattca tcgttgagct ttactctaag taataggggc taaatcatga
    13861 gaaacattac aacatctgct tatacgccga cagaattcac tatagaaaat attagtgata
    13921 gtgtggctaa aatcagtgct tggccttttg agatcggcta tggtattacc ctagcccatc
    13981 cttt
//
LOCUS       DARAII010000037        13826 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.037, whole genome shotgun sequence.
ACCESSION   DARAII010000037 DARAII010000000
VERSION     DARAII010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13826
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.037"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..231)
                     /locus_tag="SB143_000898"
     CDS             complement(<1..231)
                     /locus_tag="SB143_000898"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749447.1"
                     /translation="MKITMIILSLFSLVFLSACAFKEKKASEIETLASNYGGIYIFDK
                     KIREEILENERKKGEVMKKMSLGDDFWDQLKVI"
     gene            complement(410..1732)
                     /locus_tag="SB143_000899"
     CDS             complement(410..1732)
                     /locus_tag="SB143_000899"
                     /inference="COORDINATES: protein
                     motif:HMM:NF015763.1,HMM:NF017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1007 family protein"
                     /protein_id="HEF9749448.1"
                     /translation="MRAIFVLIFLALSNLYSCALCATYTPNVDVNLDFNMSNEKIKQV
                     DISWEFSEEFFNILLENYDFNYNDKFDPDELEIVKYTLLDYIKPKHFLTQFSFNGLEE
                     NINIKQFKNPKLQIKSPRLFFSYQVVLDMPIKDYNTFSIKIHDDGGFFNFNIKNQNSI
                     SLNSQNYIISSIDSSTASFEVYQGQLPQDVYIDNAPSPSPSKNFLEKLIEFNNTLFAH
                     IKDILRKEFDFKSFLILLVISFAYGVFHASAPGHAKMLTSSYFLTHKSTPLKILYFVS
                     RIGVIHILSAFLLVSVGVVLLEHLLKDVNNEAGFVLTKITSLFIIFIALFMISKKILS
                     DKKQCCCAHHKSNEWGIILSAALVPCPGVVLLIVFAYEFSFWYALSSAIFITLGMCLV
                     LFAFALGANQFYKSISHTKIRIFLEYFGLIVMFLFGLFLFINIKTNAL"
     gene            complement(1729..2598)
                     /locus_tag="SB143_000900"
     CDS             complement(1729..2598)
                     /locus_tag="SB143_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEF9749449.1"
                     /translation="MLRILLLSVLCVFAFGKPIISVSIPPQAFFVEKIAKDSVEINIL
                     IPPNSDEHTMEFKPQALKKLEQSEIYFLADLELEKILEKKFKSVLKNVKIVNINEGIH
                     LLEGGHDHEHEHDHDHDRHHAEEHDEHNDPHVWLDPILVKKLAQNITQALVQSFPNNK
                     EFYEANLANFLKELDQMDAQIAEKLKNIKRNEFIVYHPSWAYLAKRYNLVQIPVEIDG
                     KEPKSKDLQNLIKLAKEKDIRVIFVQPGFPENSAKVLAKELNAQIVSINHLARNWDEE
                     LLKSIQALSSALQ"
     gene            2731..3075
                     /locus_tag="SB143_000901"
     CDS             2731..3075
                     /locus_tag="SB143_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEF9749450.1"
                     /translation="MEALELLKKHDIAITDLRVELLQILSLAKTPLSYDHFDIKANKT
                     SFYRNMELFEKKGIVSKSELNRKSFYELADHAKAHFVCDKCHKISDVQMPKVKGMIKS
                     VLIKGICSDCEK"
     gene            complement(3130..3978)
                     /gene="lepB"
                     /locus_tag="SB143_000902"
     CDS             complement(3130..3978)
                     /gene="lepB"
                     /locus_tag="SB143_000902"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEF9749451.1"
                     /translation="MNFLKKLYKFSQSWTGTVIIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFDKDGHLIKGQSPQRGDIVVFRNPKNEKE
                     HFVKRCVGVGGDRIVYANKTLYVRMHEGDEFMKEHYPDDLATLGGQIYVKEPYRQKGI
                     HYDLNKDIESDILRFLSVGKFAMSPTYFKELGNNIGFSGGNAYVFDVAEEEYFMVGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDQDKNVRWERIGRFVDTLENEEEYIHDHD
                     DEDKLS"
     gene            complement(3979..4836)
                     /gene="folD"
                     /locus_tag="SB143_000903"
     CDS             complement(3979..4836)
                     /gene="folD"
                     /locus_tag="SB143_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEF9749452.1"
                     /translation="MTLLDGKALSAKIKQELKEKNKMLKENGVETCLAVILVGNDPAS
                     QTYVNSKAKACEECDIKSLVYRLDENTTQNELLALINTLNHDDSVHGILVQLPLPKHI
                     SKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYDINLEGLDS
                     VVIGASNIVGRPMATMLLNAGCTVSICHIKTKDLSAYTQKADLIIVAAGCVNLLRADM
                     VKEGAIIIDVGINRLENGKIVGDVDFEEVSKKASFITPVPGGVGPMTIAMLLENTVKS
                     AKNSLKSGI"
     gene            4914..5261
                     /locus_tag="SB143_000904"
     CDS             4914..5261
                     /locus_tag="SB143_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749453.1"
                     /translation="MKAVLIFLGAILNLFASDFITLKEYSKMLYENPRGISCKKCHGN
                     DGSEQTLGFYMKNGVKTAYKVPSIQNLSFEEFQNSLNQDKDAKSIMPNYSLTNDEIIT
                     LYNYIKQSKKEQK"
     gene            5258..6532
                     /gene="hemL"
                     /locus_tag="SB143_000905"
     CDS             5258..6532
                     /gene="hemL"
                     /locus_tag="SB143_000905"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEF9749454.1"
                     /translation="MTNKKAFKIACSLIAGGVNSPVRAFANVQSEPRFISHGKGAHIF
                     DIEGNSYIDYVQSWGPLLFGHCDKDILKACNEALKKGSSFGAPTLLETQLAELVLEDF
                     PHLDKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLADVAKHTLVATYNDIESVKELFEKNKDIACVIIEPIAGNMGLVPGKQDFL
                     EELVKICKENDTLLIFDEVMSGYRASYLGSYGINHIQADIVTFGKVIGGGLPAAAFAA
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLSKAKKKKDLYTKLGKLAKRLTKGM
                     KELANERGVALQTCYIGSMFGYFFTQDPVYNYKDALKSDLKLFSKFHQNMLKNGIYLA
                     PSQFETGFICAKINKEHIDKTLQSTYESFKKL"
     gene            6529..6834
                     /locus_tag="SB143_000906"
     CDS             6529..6834
                     /locus_tag="SB143_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEF9749455.1"
                     /translation="MSENSNKRQKIIRKTIEAADGLSLGISMVVAILIGIGVGYLLKK
                     FTPYPWLFWLGVFWGVAAAILNVYKAYKSQVKSYGEFQQRDEFIKEKIRQKEQDNGK"
     gene            6824..7327
                     /locus_tag="SB143_000907"
     CDS             6824..7327
                     /locus_tag="SB143_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749456.1"
                     /translation="MENKKAFFIILCLIHVLFYCILVIFKWINLNIILSYEFAFFSIL
                     LIVFTSYSNYKKFILAQAKNHQKDFIYPSLFYIKKIEKLPRIVKFISIKDDLSLNFKD
                     RLRFFTLFFALFKLIAYGVLVAGFLFLHRQDKLDILSYICGISSLLVCVFIFMLYIRR
                     YESKKNH"
     gene            7305..8492
                     /locus_tag="SB143_000908"
     CDS             7305..8492
                     /locus_tag="SB143_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749457.1"
                     /translation="MSPKKIIRSMTALFASMTFLFAGNALIVSSIGVILKENKESSLA
                     VGVLSSCFFIGALIGTIGAHKIISRIGHIRSFGLFGAVFGISAMLHTLSENLVFWAIL
                     RFFIGICYYGLLMVIESWLNEKSKNAVRSRILGFYEIVFYLAFGIGILIIALDLNKHN
                     IFILSAALILLSSLPLNLIKIKEPVLPAPSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFGAQEVSYFMFCGVLGGFLAQIVVGSISDKMGRKFAIITCSSIGFF
                     TMLIFAFFKLHLYMQYFLGILLGIGVFCLYALALARANDMLTNKNQGVEVGRGVLFCY
                     SLGSLFGPLILGFLIQYFNTDGFVWFYIASLGFLILFAVNKPNILNKKFKKKPGNMVM
                     LDD"
     gene            8485..10806
                     /locus_tag="SB143_000909"
     CDS             8485..10806
                     /locus_tag="SB143_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEF9749458.1"
                     /translation="MINTQLTSQIANAQKNDIKTDSGISKDKLNSKDNPKEALSQALK
                     QNLGLSKNASNEEVLTRFVQNETSAKLKELVNKLLDQINAQKNPDSPMLKQGKNLNLA
                     PNFANELKVLSTELAKSDTFTQVLDKLNQILKPASEIKNSNLAPLLKNSGIFFEAKLK
                     DALNEELLPKSFHSLISMIKSLSSEKIGTQIAQLANANLSPKDTLKELRNIIYSNKNE
                     NKQILNQSSFKALLNLSSKLENFKNYIAKNPSHTQEKILPIASKIAKELNAIKNDFFK
                     ALNRPENLMIQDTELLKQSAKAFEKLENTLKNILGDHFPKTPQKESILESLLNHKENI
                     KNENIKNELIKNENIKEDIKAQNEDINKNDEYTKDESPDSSIKQEESEEKSPQVPKKE
                     NSLDDNDADIKQDIKKEENLESQEDFHPKEDQNLDSKTENRKDNTQDSKNKTEENQAE
                     NNTKNSTSNQDKIKDEKQEKIKENITKENPKFYETKTENKTSANTHNPNNNPSNTQNT
                     QQLNNQTAQNIIKNQEFIKQNIVKNLAFSVENLDLEQVQDLSKSLSNLSRKVNESLKE
                     LEPHTQNAKLNQAELKTLEHKLNLSIKDLAQIKPKTEQDIAESLHHDVKSTLLQISNL
                     AKNEGNEAVYNQANRLLAQIELNQLMSLANDSINTYLPFSWEDLDDSKIMFRRGKKDK
                     FFAQIKLEFAKLGDLEILISLNNDKYIDINIMAENVEFRKTIYENAHELKRNINKAGL
                     LSANFFVGDIIRSKFDTRNAKNLDLEMGMDKKV"
     gene            10803..11084
                     /locus_tag="SB143_000910"
     CDS             10803..11084
                     /locus_tag="SB143_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEF9749459.1"
                     /translation="MSKIKKSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(11081..11881)
                     /locus_tag="SB143_000911"
     CDS             complement(11081..11881)
                     /locus_tag="SB143_000911"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEF9749460.1"
                     /translation="MSFSNESSRIFGLIAGVEFPSFIQKIINEKYVNYFKIDMSEFKA
                     PCEYESLNALFTRSLQIPREINEGFISPSDGKILECGSAFLADNALFAFSIKGHTYSI
                     EELLKDSFKKEELENGLDYVNIYLSPRDYHRYHSPCNMQILSATYTSGALYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFKFDTSIQTNAKFSHNFTRK
                     YENLELKKGEELGNFELGSTIVLIAQKGLLDIKLKAGQNVKFGEKIAD"
     gene            complement(11878..13002)
                     /locus_tag="SB143_000912"
     CDS             complement(11878..13002)
                     /locus_tag="SB143_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEF9749461.1"
                     /translation="MIFFIFSFVTLLIFGLANIYIYKRLIKKIFIFKYLYKIFAFVFT
                     LLFLAQAIFLIFRRNEYLSDTWYEFLAALYAPTYCLFFITLGLDFIRLILMLMGKMHK
                     KYSLALRSVFDLTIISLAVVLIYTSINNAIRVPEIQSTDIYLAKLDRDLKIAMLTDIH
                     LGKNLHKDFLDRLIVEVNLQKPDMVVIVGDLVDTNPKELQNYISRLNDLKSTYGTFYA
                     LGNHEYYHGVDEVLNLLKEYTNMKILLNQNLDLGFINIAGLGDLAGLSKGLYAPDLAR
                     IKVDLNTSKASILLAHQPKTALLYNLSDFDLILSGHTHGGQIFPFMFLVKLHQGFIRG
                     LYDLGENTKLFVSSGAGFWGPSLRVFAPNEIVILNLKGEK"
     gene            13087..>13826
                     /gene="gltX"
                     /locus_tag="SB143_000913"
     CDS             13087..>13826
                     /gene="gltX"
                     /locus_tag="SB143_000913"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEF9749462.1"
                     /translation="MYRFAPSPTGDMHIGNLRAALFNYICARQKNMDFILRIEDTDKA
                     RNITGKEEEIKEILHLFGISWQHYYVQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCQNLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVSCIIRGEDHVSNTPKQEHIRASLGYDK
                     AMTYAHLPIILNEEGVKMSKREAHSSVK"
BASE COUNT         5046 a         2252 c         1992 g         4536 t
ORIGIN      
        1 tatgactttt aattgatccc aaaaatcatc ccctaaagac atttttttca ttacctctcc
       61 tttctttctt tcattttcca atatctcttc tcttattttt ttatcaaaga tataaattcc
      121 accataatta cttgcaagag tttctatttc acttgctttt ttttctttaa aagcacatgc
      181 acttaaaaat actaaagaaa ataagcttag aattatcatt gtgattttca tttaatgctc
      241 ctttgtttaa aataagcata ttataaaata atttttatat gaattgattt tgaacactaa
      301 gcattttttc atagtttata aactacatgc ttgcttgtta attatgtatg atttgaaaaa
      361 tctagattta gataaaaaat attttaccca ttttatctag aaatttcttt tatagtgcat
      421 ttgtttttat attgataaac aaaaacaaac caaataaaaa cataacaata agtccaaaat
      481 attctaaaaa gattcttatt tttgtatgtg aaatgctttt ataaaattga tttgctccta
      541 atgcaaaagc aaacaatact aaacacattc ccaaagtgat aaaaatagca gagcttaacg
      601 cataccaaaa actaaactca taggcaaata ctataagtaa aacaaccccg ggacaaggca
      661 ctaaagcagc gctaagtata ataccccatt cattgctttt atgatgagca cagcaacatt
      721 gctttttatc gcttaatatc tttttactaa tcataaataa agcaataaaa ataataaaca
      781 aactcgtaat cttagtcaat acaaagccag cttcattatt gacatctttt aataaatgct
      841 caagtaaaac cactccaaca cttaccaata aaaacgcact caatatgtga ataactccta
      901 tcctagatac aaagtacaat atctttaagg gtgtactttt atgggttaaa aaatacgaac
      961 ttgtcagcat tttagcatga cctggagcac tagcatgaaa aacaccatac gcaaaagaaa
     1021 tcactaataa aatcaaaaag gatttaaaat caaattcttt tcttaatata tctttaatat
     1081 gggcaaaaag tgtattatta aattcaatca atttttctaa aaaatttttt gaaggagaag
     1141 gacttggagc attatctata tatacatctt gaggtaattg cccttgatat acttcaaaag
     1201 atgcagtgct tgaatcaata ctagaaatga tataattttg cgaatttagg cttatagaat
     1261 tttgattttt tatattaaaa ttaaaaaatc ctccatcatc gtgaattttt atgctaaagg
     1321 tgttataatc tttaatgggc atatctaaaa caacttgata actaaagaac aaacgaggag
     1381 actttatctg caatttagga tttttaaatt gcttgatatt tatattttct tccaagccat
     1441 taaagctaaa ttgagttaaa aaatgcttag gttttatgta gtctaaaagt gtgtatttta
     1501 caatttcaag ttcatcagga tcaaatttat cattataatt aaagtcataa ttttcaagca
     1561 aaatattaaa aaattcttct gaaaattccc agcttatatc tacttgtttg attttttcat
     1621 tgctcatatt aaaatctaaa tttacatcta catttggggt gtaagttgcg cacaaggcgc
     1681 aagaatataa gttgcttaaa gctagaaata ttaaaacaaa aatcgctctc attgtaaggc
     1741 cgaacttaaa gcttggatac tttttagaag ctcctcatcc caatttctag ccaaatgatt
     1801 aatagaaaca atttgagcat ttaattcttt agctaacact tttgcagaat tttctggaaa
     1861 gccaggctga acaaagataa cgcgtatatc tttttctttt gcaagcttga taagattttg
     1921 caaatcttta cttttaggct ctttaccatc aatttctaca ggaatttgca caagattgta
     1981 tcttttagcc aaataagccc aacttggatg ataaactata aattcatttc ttttaatatt
     2041 tttaagtttc tctgcgattt gagcatccat ttgatcaagc tcttttaaaa agttagccaa
     2101 atttgcttca taaaattctt tattgtttgg aaaactttgc actaaagctt gggtaatatt
     2161 ttgtgccaat tttttaacca aaataggatc aagccaaaca tgagggtcat tatgctcatc
     2221 atgctcttct gcgtgatgtc tatcgtgatc atgatcgtgt tcatgctcat gatcatgccc
     2281 tccttcaaga agatgaatac cttcattaat attaacaatt tttacatttt ttaatacact
     2341 tttaaatttt ttttccaaaa ttttttcaag ctctaaatct gctaagaaat aaatttcact
     2401 ttgctctaat tttttcaatg cttgaggctt aaactccata gtatgctcat ctgaatttgg
     2461 tggtatgagt atatttattt caacactgtc tttagctatt ttttccacaa aaaaagcttg
     2521 aggtggaatg ctgacactaa ttatgggctt tccaaaagca aaaacacata atacacttaa
     2581 taataaaatt ctcaacatag attttcctta taataaaata ttttgaaatt atacaaaatg
     2641 caacttagtt gcaacttaaa cataaagttg caaacataaa gcttttttat gctacaataa
     2701 aatataattt atattttaaa ggtaaatctt atggaagctc ttgaattatt aaaaaaacac
     2761 gatatagcta taacagacct acgcgtagaa ttactacaaa ttttatccct tgcaaagact
     2821 ccattaagtt acgatcattt tgatatcaaa gccaataaaa ccagttttta tcgtaatatg
     2881 gaactttttg aaaaaaaggg tattgttagt aaaagtgagt taaaccgcaa aagtttttat
     2941 gaattagcag atcacgctaa ggcacatttt gtttgtgata aatgccataa aattagcgat
     3001 gttcaaatgc caaaagtaaa aggtatgatt aaaagtgtgc ttataaaagg catttgtagt
     3061 gattgtgaaa aataaaataa gccaaattta agaaagtgat tttatttact gcttatacag
     3121 aaaacaaaat caactcaatt tatcctcatc atcatgatca tgaatgtatt cttcttcatt
     3181 ttccaaagta tcaacaaaac gccctatcct ttcccagcga acatttttat cttgatccca
     3241 tgaaaaataa acaaaccaag gctttcctac tatcaaacga taaggaacag agccccaaaa
     3301 acggctgtca taagaataat ctctattgtc ccctaccata aaatattctt cttcggccac
     3361 atcaaaaaca taggcattac caccactaaa gcctatatta tttccaagtt ctttaaaata
     3421 agttggcgac atagcaaatt tgcccacact aagaaaacgc aaaatatcac tttctatatc
     3481 tttgtttaaa tcataatgaa tccctttttg cctataaggc tctttaacat aaatttgccc
     3541 tccaagggtt gccaaatcat caggataatg ttctttcata aattcatcac cctcatgcat
     3601 tcttacataa agtgttttat tggcataaac gattctatct ccacccactc ctacacagcg
     3661 ttttacaaaa tgctcttttt catttttagg gtttctaaaa accactatat cgcctctttg
     3721 ggggctttgc cctttgatta aatgtccatc tttatcaaaa tccggtaaaa ctggaatttc
     3781 aagccacgga atatgtggag ttggaattcc atagctgaat tttttaacaa ataaaaaatc
     3841 acctacaagc aaggtatttt tcatcgaacc tgaaggtata acaaaggctt gtataaagaa
     3901 aaagattact aaaagaacga tgataaccgt tcctgtccat gattgtgaaa atttataaag
     3961 tttttttaaa aaattcattt atattcctga ttttaaacta tttttagctg attttactgt
     4021 gttttccaaa agcatcgcta tagtcatagg gcctacaccg cctggaacag gggttataaa
     4081 actggctttt tttgaaacct cttcaaaatc cacatcgcct actattttgc cattttcaag
     4141 gcgattaatt cctacatcaa ttataatagc accctcttta accatatctg cacgaagcaa
     4201 attaacacat cctgctgcta ctataatcaa atctgctttt tgagtataag cgctcaaatc
     4261 ttttgttttt atatgacaaa tacttaccgt acaacccgca tttaaaagca tggtagccat
     4321 aggacgacct actatatttg aagcaccgat tacaacgcta tctagtcctt caagattgat
     4381 atcataagct tttaaaagct tcataacgcc aagtggagtg caaggtaaaa atccactttc
     4441 caaacctaaa tttaaataac ccacattaat aggatgaaag ccatccacat ccttactact
     4501 gatgatactt tctaaaatta aatccttgct gatatgtttt ggtaaaggaa gctgaactaa
     4561 aattccgtgg acactatcat cgtgatttaa ggtattaata agagctaaaa gctcattttg
     4621 agttgtattt tcatccaaac gataaaccaa agattttata tcacattctt cgcaagcttt
     4681 agctttagaa ttgacataag tttgacttgc tggatcatta cctactaaaa ttaccgcaag
     4741 gcaagtttct actccatttt cttttaacat tttgtttttt tctttaagtt cttgtttaat
     4801 cttggcgctt aaagctttac catcaagcaa agtcattctt ttcctttata aatttatcac
     4861 ttttttaaag taaaaattgt atcatattaa aacttcatta acaaggtgaa attttgaaag
     4921 ctgttttaat atttctagga gctattttaa atctttttgc ttctgatttc ataacactta
     4981 aagagtattc gaaaatgctc tatgaaaacc caaggggtat tagttgtaaa aaatgccatg
     5041 gtaacgatgg aagcgaacaa actctaggtt tttatatgaa aaatggagtt aaaacagcct
     5101 ataaagtccc aagtattcaa aatcttagtt ttgaagaatt tcaaaattct cttaatcaag
     5161 acaaagatgc aaaatcgatc atgccaaatt actcattaac caatgatgaa attataacct
     5221 tatataatta catcaagcaa tctaaaaagg agcaaaaatg acaaacaaaa aagcttttaa
     5281 aatagcttgc agtcttattg caggaggtgt aaattctcct gttcgtgctt ttgccaatgt
     5341 gcaaagtgag cctagattta tatcccatgg aaagggagct catatttttg atatagaagg
     5401 caatagctat attgattatg tgcaaagttg gggacctttg ctttttgggc attgcgataa
     5461 agatatatta aaagcttgca atgaggcttt aaaaaagggt tcaagctttg gtgcgccgac
     5521 tttgctagaa acacaactgg ccgagcttgt tttagaagac tttccgcatt tagataaaat
     5581 tcgctttgta agcagtggta cagaagcgac catgagtgcc atacgccttg ctcgcggttt
     5641 taccaaaaaa gataaaattc taaaatttga aggttgctat cacgggcatt cagattcttt
     5701 acttgtaagt gctggaagtg gcgctgctac ttttaattca ccgagctctt taggggtttt
     5761 agcagatgta gcaaagcata ctctagtagc aacttataac gatatagaaa gcgtaaaaga
     5821 gctttttgag aaaaataaag acattgcttg tgttattatc gaacctattg caggaaatat
     5881 gggattagtt cctggcaagc aagatttctt agaagagctt gtcaaaattt gcaaagaaaa
     5941 cgataccttg ctcatctttg atgaagtgat gagtggatac agagcttcat atcttggctc
     6001 ttatggtatc aatcacatac aagcagatat cgttactttt ggcaaggtta taggtggagg
     6061 cttacctgca gcagcttttg cagctagagc agaaatcatg gatattttaa gtccattagg
     6121 aggagtttat caagcaggaa cactcagtgg aaatcctttg gcaatggctg caggaattgc
     6181 tagtttatct aaagccaaaa agaaaaaaga tctttatact aaacttggaa aattagccaa
     6241 aaggcttact aagggaatga aagaacttgc aaatgaaaga ggtgttgctt tacaaacttg
     6301 ctatataggc tctatgtttg gatatttttt cacacaagat ccagtgtata attataaaga
     6361 tgctctaaaa tccgatctta aactcttttc taaatttcat caaaatatgc ttaaaaatgg
     6421 aatttatcta gctccttctc aatttgaaac aggatttatc tgcgctaaaa taaataaaga
     6481 gcatatcgat aaaaccttac aaagtacata tgaaagcttt aagaaactat gagtgagaat
     6541 tctaataaaa gacaaaaaat cattcgcaag actatagaag ccgcagatgg gcttagtctt
     6601 ggaatttcca tggtcgttgc tattttaatc gggattggcg tggggtattt gttaaaaaaa
     6661 tttacaccct acccttggct tttttggctg ggtgtatttt ggggtgttgc agcagcaata
     6721 cttaatgttt ataaagccta taaatcacaa gttaaaagtt atggagaatt tcaacaaaga
     6781 gacgagttta taaaagagaa aattcgccaa aaagaacaag ataatggaaa ataaaaaagc
     6841 tttttttatt atcttgtgct taattcacgt cttgttttat tgcattcttg ttatttttaa
     6901 atggataaat ttaaatataa ttttaagcta tgaatttgct ttttttagca ttttattgat
     6961 cgtttttact tcttattcta attataagaa atttatccta gctcaagcaa aaaaccatca
     7021 aaaagatttc atttatccga gtttatttta tataaaaaag atagaaaagt tacctagaat
     7081 tgttaaattt atttccatta aagacgattt atctctaaat tttaaagata ggttacgctt
     7141 ttttactttg ttttttgcct tatttaaatt gatagcctat ggggttttag ttgcgggatt
     7201 tttattttta catcgtcaag ataaattaga tattttatcc tatatatgtg gaatttcatc
     7261 cttgctagta tgtgttttta tttttatgct gtatataaga agatatgagt ccaaaaaaaa
     7321 tcattagatc catgacagca ctttttgcca gtatgacatt tttgtttgca ggcaatgcct
     7381 tgatcgtaag ctccataggt gttattttaa aagaaaataa agaaagctcc ttggctgttg
     7441 gagtgctaag ctcttgcttt tttataggag cccttatagg caccatcgga gcacataaaa
     7501 tcatctctcg cataggacat ataagatctt ttggtttatt tggtgcggtg tttggaattt
     7561 ctgctatgct tcataccctt agtgaaaatc ttgttttttg ggcgatttta agatttttta
     7621 taggaatttg ctattatggg cttttaatgg taatagaatc atggcttaat gaaaaaagca
     7681 aaaacgccgt tcgttctaga attttaggtt tttatgaaat cgtattttat cttgcgtttg
     7741 gtattgggat tttgattatt gctttagatt taaacaagca taatatattt attttaagtg
     7801 cagcacttat cttgctttca tcattgcctt taaatttaat caagatcaaa gaacccgtct
     7861 tgcccgcacc aagtcctatt tctataccta aaatttttga tatagctcct ttagctattg
     7921 ttacaagttt tatagctgga atgcttatta atgggttttt ttctatggcg tctttgttta
     7981 tacttttaca aggctttgga gctcaagaag tttcttattt tatgttttgt ggagtgctgg
     8041 gtggattttt agcccaaatt gtagtaggaa gtatttctga taaaatggga cgaaaattcg
     8101 caatcatcac ttgctcaagc ataggttttt ttaccatgct tatctttgct ttttttaaac
     8161 ttcatttgta tatgcaatat tttttaggta ttttacttgg tataggagtt ttttgtcttt
     8221 atgctctagc tcttgcaagg gctaatgata tgctaacaaa caaaaatcaa ggcgttgaag
     8281 tgggtcgtgg ggttttattt tgttattctt taggctcttt gtttggtcct ttaattttag
     8341 gatttttaat acaatatttt aatacagatg gttttgtttg gttttatata gcctctcttg
     8401 gatttcttat cctttttgca gttaataaac ccaatatttt aaataaaaaa tttaagaaaa
     8461 aaccaggaaa tatggtgatg cttgatgatt aatactcaac ttacaagcca aattgcaaat
     8521 gcacaaaaaa atgacataaa aaccgatagt gggataagta aagataaatt aaattctaaa
     8581 gataatccta aagaagcact ttctcaagcc ttaaaacaaa atttgggact aagtaaaaat
     8641 gcaagcaatg aagaagtttt aactcgtttt gttcaaaatg aaacaagcgc aaaattaaaa
     8701 gaacttgtca ataagctctt agatcaaatc aatgcacaaa aaaatcctga ctcacctatg
     8761 cttaaacaag gaaaaaatct aaatttagcc cctaattttg ccaatgaatt aaaagtctta
     8821 agcacagaac ttgcaaaaag cgataccttt actcaagttt tggataaatt aaaccaaatt
     8881 ttaaaacccg caagtgaaat aaaaaatagt aatttagcgc cattgttaaa aaattcgggt
     8941 atcttttttg aagcgaaatt aaaagacgct ttaaacgagg aattattacc caaaagtttt
     9001 cattctctta taagcatgat taaaagtctt agcagtgaaa agattggtac gcaaattgca
     9061 cagcttgcaa atgcaaattt aagtcctaaa gacaccttaa aagaattaag aaatattatt
     9121 tattctaata aaaatgaaaa taagcaaatt ttaaatcaaa gctcttttaa agctctttta
     9181 aatttaagct caaaactaga gaattttaaa aactatatcg ctaaaaatcc aagccatact
     9241 caagaaaaaa ttcttcctat agctagtaaa attgcaaaag aattaaatgc gataaaaaat
     9301 gattttttta aagctttaaa cagaccagaa aatttaatga tacaagatac cgagctttta
     9361 aaacaaagtg caaaagcttt tgaaaaatta gaaaatacct taaaaaatat cctaggtgat
     9421 cattttccta aaacacccca aaaagaaagt attttagaaa gtcttttaaa tcataaagaa
     9481 aacattaaaa atgaaaatat taaaaacgag cttatcaaaa acgaaaatat caaagaagat
     9541 ataaaagctc aaaacgaaga cattaacaag aatgatgaat ataccaaaga tgaaagcccc
     9601 gactctagca tcaaacaaga agaaagtgaa gaaaaatctc ctcaagtacc aaaaaaagaa
     9661 aattcattag atgataatga tgcggatata aaacaagata tcaaaaaaga agaaaattta
     9721 gaatctcaag aagattttca tccaaaagag gatcaaaatt tggattctaa aacggaaaat
     9781 cgtaaagaca atactcaaga ttcaaaaaat aaaacagaag aaaatcaagc agaaaacaat
     9841 acaaaaaatt ccacctcaaa ccaggataaa atcaaagatg aaaaacaaga aaaaattaaa
     9901 gaaaatataa ccaaagaaaa tcctaaattt tacgaaacaa aaacagaaaa caaaacttca
     9961 gcaaacactc ataacccaaa caataatcca agcaatactc aaaatacaca acaattaaac
    10021 aatcaaaccg cccaaaatat cataaaaaat caagaattta taaaacaaaa tattgtaaag
    10081 aatttggcct ttagcgtaga aaatttggac ttagagcaag tgcaggattt aagcaaaagc
    10141 ttaagcaatc tttcaagaaa agtcaatgaa agcctaaaag aactcgagcc ccatactcaa
    10201 aatgccaaac tcaatcaagc agaattaaaa accttagaac ataaattaaa tttatccata
    10261 aaagatttag cacaaattaa accaaaaacc gagcaggata tagccgaatc tttacatcat
    10321 gatgtaaaat caaccctttt gcaaatttca aatttagcca aaaacgaagg taatgaagcc
    10381 gtatacaatc aagccaatcg tcttttagcg caaattgaac tcaatcaact catgtcttta
    10441 gctaatgatt ctatcaatac ctatctgccc ttttcttggg aggatttaga tgattctaag
    10501 atcatgttta ggcgtggaaa aaaggataaa ttttttgctc aaattaaact tgaatttgcc
    10561 aagcttggcg atttggaaat tcttatctct ttaaacaatg ataaatacat agatattaat
    10621 atcatggcag aaaatgttga atttagaaaa accatctatg aaaatgctca cgaacttaaa
    10681 agaaatatca ataaagcagg acttttaagt gcaaatttct ttgtaggaga tatcataaga
    10741 agcaaatttg atacaagaaa tgccaaaaat ttagatcttg aaatgggtat ggataaaaaa
    10801 gtatgagcaa gataaaaaaa tcaatcaaaa aagctgtcgc tctaggctat caaaaagaaa
    10861 aaaattcagc acctaaagtt cttgctagcg gcaaaggaga aagtgctgct aaaattatct
    10921 ctttagctaa agaacacgga gttcctatca aagaagatga ggatttgata gaaattttaa
    10981 gtaaattaga cttaggagat gaaattccgc ccaatatgta taaagctgtg gctgaagttt
    11041 ttgcttttat ttatcaaatg gcaaataaaa cacctaaaaa ttaatctgct attttttctc
    11101 caaatttaac attctgccct gctttaagct tgatatctaa aagtcctttt tgagcaatta
    11161 aaactatggt agaacctaat tcaaaatttc ccaattcttc acctttttta agctctagat
    11221 tttcatattt tctagtaaaa ttatgagaaa attttgcatt agtttgtatg cttgtatcaa
    11281 atttaaaacg catttttcct acattttgag ctcctacaaa cacaagccaa aaaataccct
    11341 tttcattttg acattttaaa ctcactcttt cattttttac atacaaatta ctaatgcgtt
    11401 ctaaatgctt ttcatttaca ctataaaggg cgccacttgt gtaagttgca cttaaaattt
    11461 gcatattgca aggactatga tagcggtgat aatctcttgg agaaagatag atattaacat
    11521 aatcaagccc attttccaat tcttcttttt taaaactatc ctttaaaagc tcttctatgc
    11581 tataagtatg ccctttaatc gaaaaagcaa agagtgcatt atctgctaaa aaagcacttc
    11641 cgcactctaa aattttccca tcacttggac ttataaaacc ctcatttatc tctcttggaa
    11701 tttgcaaaga tcttgtaaaa agtgcattta agctttcata ttcacaagga gctttaaatt
    11761 cgctcatatc gatcttaaaa taattgacat atttttcatt gattattttt tgtataaaac
    11821 taggaaattc aacccctgct ataagtccaa aaattcttga actctcatta gaaaaactca
    11881 tttttcacct ttcaaattta aaattacaat ttcattggga gcaaaaactc ttaaactagg
    11941 cccccaaaaa cctgccccac tgctaacaaa aagtttggta ttttctccta aatcataaag
    12001 cccacgtata aaaccttgat gaagctttac taaaaacata aaagggaaaa tttgtccccc
    12061 atgcgtatga ccacttaaaa taagatcaaa atcacttaaa ttatagagca aggctgtttt
    12121 aggctgatga gcaagcaaaa tactagcttt acttgtgttt aaatctacct taatccttgc
    12181 taaatcagga gcgtacaaac ccttactaag ccctgctaaa tctccaagtc ctgcgatatt
    12241 tataaaacct aggtctaaat tttggttaag taaaattttc atattggtgt attctttaag
    12301 taaatttaaa acttcatcta ctccatgata atactcatga ttacccaaag cataaaaagt
    12361 tccataggtg gattttaaat cattaagcct tgaaatataa ttttgcaatt ctttaggatt
    12421 tgtatctact aaatccccca ctataaccac catatcaggc ttttgcaaat ttacttcaac
    12481 gatgagccta tccaaaaaat ccttatgcaa atttttaccc aaatgtatat ctgtaagcat
    12541 agctattttt aagtcgcgat caagtttggc aagatagata tccgtacttt gaatttcagg
    12601 cactcttata gcgttattta tacttgtata aatcaatact actgctaagc ttatgatagt
    12661 taaatcaaaa accgagcgca gggcaagact atatttttta tgcatcttac ccattaacat
    12721 taaaataagc cttataaaat caagccccaa agttataaaa aataaacaat aagtcggtgc
    12781 atacaatgca gccaaaaatt cgtaccaagt atcgcttagg tattcatttc tgcgaaagat
    12841 taaaaatatc gcttgagcta gaaaaagcag agtaaaaaca aaggcaaaaa ttttataaag
    12901 atacttaaag ataaaaattt tcttaatcaa tcttttataa atataaatat ttgccaaacc
    12961 aaaaatcaat aacgtaacaa aagaaaaaat aaaaaatatc ataatcctaa ttataacaaa
    13021 gcaaattaaa tatccatata aatttttctg ttataataag cttttaataa aatcaaaggt
    13081 tatcaaatgt atcgttttgc accttctcca acaggcgata tgcatatagg aaatttacgc
    13141 gcggctttat ttaattatat atgtgctaga caaaaaaata tggatttcat tttgcgtatc
    13201 gaagacaccg ataaggctag aaatataaca ggaaaagaag aagagattaa agaaattttg
    13261 catctttttg gcatttcatg gcagcattat tatgtacaaa gtgaaaattt aaaatttcat
    13321 cgtcaaatgg ctttaaagct tgtaagtgaa aaaaaagctt ttgcttgttt ttgcaccgaa
    13381 gaagagcttg aagcaaaaaa agaactcgcc aaaaagcaag gcaaggccta tcgctacgat
    13441 ggcacttgtc agaatttagc agacattgat gttttagaat gtgaaaaacc ctttgtaatt
    13501 cgccttaaaa aacctactca cactatgaaa tttacagatt ttatcaaagg agagttaagt
    13561 tttgaacctg aaaatatcga ttcttttgtg attatgcgaa cagataaaac ccctacttac
    13621 aattttgctt gtgcggtaga tgatatgctt gaaaatgtaa gttgcatcat acgcggtgaa
    13681 gatcatgttt caaatacccc aaaacaagaa catattcgtg caagtttagg ttatgataaa
    13741 gctatgactt atgcacattt acctattatc ttaaatgaag agggtgtaaa aatgagcaaa
    13801 agagaggctc attcttcagt aaaatg
//
LOCUS       DARAII010000038        13590 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.038, whole genome shotgun sequence.
ACCESSION   DARAII010000038 DARAII010000000
VERSION     DARAII010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13590)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13590)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13590
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.038"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..129)
                     /locus_tag="SB143_000914"
     CDS             complement(<1..129)
                     /locus_tag="SB143_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit K"
                     /protein_id="HEF9749463.1"
                     /translation="MVEKYFFIAIAMFIVGLIGILKRQNLIMLFISSEILLNAANLA"
     gene            complement(129..644)
                     /locus_tag="SB143_000915"
     CDS             complement(129..644)
                     /locus_tag="SB143_000915"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEF9749464.1"
                     /translation="MIEILAFTFFSVVVLGFFLVAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDSSKEFKEKLRAKKSFFLLVILSAVL
                     LLFMLLGFKHQNIAGDLALSDPNLFDYNKQLAFAIFSKYLLAFEFIAILLLIALICAI
                     VLTHKELTKER"
     gene            complement(641..1306)
                     /gene="nuoI"
                     /locus_tag="SB143_000916"
     CDS             complement(641..1306)
                     /gene="nuoI"
                     /locus_tag="SB143_000916"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEF9749465.1"
                     /translation="MKNYYLIDEKRKTPTSTWQKISQALKRSVKLELFVGLWVVMREM
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENARKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDADLLVKKTPNYYEVLQEREKNLCTDEECTLPNLAPQG
                     EVK"
     gene            complement(1316..2314)
                     /gene="nuoH"
                     /locus_tag="SB143_000917"
     CDS             complement(1316..2314)
                     /gene="nuoH"
                     /locus_tag="SB143_000917"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEF9749466.1"
                     /translation="MSDFAFFALEALIKCIIVIAIFATLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKLIFAIAPLIAAICAFVSLAAIPMLP
                     EFTLFGRTIQPLIADINVALLFVIGTSGLCFYAIFLGGLASNNKWSIIGAARGLVAII
                     SYESVGALALIAIVMLVGSFSLIDINNYQSDGFFSWLIFKQPLAFALFVIALFIETNR
                     TPLCLTENEADIVAGYGTEYSGLRWGMFFIGEYASMIAGAILITLLFLGGFNDFYFIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMRMCYLILIPLAVLNLLITAFAVLI"
     gene            complement(2307..4769)
                     /locus_tag="SB143_000918"
     CDS             complement(2307..4769)
                     /locus_tag="SB143_000918"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEF9749467.1"
                     /translation="MTIKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNIQRHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDMLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDVKQSGISNQKAKIYRVSNDFAFA
                     SLNKAARFAFDTQNEASKDEKAFKELVELFEKNEIRNIKFNSFITNEEALILQNFKKK
                     FGLNLINNEALKFKDFLEEFISNGGEFYNATTQDITKSDFLVVAGTLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPIEDAGIAKYSKNFISHTHKSGDEEQILYFLLQKFTQDENIK
                     ANLAEFFVNGNKEIEESINEEVIEQVVEKDEEGNEISKEVKKVVPKKVKKTIEVKRSV
                     FAKNLGIDEDKLEDLLLKKANFTLIIGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVTMICDLDKNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KKVVPTNAALEFDGYFLNDLANALGFDEEYTINYTKRLPINKGFSPLEFDSLDNFYTN
                     GGECKRGYDLNLECHKKSAKNEFIAPHLQNLTLQEDEILLYSANPSYQFGRFSNRASA
                     TNEAIFLGVSQNLAKEKNLQDKDLVKLKIKDKELSLSVRIDKDIKNGAFLPYFDEKID
                     TLSFFDERFIVANLEKLGASHE"
     gene            complement(4766..5458)
                     /locus_tag="SB143_000919"
     CDS             complement(4766..5458)
                     /locus_tag="SB143_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749468.1"
                     /translation="MSYERALCFVDMLSLKNKILCEKIQGENIYISCLEDKNLNAKFY
                     KCEIASLSYVLALLCKMSEMDNFQDLDEGYLSAESCLGEEEASEILDFLENAKYLIVD
                     ENINSYKDSENIKYFLNFLSQKYKLKILDSNEKECDFKNAKLSTLKELDSYDGLVLFR
                     ANLKDDNLHCSKQFLQIAKCKDKSEVEVLAKDFSLKTTLCLDENLQGTIAFLNYDQQG
                     FDFTPIRIKEAK"
     gene            complement(5455..5682)
                     /locus_tag="SB143_000920"
     CDS             complement(5455..5682)
                     /locus_tag="SB143_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEF9749469.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKESV"
     gene            complement(5679..6905)
                     /gene="nuoD"
                     /locus_tag="SB143_000921"
     CDS             complement(5679..6905)
                     /gene="nuoD"
                     /locus_tag="SB143_000921"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEF9749470.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPTIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRIASHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPEGFLNELLAFCDKFPKDIADYEALLDDNRIWRLRTENV
                     GVVSKEQAMNWGCTGVMLRGSGVRYDIRKEEPYLLYNEIDFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAALYKDTPPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(6907..7701)
                     /locus_tag="SB143_000922"
     CDS             complement(6907..7701)
                     /locus_tag="SB143_000922"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEF9749471.1"
                     /translation="MMRKYSDKKNAQLQNYYKDRFYHAPHTQKLDVNESAFKQDYEVL
                     KTEVDIINSFIELDFWVIEIKKEDNVKTLQMLHTLGYLNFTEASAIDFVADKNGFEVF
                     YQLLNLEKRLRVRVRTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWYGHPLLKTYPLQGDEFAQWYEIDKIFGKEYREVVGVEQRDPGFADDKDTLNF
                     ARLYHEVPKGGSRKEVSFKQEYQEDGGVAFVKKVKRDEAKILEKRR"
     gene            complement(7698..8201)
                     /locus_tag="SB143_000923"
     CDS             complement(7698..8201)
                     /locus_tag="SB143_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEF9749472.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLV"
     gene            complement(8183..8572)
                     /locus_tag="SB143_000924"
     CDS             complement(8183..8572)
                     /locus_tag="SB143_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEF9749473.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIVALIFILLDIEVVFLFPWALIFKDLGWFGLLE
                     VFVFILLLGVGFLYAYKKGAFAWQSIK"
     gene            complement(8690..9355)
                     /locus_tag="SB143_000925"
     CDS             complement(8690..9355)
                     /locus_tag="SB143_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEF9749474.1"
                     /translation="MLEVKNLGKFYEFKKHWYLKKEKHLIFENINFSLKENENLMILG
                     QSGAGKSTLARILCFLENPSFGEIIYKNLNPHSLDKTKQRLLRKEIQYCFQDQKAALN
                     PYKKIKNLIQDGLENFNIKKEQEKILEFFDRFNLKKQILEQKPYELSGGEATRVGLIR
                     ALILEPKVLILDEITSSLDMKNSKEILKFLYHYQQENLISYIFITHQDGFFVNFKCKK
                     MKL"
     gene            complement(9348..10058)
                     /locus_tag="SB143_000926"
     CDS             complement(9348..10058)
                     /locus_tag="SB143_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749475.1"
                     /translation="MKVRNLSLKLNQKKIFENISFDIKIAKSLMIVGESGVGKSLLGK
                     SLIRLLDPKFEINADEWSFNEVSVFNLNQNELRAFRSKVGLVLQDAELSLYPYLNIGN
                     LFHLILKTHTKLNQKDRKRYAFDLLEKLGFDDVDLLWHSYANELSLGMARRVSLALAL
                     LSKPQILICDEITASLDKENVQKIIQILKKLKNTLGLVCITHDLNLVNSLADEVLFLE
                     KNQAQLFRVDEFLRIYHA"
     gene            complement(10055..10810)
                     /locus_tag="SB143_000927"
     CDS             complement(10055..10810)
                     /locus_tag="SB143_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749476.1"
                     /translation="MFLILSALFAPLLAPFDVLESHLNHLHQAPNLTYYLGTDFLGRD
                     VFSRLLFALRISLFIGICSSFLSIFFALFYLFLARCFFYTFWMRILDLFLALPAFLLM
                     MFFQSFVGVNIFLMIFLIALVHWPFIARIVESELKRLENLDFYKASIVLGRTKFRAFF
                     KDLLPALKSLIFVLFIFNIIHAIATEATLSFFGLGLGFNIPTLGTLLNESSKAIFIGA
                     WWMILFPLLALMFLFLPLLWLGNYLQKIGGVRS"
     gene            complement(10836..11780)
                     /locus_tag="SB143_000928"
     CDS             complement(10836..11780)
                     /locus_tag="SB143_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749477.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLYFSKGSVAYANKVNSQSKELV
                     QRIEANLGLDKPLLGQYQIWLFKALKGDLSVSFLSGESVLKLIKERMANTLILSLSAL
                     VLLFLLSVFLALLGHYYKESFIDKLITFLAFNFFALPPFVLALFFVLIFGIFWQVLPI
                     TGTSDIGFEDDFFNRLKHLILPVLVLVLSHLALFLRIARNFINETFSQIFVQNLYARA
                     LREKDIYFLVLRYSLSPIIAYFGGSALSFMMGTYVVESVFAYEGLGSLLFESILFKDF
                     PMALALIFFSVLLAAFFTFLSDVFAWILNPRLKRLKFV"
     gene            complement(11781..13319)
                     /locus_tag="SB143_000929"
     CDS             complement(11781..13319)
                     /locus_tag="SB143_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEF9749478.1"
                     /translation="MLRWFILLFLLFFNVEAKIPKDTLIVAVENEISRINPAYSEDHD
                     AVINLVFSGLTRFDEHMSLKPDLAASWNVSKDGLSYDIFLREDVLWHDGVKFSADDVK
                     FSLEAFKNPKNNSSVYVNFEDIKSIEILNPYHLKITLSKPFPAFLDALSIGMLPKHLL
                     SDKDLNTASFNQNPIGTGPYKFVKWKKGEYVEFKANENFYLTKVKTPRLIIKHIFDPS
                     VASVELKNGKIDAALIDVSLLNIFKKDENFKILRERSADYRALMFNLENEFLKDIQIR
                     KALNYAVDKQSIVKNLLHDYGFVANHPLERSWADSKAFKTYEYNPKKAQDLILALGFK
                     KNDEGIFEKDGKILDFEIWTMSNDPLRVSLAGILQSEFKKIGVIAKVVAKPAGSFDYS
                     KVDSFLVGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTLN
                     LEERKKYYKEFIDALYENPPFIFLTYLDFALVYNAKLEGVKARNLGHHGVGFTWNIYE
                     WSKK"
BASE COUNT         4832 a         2664 c         1663 g         4431 t
ORIGIN      
        1 agctaaattt gctgcattga gtaaaatttc acttgaaata aaaagcataa tgagattttg
       61 tctttttaaa ataccgatta atcctacaat aaacattgca atagctataa aaaaatactt
      121 ttctaccatt atctttcctt tgtaagctct ttatgtgtaa gcacgatcgc acaaattaaa
      181 gcgattaaaa gcaaaatagc tataaattca aaagctaaaa gatattttga aaaaatagca
      241 aaagcaagtt gcttattata atcgaataaa tttggatcgc ttaaagctaa atcacccgcg
      301 atattttggt gcttaaagcc taaaagcata aacaaaagca aaacagcact taaaatcact
      361 aaaagaaaaa aactcttctt agctcttaat ttttctttaa attctttgga gctatcaaaa
      421 aacatcatag caaagctata aagcccaagc acagccccgc tataaactat gatttgtatc
      481 actcctaaaa actctgcatc aagtaaaaaa taaaaacccg ataaaaaaac cattccaccg
      541 gctaaagcag aaagagaata aagcatattt ttactcaaaa ccgctactaa gaaaaaacct
      601 aaaaccacta cactaaaaaa tgtaaaagct aaaatttcta tcatttaact tctccttgtg
      661 gagctaaatt tggcaatgtg cattcttcat cagtgcataa atttttttct ctttcttgta
      721 aaacttcata ataatttgga gtttttttca caagtaaatc cgcatccttt ctaaggctac
      781 ccgcaccctc aaattcaact tgatttttaa gcttatcaat aggagttaaa aaatcttgtt
      841 tatagccaaa ataagatctt tgttcggctg cattttcata ctctgtgcca tgaactatag
      901 caagttcagg acaaacttca gcacaaaaac cacaataaat acaacgcccc aaattaatac
      961 tataatttcc caccttttta cgagcatttt catctaaaga agtttccatc ctgatacaat
     1021 tactgatgca aatcttctca caaagcccac atcctatgca tctttcattt tcactttcta
     1081 taaaacgcat aagacggtgt acagcgcggt agcgattgtc aagctttacc ttttcaaagg
     1141 gatattttat ggttgcgcta ttgtttcttt ttagcatttc acgcataacc acccacaatc
     1201 ccacaaaaag ctctaatttc acacttcttt ttaaagcttg tgaaatcttc tgccaagtgc
     1261 tagtaggagt ctttcttttt tcatcaatta aataataatt tttcatcaca aactcctata
     1321 taagtactgc aaaggcagtg attaaaagat ttaaaaccgc caaaggaatt aaaattaaat
     1381 aacacattct catcacttga tcaggacgaa gttgtggaaa agctgctcta gcccaaaaat
     1441 accaaaagaa gataaaactt gattttacta tcatcataat ccagccaggt ataaaataaa
     1501 agtcattaaa accgcctaaa aataaaagcg taatcaaaat cgctcctgct atcatagaag
     1561 catattctcc tatgaaaaac ataccccatc tcaaacccga atactccgta ccataacccg
     1621 caacgatgtc ggcttcattt tcagttaaac aaagtggagt tctattggtt tcgataaata
     1681 aagcaatcac aaaaagtgca aaagctaaag gctgtttaaa aataagccat gaaaaaaatc
     1741 catcgctttg ataattgtta atatctatca aagaaaaaga tcctacaagc atcacaatag
     1801 ctattaaagc aagggctcct acactctcat aagaaatgat agctacaagc cctcttgcag
     1861 cacctatgat tgaccattta ttgttacttg caaggccacc taaaaatata gcataaaaac
     1921 aaagccccga agttcctata acaaaaagca aagccacatt aatatcagca atcaaaggct
     1981 gtatagtgcg tccaaataat gtaaattcag gaagcatagg aatagccgct aaagaaacaa
     2041 aagcacaaat agctgcaatc aaaggcgcta tagcaaaaat caatttttgt gaatttgaag
     2101 gtatgatatc ttctttagta aaaagtttta tcatatctgc tacaagctga ataagtccaa
     2161 aaggtcctac catatcaggc ccaatgcgtc tttgaaaata agccaaaacc tttctttctg
     2221 cataagttgc aagtcctgct aaggtagcaa aaattgcaat cactataata cacttaatta
     2281 aagcctctaa agcaaaaaaa gcaaaatcac tcatgactcg ctcctaattt ttctaaattt
     2341 gccacaataa atctttcatc aaaaaaactt agcgtgtcga ttttttcgtc aaaataaggt
     2401 aaaaaagccc cattttttat gtctttatct atacgcacgc taagacttaa ttccttatct
     2461 ttaatcttaa gttttacaag atctttatct tgcaagtttt tttcttttgc caaattctgg
     2521 ctcactccta aaaaaatcgc ttcattggtt gcacttgcac gatttgaaaa tctaccaaat
     2581 tgataactag gatttgcact gtaaagcaaa atttcatctt cttgtaatgt taaattttgc
     2641 aaatggggag ctataaattc atttttagca ctttttttat ggcattctaa atttaaatca
     2701 tatcctcttt tgcattctcc accattggta taaaaattat caagactatc aaattccaaa
     2761 ggagaaaaac ctttatttat agggagtctc ttagtataat ttatagtata ttcctcatca
     2821 aaacctaaag cattagccaa atcatttaaa aaatatccat caaattctaa agctgcattg
     2881 gttggaacta cttttttatc gtaatttaaa aaagtaccct cttgctgatt taaactcgca
     2941 ctagctaaat ttgcatgctc ttcataagaa aaactaaaat cacctttttc attgtagcct
     3001 aaagtcttgc cttcttgcgt gtttttatcc aaatcacaaa tcatagtcac acctaaggta
     3061 tttgtatgtg taggatttaa aaagacttta aaaggagttg tattttggat caaagctaat
     3121 aatttagcca attttttagc atttttatga aaataaaaat cacttcctat aatcaaagta
     3181 aaattagcct ttttaagcaa taaatcttct aatttatctt catctatacc caaattttta
     3241 gcaaaaaccg agcgttttac ttctatagtt tttttcactt ttttaggcac gacttttttc
     3301 acttctttag aaatttcatt accctcttca tctttttcta caacttgctc tataacttct
     3361 tcattaatac tttcttctat ttctttattc ccatttacaa aaaattcagc taaatttgct
     3421 tttatatttt catcttgagt gaatttttga agtaagaaat ataaaatttg ctcctcatct
     3481 ccgcttttgt gagtatgtga aatgaaattt ttagaatact ttgcaatgcc tgcatcttct
     3541 ataggatgaa aataaagtcc cgagccttta ttcatcacta aggcattgtt gattttatag
     3601 ctaagcgtag gcgcatcgta tcttaaaagc gttcctgcaa cgactaaaaa atcacttttt
     3661 gtgatatctt gggttgtagc attataaaac tcaccgccat tacttataaa ttcttccaaa
     3721 aagtctttaa attttaaagc ttcgttattg ataagattta agccgaattt ctttttgaaa
     3781 ttttgcaaaa tcaaagcttc ttcgtttgtg ataaagctat tgaatttaat atttctaatc
     3841 tcattttttt caaaaagttc tacaagctct ttaaaagctt tttcatcctt acttgcctca
     3901 ttttgcgtat caaaagcaaa tcttgcagcc ttatttaaac tcgcaaaagc aaaatcattg
     3961 cttacgcgat aaattttagc tttttgattg ctaataccgc tttgtttgac atcataatac
     4021 ataagctcac aatcacttga atgcggattt gaagcaggaa ttctttttaa ctcccaaata
     4081 ttagaagtat attggaattt agaacctatc aaagcccctg ttggacatac actagtgcac
     4141 tctccacaaa aagaacaatc aagcatatct ccatttgcag ggcctatcaa actcttttga
     4201 aatttcgtcc aaatcgcata agcgtcttta cccatacttt ctttaaagct attatctaca
     4261 ctatcacctc cgcgaggcac tgtttttaaa gcactttcgc cgattttatc cttacaaact
     4321 gtgatacaac gctcacacac tatacaaagt gcaggatcgt aattaatcat tccccaatgt
     4381 ttatgcggtt tatgtgtgtc tttaatccaa tgtctttgga tatttacacg gcttttatgg
     4441 gtgaaatttt gcaattcaca ctcgcctgat ttatcgcaaa ctccgcattc taaaggatgg
     4501 ttgatacaat aagcttgcat gatctcattt ctttcatccc aaagattttg taaatcactt
     4561 tctacaacca taccctcttt tgctttagta ttgcaagaat acactttttt accatcagcc
     4621 tctaccatac acatacgaca agccaaagtc gggctacagc ctgaaagata gcaaattgct
     4681 gggataaaaa tatcatttct tcttgctata tttaaaatat attcgccttc ttcaaaggcg
     4741 caatctatgc catttatttt aattgtcatt ttgcttcctt tatgcgaatt ggagtaaaat
     4801 caaaaccttg ttgatcataa tttaaaaagg ctatagtgcc ttgcaaattt tcatccaaac
     4861 aaagtgtggt tttaagacta aaatccttag ccaaaacttc gacttcactt ttatctttgc
     4921 attttgcaat ttgtaaaaac tgcttagaac aatgcaaatt atcatccttt aaatttgctc
     4981 taaaaagcac caaaccatca tagctatcga gctcttttaa agtactcaat tttgcatttt
     5041 taaaatcaca ttctttttca ttactgtcta aaattttaag tttgtatttt tggcttagaa
     5101 aatttagaaa atatttaata ttttcactat ctttgtaaga attaatattt tcatctacaa
     5161 ttaagtattt tgcattttct aaaaaatcta aaatttcact cgcctcttct tcaccaagac
     5221 aagattctgc actcaaatat ccctcatcta agtcttgaaa attatccatt tcgctcatct
     5281 tacaaagcaa agctaaaaca taactcaaac ttgcaatttc acatttataa aatttcgcat
     5341 ttaaattctt atcttcaagg caagaaatat aaatattttc accttgaatt ttttcacata
     5401 aaattttatt tttaagactt agcatatcca caaaacaaag cgctctttca taactcatac
     5461 gctttccttt ttaatcacta tagtccaatc cacttgatta aatttcaagg aatttaaaag
     5521 ctcacagcct tgttctttta caaaagaaaa acttttttca acaggagaaa aatcgccgat
     5581 ttcaaaaagc accactaaaa cctcaccttg ttttgcttct tttatgattt gtgctaaatc
     5641 ttcaaaaagc tctttgcttt ttcttaaatc tactcttctc atcgatctat ctcacctaaa
     5701 actatattta catttcccat aatggccaca acatcagcca aataagtccc cacaagcatt
     5761 tcttcaaaaa acgcacaatg ccaataacta ggcgttctag cctttaaacg ataaggtctt
     5821 cctgtaccat cactatggat aaaaaagcca agctcaccct taggactttc agtaggcaca
     5881 taaacttcgc ctttaggggg ttttaaacct tgagtgatta aaacaaaatg ctgcattaaa
     5941 gaataattct gcgttaaaat ttgttccttt gaagcactta catactcagg atgcgtagct
     6001 aaaatttcag gtggagtatc tttgtaaagc gcggcacatt gtctaagtat tttaagactt
     6061 tcgcgaaatt cttgcatata aactttatat ctagcataag aatctccttg cgttgcataa
     6121 ggcacgccaa agtctatttc attataaagc aaataaggct cttccttgcg tatatcatat
     6181 cttacgccac ttcctcttaa catcacccct gtacagcccc aattcattgc ttgttctttg
     6241 cttacaacac ctacattttc agttcttagg cgccaaattc tattatcatc taataaagct
     6301 tcataatcag cgatatcttt aggaaattta tcgcaaaatg ccaaaagctc atttaaaaaa
     6361 ccttcaggca aatcaagcat aactccacct attctcatag aagaatgtgt aagtcttgct
     6421 ccacaatatt tttctatcaa atccaaaaca tactcgcgtt ctctaaagca atacaaaaat
     6481 acactcatcg ccccaatatc aagtgcgtga gttgcaagcc aaagcaaatg cgatgcgatg
     6541 cgattaagct ctaaaagtat cattcttatc actgctgcac ggcgtggaat ttctaagccg
     6601 caaagctttt caacagctgc acaataagca taattattag ccgacgcagc gatataatcc
     6661 atcctatcag ttgtcgggat aaactcttga tatatcatat tttcagccat tttttccata
     6721 ccacgatgca tatagcctat ggtagggcgc gcttttacaa cctgctctcc atcaagttct
     6781 aaaataaggc gtaaatttcc atgtgctgaa gggtgctgtg gccctaaatt aataatcatt
     6841 tttgagtctt cttgctcaaa agctatattt tcataataag gttttaactt gctaggaatt
     6901 tgcattttaa cgccttttct ctaaaatttt tgcttcgtcg cgtttgactt tttttacaaa
     6961 agcaacgcct ccatcttctt gatactcttg tttaaaagat acctcttttc tagatccacc
     7021 ttttggtact tcatgataca atcttgcaaa attgagtgta tctttatcat ctgcaaaacc
     7081 tggatctctt tgctcaactc ctacgacttc gcgatattct ttaccaaaaa ttttatcgat
     7141 ctcataccac tgcgcaaatt catctccttg caaaggatag gtttttaaaa gaggatgtcc
     7201 ataccaatca tcaggcatta aaatacgctt taaattagga tgatttatga taaaaattcc
     7261 aaacatatca taaatttctc tttcgctcca atttgcgccc ttaaaaacat gtgctacgct
     7321 ttgcaagcgt tcttttacac ccacaaaagt tctaacacgc actcttaatc ttttttctaa
     7381 atttaaaagc tggtaaaata cttcaaaacc atttttatca gctacaaaat caatagcact
     7441 tgcttctgta aaatttaaat atcctaaggt atgaagcatt tgcagggttt taacattgtc
     7501 ttcttttttg atttctatca cccaaaaatc aagttctata aaagaattta taatatcaac
     7561 ttctgttttt aaaacctcat aatcttgctt aaatgcactc tcattgacat ccaatttttg
     7621 agtatggggt gcatgataaa acctatcttt ataataattt tgaagctggg catttttttt
     7681 atcgctatat tttctcatca caccaacctt tttggagcta ttttgcgact agctttttct
     7741 tttcgaattt ttttctgtaa aatcatcaag gcaaactgaa agctttcagg gcgtggggca
     7801 cagcctggta cataaatatc aactggaatg atcctatcta caccttgaac ggtagaataa
     7861 gtattaaaca taccccctgt atttgcacaa cttcccatag aaatcaccca tttaggatcg
     7921 ggcatttgat catatagcct tcttgtaaat tcagcgtgct tcttacataa agtccctgcg
     7981 ataatcatca cttcactatg gcgtggagaa gctctaaaaa tcgttccaaa tctatcaaaa
     8041 tcatatcttg atccccctgc tgccatcatc tcgatcgcgc aacaggcgag tccgtaggat
     8101 aaagcccaca aagaattact tctcccccat tgaacaagct tatctacgct tgttaaaacc
     8161 actggcaaac cactggcata atttacttga tgctctgcca tgcaaacgct ccttttttat
     8221 aagcatataa aaatccaact cctaaaagta aaataaaaac aaatacttct aaaagcccaa
     8281 accatcctaa atctttaaaa atcaaagccc aaggaaataa aaacaccact tctatatcta
     8341 aaagaataaa aatcaaagct acgatgaaga attgggaatt aatcttatta gcttgtttta
     8401 ccggaattgg accacattca taaattccaa gtcctagttt tttacgattt tttgcagcaa
     8461 aattattgcc aattttagaa gctaaaaaaa ccaatccaaa aaaaataaca ctagctagca
     8521 ctaacattaa aaatataccg aaataaggat gcgaagcatc aatgtgggac attttttctc
     8581 ctttttttaa acactttgaa tcactttaca acaaaaaata aaatttacac actttgttct
     8641 attttactct aaactttcta tattgaaact taataagaat aaatattgtt taaagtttca
     8701 tttttttaca cttaaagtta acaaaaaacc catcttgatg agtgataaaa atataagaaa
     8761 tcaaattttc ttgctgataa tggtataaaa attttaagat ttcttttgaa tttttcatat
     8821 caagactaga agtaatttca tctaaaataa gcacttttgg ctctaagatc aaagcgcgga
     8881 taagtcccac gcgagtggct tctcctccac ttaactcata gggtttttgc tctaaaattt
     8941 gtttttttaa gttaaagcga tcaaaaaatt ctaaaatctt ttcttgctct ttttttatat
     9001 tgaaattttc tagaccatct tggataagat ttttgatttt tttatagggg tttaaggctg
     9061 ctttttgatc ctgaaaacaa tactgaattt cttttcttaa aagtctttgt tttgttttat
     9121 caagactatg aggatttaaa tttttatata taatttctcc aaaacttgga ttttctaaaa
     9181 aacaaagtat tctagctaaa gtgctttttc ctgcgccact ttgccctaaa atcatcaaat
     9241 tttcattctc ttttaaagaa aaattgatat tttcaaaaat caaatgtttt tcttttttca
     9301 aataccaatg ctttttaaac tcataaaatt tacctaaatt tttaacttca agcatgataa
     9361 atccttaaaa attcatccac tctaaaaagt tgcgcttgat ttttttctaa aaaaagcacc
     9421 tcatctgcta aagaattgac taaatttaaa tcatgtgtga tacaaactaa gcctaaagta
     9481 ttttttaatt tttttaatat ttgaatgatt ttttgcacat tttctttatc taaagaagct
     9541 gtaatctcat cgcaaattaa aatttgaggc ttgcttaata aagctagagc taaactcact
     9601 cttcttgcca tacccaaact taattcattt gcataagaat gccacaataa atctacatca
     9661 tcaaagccta atttttcaag caaatcaaaa gcatatcttt tacggtcctt ttgatttaat
     9721 tttgtatgag tttttaaaat aagatgaaat aaatttccta tattcaaata cggataaaga
     9781 ctaagctctg catcttgtaa aacaagtccg actttagaac gaaatgcacg aagttcgttt
     9841 tgatttaaat tgaaaacaga aacttcatta aagctccatt catctgcgtt gatttcaaat
     9901 ttaggatcaa gcagtctgat taaggatttt cccaaaagac tttttccaac cccactctca
     9961 cccacaatca tcaaactctt agctatttta atatcaaaac ttatattttc aaagatcttt
    10021 ttttgattta attttaagct taaatttctt accttcaaga tcttactcca ccgatttttt
    10081 gcaaataatt tccaagccat aaaaggggta agaataaaaa cataagagct aaaagtggaa
    10141 acagtatcat ccaccaagcg cctataaaaa tagcttttga agattcgttt aacaaggttc
    10201 ctaaagtcgg tatattaaaa ccaagaccta agccaaaaaa actcaaagtc gcttcagtag
    10261 ctatggcatg aatgatatta aatataaaaa gaacaaatat taaagatttt aaagctggca
    10321 ataaatcctt aaaaaaagct ctaaatttag tccttcctaa cactatactt gctttataaa
    10381 agtctaaatt ttctagtctt tttaactcgc tttctacaat ccttgctata aaaggccaat
    10441 gcactaaagc gattaaaaaa atcattaaaa atatatttac acccacaaaa ctttgaaaaa
    10501 acatcatcaa caaaaaagca ggcaaagcta aaaaaagatc taaaattcgc atccaaaaag
    10561 tataaaaaaa acatcttgct aaaaataaat aaaaaagagc aaaaaatata gacaaaaaag
    10621 aactacaaat tcctataaat aaagaaattc tcaaagcaaa aagcaaacgc gaaaatacat
    10681 ctctacctaa aaaatcagtc cctagataat aagtcaaatt aggagcttgg tgcaaatgat
    10741 ttaaatgact ttctaaaaca tcaaaaggag ccagtaaagg cgcaaacaaa gcacttaaaa
    10801 tcaaaaacat taaaggcgta agaaaaagta ttatcttaaa caaatttcaa cctttttaat
    10861 cttggattta aaatccaagc aaaaacatca cttaaaaatg taaaaaaagc agcaagtaaa
    10921 acactaaaaa atatcaaagc caaagccata ggaaaatcct taaaaagaat gctttcaaaa
    10981 agcaaactcc caagcccctc ataagcaaaa acactctcaa ccacataagt tcccatcata
    11041 aaacttaaag cactgcctcc aaaataagct ataatagggc ttaaagaata tcttaaaacc
    11101 aaaaaataaa tatctttttc ccttaaggct ctagcgtata aattttgaac aaaaatttgt
    11161 gaaaaagttt cattgataaa atttctagct atgcgtaaaa acaaagctaa atgagataaa
    11221 acaagcacta aaacaggcaa aataagatgt tttaagcggt taaaaaaatc atcttcaaag
    11281 cctatatcac tagtccctgt tataggcaaa acctgccaaa aaattccaaa aatcaaaaca
    11341 aaaaataaag ccaaaacaaa aggcggtaaa gcaaaaaagt taaaggctag aaaagtgatc
    11401 aatttatcta taaaactttc tttataataa tgccccaaaa gagcaagaaa aacactgagt
    11461 aaaaacaaaa gcactaaggc gcttaggctt aaaatcaagg tatttgccat cctttcttta
    11521 atgagcttta aaacactttc cccacttaaa aaagaaacac ttaaatcccc ttttaaagcc
    11581 ttaaaaagcc aaatttgata ctgccctagc aagggcttat ccagccctaa attggcttct
    11641 attctttgaa ccaattcctt gctttgagaa ttgactttat ttgcatacgc tacactacct
    11701 ttactaaaat aaagcaaaac aaagcataaa aaagtgctaa aaaatgcgat aaaaatacta
    11761 aaaactaagc gttttagcac ttatttttta ctccactcat aaatattcca agtaaaacct
    11821 actccatgat ggcctaaatt tcttgcttta acaccctcaa gtttagcatt ataaactaag
    11881 gcaaaatcaa gataagttag aaaaataaaa ggaggatttt catacaaagc atcaataaat
    11941 tctttataat actttttgcg ttcttccaaa tttaaagtat ttctagcttt ttgcaaggct
    12001 atatccactt ttttatcatg ataatgtcca aaattccaac cctcatcatt taaagcacta
    12061 tcttgcgaac tttcaaatac cctaaaagtg tgaaaatcag gatctaaagg acttccccaa
    12121 cccactaaaa aactatctac tttagaataa tcaaaactgc ccgcaggctt tgctacaacc
    12181 ttagctataa cccctatttt tttaaactcg ctttgcaaaa ttcctgccaa actcaccctt
    12241 agaggatcat tactcatagt ccaaatttca aagtctaaaa tcttgccatc tttttcaaaa
    12301 ataccctcat cgtttttctt aaaacctaaa gccaaaatca aatcttgggc ttttttagga
    12361 ttgtattcat aagttttaaa agctttagaa tccgcccaag aacgctctaa aggatgattg
    12421 gctacaaaac cataatcatg caaaagattt ttgactatac tttgcttatc aacagcataa
    12481 tttaaagcct ttcttatttg aatatctttt aaaaattcat tctctaaatt aaacattaaa
    12541 gctctataat cagcagatct ttcacgcaaa attttaaaat tttcatcctt tttaaaaata
    12601 ttcaataaag aaacatcaat caaagccgca tcaattttgc catttttaag ctctacgctt
    12661 gcaaccgaag gatcaaaaat atgtttgatg ataagtcttg gggtttttac ttttgtaaga
    12721 taaaaattct cattagcttt aaactctaca tattcgccct ttttccattt tacaaattta
    12781 taaggacctg tgcctatggg attttgatta aaagaagcag tatttaagtc tttatcacta
    12841 agtaaatgtt taggaagcat tcctatactt aaagcatcta aaaatgcagg aaaaggttta
    12901 gaaagcgtga ttttaagatg ataaggattt aaaatttcta tacttttaat atcttcaaaa
    12961 ttcacataaa ctgaagaatt atttttagga tttttaaaag cttcaagact gaatttaaca
    13021 tcatcggcac taaatttcac tccatcgtgc cacaaaacat cttcacgcaa aaagatatca
    13081 tagctaagtc catccttgct aacattccac gacgcagcta aatcaggctt taagctcata
    13141 tgctcatcaa aacgcgtaag tcctgaaaat acaagattaa tcaccgcatc atgatcttcg
    13201 ctatatgcag gatttatcct tgaaatttca ttttccacag ctacgattaa agtatctttt
    13261 ggaattttag cctcaacatt gaaaaacaat aaaaatagta aaataaacca tctaagcact
    13321 tgtaactcct caaatttaaa attaaaaaaa ttataaaata aaaaataaga agccacaagc
    13381 cctatagggg gataatttgc tttaaattat ggattttatt tatcaattaa attgcttctc
    13441 actacattca tccaataaat acgctatatg ctgccaagat atacccgtag catcgcttaa
    13501 tcctatctcg caagtgcttg atgtactaaa cccgcgctta atatttgttt tggcataaaa
    13561 ttttttaaag ccctttgtag cattaatatt
//
LOCUS       DARAII010000039        13384 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.039, whole genome shotgun sequence.
ACCESSION   DARAII010000039 DARAII010000000
VERSION     DARAII010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13384
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.039"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..205)
                     /locus_tag="SB143_000930"
     CDS             complement(<1..205)
                     /locus_tag="SB143_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEF9749479.1"
                     /translation="MQYLYAPWRSEYFEKEKSECPFCDCANKIKSDEELGVIFRAKYC
                     FGVMNRYPYSAGHFMIIPYLHEEH"
     gene            complement(216..992)
                     /gene="trpC"
                     /locus_tag="SB143_000931"
     CDS             complement(216..992)
                     /gene="trpC"
                     /locus_tag="SB143_000931"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEF9749480.1"
                     /translation="MILDKIFEKTKEDLKERKAQLPYDMLGRSLASNPFFPKDVKAAL
                     KRIENEVRIIAEVKKASPSKGVIRENFDPLDIALKYEKNGAAAISVLTEPHFFQGSLE
                     YLSMIRRYTHAPLLRKDFIFDEYQILEALVYGADFVLLIARMLSMKELKRLLEFTRHL
                     GLEALVEIHDKEDLSKAIFSGADIIGINHRNLDDFSMDMNLCEKLIPQIPNSKIIIAE
                     SGLEDKDFLRHLQNLGVDAFLIGEYFMRQNDEGEALKALL"
     gene            complement(989..2266)
                     /locus_tag="SB143_000932"
     CDS             complement(989..2266)
                     /locus_tag="SB143_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEF9749481.1"
                     /translation="MYRNLLFVLIGFFLTACGASKTIIAYPDYKQQKSNEFDLRIMKA
                     YNYEYFNQYEEARDEFLALFRDYNITNFLENAFLLTLANNLDKKEEINNIAKPYLDKS
                     DNLKRLSALYALNSYNLKEAQELIQGLLKKKSDDPRNLELYGDVLIRQNNLKDAIKYY
                     QLAYNQVQNEEILFKLVGVYAILNDTSSIKNILENSKNINGCTLKTCILLAKIYNDKG
                     NSKALQEIYIELYNITKNKSFILALIELLSSQNKDKEALHFALKYNADDDMKLYLYQR
                     LKLYNKAKDLSMQIYKRTQEKEYLLRAAVFEFEEANLNKKITPQVVALVSEKFSNAID
                     ENSDALYLNYYGYLLIDYDLDLKKGMKLVELALKKEPQNLYYLDSLAWGYYKQGDCKK
                     AWEILKQTLEDKEFANSDESKAHAKAIKACIKP"
     gene            complement(2239..2613)
                     /locus_tag="SB143_000933"
     CDS             complement(2239..2613)
                     /locus_tag="SB143_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEF9749482.1"
                     /translation="MIFNKDFSYGFNENACQECGGKCCTGESGNIFANKEELKALREH
                     LQLDEKEFALKYLKKVGFRMSFKEVEFEDGFACIFFDKEKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQEELKKECIGICYLS"
     gene            complement(2603..3304)
                     /locus_tag="SB143_000934"
     CDS             complement(2603..3304)
                     /locus_tag="SB143_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEF9749483.1"
                     /translation="MQDSIKLAQLSDGYRYNSDSLLLADFVLEMGIKNQVLEVGSGCG
                     IIGILLKKFVSNLDLSLLDIQQENIELIHRNLKQNNIQAGVLHEDFRNFQNDKKFDFI
                     VCNPPFYRDGAHEGKNTHKNISKFQKYLTLNEFIVRSNALLKPMGVLYFCYEALALDK
                     ICLVLESKKLKLTKIRFVHTHQNISARLVLVQARKSVKSPCEILPPFFIYKNENLSEQ
                     MQEIHSRFRLESYDI"
     gene            complement(3307..3459)
                     /locus_tag="SB143_000935"
     CDS             complement(3307..3459)
                     /locus_tag="SB143_000935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749484.1"
                     /translation="MLKFFFTISLSSLLFAQNFIDFASQNNALKQEQNTSKENTPLKR
                     IKIPTH"
     gene            complement(3510..3586)
                     /locus_tag="SB143_000936"
     tRNA            complement(3510..3586)
                     /locus_tag="SB143_000936"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3550..3552),aa:Arg,seq:cct)
     gene            complement(3615..5690)
                     /gene="fusA"
                     /locus_tag="SB143_000937"
     CDS             complement(3615..5690)
                     /gene="fusA"
                     /locus_tag="SB143_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEF9749485.1"
                     /translation="MSRSTPLKRVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(5703..6173)
                     /gene="rpsG"
                     /locus_tag="SB143_000938"
     CDS             complement(5703..6173)
                     /gene="rpsG"
                     /locus_tag="SB143_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEF9749486.1"
                     /translation="MRRRKAPVREVLPDPIYGSKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(6243..6626)
                     /locus_tag="SB143_000939"
     CDS             complement(6243..6626)
                     /locus_tag="SB143_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012147885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEF9749487.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKASAK"
     gene            complement(6766..8205)
                     /gene="aldA"
                     /locus_tag="SB143_000940"
     CDS             complement(6766..8205)
                     /gene="aldA"
                     /locus_tag="SB143_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HEF9749488.1"
                     /translation="MTTYLNYIDGKFIPHNGEFIEVLNPATKEVISRVASASLEDTKR
                     AIEAAKKAQKVWEAKPAIERANHLKEIASLIRKNANFLTEVLMQEQGKTRVLASIEIN
                     FTADYMDYTAEWARRYEGEIIQSDRANEHIYLYKSAIGVIGGILPWNFPFFLIARKMA
                     PALLTGNTIVIKPSSETPNNAFEFAKLVSQSSLPKGVFNLVAGKGSVVGYELSSNENI
                     GMVSLTGSVEAGTRVMEAAAKNIIKVSLELGGKAPAIVCKDADIDLAVEAIKASRICN
                     NGQVCNCAERAYVHTSIYDEFVDKFVKAMSKVSVGNTLKGDFDMGPLVNQAGVDNALA
                     MLQRATAKGAIVECGGKITDTSGYYFPASVLTNVKHEDEIMQKEIFAPILPIAKFDTL
                     DEAIDMANDCEYGLTSSIYTQNLDIAMRASREIKFGETYINRENFEAMQGFHAGFRKS
                     GIGGADGKHGLEEYLATHVVYLQYNTNKQ"
     gene            complement(8219..8536)
                     /locus_tag="SB143_000941"
     CDS             complement(8219..8536)
                     /locus_tag="SB143_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEF9749489.1"
                     /translation="MQRYGQIIKIKKEKIEEYKNLHAKPYEGVCEMIKKCNMQNYSIY
                     LFGEYLFAYFEYVGADFEADMAKMARDESTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            complement(8512..9306)
                     /locus_tag="SB143_000942"
     CDS             complement(8512..9306)
                     /locus_tag="SB143_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEF9749490.1"
                     /translation="MQKIFDAHLHLWDLDKMPISWLKGNEKLEQNYDFFRAKEEYEGF
                     EFLGAMYVETNSDDLEKEALFALEQKKLHNLLLCLADLKYKEELSSFREVMHTSKKEA
                     KRLFEADFEEKIEILKTFNIPFEACMKNEELSFLEKFLNKNPNLKVVLNHLGSPKIDR
                     LNEYKKDLNLLKKFPNLYIKLSVPDDFSEQTSKEFIYELFAFFKENFSEDKFIFGSNY
                     PVAKIAPAKWAKLIIESKIFKNLNKIFYQNALSIYKEDRCKDMAKS"
     gene            complement(9308..10549)
                     /gene="fucP"
                     /locus_tag="SB143_000943"
     CDS             complement(9308..10549)
                     /gene="fucP"
                     /locus_tag="SB143_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HEF9749491.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANKYSYKMGIIFGLALYAVGALLIIPATNLASFHL
                     FLFAFFVLACGIGSLETSANPYMVKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASAEQIEAALLANMGNVQLVYVGIAAIVILILIAFVLNKLPEGSAVSDD
                     YKQKDDSKPIHVFKHRHFNLGLLAQFSYIANQVAAGAFFINYVVDHNEGLKDAQAAYY
                     FSIALVAFMLGRIVSTPLMKVIKGEKILGLYSLINVLICFGLYFTSGFLSTILLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPLIIGFINDHYGTGMGYL
                     AMAPLFLYVAWYGFVGSKIKA"
     gene            complement(10560..11348)
                     /locus_tag="SB143_000944"
     CDS             complement(10560..11348)
                     /locus_tag="SB143_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEF9749492.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWAMEGGIPVVFSRSMPKE
                     HDEELKNLCKSYEFYEIDLKNYEQIEELIKKVVTKHGGIYALVNNAGANDNLHIENTS
                     TKDLIKSYENNLFHYYAMAKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     IGFTREWACAFAKDSVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKTIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEI"
     gene            complement(11363..12634)
                     /locus_tag="SB143_000945"
     CDS             complement(11363..12634)
                     /locus_tag="SB143_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749493.1"
                     /translation="MGHLKLTKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEMDAGISETAYALGAGIFFVGYALFEVPSNLLLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGETSFYILRFFLGLTEAGFSPGIILYLSYFFPAIYRSKAYGIYQMGVPIAFVFGS
                     LISGFILDYASNMYFKNWQWMFLIEGGITVLVGVFCLFYLDSHPKDAKWLDVKEKTVL
                     LKNIEICNSKAKDYSIKDIFKNILVWKFVFVYFCIQLSVYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKRSWNLYAILFLLLASLSMIASTFVANLAP
                     FLFFISLAVIGFIVIQPIFWNLPTQVLKGKGGAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLITLALIAVLGVLILVHLKMTLN"
     gene            complement(12644..>13384)
                     /locus_tag="SB143_000946"
     CDS             complement(12644..>13384)
                     /locus_tag="SB143_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEF9749494.1"
                     /translation="GDFSDLILGTECGGSDSYSGLSANPALGSLSDFVIDEGGAVILA
                     ETTELIGCEAILAKRAKNDEIAKKVYDKILGYENLVKSFRADIRGANPSPGNIAGGLS
                     TIEEKSLGCVYKAGTRTLMDVIDYAKPIVSKGLTFMNTPGNDIEQLSAMVAGGANICV
                     FTTGRGTPTGSAIVPTIKMSSNTFCYENMNDAIDINAGSIIDGVKTKEEVRDELIELI
                     VRISDGELVKAEINEQNDFSVWRLATTC"
BASE COUNT         4378 a         2698 c         1689 g         4619 t
ORIGIN      
        1 tatgctcttc atgcaaataa ggtattatca taaaatgccc tgcagaataa ggatagcggt
       61 tcatcacgcc aaaacaatac ttagctctaa aaatcactcc taattcttcg tcgcttttga
      121 ttttattagc acaatcacaa aaagggcact cgctcttttc tttttcaaaa tactcacttc
      181 gccatggtgc atacaaatac tgcattttta tccttttaaa gcaaggcttt caaagcctct
      241 ccttcatcgt tttgacgcat aaaatattct ccgattaaaa aagcatcaac gcctaaattt
      301 tgcaaatgcc ttaaaaaatc tttatcctct aaaccacttt ctgcgataat aatttttgaa
      361 tttggaattt gtgggatgag tttttcgcat aaattcatat ccatagaaaa atcatccaaa
      421 ttgcgatgat ttatgcctat aatatcagct cctgaaaaaa tcgctttgct caaatcttct
      481 ttatcgtgaa tttccaccaa ggcttcaagt cccaaatgtc ttgtaaattc aagcaatctt
      541 ttaagctctt tcatacttaa cattctagcg ataagcaaaa caaaatccgc cccataaacc
      601 aaagcttcta aaatttgata ctcatcaaaa ataaaatcct ttcgcaacaa aggagcgtgc
      661 gtataacggc gtatcatgct aaggtattct aaactccctt gaaaaaaatg cggttctgtt
      721 aaaactgaaa tagcagcagc tccatttttt tcgtatttta aagctatatc taaaggatca
      781 aaattttccc ttataacccc tttacttgga ctagcttttt taacctctgc gataattctt
      841 acttcatttt ctattctttt taaagcagct ttaacatctt taggaaaaaa aggattcgat
      901 gctaaagatc gtcccaacat atcataaggc agttgcgcct tacgctcttt taaatcttct
      961 ttagtttttt caaaaatttt atctaaaatc atggtttaat acacgccttt attgcttttg
     1021 catgagcctt gctctcatca gaatttgcaa attctttatc ctctaaagtt tgcttcaaaa
     1081 tttcccaagc ctttttacaa tcaccttgtt tataataccc ccacgctaaa gaatccaaat
     1141 agtataaatt ttgaggctct ttttttaagg caagttcaac caatttcata ccttttttaa
     1201 gatctaaatc ataatctatc aataaatacc cataataatt caaatacaaa gcatcactat
     1261 tttcatcaat cgcattagaa aatttttcgc tcacaagagc aacaacctgc ggagtgattt
     1321 ttttattcaa atttgcttct tcaaattcaa acactgctgc acgcaaaaga tattctttct
     1381 cttgagtgcg tttataaatt tgcatactaa gatctttagc cttgttgtat aattttaacc
     1441 tttgatataa ataaagcttc atatcatcat ctgcattata ttttaaagca aaatgcaatg
     1501 cttctttgtc tttgttttga gaacttaaaa gctcgataag agctaggata aagcttttgt
     1561 tttttgtaat attataaagc tctatataaa tttcttgtaa agctttgcta ttgcccttat
     1621 cattataaat ctttgctagt aaaatgcaag ttttaagagt gcaaccatta atattttttg
     1681 aattttctag tatattttta atgcttgaag tatcatttaa tatagcataa acacccacga
     1741 gcttaaacaa aatctcctcg ttttgaactt gattataggc tagttgataa tattttatgg
     1801 catcttttaa attattttgg cgtattaata catctccata aagctctaaa tttcttggat
     1861 catcactttt tttctttaaa agcccttgga taagctcttg agcttcttta agattataag
     1921 aatttaaggc ataaagtgca ctaagacgct taagattatc actcttatca agataaggct
     1981 tggctatatt atttatctct tcttttttat caaggttgtt tgctagagtt agcaaaaatg
     2041 cattttctaa aaaattagta atattataat ctctaaaaag tgccaaaaac tcatccctag
     2101 cttcttcata ttgattaaaa tattcataat tataagcttt catgatcctt aaatcaaatt
     2161 cattgctctt ttgctgctta taatcggggt aagctataat cgtttttgaa gccccacacg
     2221 cagttaaaaa aaagcctatt aagacaaata acaaattcct atacattctt tttttagctc
     2281 ctcttgatgt gttttaaaat attcccaaaa aggaaaggtg cggcattgct tcggacgaaa
     2341 atcataaata gagcaatttc ttttttcctt atcgaaaaaa atacatgcaa atccatcttc
     2401 aaattcaact tccttaaaac tcattctaaa gcctaccttt tttaaatatt tcaaagcaaa
     2461 ttctttttca tctaattgca aatgctctct caaagccttt aactcttcct tgtttgcaaa
     2521 aatatttcca ctttctcctg tgcaacattt tccaccgcat tcttgacaag cattttcatt
     2581 aaatccataa gaaaaatctt tattaaatat cataactttc caacctaaat ctagagtgaa
     2641 tctcttgcat ttgctcactc aaattctcat ttttatagat aaaaaaaggg ggtaaaatct
     2701 cacaaggcga ttttacactt tttctagctt gcaccaagac aagtcttgct gaaatatttt
     2761 gatgagtatg tacaaaacga attttagtta attttagctt tttactctct aaaacaaggc
     2821 aaattttatc taaagccaag gcttcgtaac aaaaatacaa tacccccata ggttttaaca
     2881 aagcattgga tctaacaata aattcattta aagtcaaata tttttgaaat ttacttatat
     2941 ttttatgcgt atttttaccc tcatgcgccc catctctata aaaaggtgga ttacaaacta
     3001 taaaatcaaa ttttttatca ttttgaaaat ttctaaaatc ttcatgcaat actccagctt
     3061 gtatattatt ttgttttaga ttacgatgaa tgagttctat attttcttgt tgtatatcaa
     3121 gcaaagataa atctaaatta gaaacaaatt ttttaagtaa aattcctata ataccacatc
     3181 ccgaacctac ttccaagact tgatttttaa tacccatttc taaaacaaaa tcagctaaaa
     3241 gtaaagaatc gctgttgtaa cgataaccat cactcaattg ggctaattta atactatctt
     3301 gcattttcaa tgggttggaa ttttaattct ttttaaagga gtattttctt tgcttgtgtt
     3361 ttgttcttgt tttaaagcat tattttgact tgcaaaatct ataaaatttt gagcaaaaag
     3421 taaggaagat aatgatattg tgaaaaaaaa tttcaacata attttccttg aaatttatat
     3481 tctatttaag tttatttaaa aaatttaaat ggtgtccacg gcgagattcg aactcacggc
     3541 ctcaaaatta ggaattttgc gctctatcct gctgagctac gaggacagaa agcgggaaaa
     3601 atcccgctaa aaatttaacc gtttcttttt ttgatgattt catccgcaac atttttagga
     3661 acttcatcat aatgatcaaa ttccatagaa taagtcgcac gaccttgagt ttgacttcta
     3721 agatcagtag aataaccaaa catttcagcc aaaggacaaa atgctgtgat gattttattt
     3781 ccaccacgct catccatgct atttacttga ccacggcgtt tgttaagatc tccaataaca
     3841 tcgcccatgt aatcttcagg agtttctact tcaactttca tcataggctc taagatcaca
     3901 gcacctgctt ttctagcacc ttctttaaag cccatagaag cagcaagttt aaacgccatc
     3961 tcagatgaat ccacctcgtg ataacttcca tcataaacag ttactttaac atcttccaca
     4021 ggataacctg ctaaaacacc attttgcaat gcttcttgaa cacctttatc aaccgcagga
     4081 atatattctt ttggaattac cccacctttg atatcattaa caaactcata tccactacct
     4141 ggctcaagtg gctcaaggcg taagaataca tgtccgtatt gaccacgacc gcctgattgc
     4201 ttagcgtatt tgtattcttg ttcaacagtt tttctaatgg tttcgcggta agcaacttga
     4261 ggttgtccca cttcagcttc cactttaaat tcacgaagca tacgatcaac aataatttca
     4321 aggtgtaatt cacccatacc tgaaatgata gtttgaccac tttcttcatc cgtagaaact
     4381 ctaaagcttg gatcttcttg agctagttta tttagcgcaa tagacatttt ttcttgatct
     4441 gctttagttt ttggttctac tgcaacagaa ataacaggat ctgggaaatc cattctttca
     4501 agaattacct tatctttttc acttgcaaga gtatcccctg ttaaagtatc tttaagtcct
     4561 acaactgcac cgatttctcc tgcgtaaaga actttaattt cttctctttt attagagtgc
     4621 atttttaaca aacgaccaat tctttctttt ttatctttgg ttgagttata agcataagaa
     4681 ccgctttcta aacatccacg ataaacacgc acgaaagtaa gttgtcctac aaatggatct
     4741 gtcataattt taaatgcaag tcctgcaaat tcgccatcat cggttgattt tacagaaact
     4801 tctgtgccgt cttcatattc tcctttgata ttagcaactt catctggagc tggcaaataa
     4861 gccacaacag catcaagtaa aggttgaaca cccttatttt taaatgcagt tccacaaagc
     4921 ataggaacaa tagaaagact taaacaccct gctttaatcc ctgttttaat ctcttcaagg
     4981 cttaattctt ctccgcctaa atatttttcc atcaactcat ctgaagtttc tgaaaccgct
     5041 tctatcattt tagtgcgata ttcttctgct ttttctttaa gctcagcagg aatttctttt
     5101 tctacataat ctgttggctt agtatcatct tcccaaacta aagctttcat agttacaaga
     5161 tcgataacac ctttgaaatt atcttcagcg ccgattggaa tttgaagcgg aactggatta
     5221 gcttttaagc gattacgaat ttgatcttct acattataga agtttgcgcc gattctatcc
     5281 attttattta caaaaactat tcttggaaca ccatatttat ttgcttgtct ccaaacagtt
     5341 tcgctttgag gttgcacccc acctactgaa caaaatactg caacagcacc atcaagaaca
     5401 cgcatagatc tttcaacttc tatggtgaaa tccacgtggc ccggagtgtc tataagattg
     5461 atttgatgat ctttccaaaa acaagtcgtc gcagcagagg taatagtaat acctctttct
     5521 ttttcttgct ccatccagtc catagtcgca gcaccatcat gcacttcgcc tattttatga
     5581 ctcatacctg taaagaaaag aattctctca cttgtagttg tttttcccgc atcaatatgt
     5641 gcagcaatac cgatatttct aacccttttt aaaggagtac ttctagacat tttttctcct
     5701 tcttaccaac gatagtgagc aaatgcttta tttgcttcag ccattttgta agtatcttct
     5761 tttttcttaa atgaagcacc tttgctattt gccgcatcta aaagttcagc tgcaagttta
     5821 tctatcatag ttctttcact tctttttctt gcaaaagaaa taatccaacg aattgctaaa
     5881 gcttgttgtc tagcaggacg aacttcaact ggaacttgat aagttgcacc acctacacga
     5941 cgagatttta cttctaataa aggcttaata ttttcaatcg catcattaaa aatatcaata
     6001 ccttttttct cgccaccttt tttatcaata gcttccaaag caccatacat aatcgtagta
     6061 gctgtgcttt ttttaccatc atacattaaa gaattaataa attttgtgat tactttgcta
     6121 ccataaatcg gatcaggcaa gacttctctt accggagctt ttcttcttct cattattttt
     6181 ccttcaaatt ttaaatttta ctcaaacaaa atcaaatcta acggatttgt ctgtctaaaa
     6241 aattacttag cacttgcttt agggcgtttt gcaccatatt tagaacgaga aactgttctt
     6301 tttgcaacac ccgcagtatc aagcgcacca cgcacgatgt gatatttcac acctggtaag
     6361 tcttttaccc tacccccacg cactaaaaca atgctgtgtt cttgtaggtt gtgaccttca
     6421 ccgccgatat agctaatcac ttcaaagccg ctagtaagtc ttactttggc aacttttctt
     6481 aatgctgagt ttggtttttt aggagttgtt gtataaaccc tagtgcaaac tccccttctt
     6541 tgtgggcaat ttttaagcgc tggagattta gatttttcta aaactttttt gcgctctttt
     6601 ctaaccaatt gatttatggt aggcacaata attcctttct ttaaaaaata taataaactt
     6661 tagatgatat ctaaatttta cttacaaaaa tataaactag agatgtttta gtagtgacta
     6721 aaattaaaaa tcctatccca tctaaaacta gatgagataa taaaattatt gtttattagt
     6781 attatactgc aaatatacca catgggtagc taaatattct tcaagaccat gttttccatc
     6841 agctccgcct atgccacttt ttctaaagcc tgcatgaaaa ccttgcatag cctcaaaatt
     6901 ttcacgatta atataagttt caccaaattt aatttctctg ctagctctca ttgctatatc
     6961 taaattttgt gtataaatag aacttgtaag accatattca caatcatttg ccatatcaat
     7021 agcttcatca agtgtatcaa atttagcaat aggtaaaatc ggagcaaaaa tttctttttg
     7081 catgatctca tcttcgtgtt taacattagt aagaacgctt gcgggaaaat aatacccact
     7141 tgtatcagtg atttttccac cgcattctac aatcgctcct ttagctgtag ctctttgaag
     7201 cattgccaaa gcattatcaa ctcctgcttg attgaccaat ggtcccatat caaaatcacc
     7261 ttttaaggta tttccaacac ttactttact catggctttt acaaatttgt ctacaaattc
     7321 atcataaatg cttgtatgca cataagctct ttcagcacaa ttacaaactt gtccgttatt
     7381 gcaaattcta cttgctttaa tcgcttctac tgctaaatca atatccgcat ctttgcacac
     7441 tatagctggc gcctttccac caagttctaa agaaactttg ataatatttt tagctgcagc
     7501 ttccattact ctagtccctg cttcaacact tcctgtaaga cttaccatac ctatattttc
     7561 attgcttgat aattcatatc ctactacact gcctttacct gcaactaagt taaaaacacc
     7621 ttttggtaaa gaactttgcg aaacaagctt tgcaaattca aaagcattgt ttggagtttc
     7681 actgcttggc tttataacaa tagtatttcc tgttagtaaa gcaggtgcca tcttccttgc
     7741 gattaagaaa aatggaaaat tccaaggtaa aattccacca attaccccaa tagcactttt
     7801 atataaatat atatgctcat tagccctatc gctttgtatg atttcaccct catatcttct
     7861 agcccactcg gccgtataat ccatataatc tgctgtaaaa ttaatctcta tgctagccaa
     7921 aactctggtt tttccttgct cttgcattaa aacttcggtt aagaaattag catttttgcg
     7981 tattaaacta gctatttctt ttaaatgatt tgctctttca atcgctggtt tagcctccca
     8041 aactttttgt gcttttttgg ctgcttcaat cgctctttta gtatcttcta aagaagcgct
     8101 agctactctt gaaatcactt ctttggtagc cggatttaaa acttcgataa attctccatt
     8161 atgtgggata aactttccat caatataatt taaataagtt gtcatttttt ctcctttttt
     8221 agtctaagtg aaatacttct tccatattta gccatttttg tcctgcatag cctaaagata
     8281 tttgacaagg atctgttact ttccaccatt tttgtgtgct ttcatctctt gccattttag
     8341 ccatgtctgc ttcaaaatca gcacctacat attcaaaata tgcaaataaa tattctccga
     8401 acaaataaat ggaataattt tgcatattgc acttcttaat catctcgcaa accccttcat
     8461 aaggctttgc gtgaagattt ttatattcct ctattttttc cttttttatc tttatgattt
     8521 ggccatatct ttgcatctat cctccttgta aattgataaa gcattttgat aaaatatctt
     8581 atttaagttt ttgaaaattt tactttctat gatgagttta gcccacttag ctggagctat
     8641 ttttgccaca ggataattgc taccaaatat gaatttatct tcactaaaat tttctttaaa
     8701 aaaagcaaaa agctcataaa taaattcctt tgaggtttgt tctgaaaaat catctggaac
     8761 cgaaagctta atatataaat ttggaaattt tttcaaaaga tttaaatctt ttttatactc
     8821 atttaaacga tctatttttg gacttcctag atgatttaaa accactttta aatttggatt
     8881 tttatttaaa aatttttcta aaaaactgag ttcttcattt ttcatacaag cttcaaaagg
     8941 tatattgaaa gtttttaaaa tttctatttt ttcttcaaaa tctgcttcaa atagtctttt
     9001 agcttctttt ttactcgtgt gcattacttc cctaaaagag ctaagttctt ctttatattt
     9061 taaatccgct aaacaaagca aaagattatg aagctttttt tgctctaaag caaataaagc
     9121 ttccttttct aaatcatcgc tattggtttc aacatacata gcacctaaaa attcaaatcc
     9181 ttcatattct tcttttgctc taaaaaaatc ataattttgc tctaattttt cattgccttt
     9241 taaccatgaa ataggcattt tatccaaatc ccaaagatgc aaatgtgcat caaaaatctt
     9301 ttgcatttta agcctttatc tttgagccaa caaaaccata ccaagccaca tataaaaata
     9361 aaggtgccat tgctaaatac cccatacctg tgccataatg atcattaata aaacctataa
     9421 ttaaaggcat aatcgctcca cctactatac tcattacaag caaagaaccg cctagtttta
     9481 cttgatttaa aggcaaattc tttgttgcaa ctgcaaaaat agtaggaaaa gagatagaca
     9541 taaagaaaaa taaagcaatt aaaagaatag tacttaaaaa accactcgta aaatacaagc
     9601 caaagcatat gagtacatta attaaagaat aaagtcctaa aattttctca cctttaatca
     9661 ctttcatcaa aggagtagaa acaatacgtc ctagcataaa tgcaaccaaa gctatagaaa
     9721 aataataagc agcttgcgca tcttttaatc cttcattatg atctactaca taattaataa
     9781 aaaacgcccc tgctgcaact tgatttgcta tatatgaaaa ttgcgctaaa agtcctaaat
     9841 taaaatgtct gtgtttaaaa acatgtatag gcttagaatc atctttttgt ttataatcat
     9901 cacttaccgc acttccttct ggaagcttat ttagaacaaa agcaattaaa atcaaaataa
     9961 caatagcagc aattcctaca taaacaagct gaacattacc catattggct agcaatgcag
    10021 cttcgatttg ctccgcactc gcaccctctt cttgcttggt aatagataaa aataaagctc
    10081 cacctataat aggtcctaca aattgtccca aaccattaaa actttgtgcg gcattgattc
    10141 taaaacttgc atttttttca tctccaagtt ttaccatgta aggatttgca ctagtttcta
    10201 aagaaccaat gccacaagct aaaacaaaaa acgcaaataa aaacaaatga aaagaagcta
    10261 aatttgtagc aggtataata agcaaagccc ctacagcata aagtgctaaa ccgaaaataa
    10321 tccccatttt ataagaatac ttattggcta tataacccgc tggcaaggct atgataaaat
    10381 aagctccaaa ataagcaaat tgtaaaaatc cactttcatg ctggctaatg tgaagatgat
    10441 tttgaaaatt tttattcatt acatcgataa gcccataact tactccccat aaaaagaaaa
    10501 gagaagtcac caaaacaata gctattttta tattcttaga atcagtcatt ttttactcct
    10561 taaatttcat cccaattcaa tgctctatcc aaatgaacat aacctccatc tggcattaaa
    10621 atttgtcctg tagtatgtga agccaaagga ctaagtgtaa aaactgcagt atttgcaatc
    10681 tcttctatag tggtaaaacg atgtcctaaa ggtatagttt ttgcgatttt ctcatattgc
    10741 tctttagggt tagggaaatt ttgcaaccat ttttcataaa gaggagtcat aacttcagct
    10801 ggtgctatgg catttactct aacactatct ttagcaaaag cacaagccca ttccctagta
    10861 aaacctattt gagcagcttt tgccgaagca taagctgaag ttcttccttg tcctgtgata
    10921 cctgttttac tcactatatt taaaatactg ccttgctctt ttttaatata aggcaaacac
    10981 tcttttgcca tagcataata atgaaaaaga ttgttttcgt aagatttaat caaatcttta
    11041 gtgcttgtgt tttcaatatg caaattatca tttgcacctg cattatttac aagggcataa
    11101 attccaccat gttttgtaac aacttttttt ataagttctt caatttgttc ataatttttt
    11161 agatcaattt cataaaattc atagcttttg cataaatttt ttaattcttc gtcgtgctct
    11221 ttaggcatag atcttgaaaa aactacagga attccaccct ccatagccca taatttagca
    11281 ataccataac caatgccttt agcaccacct gtaataatac aaaccttatt tttaattttt
    11341 aaatccattt attctccttt atctaattta aagtcatttt taaatgcact aatatcaata
    11401 cgcctaaaac tgctattaat gctagtgtta taagtccaaa ctcaacccca aaatgatttt
    11461 ctatgtatgt ttttaaagtc ggtgcgacaa aaccacctaa atttcctaaa gaccctataa
    11521 gtgcgatagc agctgcacca ccttttccct ttaaaacttg agttggtaaa ttccaaaata
    11581 taggctgaat tacgataaaa cctataacag ccaagctaat aaaaaataaa aatggtgcta
    11641 aattcgcaac aaaagtcgaa gctatcatgc ttaaacttgc taataataaa aataaaatcg
    11701 catataaatt ccaagagcgt tttttatccg ccaatgaggt aaatattggc aaggcgataa
    11761 aaacaaaaat ccaaggaata gcatttaaaa gccctacttc aaaacccaca tttatttgca
    11821 atatttgagc tattttactt ggtaaataaa aaagaacgcc ataaacgctt aattgtatgc
    11881 aaaaataaac aaatacaaat ttccatacta aaatattttt aaaaatatcc ttgatagaat
    11941 aatcttttgc cttggaatta caaatttcta tattttttaa taaaacagtt ttttctttta
    12001 catccaacca tttagcatct tttgggtgag agtcaagata aaacaaacaa aaaacaccca
    12061 ccaaaacagt aattccgccc tcgattaaaa acatccactg ccaattttta aaatacatat
    12121 ttgatgcata atcaagtata aaaccactga ttaaagaacc aaaaacaaaa gctataggca
    12181 cacccatttg ataaattcca taagcttttg atcgatatat agctggaaaa aaataactaa
    12241 gatacaaaat aatccctgga ctaaaacctg cttcagtcaa ccctagaaaa aaccttaata
    12301 tataaaaact tgtttctcct tgtataaaaa tcatagccat agttacaagt ccccaagtga
    12361 tcattatgcg acttaaccaa atcttagctc ctaatttatg caaaagtaaa tttgaaggca
    12421 cttcaaacaa agcataacca acaaaaaata tcccagcacc caaagcatac gcagtttcgc
    12481 taatacccgc atccatttcg atgtgagatt tcacaaaact aatatttgtc ctatcaagca
    12541 tagaaagaca aaacatcaaa acaattaaag gtagaatacg ccaagatatt ttcttacaaa
    12601 ccagctctaa ttttgttaat tttaaatgcc ccatttttag tccctaacaa gttgtagcaa
    12661 gtctccaaac tgaaaaatca ttttgctcgt ttatttcagc ttttaccaat tctccatctg
    12721 aaattcgcac gattaattct ataagctcat cacgcacttc ttcttttgtt tttaccccat
    12781 ctataatgct tcctgcgtta atatcaatag catcattcat attttcataa caaaaagtat
    12841 tagaactcat tttaattgta ggcacaatag cagaacccgt tggagtgcca cgacctgtag
    12901 taaaaacaca aatatttgct ccacctgcaa ccatagcact aagttgttct atatcattac
    12961 ctggcgtatt cataaaagta agtcctttag aaactatagg tttggcataa tcaatcacat
    13021 ccattaaggt tctggttcct gctttataaa cacaacctaa ggatttttcc tctatagtac
    13081 taagcccacc tgcaatgttt cccggactag ggtttgctcc tcgaatatca gcacgaaaag
    13141 acttgactaa attctcataa cctaaaatct tatcatatac ctttttagct atttcatcgt
    13201 tttttgctct cttagcaagt atagcttcac aacctataag ctctgtagtt tctgctaaaa
    13261 ttaccgcacc accctcatca atgacaaaat cactcaaact tcctaaagca ggattagcac
    13321 taagtccgct atagctatca cttccaccgc attctgtgcc taaaatcaaa tcactaaaat
    13381 ctcc
//
LOCUS       DARAII010000040        13379 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.040, whole genome shotgun sequence.
ACCESSION   DARAII010000040 DARAII010000000
VERSION     DARAII010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13379
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.040"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..594)
                     /locus_tag="SB143_000947"
     CDS             complement(<1..594)
                     /locus_tag="SB143_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase II"
                     /protein_id="HEF9749495.1"
                     /translation="MNKETIKAHKISDEEYEQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAIFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEG"
     gene            complement(605..1933)
                     /gene="mnmE"
                     /locus_tag="SB143_000948"
     CDS             complement(605..1933)
                     /gene="mnmE"
                     /locus_tag="SB143_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEF9749496.1"
                     /translation="MNDTIVAIATAHGVGSISIIRLSGERALEIALKLSKKNELCPRY
                     ATFTKLFNQKNEFLDEAIVIYFKAPFSFTGEDIVEFQVHGGFSVSEILLEELISLGAR
                     LAEPGEFSKRACLRGKMSPLKALNIQDLILAKSANAAKIIARNMQGSLGELLDKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSESKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYKRAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DEIEQIGIELSKKSIEDADIILTIFDNSRKKDEEDENIFKLLSQSDKKIFYLLNKSDL
                     KTQFDKPCDIDFIELSVQNDIQILKEKLEKYLNSLDSDGFLVSSIALINACKISSEAI
                     LRAKELLSENSLELFAFELNLAIGELAKFTKDFDRNEILDEMFGNFCLGK"
     gene            complement(1926..2777)
                     /locus_tag="SB143_000949"
     CDS             complement(1926..2777)
                     /locus_tag="SB143_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEF9749497.1"
                     /translation="MRIEAKDLQSALTEASKSLECSVIDLEYEIIQYSKNGFLGFWRK
                     NAIIEARAKKQPYSKKNSRKDFNASKNDVHRNYEKPYRKFDDRSKIDNKKEFEVEARE
                     VKPKEKYVVKSDGIFDSFHKESGGTRNKEDILDEIRIQLENLLKATCFNISLVELRMY
                     DEESVFIRLDGDDAALLIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQG
                     MQIYLQGVIEKVKINGRGQTKPLDGVLIKIALEKLRAEFPNKYVGIKQNNDQRYVVIN
                     DFFKKDE"
     gene            complement(2782..4377)
                     /gene="yidC"
                     /locus_tag="SB143_000950"
     CDS             complement(2782..4377)
                     /gene="yidC"
                     /locus_tag="SB143_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEF9749498.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQQIKLEQNIT
                     TTQADSQNATNINAPQQNRQANLNVAATSNTIPQDKIIADIKSEHFEAQIDSLGRIVN
                     FYLQDKKYQNEKGEAINLISKGNLPYPLEMRFSDPAINTQAFSVPYAADMSEVFIDEN
                     GSKTLKLTQQLSDLIVEKKITFYSKGNYDIEVKLSKNINYFISPGYRPSIAVDSYTVH
                     GALVMDDQETIHTYEDGDMDKDENIKNAWMTSAFDRYYAAFFYNFEKPLNVTISKDAQ
                     DNPLVFAMSDNEFKAGGYMGPKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLH
                     NHIGNWGWAIVIMVLIIRIILFPLTYKSMISMNKLKDLAPKMKELRERYKGDPQKMNM
                     HMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPY
                     FILPILMGVTMFIQQLITPMTIQDPMQAKIMKFLPIIFTFFFITFPAGLTLYWFVNNL
                     CSLVQQWVINKMFAKEHHKKQAE"
     gene            complement(4374..4718)
                     /gene="yidD"
                     /locus_tag="SB143_000951"
     CDS             complement(4374..4718)
                     /gene="yidD"
                     /locus_tag="SB143_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEF9749499.1"
                     /translation="MVCLKTLRFYQKFLSPLKPPVCRYYPTCSEYAFWQFQKRNCILA
                     FFSSFFRILKCNPFFKGGFDYPKITKNITSCNLCFKPIFLAQKQLYFLYIPHHQDKSF
                     YLVKIIFQRTNK"
     gene            complement(4715..5041)
                     /gene="rnpA"
                     /locus_tag="SB143_000952"
     CDS             complement(4715..5041)
                     /gene="rnpA"
                     /locus_tag="SB143_000952"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEF9749500.1"
                     /translation="MKTFGKFSENEEFSAVYKTGKKWYCDGIIIFYLKNDEQKMAVVA
                     SKKVGKAVIRNRSKRILRALFTQFENKLQNGKYIFVAKSEITQFPFSRLEKNLKWGLK
                     KLECLK"
     gene            complement(5038..5172)
                     /gene="rpmH"
                     /locus_tag="SB143_000953"
     CDS             complement(5038..5172)
                     /gene="rpmH"
                     /locus_tag="SB143_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEF9749501.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            5311..5790
                     /locus_tag="SB143_000954"
     CDS             5311..5790
                     /locus_tag="SB143_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEF9749502.1"
                     /translation="MPKFEITTLKREELDILLEMIKEFAQYEEMEDSLQCSKEKLETS
                     LFDNQFARAFLLKEDENIIGYMIYFYTFSSFLGNGGIYLEDIYIRKNFRKKGYGRAVF
                     KFLGQICKKENLKRLDWVCLNENILGINFYEGLKAQHLKQWRNYRLSGENLEKLCEL"
     gene            5787..6395
                     /locus_tag="SB143_000955"
     CDS             5787..6395
                     /locus_tag="SB143_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEF9749503.1"
                     /translation="MIRTLHYLKAMGYDFTDENLKLHSKIENFKDLRKNIQECTLCHF
                     SKSRCFTLMENEIKNASLMIVDTLAHKNENEKGVLLNSKKGERLKFYLKEILGLCEKE
                     FYFSYLFKCFSNGKFDDFSLQSCLPFFWNELELVQPKMILCLGEYPFKSLGFSDFNAL
                     RGEIFAYKNFFIMASFELEFIEKNPSCEKIFIQDLKKIKGFL"
     gene            6392..7588
                     /locus_tag="SB143_000956"
     CDS             6392..7588
                     /locus_tag="SB143_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749504.1"
                     /translation="MKKIFLILCLCFGFVFAKEQKLVDVKPAENFYPKISTQECDSNC
                     LLELLEARLYLSFLSEFVDQHDQFLSNIYAKLLNSITDFDKNLQKITSVKLAIIIPEK
                     TIKSYSNTIINSSIAYLLSQRAEIKVKVFLTGTEDNDKIRSTLEQVQAQGYQYAIAAL
                     TLKGVNQLKDYSGDMKIFIPTLHKNNVSFSNLNKNIIFGSIDYDAQVLALLNKANSDI
                     AAFSDGSMLSSNLNSRVLEQNANTRFYRVEGEKLDFYRLLRSQGSLNNASIFLNTPLI
                     KTALISSQLRVYNIQPFVLLSTQINYNSTFLSLTQEGDRKNFILANSIDNHDDNLSYL
                     NEIFNQSIDYNWIAYATSIGTDYFYTQFLNTKSDSLFDEKIQNSQILYKVRLMKGSKA
                     SFEELK"
     gene            complement(7580..7954)
                     /locus_tag="SB143_000957"
     CDS             complement(7580..7954)
                     /locus_tag="SB143_000957"
                     /EC_number="3.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbgC/FadM family acyl-CoA thioesterase"
                     /protein_id="HEF9749505.1"
                     /translation="MKIRIYYEDTDAGGVVYHSNYLKFCERARSEIFFAKNAPIFDAN
                     KGHFLLTKANCFFIKSAKLGDIIEVKTKLLKIKNASVDIAQEIYRDEILLFKVELTLA
                     YIQNEKPAKIDAGIKKLFEELF"
     gene            complement(8230..9516)
                     /locus_tag="SB143_000958"
     CDS             complement(8230..9516)
                     /locus_tag="SB143_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749506.1"
                     /translation="MSETYEIYTPDGLTLDVEKDTNKILFKENIKPTGNYTEEYSKAV
                     FKSYHIMKNSPYKDYQPKYLDPNFYTGKASTLLEFTEWQSIYLKDPIKGSIAPWTKAE
                     KAYYKSLKTKRERYKYLIIRSGIRSTVIDIPYDAYANVDGKGYLINEEYAYIYDEVNN
                     NKETLKSSLFGQEWGIAAGILGKPEYFVRSKNHGFNARMIQCFILYIQLTGGGYEELG
                     IKRGIYNYADNLLEIGIGMAGIHKNPLRVKLVKELAKTIQPNEFGMLPFIDEIMGADW
                     VIDLNKYDFAYDEEGRIIWALYNDIEKGKLKDPRDVDSTPESRNEFDDAMDGYRNGMK
                     TNFDVDIRNERDERSAKLTMDTLILSAKLAALTPPQGYPNAPYYFTPERLEWIYKRGY
                     LDKLLDPRIPAIYRYNFPRELRAKILKFGEENGIKD"
     gene            complement(9558..10295)
                     /locus_tag="SB143_000959"
     CDS             complement(9558..10295)
                     /locus_tag="SB143_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749507.1"
                     /translation="MKYNYIKWNKEEKCAIFFPDIDYSLWKKTQLKENAYNNPSLIIS
                     SCLITKMDILELFEYYILFICGKSMGVSRWECNNLILLGTCNIDNLSNPFSLNTPKPT
                     YISEYINILGQLFLAGYIDFGSYCDEEDRNKIDYPSNLSYYKEDKYQAWIYFRDNFFY
                     QDKFIRDLDDPETLDEGGYSLILNDVSWDTPQYWSQYNIWVATTPKGIKYFNEILAPK
                     FYNKYKDLEVEIDDKGNIIRWIGKINR"
     gene            complement(10285..10602)
                     /locus_tag="SB143_000960"
     CDS             complement(10285..10602)
                     /locus_tag="SB143_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005023074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749508.1"
                     /translation="MLKNKYNLKTSKELGLGRSKNVFWVKDNKQIKEIWEEITDGADI
                     LKDINQDKLGGTIKMRKLDDQTIIQYKKASKSGGETIEVNSNKPRGNLRTIHIENGVK
                     NEV"
     gene            complement(10844..12028)
                     /locus_tag="SB143_000961"
     CDS             complement(10844..12028)
                     /locus_tag="SB143_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749509.1"
                     /translation="MLNYSILENSLNIKLECLSKQSLEYKDLISNTLKEQTTTQVDKK
                     QSIAKLHALLENQNLECIHGGKVILKSNKGKSFKSDGIPIMLESDLLNSSIVACPNTI
                     AGVSVPCTKVVNVKGSLSQKKVNNEYVILQELISACKTDKGFALKVSFTPTKFKFDHS
                     FDPEEGLGEQSKNQIELKEARLRMYYKEHKYQKDNLFTNLYLNDTLYQNEQGLDKLEL
                     SKNDLFNLNDINVLNTLKQDFSKDYEFKECEIRLGMHLLKLIFVIPKNIAKVYKSAYK
                     EFKNKDLGVGYFTQLHEYDKDYRENENIIHHRVFLAPAKMQKIGFEIAKGLDEWLDNE
                     NVCRFNVYTKDYFNANDKDMLISDNIKDDTNTTQAHTNENYNNTQEIIPDNVIRIQTQ
                     DG"
     gene            complement(12383..12802)
                     /locus_tag="SB143_000962"
                     /pseudo
     CDS             complement(12383..12802)
                     /locus_tag="SB143_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779558.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         4441 a         2176 c         1754 g         5008 t
ORIGIN      
        1 accttcagcc ttagcataga agatatcttc acttttacaa acccctaaag caaaggcatt
       61 aactaagata tttccattaa aacactcatc aaaagcacat tctccaccta tagttggcac
      121 acccatgcaa tttccataat gagaaattcc atttaccaca cctttaacaa ggtatttttg
      181 atgtttgccg catttttcat catggatatc gccaaatttt aaagaattca gccctgcaac
      241 cactcttgca cccatggtga aaacatcacg caaaattccc cctactcctg tagccgcacc
      301 cgcaaaaggc tctataaaac taggatgatt gtgactttct actttaaaaa tggctgccat
      361 gccttgacct atatcgataa cccctgcatt ttcacctggc ccttgaatca cccaaggagc
      421 tttggttgga aaaccattga gatatttttt actggattta taagaacaat gctcgctcca
      481 catcgcagaa atgacaccta gttcaagtaa atttggctca cgccctaaaa tttctaatat
      541 ttgttcatat tcctcatcgc tgattttatg tgcttttatt gtttctttgt tcatttgtat
      601 cctttcattt tcctaaacaa aaattaccaa acatttcatc taaaatttca tttctatcga
      661 aatctttagt aaattttgca agttcgccaa tggctaaatt taactcaaag gcaaacaact
      721 ctaaagaatt ttcactgagt aattctttag cccttaaaat cgcttcgctt gaaattttac
      781 aagcattaat aagagcgata gaactaacta aaaatccatc actatctagc gaatttaaat
      841 atttttcaag cttttctttt aaaatttgaa tatcgttttg aacactaagt tctataaaat
      901 caatatcaca aggtttatca aattgagttt ttaaatcact tttatttaaa agataaaaaa
      961 tctttttatc gctttgactt aaaagcttaa aaatattttc atcctcttca tctttttttc
     1021 ttgaattatc aaaaatagtt aagataatat ctgcatcttc aatgctcttt ttactaagct
     1081 ctataccgat ttgctcaatc tcatctttac tttctcgaat tcctgcagta tcaataatac
     1141 gcaataaatg cgtacctagt ttaaaactct cttctatggt atcacgagtc gttccagcta
     1201 tatcagaaac aatagctctt ttataagaaa gcaaggcatt taaaagagaa gattttccaa
     1261 cattaggctt acccacaata gcgattttaa aaccctctat caatcctttt ttactttctg
     1321 aaagtgtata aatttctttt agaattttag aattttcttc acacattgtg ctaatttgtt
     1381 ctagtaaatc agaaggcaaa tcatcatcag cataatcaat actcgtttcc acaaaagcta
     1441 aagtttttac caaatctgtg cgaattttat caagaagttc tcccaagctt ccttgcatat
     1501 ttcttgcgat aatctttgct gcatttgcag attttgctaa gattaaatcc tgtatattta
     1561 aagcctttaa gggactcatt ttacccctta aacaagctct tttactgaat tctccaggtt
     1621 ctgctagtct tgctcctaag cttatcaact cttcaagcaa aatttcactt acactaaaac
     1681 caccatgcac ttgaaattca actatatctt cacctgtaaa actaaaaggg gctttaaaat
     1741 agatcactat ggcttcatca aggaattcat ttttttgatt aaaaagcttt gtaaaagttg
     1801 catagcgggg gcaaagttca ttttttttgc ttaattttaa agcaatttca agcgctcttt
     1861 ccccgcttaa tcttataatc gagatagaac ccactccatg ggcagttgca atagctacta
     1921 tagtatcatt catctttttt aaaaaaatcg ttaattacaa catatctttg atcgttgttt
     1981 tgtttgatac ctacatattt atttggaaat tcagccctta atttttctaa agcaatttta
     2041 atcaaaactc cgtctaaagg ttttgtctga cctcttccat tgattttaac tttttcaatt
     2101 acaccttgaa gataaatttg cattccttga atttgatttt ctaaaaattg tgcaatttca
     2161 agacgaacta aaagattgta tttgaggttg atccaattat gcaaaagata agaaatagcc
     2221 ttgtaacgat gagcctcttt accaattagc aaggctgcat catcaccatc taaacggata
     2281 aaaacgcttt cttcatcata cattcttaac tccactaaag agatattaaa acaagttgct
     2341 tttaataaat tctctagctg tatgcgaatt tcatctaaaa tatcttcctt attgcgagtt
     2401 cctccgcttt ctttgtgaaa gctatcaaaa attccatcgc ttttgacaac atatttctct
     2461 ttaggtttaa cttctctagc ctctacttca aattcttttt tattgtctat tttacttcta
     2521 tcatcgaatt tgcggtaagg tttttcataa tttctatgaa catcattttt ggacgcatta
     2581 aaatcttttc tagaattttt tttactataa ggctgttttt tagctctagc ttcgatgata
     2641 gcatttttgc gccaaaagcc taaaaatcca tttttggaat actgaatgat ttcatattct
     2701 aaatctataa ccgagcattc aaggcttttt gaagcttctg ttaatgcact ttgaagatct
     2761 tttgcttcaa ttctcatttt ttcactccgc ttgtttttta tgatgttctt ttgcaaacat
     2821 tttattgatt acccattgtt gtaccaaaga acaaagatta ttaacaaacc aataaagagt
     2881 aagacccgct ggaaaagtaa taaagaaaaa ggtaaaaatg ataggcaaga atttcataat
     2941 ttttgcttgc ataggatctt gtatggtcat aggggtgatt aattgctgta taaacattgt
     3001 tacacccatt aaaataggta aaataaaata aggatccatt actgataagt cgtgtatcca
     3061 aaacgcccaa ggggcagctt ttagctctat agcattgagt aatacgcgat aaatagcaaa
     3121 gaaaatagga atttgtaaaa gtataggcaa acatccgctc ataggatttg caccatgttt
     3181 tttataaagc tccatcatat gcatattcat tttttgagga tcgcctttat agcgctctct
     3241 taattctttc attttaggtg ctaagtcttt aagtttattc atggaaatca tagatttata
     3301 ggttaatggg aataaaatta tacgaataat taaaaccatt ataacaatag cccaacccca
     3361 atttcctata tgattatgta aaaaatttaa aaattcaaac ataggcttag ctataaaagt
     3421 aaaccaacca tactctacaa cagcttcaag acgcggatct atagatctta aaatcacatg
     3481 ttctttaggg cccatataac caccggcttt aaattcatta tcactcatcg caaataccaa
     3541 aggattatct tgagcatctt tactgatagt tacatttaaa ggtttttcaa aattataaaa
     3601 gaaggcagca taatatctat caaaagccga agtcatccaa gcatttttaa tattctcatc
     3661 cttgtccata tcgccatctt cataagtatg gatggtttct tgatcatcca taaccaaagc
     3721 tccatgaact gtatagctat ctactgctat gcttggacga taacctggac ttatgaaata
     3781 atttatattt ttacttaatt taacttcaat atcgtaatta cccttagaat aaaaagtgat
     3841 tttcttttca acaattaaat ctgaaagctg ttgggtaagt tttagtgtct tactgccatt
     3901 ttcatcgata aaaacttcac tcatatccgc agcataaggc acgctaaagg cttgcgtatt
     3961 gatagcagga tcgctaaaac gcatctctaa aggataaggc aaatttcctt tgcttataag
     4021 attgatagct tcgccttttt cattttggta ttttttatct tgaagataaa aatttacaat
     4081 tctgcctaaa gagtcaatct gcgcttcaaa atgctcgctt ttaatatcgg caatgatttt
     4141 atcttgaggt attgtattgc tagttgcagc tacatttaaa ttcgcttgtc gattttgttg
     4201 tggagcattg atattggttg cgttttgaga atcagcttgt gtagtagtaa tgttttgctc
     4261 taattttatt tgttgcttag gtataaaaaa ataatcatac acaacaaaaa ataaaaaaga
     4321 aataactaca gctaaaagaa tgcgtttttg ctgaaaaata ttattcgaat tattcactta
     4381 tttgtccttt gaaagataat tttaacaaga taaaaacttt tatcctgatg gtggggtata
     4441 tataaaaaat aaagctgttt ttgcgccaaa aaaataggct taaaacatag attacaagaa
     4501 gtaatatttt tagtaatttt tggatagtca aatccccctt taaaaaaagg attgcatttt
     4561 aaaattctaa aaaaacttga aaaaaatgca agaatacaat ttcttttttg aaattgccaa
     4621 aaggcgtatt ctgaacatgt gggataatat ctacaaacag ggggttttaa agggcttaaa
     4681 aatttttgat aaaagcgaag agtttttaaa catactattt taaacattct agttttttta
     4741 atccccattt tagatttttt tctaatctag aaaaaggaaa ttgagtgatt tcacttttgg
     4801 caacaaaaat atattttcca ttttgaagtt tgttttcaaa ttgagtaaat aaagctctta
     4861 aaatacgttt tgagcgattt ctaatcactg cttttccaac ttttttacta gcaacaactg
     4921 ccattttttg ctcatcattt ttaagataaa agatgataat gccatcgcaa taccactttt
     4981 tacctgtttt atatacggct gaaaattctt cgttttcgct gaatttacca aaagttttca
     5041 cacagcgagt ctttttctac ctttagcgcg tcttgcgttg atcaccttgc gaccattttt
     5101 agtcttcata cgaacgcgaa aaccatgagt gcgttttctt ggagtaccat gtggctgata
     5161 agttcttttc atttcaattt tccttaaaaa aatataaaat aagcttgtat tttatcttaa
     5221 tcttacttat aaattgcttt taattaagag tattttttat tttattttga taaatttgca
     5281 aaatcaaatc aacaaaggaa tatttaaaaa atgccaaaat ttgaaattac aacactcaag
     5341 cgtgaagaat tggatatttt gcttgaaatg attaaagaat ttgcgcaata cgaagagatg
     5401 gaagattctt tacaatgttc aaaagaaaaa cttgaaactt ctttatttga taatcaattt
     5461 gcccgagcat ttttacttaa agaagatgaa aatatcatag gatatatgat ttatttttat
     5521 actttttcat cctttttggg aaatggtgga atttatttag aagatattta cataagaaaa
     5581 aattttcgca agaaaggtta tgggcgagca gtttttaaat ttttgggaca aatatgcaaa
     5641 aaagagaatt taaaaagact tgattgggtg tgtttaaatg aaaatatttt aggtataaat
     5701 ttttatgagg gtttgaaagc gcagcattta aaacaatggc gtaactatcg tttaagtgga
     5761 gaaaatttag aaaaactttg tgagctatga taagaacttt acattatcta aaggccatgg
     5821 gttatgattt tacggatgaa aatttaaaac tccattcaaa aatagaaaat tttaaagatt
     5881 taagaaaaaa cattcaagaa tgtactctgt gtcatttttc caaatcacgc tgctttacgc
     5941 ttatggaaaa tgagataaaa aatgcctctc ttatgatcgt tgatacacta gcgcataaaa
     6001 atgaaaatga aaaaggagtt ttgttaaatt caaaaaaagg agaaagatta aaattttatc
     6061 tcaaagaaat tttaggactt tgcgagaaag aattttattt ttcttatctt tttaaatgtt
     6121 tttctaatgg aaaatttgat gatttttcgc tacaatcttg cttgccattt ttttggaatg
     6181 agttagaact tgtccagcct aaaatgattc tttgtttagg tgagtatcct tttaaaagct
     6241 tgggtttttc agactttaac gctcttagag gagaaatctt tgcttataaa aatttcttta
     6301 taatggcaag ttttgagctt gaatttatag aaaaaaatcc aagctgtgaa aaaattttta
     6361 tacaagatct aaaaaaaatt aaaggatttt tatgaagaaa atatttttaa tcttatgttt
     6421 atgctttggc tttgtttttg ccaaggagca aaaattagtc gatgttaaac ctgctgaaaa
     6481 tttttatcca aaaataagca cacaagaatg tgactcaaac tgcctactag aacttttaga
     6541 agcaaggctt tatcttagtt ttttgagcga atttgttgat caacatgatc aatttttatc
     6601 aaatatttat gccaaacttt taaattctat tacggatttt gacaaaaatt tacaaaaaat
     6661 cacttctgta aagcttgcca tcatcatacc tgaaaaaact ataaaaagtt attctaatac
     6721 cataatcaac tcaagcattg cctatctttt aagccaaagg gccgaaatta aagttaaagt
     6781 ttttttaacc ggcacagaag acaatgataa aattcgttca acactcgagc aagttcaagc
     6841 tcaaggctat caatacgcta ttgctgcact aacacttaaa ggcgtgaatc aattaaaaga
     6901 ttattcagga gatatgaaaa ttttcatccc tactcttcat aaaaataatg tttctttttc
     6961 aaatttaaac aaaaatataa tctttggaag catagattat gatgctcaag tgttagcact
     7021 tttaaacaag gcaaattccg atatagcagc ctttagcgat ggatctatgc tttcgagtaa
     7081 tttaaattct cgcgtacttg aacaaaatgc aaatacaaga ttttatcgtg ttgagggaga
     7141 aaaacttgat ttttatagac tcttacgctc gcaaggcagt ttaaataatg cttcaatatt
     7201 tctcaacact cctttaatca aaacagcact tataagctct caattacgcg tatataacat
     7261 ccaacctttt gtgctcttat caactcaaat caattataat tctacatttc taagtcttac
     7321 tcaagaaggg gaccgtaaaa attttattct tgcaaattct attgataatc acgatgataa
     7381 tctatcatat ctaaacgaaa tttttaatca aagcatagat tacaactgga tagcatatgc
     7441 tacgagcata ggaacagatt atttttacac tcaattttta aataccaaaa gcgatagcct
     7501 ttttgatgaa aaaattcaaa attctcaaat tttatataaa gttcgcctca tgaaaggatc
     7561 taaagctagt tttgaagaat taaaataatt cttcaaaaag ctttttaatt cccgcatcta
     7621 tcttagcagg cttctcattt tgaatatacg caagggtaag ttcaacctta aaaagcaaaa
     7681 tctcatctct ataaatctct tgcgcaatat caactgaagc attttttatt tttaaaagct
     7741 ttgttttaac ctctataata tcaccaagtt tagctgactt tataaaaaaa caatttgctt
     7801 ttgttaataa aaaatgtccc ttattagcat caaaaatcgg tgcattttta gcaaaaaaaa
     7861 tttcacttct tgctctttca caaaatttta aataattact atgatacact actcctccag
     7921 catctgtatc ttcataatat atgcgtattt tcattttaga atccttttgt caaaaattca
     7981 atcaaaaact aatgtatcaa aaaatatgtt aaatttttct aattttaaac atatctaaat
     8041 gaaattttat ccatatttaa aaagtaatca agctttacat tattataaaa attaaaatta
     8101 aaatgcagtt ttacttttta agatatcttg aagctgccat acaaaacaat attaaagaag
     8161 ataagattct ttttgagaat cttaccctaa aagcattgga aaagtatatt aaagattttg
     8221 agtgattttt taatctttaa tgccattttc ttcaccaaat tttagtatct tagctctaag
     8281 ctcccttggg aaattatatc tataaatagc agggattctt ggatcaagga gtttgtctaa
     8341 atatcctctt ttataaatcc attccaatct ttcaggcgta aaataataag gggcattagg
     8401 atagccttga ggaggagtga gggctgcgag tttggcactt aatattaggg tatccatagt
     8461 cagtttagca gatctttcat ctctttcgtt tctaatatct acatcaaaat tagttttcat
     8521 cccatttcta tatccatcca tagcatcatc aaattcattt ctactttcag gagtagaatc
     8581 cacatctctt ggatctttta atttaccttt ttcaatatca ttatataaag cccaaatgat
     8641 tctgccttct tcatcatagg caaaatcata tttatttaaa tcaatcaccc aatctgctcc
     8701 cataatctca tctataaaag gtagcatacc aaattcatta ggctgtatag ttttagctaa
     8761 ttcttttacc aatttaaccc ttaaaggatt tttatgtatc cctgccatac ctatacctat
     8821 ttctaaaaga ttatcagcat aattataaat tcctcttttt atacctaatt cttcatatcc
     8881 tccacctgtg agttgaatat ataaaataaa acattgtatc attctggcat taaagccatg
     8941 atttttagaa cgcacaaaat attcaggttt tcctagtatt cctgctgcta taccccattc
     9001 ttgtccaaaa agagaagatt ttaaggtttc tttattattg ttaacttcat cataaatata
     9061 ggcgtattct tcattgatta aatatccttt tccatctaca ttagcataag catcataggg
     9121 tatatctata actgtacttc ttataccact tcttataatt agatatttat atctttctct
     9181 tttagttttt aaagatttat aataagcttt ttctgcttta gtccaaggag ctatgcttcc
     9241 tttgatagga tcttttaaat atatgctttg ccattctgta aattcaagta aagtagaagc
     9301 tttacctgta taaaagttag gatctagata cttgggttga tagtctttgt agggggagtt
     9361 tttcataata tgataagatt taaaaaccgc tttggaatat tcttcggtat aattgcctgt
     9421 gggtttaata ttttctttaa atagtatttt attggtatct ttttccacat ctaatgttaa
     9481 tccatcgggt gtataaatct cataagtttc gctcattatt tatccttcgt aaaatccaat
     9541 gtaaaatcca aataaactca tctattaatt tttcctatcc atcttataat attaccctta
     9601 tcatcaatct ctacttctaa atctttgtat ttgttgtaaa atttaggagc taaaatttca
     9661 ttaaagtatt ttatgccttt gggggttgtt gctacccaga tattgtattg tgaccaatat
     9721 tgtggtgtat cccaagaaac atcatttaaa ataagactat atccaccctc gtctaatgtt
     9781 tcaggatcgt ccaaatctct aataaatttg tcttgataaa agaaattatc tctaaaatat
     9841 atccaagctt ggtatttatc ttctttataa taagataagt ttgagggata gtctatttta
     9901 tttctatctt cttcatcgca ataagaacca aagtctatat atcctgctaa gaatagttgt
     9961 cctaagatgt ttatatattc acttatatag gtaggtttgg gtgtatttaa agagaaaggg
    10021 ttgctaagat tgtcaatgtt acaagtaccc aataaaatta aattattaca ttcccatctt
    10081 gatacgccca tgctttttcc acaaataaat aaaatataat actcaaataa ctctaaaata
    10141 tccatttttg ttatcaggca agaagatata attaaagagg gattattgta ggcattttct
    10201 tttaattgtg ttttcttcca taagctataa tctatatcag gaaaaaatat agcacatttt
    10261 tcttctttat tccatttgat ataattatac ttcatttttc accccatttt ctatatgtat
    10321 tgttctaaga tttcctcttg gtttattaga atttacctct atggtctcac ctccactttt
    10381 agaagctttt ttatattgta taatagtttg atcatctaat tttctcattt ttatagtacc
    10441 tccaagttta tcttgattta tatcttttaa tatgtctgcc ccatctgtaa tctcttccca
    10501 aatttctttt atttgtttat tatccttaac ccagaaaaca ttcttgcttc taccaagtcc
    10561 taattcttta gaagtcttaa gattgtattt attttttaac acctctatca cttcttgttt
    10621 agtggcatat ttggattttt tcttaataat attttttgca tttttaggat ttttcactgc
    10681 accaagcatt gctaaggcat caccgataat gctgacattt tcaagtgaat ttgaaatatc
    10741 ttccactata ccttctaatg gggtaaataa aggctttata gctccgcttg atgatttttc
    10801 ccattcttta aattcatcaa atattatctc aataaactct ccactaacca tcttgtgttt
    10861 gtattcttat aacattatca gggatgattt cttgagtatt gttatagttt tcattggtgt
    10921 gagcttgtgt ggtatttgta tcatctttta tattatcact tataagcata tctttatcat
    10981 ttgcgttaaa ataatcctta gtataaacat taaagcgaca cacattttca ttatcaagcc
    11041 actcatctaa accttttgca atttcaaaac caatcttttg cattttagca ggagctaaaa
    11101 aaactctatg atggatgatg ttttcatttt ctctataatc tttatcatat tcatgtagct
    11161 gtgtaaaata ccctactcct agatctttgt ttttaaattc tttataagca cttttataaa
    11221 ctttggcaat gtttttgggg ataacaaaga ttaattttaa caaatgcata ccaagtctaa
    11281 tctcacactc tttaaattca taatctttac taaagtcttg tttaagagta tttagtacat
    11341 taatatcatt tagattgaat aaatcatttt tagataattc taatttatct aaaccttgtt
    11401 cgttttgata tagggtatcg tttagatata aattagtgaa aagattgtct ttttgatatt
    11461 tgtgctcttt ataatacatt cttaatctag cttcttttaa ctctatttga tttttacttt
    11521 gttctcctaa gccctcctca ggatcaaagc tgtgatcaaa tttaaactta gtaggagtaa
    11581 agcttacttt taaagcaaag cctttatctg ttttacaagc tgagatgagt tcttgtaaga
    11641 ttacatattc attattgact ttcttttgag ataaggatcc ttttacatta acaactttag
    11701 tacaaggaac acttacacct gctatagtat taggacaagc tactatacta gagtttaata
    11761 aatcactttc taacattata gggataccat cacttttaaa ggattttcct ttgtttgatt
    11821 taagtatgac tttgcctcca tggatacatt ctaggttttg attttctaaa agagcgtgaa
    11881 gtttggctat gctttgtttt ttatctactt gtgtggttgt ttgttctttt agagtgtttg
    11941 aaattaaatc tttgtattct aagctttgtt tgcttaaaca ttctaatttg atatttaaag
    12001 aattttctaa tatagaataa ttaagcaaac aaagttcatc atttttataa aagatactaa
    12061 gttttcctaa accactgctt tcatctttag gagaaaaata ataactaggt gtatcttgtt
    12121 ttatagtatt atcttgatct aattctccaa agtaaaaagg attattagga agttcagcag
    12181 agcctgtaag gagggtggag tttaggaaga tataagcttg atagctttgg agttcttcaa
    12241 aagtaaaatc tgtcgttgct tctaatttat aaagttcttc ataaatgctt tgacaatcaa
    12301 tgatgctttt attttcacaa aataaatact ttttttatct ttatgaatag aatataaaaa
    12361 gtctctacct atcataattt tcctaaataa tacctatttt ggcttttcca ctaaaatata
    12421 aagcttgcga tattttacaa actccaccta aataccgctc atcccaaatt tgatctttta
    12481 gcctataaac ttttgaatta tatccatata tttttgttat attgttaata ttttcaagac
    12541 atttcatatc tttataaact gcaatgaaaa ttctaaattc cccaatggca attttatggg
    12601 ctaaattttc ttgattatta ataaaggaac aatcttttct gtatttatta aaatcatttt
    12661 tatcaagaat taaaatatat ttttcttttt cttgcacctt taaaataaaa tctataattt
    12721 ctgtttaact aataatagga actttataac ttgtataata actatctcca agctcttcta
    12781 aaataccatt ggtttcttgc attatagtgg ctattaatga aagagaatac tcaaagtggt
    12841 taatcttttc tggatggttt ttattgaacc caaaagagct atttttatta gtagcattat
    12901 tttttaacac aaaagtttct gtataaattt gaatattttt cataaaatga ttaagatact
    12961 ctatacactc actaaggctt ttatctttaa ctttgttata gttagcatct aattctaaaa
    13021 gataagaata aaaatagaga gtattaacaa gaggttttat ggagtgatcg ttttttcctg
    13081 tatatatacc taaggcatta taattaagcc tatacttcca agaaagacta aaaaccttaa
    13141 aacgcttttt gtagatttaa agatgatttt ataaataaat tttaatataa gataagaaag
    13201 aatagtagaa attataataa gaagtaatat gtatatcatg ggttatctcc ttagactctc
    13261 tattttatta aaattaagat atagtttata agttatattc agcagtataa ctttttcttt
    13321 atcattaaaa taatagagct tgttttttca tatattttta tcctttatag tttatattt
//
LOCUS       DARAII010000041        13350 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.041, whole genome shotgun sequence.
ACCESSION   DARAII010000041 DARAII010000000
VERSION     DARAII010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13350)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13350)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13350
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.041"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..168
                     /locus_tag="SB143_000963"
     CDS             <1..168
                     /locus_tag="SB143_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749510.1"
                     /translation="RFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVG
                     RKLKNYIEGWK"
     gene            complement(169..678)
                     /locus_tag="SB143_000964"
     CDS             complement(169..678)
                     /locus_tag="SB143_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEF9749511.1"
                     /translation="MKKIYILRHAKAVKDEEVQDFDRKLNKRGKEDLEKLFYNLKTHE
                     IKFDFILSSPSKRTAKTAKKIAEFYNFDKEKIQFIDELYLANLSKIYQILQTIDKKYN
                     EVLLVGHNPTLMELGEFLGSLCLTSFPTSSMLCLEFDIEDFKDLKAHSGKVIFFEHVR
                     KLKEEKELD"
     gene            complement(675..1193)
                     /locus_tag="SB143_000965"
     CDS             complement(675..1193)
                     /locus_tag="SB143_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEF9749512.1"
                     /translation="MVVILLILLNILFYFTIPYGYYNLLGLNILFFKGAYWQILSSMF
                     MHGNLTHLILNMIVLFQFGRILESYLGALRFFLLYIIGGLMCSLLSAFYVYFSFYYFG
                     GMINLVGASGAICVLMGYYAFLDKSSTKGLIVAILLMSFAPLLMGVNVAWYGHIFGFI
                     CGYFLGKLRRKI"
     gene            1293..1709
                     /locus_tag="SB143_000966"
     CDS             1293..1709
                     /locus_tag="SB143_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEF9749513.1"
                     /translation="MKIKFYGIIAILSTFLNADIIISPDELPSISKEFLKNNFQAPIG
                     IVQRDKHAYEVYLSDGTELEFESDGSWKEIESKVFPFDLNFLPPNLTNIIQNKFPNTK
                     AREIERKINYYKIKLTNNIEVHIDFNGTILYTEYDD"
     gene            complement(1764..3368)
                     /locus_tag="SB143_000967"
     CDS             complement(1764..3368)
                     /locus_tag="SB143_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEF9749514.1"
                     /translation="MKNKKIILISFLILCLLFGILYFKNEPKYIDENLYQSLLSQNLI
                     EKAVIDKDEIWLKAKGESYVIVKDGVDIKTLLSKVPVEIKKDSTLWVFFVVFVFLIAL
                     LLSFVYFARKKELAKYPISSKTQTQTSTTNLESSNIKPVISNITFNDVAGVSEVKMEL
                     SELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSGSSFV
                     EIYVGMGAKRVRELFSRAKMMAPSIIFIDEIDAVGKARGEMSNVERDSTLNQLLTQMD
                     GFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKGKNNN
                     IDLNKIAKASVGFSGAGLETLVNEAAINALRRNSSLVEESDFYAVLNKVLLGKKKNLS
                     FNDEEKGIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHAIRSKSELINRIKVYL
                     AGSRAMSLIYNESYTNSQNDFLKVKELLDYMISFGMLEEPNLNEIKRELDEFLFPLKE
                     KISTLAKILLEKEKIEYNDVKEVVQV"
     gene            complement(3365..4621)
                     /gene="mtaB"
                     /locus_tag="SB143_000968"
     CDS             complement(3365..4621)
                     /gene="mtaB"
                     /locus_tag="SB143_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEF9749515.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIVNDEEKAQIIVVN
                     SCTVTNGADSGIKSYINSMQKKGVRVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGLKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEQALLRQVEILGANGYSEVVLTGTNIGSYGLKNGTTLGKLLQKMGQISGIKRIRL
                     GSLEPAQIDESFLEILDERWMERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVGHPGETEELWHEALKHFQEFPLTHIHAFIFSPRNNTHSATMKDTING
                     AVAKERLNTLKVIIENNNYEFRKRVKTPLEILVENQKDGFFEGYDQFFNKIKIKSSKD
                     IAKEWLKLERYEVQEKHNFADLEGKK"
     gene            complement(4618..6189)
                     /locus_tag="SB143_000969"
     CDS             complement(4618..6189)
                     /locus_tag="SB143_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEF9749516.1"
                     /translation="MRKILLLLCFSLFAFGDINRTIINNINEKISNLDTVIGASIWDV
                     RYENFIKYQDINDELIILNLELKKIEDVHLQDELKRKIATLEEQLNVLKEYKELNFAH
                     SLSAPEDIETLSKLTNPFAIIGAFSHIKKLRGEKEEYAFKFNDFKNLVEKIREKNLEL
                     KELVNLESNIENIEALKASDKKLEEFDQALKFASVSYSVYEKKIDDEIARVSAEIKAQ
                     GLRAINIVIAIVIVVAIAFMLKLVAKKYIKDNERYYTATKIINFINLNIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIVFGGSFRVGDRVKVFQNDTTYVG
                     DIIDISFLRITLYEDITLETYSKNRRAGRIVFIPNNYVFTNLISNYTHHGMKTILDGI
                     DISVTFDSNIEKAQAIVEEVVNRLAKGYTELAKKTMKRLQNEYSIRNPKVEPRFFVFF
                     EHWGMRISAWYMTNSYAALILRSAISKEIIKEFNKHEDIKIAYPSQNLYLGNLNQAPF
                     ETHYNSMHFHTKDNN"
     gene            complement(6186..7241)
                     /locus_tag="SB143_000970"
     CDS             complement(6186..7241)
                     /locus_tag="SB143_000970"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEF9749517.1"
                     /translation="MQINVDLKENAYKVYIDELDNLELDTKVFILSNPKISGLHLKTL
                     LSKIKAKELFIATIEDGEEYKNLLTLEKILNQMFNSKLNRKSILISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNAFGKNLIGTFYQPKAVYCESEFLR
                     TLGRRELAAGMAEFIKMAAMFDRDLLEFIEAIDKESFLNATCENEIFTQIISKSVELK
                     ARVVECDEKESGLRMLLNYGHTFAHVIENFTDYKQYLHGEAVAIGMNMANRLALKLGL
                     LSKEECERIEKILLQFNLPTHYKIENINEFYEAFFMDKKSANQKLNFILANSLGKGLI
                     KGDIAKEMILETLEEFQ"
     gene            complement(7409..8809)
                     /locus_tag="SB143_000971"
     CDS             complement(7409..8809)
                     /locus_tag="SB143_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter TrkA"
                     /protein_id="HEF9749518.1"
                     /translation="MNHILIIIDGILAKHFLERLCFEKGLGYFFTIVCQNEENINLGA
                     NSEYIEFHHFDPTSTARLETLMNKSFKQAFIYMQDEFETKKTYEALRSLDANLEIEIM
                     DFWGLNINDVHTNLADARMTLSRRFMDFLPDIALTAYCVGLGVGEVMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLQPNDSILIVGDPAVLQSIFHNIRGKA
                     GQFPLPFGSNIFTLIDMKKMSEDTQERLLDTTLQLVKKSNAKKFFIRVLNPKLGALYD
                     KMKQLSDEQESIFFDFFNTDFANLNSFLENNDIGIILTDFKHFEQEKKTFFELKIPIL
                     KIGEGKFENIQNAVILSTNETELENNANVITDLSKQLDFDITLYYYNPNLQNTTDMEE
                     YFGSLSKLYDKNIQIISKNDENPILSLSYRADLLQFVSFEKELLEGEFSKSLSTNLNR
                     HYSKMRQNYQLFIPVE"
     gene            8839..9972
                     /gene="tgt"
                     /locus_tag="SB143_000972"
     CDS             8839..9972
                     /gene="tgt"
                     /locus_tag="SB143_000972"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEF9749519.1"
                     /translation="MEFKLKHKDNLARVCEITTAHSTFETPIFMPVGTVGAVKSLDAI
                     DLKEQLNAKIILANTYHMYLRPGSKIVKHFGGLHGFTKFDRSFLTDSGGFQAFSLSAN
                     SKHFQEGIEFKSHIDGSKHLFTPKSVLDTQYDLNSDIMMILDDLIALPATKERIKVSV
                     DRTIKWAKEAIDYHKQMQIQGLGLKQNIFGIIQGGTDYEERKRCALALNEMDFDGLAI
                     GGLSVGEENALMYETVENLNPFLDENRPRYLMGVGTPEDLVENIERGVDMFDCVMPTR
                     NARNGTFFTNFGKFNIKRAEFINDHESIDNECSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLTLVAQAREAIKKSEFKKFKYEFYAKRLTNGMR"
     gene            9959..10729
                     /locus_tag="SB143_000973"
     CDS             9959..10729
                     /locus_tag="SB143_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEF9749520.1"
                     /translation="MVCDENLSKFLANKNLNTLYMDFLGQKILILNSYSSKTKKANFS
                     VFGFEDDTIFKLENAQFKPFSLNDFLSTIRAILEDCKNENAYFERILERKENILLKGN
                     LIKNFFKKSFILKQKINKNLKNLSLLDEALNLLAGTSPHKKALKPIIFAVGVTLKNNK
                     EIITRLNELHLLMSAIKNEKMNQSLYFLSILSAIFLPLNLIVGFFGMNTNDLFLSNVK
                     HATWYVFALICFILLSGLIVYRKKRKKELEFEDKILNK"
     gene            10784..10860
                     /locus_tag="SB143_000974"
     tRNA            10784..10860
                     /locus_tag="SB143_000974"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:10818..10820,aa:Arg,seq:gcg)
     gene            complement(11366..>13350)
                     /locus_tag="SB143_000975"
     CDS             complement(11366..>13350)
                     /locus_tag="SB143_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
                     /protein_id="HEF9749521.1"
                     /translation="ALLIAYGKDHVIEHNGELKATGKEGIAINIDFGDNTLGNAEEYR
                     GSYIHQMSGNNQDDLAEYNLDGALVKSLNLNAASSTIGSLASIYIADNAYVNTINIAQ
                     WAKVEGDIISNWDPNNEKLANQYKDSFYTDLNFGSDSSLSRAAFNALDNTWSVKANVL
                     GYDNFKMNVNENLNLQGSAFVYDLNNKAHFSLLGADGINPSLLYIKNNFTQDSNAILT
                     AGINANGQSLVYVGGNANLAGAFNFYMLKDFYKDKVVLDPDLISANQIQGAFNSIVYD
                     NSLDFSPTLNFIYDANTKELGVVRDYTPYIKNSSDISLAYALNSLAQNGKYEDIALLF
                     KELDFATDAQIIAQGLNELNAKAYLDSAKISLDFQEELNKEALSDVRKGYANEWQSFV
                     TPFGTYQSSRANGDFDAYKGYGGGVKAKAIKGFDSFNLGFNLVLNTNNIDIDDTLANT
                     KTTGAYAGIFSKYDLEDFYLLGSFRMGYEHTKLNRNVNIGAFSANYNSKFNSYLISEM
                     VGIGKSFNHYGVSYGPLAYIEHSFLHHFAINEENQNSTALNIDSKNFHALNSFMGFNV
                     NYEKGMSDKAIVNFYFLGGWNHYFLDSLKNNASFKDASLNKFYTKSKLSNQDSLYLQG
                     EIDFTHNQSFFTRLMLSSDIKDNIDFSTKLEVGAKF"
BASE COUNT         4681 a         2298 c         1714 g         4657 t
ORIGIN      
        1 cgttttggtc taatggacga tgaaagcgat agaactttag aagaaatagg taaagaatta
       61 aatgttacac gcgaaagagt aagacaaata gaaagctctg caattaaaaa actcaaacat
      121 ccaaaagtgg gtagaaaact caaaaactat atcgagggtt ggaagtaatt aatccaactc
      181 cttttcctct tttaattttc tcacatgttc aaaaaatatc acttttccgc tatgcgcttt
      241 taaatcctta aagtcttcta tgtcaaattc taagcaaagc atagatgaag taggaaaaga
      301 agtcaaacat aaagagccta aaaattctcc aagttccatt aaagtaggat tatgccctac
      361 taataaaact tcattatatt ttttatcgat agtttgtaaa atttgatata ttttagacaa
      421 attagcaaga taaagctcat ctataaattg aattttttcc ttgtcaaaat tataaaattc
      481 ggctattttt ttagctgtct tagcagtgcg tttagatgga cttgaaagta taaaatcaaa
      541 ttttatctca tgggttttta aattataaaa aagcttttct aagtcttctt tacctctttt
      601 atttaacttc ctatcaaaat cttgcacttc ctcatcctta acagcctttg catgtcttaa
      661 tatatatatt tttttcaaat ttttctcctt aacttcccta aaaaatatcc acaaataaaa
      721 ccaaaaatat gcccatacca tgcgacattt acacccataa gcaatggagc aaaactcatt
      781 agtaaaatag cgactataag accctttgta ctacttttat caagaaaagc ataatacccc
      841 atcaaaacac aaattgctcc acttgctcct acaagattta tcatcccacc aaaataataa
      901 aaagaaaaat atacataaaa agcactcaaa agcgaacaca tcaatccgcc aattatatac
      961 aataaaaaga aacgcaaagc acctaaataa gactctaaaa tacgaccaaa ttgaaataaa
     1021 actatcatat taaggatgag atgagttaaa tttccatgca taaacattga acttaaaatt
     1081 tgccaataag ctcctttgaa aaacaaaata tttaacccaa gcaaattata atacccataa
     1141 ggaattgtaa aatagaataa gatatttaag agaatcagta aaattacaac caaaaacaac
     1201 ctttaaaata tttatgttat tgtcttgaaa ttcacataaa attcacataa attcactaaa
     1261 atttagtgca aaataataaa taggaaaaac ttttgaaaat aaaattttac ggcattatag
     1321 ctatcttatc cactttttta aacgctgata ttataatatc tcccgatgag cttccaagta
     1381 tttctaaaga atttttaaaa aataattttc aagctcccat aggtatagta caaagagata
     1441 agcacgctta tgaggtttat ttgagcgatg ggacagaatt agaatttgaa agcgatggtt
     1501 catggaaaga gatagaaagt aaggtctttc cttttgattt aaatttttta cctccaaatt
     1561 taacaaatat cattcaaaac aaatttccca acacaaaagc tagagaaatc gaaagaaaaa
     1621 tcaattatta caaaatcaag cttactaaca atatagaagt acatattgat tttaatggta
     1681 cgattttata tacagaatat gacgactaaa acaatttatt aaagtctaag atagatgaca
     1741 aaatctaaag ccatatagat actttaaacc tgaactactt ctttaacatc gttatactct
     1801 atcttttctt tttcaagtaa aattttagca agcgttgaaa ttttttcttt taaagggaat
     1861 aaaaactcat ctagctccct tttaatttcg tttaaatttg gttcttcaag cataccaaag
     1921 cttatcatat aatcaagcaa ttctttaact tttaaaaaat cattctgtga gtttgtatag
     1981 ctttcattat aaatcaaact catagctcta gagcctgcta aataaacctt aatgcgattg
     2041 ataagttctg attttgagcg aatggcatgc tcgtattcct taaaacgatc ttcaataaga
     2101 gtaattttct caaatcctat atcaaaataa tacgcactca aagcttttgc ggcctgataa
     2161 gtcgcttgta tacccttttc ttcatcatta aaacttagat tttttttctt tcctaaaagc
     2221 accttattta gtacagcata aaaatcgctt tcttccacca aagaactatt tcttcttaaa
     2281 gcattgatag ccgcttcatt aactaaggtt tcaagtccag caccgctaaa acctacactt
     2341 gcttttgcaa ttttatttaa atcaatattg ttatttttac ccttcatgta aatttctaaa
     2401 attttaagcc tatctttaaa atctggcaaa gataagaaaa tgcgtctatc aaaacgccct
     2461 gaacgaagta aagcaggatc cattagctcg attttattag tcgcggcgat tacgataaca
     2521 ccactattat cttcaaaacc atccatttgg gttaagagtt gatttaaggt gctatctctt
     2581 tcgacattag acatttcacc ccttgcttta cccaccgcat caatttcatc aataaaaata
     2641 atacttggag ccatcatttt agctctagaa aaaagctccc ttactctttt agctcccatt
     2701 cctacataaa tttcaacaaa acttgatccg ctttgataaa aaaaaggtac ccctgcttcg
     2761 cctgcaaccg ccttagcaat caaagttttc cctacccctg gaggacctac cattaaaaca
     2821 ccctttggca tttttacacc aaattctttg tattttttag gattttgcaa aaaatccaca
     2881 agttcactaa gctccatttt tacttcactc acgcctgcta catcattaaa ggtgatatta
     2941 gaaatcacag gttttatatt ggaactttct aaatttgtgg tagaagtttg ggtttgagtt
     3001 ttactagata taggatactt agctaattct ttttttcgtg caaaataaac aaaacttaat
     3061 aaaagcgcga taagaaatac aaatacaaca aaaaataccc acaaagtact gtcttttttg
     3121 atttccacag gaacttttga taaaagggtt ttaatatcta caccatcttt tacgatcaca
     3181 tagctctcac ccttagcttt aagccaaatt tcatccttat caatcactgc tttttcgatt
     3241 aaattttgac ttaataaact ttggtaaaga ttttcatcta tgtatttagg ttcattttta
     3301 aaatacaaaa ttccaaaaag caaacacagg ataagaaaag atatcaatat aatttttttg
     3361 tttttcattt tttaccctct aagtctgcga aattatgctt ttcttgcact tcatatcgct
     3421 ctaattttag ccattctttt gctatatctt tactgctttt gatttttatt ttattaaaaa
     3481 actgatcata accttcaaaa aaaccatctt tttgattttc aactaaaatt tcaagtggag
     3541 ttttaactct ttttctaaat tcatagttat tattttctat aataactttt aaagtattta
     3601 atctttcttt agccacagca ccatttatag tatctttcat ggtggctgaa tgcgtgttgt
     3661 ttctagggct aaaaataaaa gcatggatat gagtaagtgg aaattcttga aaatgcttta
     3721 aagcctcatg ccaaagctcc tcggtttccc ctggatgccc tacgataaaa tcagtcccca
     3781 aagcatatcc tttactggct atggtattaa aaagcttcaa gtcattatct gtatgcgatc
     3841 ttcttctcat gatgcgaagc attttttcac ttgtatgttg caaagcgata tgtaaatgtc
     3901 gctccatcca tctttcatct aaaatttcta aaaaactttc atcaatttga gcaggctcta
     3961 aactaccaag tcttatgcgt tttatacctg aaatttgacc cattttttgc aaaagcttac
     4021 ctagtgttgt tccattttta agtccgtaag aacctatgtt tgtacctgtt aaaaccactt
     4081 cgctatagcc atttgctcct aaaatttcaa cctgccttaa caaagcctgc tcatcaacac
     4141 ttcttgattt cccacgcacg ctagggataa tgcaataaga acaagcaaaa tcgcaacctt
     4201 cttgaatttt aacaaaggct ttggtgtgat tttcgtactc acaaactata tctttatcaa
     4261 taaaatttaa atttccaagc tcgtaaaaac ttgtttttaa acccaaaaat tcattgattt
     4321 tatctttatt tgatgctcca agcaccccaa aaacttgttt tttatccaaa agttctttgc
     4381 ctttactcac tgcaccgcaa cccgtaagta taactctaac accctttttt tgcatggaat
     4441 taatataaga ctttattccg ctgtctgcac cattggtaac agtgcaagaa ttaactacga
     4501 taatctgtgc tttttcttca tcatttacga tttcataatc ttttacatag cttttcaaaa
     4561 gctctgtatc gtatatattg gtgcgacatc caaaggtttt aaaaaaaact ttttctttca
     4621 attgttatcc tttgtatgaa aatgcataga attataatga gtctcaaaag gagcttgatt
     4681 taaatttcct aaatataaat tttgagatgg ataagctatt ttaatatcct catgcttgtt
     4741 aaattcttta ataatctctt tactgatagc gcttcgaagt atcaatgctg cgtatgaatt
     4801 tgtcatatac caagcagata ttctcatccc ccaatgttca aaaaagacaa aaaatctagg
     4861 ctctactttg ggatttctta tgctgtattc attttgcagt cttttcattg tttttttggc
     4921 tagttctgta tagccctttg ctaggcggtt gacaacttct tcaactatag cttgagcttt
     4981 ttctatgtta gaatcaaaag taacgctaat atctatacca tctaaaatcg ttttcattcc
     5041 atgatgagta taattagaaa taagatttgt aaaaacataa ttattgggta tgaaaacaat
     5101 acgccctgct ctacgatttt tactataagt ttcaagtgta atatcttcat ataaagtgat
     5161 acgcaaaaaa gaaatatcta taatatcccc cacataagta gtatcatttt gaaaaacttt
     5221 tacacgatcc cctactctaa agcttccacc aaaaacgatc acacaccatc caagcataga
     5281 cataaacata tctttcatag caatagctaa gcctgctgat gcaaaaccaa gtatagtaac
     5341 aagataggtt atattttcta tataagcaaa aagcaaaata agaaaaatga tattaaggtt
     5401 aataaaattg ataatctttg ttgctgtgta gtatctttca ttatccttta tgtatttttt
     5461 agcaacaagt tttaacataa aagcaatagc tacaacaata acaatagcta tgactatatt
     5521 aatcgctctt aaaccctgcg ctttgatttc agcacttact cttgcaattt catcatcaat
     5581 ctttttttca taaacagaat aagaaacact agcaaatttt aaggcttgat caaattcttc
     5641 aagtttttta tctgatgctt ttaatgcttc tatattttcg atatttgatt ctagattgac
     5701 taattctttg agttctaaat tcttttctct gattttttct accaaattct taaaatcatt
     5761 aaatttaaag gcatattctt ctttttctcc tcttaatttt ttaatatgag aaaaagcccc
     5821 aataatcgca aaaggattgg tgagcttaga taaagtttct atatcttcag gtgcactaag
     5881 actatgggca aagtttaatt ctttatactc tttaaggaca ttaagctgtt cttctaaagt
     5941 tgctattttt cgttttaatt catcttgtaa atgcacatct tctatttttt ttaattctaa
     6001 atttaagata ataagttcat catttatatc ttgatatttg ataaaatttt catagcgtac
     6061 atcccaaata ctagctccaa tgacagtgtc taaattgctt attttttcat tgatattatt
     6121 aataatagtg cgatttatat cgccaaaagc aaaaagacta aagcaaagta aaagaaggat
     6181 ttttctcatt gaaattcttc caaggtttcc aatatcattt ctttggcaat atcacctttt
     6241 atgagtccct tgcccaaaga atttgcaaga atgaaattta atttttgatt agcacttttt
     6301 ttatccatga aaaaagcctc ataaaactcg ttgatgtttt caattttata atgcgttggc
     6361 aaattaaatt gaagtaaaat tttttctatt ctctcgcatt cttctttact taataatcct
     6421 aattttaaag ccaagcgatt tgccatattc atccctatag ccactgcttc accatgtaaa
     6481 tattgtttat aatctgtaaa attttctatc acatgagcaa aggtatgacc ataatttaaa
     6541 agcattctta agcctgattc cttctcatca cactccacaa ctcttgcctt aagctctacg
     6601 cttttagaaa taatttgagt aaaaatttcg ttttcgcaag tcgcatttaa aaaactttcc
     6661 ttatcaatcg cttctataaa ttcaagcaaa tccctatcaa acattgctgc cattttgata
     6721 aattcagcca tccctgcggc caattctctt ctacctaagg ttcttaaaaa ttcactttcg
     6781 caatacacag ctttaggctg ataaaaagtg cctattaaat tttttccaaa agcattatta
     6841 actcctgttt tgccacctac tgcagcatcc acacaagcta aaagcgtagt agggatattg
     6901 ataaaatcaa tccccctttg ataaatactt gccgcaaatc cacccatatc gctaattact
     6961 ccacctccaa agcttatcaa tatacttttt cggttaagtt tggaattaaa catttgattt
     7021 aaaatttttt ccaaagtgag taaatttttg tattcttcac catcttctat cgtcgctata
     7081 aaaagctctt tagccttaat tttagacaat agtgttttta aatggagtcc tgaaatttta
     7141 ggatttgaaa gtataaaaac cttagtatct aattctaaat tatccaactc gtctatataa
     7201 accttgtaag cgttttcttt taaatctaca tttatttgca ttgttctact tttattttga
     7261 aattaaatct attctagcaa attagggcta atcattttct tagttctaag ccataaagct
     7321 aagaaaattt aaaataaaaa tcttttttga aacactaaaa aacaagctcc taaaaaaata
     7381 atactttatc ataagcctta aatgattctc attctacagg tatgaaaagt tgataatttt
     7441 gcctcatttt agaataatgt ctattgagat tagtgcttaa acttttgcta aattctccct
     7501 ccaaaagctc tttttcaaaa ctcacaaatt gcaacaaatc tgcacggtaa gataaagata
     7561 aaataggatt ttcatcattt ttgcttataa tttggatatt cttatcgtaa agcttagata
     7621 aacttccaaa atactcctcc atatctgtag tattttgcaa attaggatta taataataca
     7681 aagtaatatc aaaatcaagt tgcttactaa gatctgtgat cacatttgca ttattttcaa
     7741 gttcggtttc attagtactt aaaataacag cattttgaat attttcgaat ttaccctcac
     7801 ctattttcaa aataggaatt ttcaattcaa aaaaagtttt tttctcttgc tcaaaatgtt
     7861 taaaatctgt aagaataata cctatatcat tattttccaa gaaagaattt aaatttgcaa
     7921 aatctgtatt aaaaaaatca aaaaatatac tttcttgctc atctgaaagt tgcttcattt
     7981 tatcatataa agcacccaat ttaggattaa gcacccttat aaaaaatttc ttagcattgc
     8041 tttttttaac caattgcaaa gtggtatcta gtaatctttc ttgtgtatct tcactcattt
     8101 ttttcatatc aataagagtg aagatattgc tcccaaaagg aagtggaaat tgtcctgctt
     8161 tacctctgat attgtgaaaa atactttgaa gaacagcggg atcgcctacg attaaaatgc
     8221 tgtcgttagg ctgtaaaaca aaagatggct taacaaaata aattttagaa tttctataaa
     8281 tgagtactat acgccatctt ttttgctgta tggagctaat atgcctgtat gcaaaaatcg
     8341 accctgcagg aattttaact tccataacct ccccaacacc caatccaaca caataagccg
     8401 ttaaagcaat atcaggcaaa aaatccataa atcttcggct caaagtcatt ctagcatcgg
     8461 ctaaatttgt atgaacatca ttaatattca aaccccaaaa atccatgatc tcaatctcta
     8521 aatttgcatc taaagaacgc aaagcttcgt aggttttttt agtttcaaat tcatcttgca
     8581 tatagataaa agcttgtttg aaagatttat tcataagagt ttcaaggcgg gctgtgctag
     8641 tgggatcaaa atgatgaaat tcaatatatt cgctatttgc acctaaattt atattttctt
     8701 cattttggca aactatggta aaaaaatatc ccaagccttt ttcaaaacaa agcctttcta
     8761 agaaatgctt tgctaaaata ccatcaatta ttattaaaat atgattcatt ttgcactcca
     8821 aaaaggaaat tataacaaat ggaatttaaa ttaaagcata aagacaatct agctagagta
     8881 tgtgagataa caacagctca tagcactttt gaaactccta tttttatgcc agtaggcaca
     8941 gtaggtgctg taaaaagcct tgatgcaatt gatcttaaag aacaacttaa tgcaaaaatc
     9001 atcctagcaa acacttatca tatgtattta aggcctggtt ctaaaatcgt aaaacatttt
     9061 ggtggtttgc acggctttac aaaatttgat agaagttttc ttactgatag tggtggcttt
     9121 caagcttttt cactttctgc taattctaaa cattttcaag agggtataga atttaaaagc
     9181 catatagatg gttctaagca tttatttact cctaaaagcg tattagatac tcaatatgat
     9241 ttaaatagtg atatcatgat gatactagat gatcttatcg cccttcctgc tacaaaagaa
     9301 cgcattaaag tttcagtaga tagaactata aaatgggcaa aagaagcgat tgattatcac
     9361 aaacaaatgc aaattcaagg actaggtcta aaacaaaata tttttggaat catacaaggg
     9421 ggaactgatt atgaagaacg caaacgctgt gctttagccc ttaatgaaat ggattttgat
     9481 ggacttgcta taggaggact tagcgtaggt gaagaaaatg ctcttatgta tgaaactgtg
     9541 gaaaatttaa accctttttt agatgaaaat cgcccccgct accttatggg ggttggaact
     9601 cctgaggatt tggttgaaaa catagagcga ggggtggata tgtttgattg tgttatgcct
     9661 actagaaatg ctagaaatgg aacttttttc accaattttg gcaaatttaa tatcaaaaga
     9721 gctgaattta tcaacgatca tgaaagcatt gataatgaat gctcatgcta tacctgtcgt
     9781 aatttctcac gcggatattt aaaccatctt tttaaagcta aagaattaac cttttttcgc
     9841 ttggctagtt tgcataattt acattattat ttaaccttag tagcgcaagc acgagaggcg
     9901 ataaaaaagt ctgaatttaa aaaattcaaa tacgaatttt acgccaaaag gctaaccaat
     9961 ggtatgcgat gagaatttaa gcaaatttct tgcaaataaa aatttaaata ctttatatat
    10021 ggatttttta gggcaaaaaa ttttgatttt aaattcttac agctcaaaaa caaaaaaggc
    10081 gaatttcagt gtttttggat ttgaggatga tacaattttc aaacttgaaa atgctcaatt
    10141 taaacctttt tctttaaatg attttttaag caccattcgg gctattttag aggattgtaa
    10201 aaatgaaaat gcttactttg aacgcatttt agaacgcaaa gaaaatatac ttttaaaagg
    10261 caatttgatc aaaaatttct ttaaaaaaag ttttatccta aaacaaaaaa tcaataaaaa
    10321 tttaaaaaac ctttccttgc ttgatgaggc attgaattta ttagcaggga caagcccgca
    10381 taaaaaagct ttaaagccta ttatctttgc tgtcggggtt acattaaaaa acaacaaaga
    10441 aattatcact agattaaacg agcttcattt attaatgagt gcaattaaaa atgaaaaaat
    10501 gaatcaaagc ttatattttt taagcatatt atctgcaata tttttacctc ttaatctgat
    10561 agtaggtttt tttggtatga atactaatga tttgttttta agcaatgtta aacatgcaac
    10621 ttggtatgtt tttgctctta tatgttttat tttattaagt ggcttaatcg tttatcgcaa
    10681 aaaaagaaag aaagaattag aatttgaaga taaaatctta aacaaataac ctaattttaa
    10741 gaaaattttt tatacaatta catctttaaa aatacaaaaa gatgcgctca tagctcagct
    10801 ggatagagca tttgattgcg gttcaaaagg tcagaggttc gaatcctctt gagcgcacca
    10861 ttacttctta tatcaattta tctcacttaa caaataaaag ccaataaatc aaaactttgt
    10921 aagaatggta attaatatct tttgatcaat tcaaaaatat gtgcaaaaaa tttcttctaa
    10981 gaatttacat atattttata tgcttataaa aagatgaaag attatcaacg ataaacaatt
    11041 aaaaattaag ctgtatttaa aaaattttca ttctctttta tacttttcta catcactttg
    11101 caagtctaaa taaatgattt tatcttttct tgtattataa atataatctt taagtagctt
    11161 ttattgcttt tattgcttta aaatccttac ttttatatat agcaatttgc aaaaactaaa
    11221 actctttaaa cattagcaaa gattacttga aaatttaaaa aggataaata taaaacaaag
    11281 atcaacaaaa aacaatttaa gtttaaaagt ataaaataaa gcctaataat atcataatca
    11341 caaggcttta tttttttgtg ttttactaaa acttagctcc tacttcaagt ttggtgctaa
    11401 agtctatatt atctttaata tcacttgaaa gcattaatct tgtaaagaaa gattgattat
    11461 gagtaaaatc aatttctcct tgtagatata aagaatcttg attgcttagt ttgcttttgg
    11521 tatagaattt atttaaactt gcatctttaa agctggcatt gttttttaaa gagtctaaga
    11581 aataatgatt ccatccaccc aagaaataaa aattcacaat agctttgtca ctcatacctt
    11641 tttcataatt tacattaaat cccataaaag aatttaaagc atggaaattt ttagaatcaa
    11701 tatttaaagc tgtagagttc tgattttctt cattgatagc gaagtgatgt aagaagctgt
    11761 gttctatata agctaaaggt ccatagctta ccccatagtg attaaagctt ttacctatac
    11821 ctaccatttc actaataaga taagaattaa acttagaatt ataatttgca ctaaaagctc
    11881 ctatgtttac atttctatta agcttggtgt gctcataacc cattctaaaa cttcctaaaa
    11941 gataaaaatc ttctaaatca tatttagaaa aaatgcctgc atatgcccct gtggtttttg
    12001 tattagctaa ggtatcatct atatctatat tattagtatt taacaccaaa ttaaatccta
    12061 aattgaaact atcaaatccc ttaatagctt tagcctttac tccacctcca tagcctttat
    12121 aagcatcaaa atctccatta gctcttgagc tttgataagt tccaaatggg gttacgaagc
    12181 tttgccattc attggcatat ccttttctta catcgcttag ggcttcttta ttgagctcct
    12241 cttggaaatc taaagaaatt ttagcactgt ctaaataagc tttagcatta agctcgttta
    12301 aaccctgagc tatgatttgt gcatctgtag caaagtccaa ttctttaaaa agcaaagcaa
    12361 tatcttcata ttttccattc tgagctaaag aatttaaagc ataagctaaa gaaatatcgc
    12421 ttgaattttt aatataagga gtataatcac gaacaactcc taattctttt gtatttgcat
    12481 catagataaa atttaaagta ggagaaaaat caagactatt atcataaaca atagaattaa
    12541 aagcaccttg aatttgattt gcgctaatta aatcaggatc taacactact ttatctttat
    12601 aaaagtcttt taacatgtaa aaattaaaag ctcctgctaa attagcatta cctcctacat
    12661 atactagact ttgtccatta gcattaatac ctgcagttag gatagcattt gaatcctgag
    12721 tgaaattgtt tttaatatat aataaagaag ggttgatgcc atctgcaccg agtaggctaa
    12781 aatgggcttt attgtttaaa tcataaacaa aagcactacc ttgtagatta agattctcat
    12841 taacattcat tttaaaatta tcataaccta atacattagc tttaacactc caagtattat
    12901 ctaaagcatt gaaagcagct cttgataagc tagagtcaga accaaaatta agatctgtat
    12961 aaaagctatc tttgtattga tttgctaatt tttcattatt aggatcccaa ttagaaataa
    13021 tatctccttc taccttagcc cattgtgcta tgttgatagt gtttacataa gcattatcag
    13081 ctatataaat ggaagctaaa gaacctatag tagagctagc agcattaaga tttaagcttt
    13141 taaccaaggc tccatctagg ttatactccg caagatcgtc ttgattatta ccagacattt
    13201 gatgtatata agagccacgg tattcttcag cattgcctag agtgttatcc ccaaaatcta
    13261 tattgatggc tataccctct ttacctgtag cttttaattc tccattatgt tcaataacat
    13321 gatcttttcc ataagcgatt aataaagcat
//
LOCUS       DARAII010000042        13331 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.042, whole genome shotgun sequence.
ACCESSION   DARAII010000042 DARAII010000000
VERSION     DARAII010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13331
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.042"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..611)
                     /gene="ccoO"
                     /locus_tag="SB143_000976"
     CDS             complement(<1..611)
                     /gene="ccoO"
                     /locus_tag="SB143_000976"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEF9749522.1"
                     /translation="MFSWLEKNPFFFAVAVFIVIAYAGIIEVLPNFAENARPIEGKKP
                     YTVLQLAGRQIYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLMRVGNYRTTDWHENHMWDPVSVVPNSIMPAYKHMFKNNADMETAYAEALTVKKVF
                     NVPYDTENGTKLGTWEEAQAEIKAEAQAIVDQMKNQEVKDAFA"
     gene            complement(624..2090)
                     /gene="ccoN"
                     /locus_tag="SB143_000977"
     CDS             complement(624..2090)
                     /gene="ccoN"
                     /locus_tag="SB143_000977"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEF9749523.1"
                     /translation="MHPGNALNYDYTVAKYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESKFLMAIGKL
                     HFWLYMITMIVAVISLFAGVSTSKEYAELEWPLDILVVLIWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMAVPTYFVAEMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSIVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRIFRRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIIPYYWIRAI
                     GGLLYLIGFFMFTYNIYKSIACGKVLDKEPKSASPMAA"
     gene            complement(2219..2887)
                     /locus_tag="SB143_000978"
     CDS             complement(2219..2887)
                     /locus_tag="SB143_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEF9749524.1"
                     /translation="MKELVILVVEDEVKIRESLVNVLSSRYSKVIGAQNGDEGLKKFK
                     KFKPDLIITDIAMPIMDGLDMAKEIKEIANDVPIVVLSAYSEKERLLRSIDIGIDKYL
                     IKPVDVDELFKVLDYLVGEKIETNALVDISKEYQFNKTKRILIHKGQEIVLTKKELAF
                     ISLLLKQPGVLVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEKFIKNVPGLGYKI
                     NIEN"
     gene            complement(2891..4105)
                     /locus_tag="SB143_000979"
     CDS             complement(2891..4105)
                     /locus_tag="SB143_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEF9749525.1"
                     /translation="MANSVAEQVLKVIEKKTIFFKINLQGIIIDASEKFCKISGYSKK
                     ELIGKHHFILKHPDVKESYINQLLGKLWQKEAYWVVFKNVDKLGKTFYLDAFLIPIVD
                     NKGDLNEIIALSYDISNSFKLNEELVLNHAKLREISVNLEKTAKERKEEFAKLSKDFE
                     YKLKVALEKNEKDTKKIYKEILNSSIEQMISDIAHQWRQPLNELGIAMFQMKQNVQDE
                     KGFTEIYLQSKSTIKNMSETIDIFRTLFKNNENEKNHVSLREILNKVIGIAFETIEKH
                     QVNTRIISKTDYRVIAHENGLMRVFLNLIINSIEAFKTQKVKNIIFSFSKFGKNYIKV
                     KVKDNAGGVDEDILDKIFQPYITTKHPSQGIGAGLYISKQIVESFGGKIQVKNIKDGA
                     CFEIYLKLQEGN"
     gene            complement(4106..4777)
                     /locus_tag="SB143_000980"
     CDS             complement(4106..4777)
                     /locus_tag="SB143_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEF9749526.1"
                     /translation="MNFLPLNFDFLAIFSVAFLSSFGHCYSMCGGFILAFMNLNSTHK
                     NLFLLTFIYQLFRIFSYILLGIIFGIFGNLLAINAKIQSLSFFILGVFMVILGFSLIF
                     RGKILAFIENRAFFEYFIKKIIKKSMGFKGVKSAMILGFANGFVPCGLVYFFLANAMS
                     RQNVTESILVMLVFGLSTLPAMLFFFKISQYLGVFLKKVFNYLSYFIIVAYGIGLAYM
                     GFKAF"
     gene            complement(4774..5892)
                     /gene="carA"
                     /locus_tag="SB143_000981"
     CDS             complement(4774..5892)
                     /gene="carA"
                     /locus_tag="SB143_000981"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEF9749527.1"
                     /translation="MKAYIYIENDIFLTAKAFGKGGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIIFSMPEIGIVGTNENDNESKEIFASGVLMRELSPTFSNFRAQKSLQEYLEE
                     HGKIGVYGLDTRYLVKMLRDSGNLRAVISTEISSKEELKAALEKSAKIDEINFVKEVS
                     TKKSYAHKHGVWNNATQSYNKAKKNTKKVAVIDYGVKANILNELVEVGLEVEVFPYNT
                     KAEELIKLYQKGQIQGVFLSNGPGEPKILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLENKSVEITAQNHNYNVPEELCEVAIITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(5896..6447)
                     /locus_tag="SB143_000982"
     CDS             complement(5896..6447)
                     /locus_tag="SB143_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEF9749528.1"
                     /translation="MRIKLPHIPYITNKIMLDIAHSSFVEIKDNIEKLNPCIKQILED
                     DLMNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFGVILNSEDRHNHL
                     AHRILEELIENDYINFVVSENRVKNLIFSSIDDYLKIYEKLEDEVYEKINNYKTKPIP
                     GSEEYELIFEKLYQEELRKKGMF"
     gene            complement(6521..7039)
                     /locus_tag="SB143_000983"
     CDS             complement(6521..7039)
                     /locus_tag="SB143_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEF9749529.1"
                     /translation="MYKRLLFLAFFINLAWGAEQDCEQYFEARKAQLELQTREFDEAR
                     QALEAYKASFEALQKERLEVLNQREAEVNATLAQIESLKEQNTKLLEEQQKILNSINE
                     KTEGRIKEIYSQMKDTAIADVLTQMDAEDASKIMLSLESRKISGVLSKMDPAKASELT
                     LLLKNMDNNKSN"
     gene            complement(7032..7460)
                     /locus_tag="SB143_000984"
     CDS             complement(7032..7460)
                     /locus_tag="SB143_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEF9749530.1"
                     /translation="MKSKYNSVAKVRKQQLDKAQSNLNAAKQRQIENERLYELSRKEC
                     ESLSVLPSSGSIAELRSNLTMAQVGRDALARAKERVELSKKEMNHYQFLYQKAHLDYE
                     KIKVLEAEEIKQKQKELAKIEEKILDEIAITRFLKGEKNV"
     gene            complement(7457..8707)
                     /locus_tag="SB143_000985"
     CDS             complement(7457..8707)
                     /locus_tag="SB143_000985"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEF9749531.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDYVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHSRCINVIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKDAIGTTGKGIGPSYADKINRTGHRVGELLDPQRLHNALMK
                     DFEANKNYLEFLGIEIPDSDKLLSDLKRFNEILTPFITDTTRMLWKALDEDKKVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEVGSIIGIVKAYTTRVGNGAFPT
                     EDKGESGEKIAQIGKEIGVSTGRKRRCGWFDAIAVKYTARLNGLDALSLMKLDVLDGF
                     EKVKICRAYEYKGMEIDYIPSDLENVKPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELCGVKIKYISTSPERDDTIIL"
     gene            complement(8729..8823)
                     /locus_tag="SB143_000986"
     tRNA            complement(8729..8823)
                     /locus_tag="SB143_000986"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(8787..8789),aa:Sec,seq:tca)
     gene            8980..10191
                     /gene="yedE"
                     /locus_tag="SB143_000987"
     CDS             8980..10191
                     /gene="yedE"
                     /locus_tag="SB143_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEF9749532.1"
                     /translation="MNSFKQKYLINFWDNSRAMITLGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMDLNGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWFFGVFMVLGIYLG
                     VKLCNTSFFKPKAKLQCANKENIPLLKQNSRAKFHFVLGSILFVAFLIWVFYLVLVNG
                     NISTQSKQSLLALALIFGFAFGFIISRGQICFTACFRDLFLFGRENAIKGALIGMIIA
                     SLIAFAFILHGHNSKLIELSPAVAIGAFLFGFGIVFAGGCECGWTYRACEGQSHFMIV
                     GIANIVGTMILALTYDFLPSAFKEGVKINLLNEFGNLGGFFINLALFILMFACVLFYK
                     KHFFQKLNQKG"
     gene            10195..10422
                     /gene="yedF"
                     /locus_tag="SB143_000988"
     CDS             10195..10422
                     /gene="yedF"
                     /locus_tag="SB143_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEF9749533.1"
                     /translation="MKITYTLNLEGEACPYPAIATLDALPQLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKILEIDQNGPTLRFLIQKP"
     gene            complement(10564..12045)
                     /gene="putP"
                     /locus_tag="SB143_000989"
     CDS             complement(10564..12045)
                     /gene="putP"
                     /locus_tag="SB143_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEF9749534.1"
                     /translation="METVQINTPIAIMFVAYAALMLYIGFYFYRQNKNTEDYFLGGRS
                     LGPVVSALSAGASDMSGWLLMGLPGALYASGLIESYIAIGLSIGALLNWSFVAKRLRI
                     YTSVIANSITIPDYFETRFDDDKHILRIVCAIVILIFFTFYVSSGLVGGAKLFEATFG
                     IRYEYALTTGTLIIVAYTFLGGYKAVCWTDLLQGLLMMGALIVVPAVMLYHLGGFGEA
                     MAVIEEIKPNALSMGEGIGALSIVSALAWGLGYFGQPHILVRFMSIRSTKDIPAATFV
                     GISWMVISLIGACFIGLLGIAYVHKFELTLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKRIFNKEASNKTVMNLGRIGVLLVALVAFVISTDK
                     ESSVLSIVAYAWAGFGASFGSVMLFSLFWSRMTRIGAILGMITGAVMVVLWKNYLAEL
                     FNFPIYEIVPGFVAASAVIIIASLLTQVRPGTKAAYERMLKEL"
     gene            complement(12060..>13331)
                     /locus_tag="SB143_000990"
     CDS             complement(12060..>13331)
                     /locus_tag="SB143_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEF9749535.1"
                     /translation="KFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYEDEEFKK
                     TLVDAAASMAVGNPFEFKNKLGTLADKPSAKVEKALNELAPYEEWALKPQFLENNPYL
                     MTPGIKYGTKKGDFTHMNELFVPILSVMKAKDLKEAIEIVNSTGYGLTAGFESLDERE
                     WEYFHTHIEAGNIYINKPTTGAIVLRQPFGGVKKSAIGFGRKVGIYNYITQFLDISTS
                     EADENLLNNELVKTLEKIDLGTNEENKKALNNAILMAKSYAYHYRNEFSVSKDYVNIR
                     GEDNLFSYTKIKNLAFRVCENDNLQDILGVIIAANILNIPLSVSYEENDKISLVKELC
                     KAINLNLEITNESKAQFVSRLKNFERIRYHGKVSVEDEIYQEAAKEAKIIIREKPLLN
                     GRFELLFYHNEKALSVSFHRYGNLGIRALNH"
BASE COUNT         4383 a         2515 c         1769 g         4664 t
ORIGIN      
        1 ctagcaaaag catcttttac ctcttgattt ttcatttgat caactatagc ttgtgcttcg
       61 gcttttattt cagcttgtgc ttcttcccaa gtacctaact tggttccatt ttcagtatca
      121 taagggacat taaacacttt tttaacagtt aaagcttctg cataagcagt ttccatgtcg
      181 gcattgtttt taaacatatg cttataagca ggcataatag aatttggaac aactgaaaca
      241 ggatcccaca tatggttttc atgccagtct gtagttctat aatttccaac acgcattaaa
      301 tcaggacctg ttctttttga accccaaaga aaaggtctat cataagcaaa ttcgccactg
      361 acagaataca taccataacg atcagtttca gatttaaaag gacgaataag ctgtgaatga
      421 caagcattac agctatcttt gatataaatt tggcgtcctg caagctgtaa aaccgtataa
      481 ggcttctttc cttctatagg tcttgcattt tctgcaaaat ttggcagcac ttcaataatc
      541 ccagcataag caatcacaat aaaaacagcg acagcaaaaa agaatggatt tttttctaac
      601 caactaaaca ttttctctcc tttttatgca gccataggcg aagcgctttt tggctcttta
      661 tcaagcactt ttccacaagc aattgattta taaatattat aagtaaacat gaaaaatcct
      721 ataagatata ataaaccacc aattgcccta atccaataat aaggtataat agctacaaca
      781 gtgtcaataa agctgtaaag caagttgccg tattcatctg tagctctcca catcatacct
      841 tgagtgatac ctgctatcca catagaagca aaataaagca ctatacctgt agtttgaatc
      901 caaaattgtg cttccattaa agatttgcta taaagctctc ttctaaatat tctaggagtc
      961 atatgataaa gtgctgccat agtcataaaa ccaacccaac ctaaagttcc atcatgaaca
     1021 tgtcctggaa tccaatctgt aaagtgagct agagcattta ctgatttaat tgaaagaatt
     1081 ggaccttcaa gtgttgagaa catatagaaa gttgatgcta aaatcataaa tttaatcaaa
     1141 ggactttcac gaagttgact ccattcaccc ttcatagtaa gtaagatatt tatcgctgaa
     1201 ccccaagaag gtaagataag cacgatagag aaaaccgaac ccatagtttg catccaatca
     1261 ggcacagttg aataaatcaa gtgatgtcca cctgcccaaa gataaacaaa catcaagccc
     1321 caaaacgcaa ataaagaaag tttataagag aaaatcggtt gaccgctttc ttttggtaag
     1381 aaataataaa tttgagcaat aatacccaca gtaaatacaa aagcaaccgc attgtgccca
     1441 taccaccatt gaactaaagc atcatttgtc cctgcataca tagatacact atgccaccat
     1501 ttacccattt ctgcaacaaa ataagttgga actgccatat tgttaaaaag ataaagcata
     1561 gcaataccta aaaatgtagc tatgtaatac caaagagaaa tataaagggt tttttcacgg
     1621 cgaattccaa taagtccaaa aatgcttaca ccccataaaa cccaaataag cacaacaaga
     1681 atatctaaag gccactcaag ttcagcatac tctttagagg tacttacacc tgcaaataaa
     1741 gaaattacag ctacaatcat ggtaatcata taaagccaaa aatgaagctt gcctatagcc
     1801 attagaaatt tggattcagc catacttact ttaagaacac gctgtcctat ataataccaa
     1861 gttgcccaaa tccctgaaag cataaaacca aaaatcacac cagaagtatg aagcggtcta
     1921 agtcttgaaa aagtagcata ttcgcctgct aaatagttta gattaggata tgccatttga
     1981 aaagctataa gagttcctat agccatacct acaatcccga acaatatagt cgcaaacata
     2041 aagtattttg caactgtata gtcgtaattt aatgcattac ctgggtgcat cgactttctc
     2101 cttaaaattt ttaagataac aagtttatat tatagactat taattataca ttttttctta
     2161 aagccaatat ttttgttaat catttgttat tttttatatt ttaaagaatt tttttgtcct
     2221 aattttctat attgatttta tatcccaaac ctggaacatt tttaataaat ttttctccaa
     2281 ctttatctct tactcttttt ataaaagttc taaccgcagt atcgctaaca tgctcaccta
     2341 tccaaacatt cttcttaata tcttcatgca ataccaaaac cccaggctgc tttaaaagca
     2401 atgaaataaa agcaagctct tttttggtta aaacaatttc ttgtccttta tgaattaata
     2461 ttcttttagt cttattgaat tgatactctt tagaaatatc aacaagcgcg ttagtttcta
     2521 tcttttcacc cactaaataa tccaaaactt taaaaagttc atctacatct acaggtttga
     2581 ttaaatattt atctatacct atatcaatag aacgcaacaa tctttctttt tccgaataag
     2641 cactgagcac tacaatagga acatcatttg ctatttcttt aatttctttt gccatatcaa
     2701 gcccatccat gataggcata gcaatatctg taataatcaa atcgggctta aattttttaa
     2761 atttctttaa accctcatca ccattttgtg cacctattac cttgctgtaa cgagaagata
     2821 aaacattaac aagcgattct ctaattttta cttcatcttc tacaaccaat ataaccaatt
     2881 ctttcataat ttaattcccc tcttgcaact ttaaatatat ctcaaaacaa gcaccatctt
     2941 ttatattttt aacttgaatt tttccaccaa aactctctac gatttgcttg ctgatgtaaa
     3001 gtcccgctcc tataccttga ctaggatgtt tagttgtaat atagggttga aaaattttgt
     3061 ctaaaatatc ttcatcaacc ccgcctgcat tatccttaac cttgacttta atataatttt
     3121 ttccaaattt ggaaaaacta aatataatat tttttacttt ttgagtctta aatgcctcta
     3181 tggaatttat aattaaattt aaaaaaactc tcattaagcc attctcatgc gctataactc
     3241 tataatctgt ttttgagatt attcgagtat taacttgatg tttttctatg gtttcaaaag
     3301 caatgccaat taccttattt aaaatttctc ttaaagaaac atgatttttt tcgttttcat
     3361 tatttttaaa taaagttcta aaaatatcaa ttgtttctga catatttttt atcgtacttt
     3421 tagattgtag ataaatttcg gtaaaaccct tctcatcttg aacattttgt ttcatttgaa
     3481 acatagcaat accaagctca tttagaggtt gtctccactg atgtgcaata tcgctaatca
     3541 tctgctctat agaagaattt aaaatttctt tataaatctt ttttgtatct ttctcatttt
     3601 tttctaaagc aactttaagc ttatactcaa aatctttgct tagttttgca aattcttcct
     3661 tgcgctcttt agctgtcttt tcaagattta cactaatttc acgcaatttc gcatgattta
     3721 atacaagttc ttcatttaat ttaaaagaat tgctaatatc ataagataaa gcaataattt
     3781 catttaaatc acccttatta tctacaatag gaattaaaaa tgcgtcaaga taaaaagttt
     3841 tgcctagctt atcgacattt ttaaaaacca cccaataagc ttctttttgc caaagttttc
     3901 ctaaaagttg attgatataa ctttctttaa catcaggatg ttttaaaata aaatgatgct
     3961 ttccaatcaa ctctttttta ctataaccac ttatcttgca aaatttttca cttgcatcga
     4021 taattatacc ttgtaaattg atcttaaaga aaattgtctt tttttctatt acttttaaaa
     4081 cttgctcggc aactgaattt gccatttaaa aagccttaaa acccatataa gctaaaccta
     4141 ttccataagc tacaataatg aaataagata aataattaaa tacttttttc aaaaatacac
     4201 ccaaatattg tgatattttg aaaaaaaaaa gcattgctgg aagggttgaa agaccaaaaa
     4261 ctagcataac caaaatgctt tctgtaacat tttgcctact cattgcattc gctagaaaaa
     4321 aatacaccaa accacaagga acaaacccat tagcaaaacc taaaatcatt gccgatttta
     4381 cacccttaaa acccatagat tttttaataa tcttttttat aaaatactca aaaaaagcgc
     4441 gattttcgat aaaagcaagg attttacctc taaaaattaa agaaaaacct aaaattacca
     4501 taaacacacc gagtataaaa aaggataagc tttgaatttt ggcatttata gctaataaat
     4561 ttccaaatat cccaaagatt attcccaata aaatataaga aaaaattcta aataattgat
     4621 aaataaaagt taataaaaac aaatttttgt gggttgaatt taaattcata aaagctaaaa
     4681 taaatccccc acacatagaa tagcaatgcc caaagctcga taaaaaggct acactaaata
     4741 tagccaaaaa gtcaaaattt agaggaagga aattcacatt aaattcataa attctttaaa
     4801 aatatattta ctttcgtgcg gacctgatga actttcagga tggtgctgca ccgaaataat
     4861 aggatagtct ttatacctta caccctcgac attatctcca aaaagatttc tatgcgttat
     4921 aattgctact tcgcaaagct cttcaggaac attataatta tggttttgag cagtgatttc
     4981 aacacttttg ttttctaagt tgatcacagg atgattagct ccgtgttgtc caaatttcat
     5041 tttataagtt tcatatccaa aagcattact taaaagctga tgccctaaac aaattccaag
     5101 cataggaatt ttagcctcgg ctaatttttt aatttcagca atttcttgtt ttaaaatttt
     5161 tggctctcct ggtccatttg aaagaaatac accttgaatt tgaccttttt gataaagctt
     5221 gataagttct tctgctttgg tattataagg aaaaacttct acttctaaac ccacttccac
     5281 aagctcattg agaatgtttg ctttcacacc ataatcaata acagcaactt tttttgtatt
     5341 ttttttagcc ttattgtaac tttgggtagc attattccaa actccatgtt tgtgagcgta
     5401 ggatttttta gtacttactt cttttacaaa attaatctca tctatttttg cagatttttc
     5461 caaagctgct tttaattctt ctttgctaga gatttcagtt gagataactg ctcttaaatt
     5521 tccgctgtct cttaacattt ttaccaaata gcgagtgtct agtccataaa ctcctatttt
     5581 tccatgttct tctaagtatt cttgtaagct tttttgagca cgaaaattag aaaaagtagg
     5641 gcttaattct ctcatcaaaa cgccacttgc aaaaatttct ttactttcgt tgtcattttc
     5701 attggttcct acaatgccta tttcaggcat agaaaaaatg ataaattgtc ctgcatatga
     5761 aggatcagat attatctctt gataacctgt taaagaagta ttaaatacaa gctcgccaaa
     5821 aaaagttcca cccttgccaa aagccttagc agttaaaaaa atatcatttt ctatataaat
     5881 ataagctttc ataatttaaa acattccttt ttttctaagc tcttcttggt aaagtttttc
     5941 aaaaataagc tcatattctt cgctacctgg aataggtttt gttttataat tgtttatttt
     6001 ttcataaacc tcatcttcta atttttcata aattttaaga tagtcatcta tgctagaaaa
     6061 aattaaattt ttcactctat tttcgcttac cacaaaatta atataatcat tttctataag
     6121 ttcttctaaa attctatgcg ctaaatgatt gtgtctatct tcagaattta aaatcacacc
     6181 aaattcagga gctaattttt tcttaacaag ccaaaacata tttttacgat ctacttgcat
     6241 aagctccatt tcatcttctt gttgttctaa aagctcttta actctttcat ctagctttct
     6301 ttcattcata agatcatctt ctaaaatttg tttaatgcaa gggtttaact tttcaatatt
     6361 gtctttaatt tcaacaaaag aggaatgtgc aatatctaac attattttat ttgtaatata
     6421 aggtatatgt ggcaatttta tacgcatttt caagcctttt cactaataat tttgaaataa
     6481 taatatattt ttggtaaaag aatgttaaaa aattaaattt ttaattgctt ttattattat
     6541 ccatattttt tagcaataag gtcaattcgc tcgcttttgc aggatccatt ttagaaagca
     6601 ctcctgaaat ttttctagac tctaaagata gcatgatttt actcgcatct tcagcatcca
     6661 tttgggttaa aacatcagct attgcagtat ctttcatttg cgaataaatt tctttaatcc
     6721 taccttctgt tttttcattg atagaattta aaattttttg ctgctcttct aaaagttttg
     6781 tattttgttc ttttaaactt tcaatctgtg ctaaagtcgc atttacttcg gcttctcttt
     6841 gatttaagac ttcaagcctt tctttttgca aagcttcaaa agaagcttta taagcttcta
     6901 aagcttgcct tgcctcatca aattctcttg tttgaagttc aagttgtgct tttctggctt
     6961 caaaatactg ctcacaatct tgctcagctc cccaagctaa atttatgaaa aaagctaaaa
     7021 ataaaagtct tttatacatt tttttctccc ttcaaaaaac gagtgatagc aatttcatct
     7081 aaaatttttt cttcgatttt agcaagctct ttttgttttt gtttgatttc ttcagcttct
     7141 aaaactttta ttttctcata atctaaatga gctttttgat ataaaaactg atagtgattc
     7201 atctcttttt tagataactc aaccctttct ttagcccttg ctaaagcatc tctgcctact
     7261 tgagccatgg ttaaatttga tcttaattct gcaatagaac ccgagctagg taaaacagat
     7321 aagctttcac attctttgcg tgaaagctcg taaagtcttt cgttttcaat ctgtctttgc
     7381 tttgctgcat taagattgct ttgcgcctta tcaagttgtt gttttcttac ttttgcaacg
     7441 ctattgtatt tacttttcat aaaatgatag tatcatctct ttcaggactt gttgaaatat
     7501 attttatttt cacaccacaa agttcttcta atcttgcgat atatttttta gcattttcag
     7561 gcaataaatc ataatctttt ataccaaaaa ccttatccca accatccatt tcttcataaa
     7621 taggcttaac attttccaaa tcacttggaa tataatcaat ttccataccc ttatattcat
     7681 aagcacggca aatttttacc ttttcaaaac catctaaaac atcaagtttc attaaagata
     7741 aagcatctaa gccgtttagt cttgcagtat attttaccgc aatagcatca aaccaaccgc
     7801 agcgtctttt gcgtcctgta cttacgccta tttctttacc tatttgagct attttttctc
     7861 cgctctcacc cttatcttcg gtaggaaaag ctccatttcc aacgcgtgtg gtataagctt
     7921 ttactatacc tataatagag cctacttctt taggatttaa accaagacct gttaaagcac
     7981 ctgctgaaat tgtacttgaa cttgttacat aaggataagt tccatgatct atatcaagca
     8041 tagagccttg cgcgccttct aaaagcactt ttttatcctc atccaaagct ttccaaagca
     8101 ttcttgtagt atcggttata aacggagtta aaatctcatt gaagcgtttt aaatcactaa
     8161 gtaatttatc tgaatcagga atttcaatcc ctaaaaattc taaataattt ttatttgctt
     8221 caaaatcttt cattaaagca ttgtgaagtc tttgaggatc taaaagctct cctactctat
     8281 gtccggtgcg gttaatttta tctgcataag aaggtcctat acctttacct gtcgtaccta
     8341 tagcatcttt acctttgagt ttttctttag caatatctat caaagaatgg tgctttaaat
     8401 ttaaatgtgc tctatcgcta atatacaatc tgccttttaa attttcaaat tgagccattt
     8461 cagcgattaa aacttcagga gataccacaa ctccattgcc aatcacatta atacaccttg
     8521 aatgcaaaac accacttggc ataagatgaa gtgcgtatct tacaccattt acccaaatgg
     8581 tatgtcctgc attatgcccc cctgcactgc gacacacata gtcataattt tcacataatt
     8641 tatctactac tttgccttta ccttcatcac cccattgaat tccaacaata atatctgctt
     8701 tactcattat tttccttaaa ttttacggcg agaagatgag agaatcgaac tccccaaaga
     8761 atagtcaact accctttcat ctgatttgaa gtcagtgacg atcaccagat acgctaatct
     8821 tccaaagtta taattatagc tatttttaaa tgaaaaacaa aataaatttt caaattttat
     8881 caaagcatca ctgatttttg actttagttt aaaattaggt tataatctca ctcttttttt
     8941 agcatcaagg tttgatgatt acatttttag gatctttctt tgaattcttt taaacaaaaa
     9001 tatttaatca atttttggga taattcccgt gctatgataa cacttggaat tttaagtgca
     9061 gtatactttg gaatttttgg tggtgtttgg gctgttacgg gagaaatgac gcgttggggt
     9121 ggagaatttt tagagctttt aggtatggat ttgaatggat attcttatta tcaaaagcaa
     9181 aatttaaatg gtactccttt aacgagaacc gatggaatca tgcttatagg catgtttata
     9241 ggttgtttag tagccgcact tttagccaac aaagtcaaat ttcgcttacc cgctagcaat
     9301 ataagaatct ttcaagctat agtaggtgga attctttcag gctatggcgc aagacttgcc
     9361 tttgggtgta acttggcaaa cttttttaca ggcttgcctt atttttcact gcatacttgg
     9421 ttttttggtg tttttatggt tttgggaatt tatcttggtg taaaactttg taacacttcc
     9481 ttttttaaac ctaaagcaaa attacaatgt gcaaataaag aaaacattcc tttgctcaaa
     9541 caaaactcgc gtgcgaaatt tcattttgtt ttaggtagta ttctttttgt agcattttta
     9601 atatgggtgt tttatcttgt gcttgttaat ggcaatataa gcacacaaag caaacaaagt
     9661 cttttagctt tagcactcat ttttggcttt gcgtttggtt ttatcatctc cagaggacaa
     9721 atttgtttta ctgcttgttt tagagattta ttcttatttg gtagggaaaa tgctataaaa
     9781 ggcgctttaa tcggtatgat aatcgcttct ttgatcgctt ttgctttcat cttacatgga
     9841 cacaatagca aactcatcga actctctcct gctgtggcta ttggggcatt tttatttggt
     9901 tttggtatag ttttcgcagg gggttgtgaa tgcggatgga cttatcgtgc ttgcgaggga
     9961 caaagtcatt ttatgatagt gggtattgca aacatcgtag gaacgatgat tttggctcta
    10021 acttatgact ttttacctag cgctttcaaa gagggcgtaa aaattaactt gctcaatgaa
    10081 tttggaaatt tgggtgggtt tttcataaat ctagctcttt ttattttaat gtttgcttgt
    10141 gttttatttt ataaaaaaca cttctttcaa aaactaaatc aaaaaggata aaaaatgaaa
    10201 attacttata ctttaaattt agaaggtgaa gcttgtcctt atcctgctat tgctacgcta
    10261 gatgccttgc cgcaacttaa aagcggagaa atcctagaag tgctttgcga ttgtccacaa
    10321 agtatcaatt ctatacctca agatgcaaaa aatcgtggtt ttaaaattct tgaaatcgat
    10381 caaaatggtc ccacacttcg gttcttaatc caaaagcctt aaatttggct ccaaatttaa
    10441 agagttgata aacttttgct ctagttttaa ttttaaaagc tggggcaaaa aatttcattt
    10501 tgagataaaa aagtaggaaa tttggaggat atttaaacaa atatcctcat tttctaaaaa
    10561 atcttaaagt tcttttaaca ttctttcata tgcagcttta gttcctgggc gtacttgagt
    10621 aagtaagctt gcaatgatta tcactgctga agcagctaca aagcctggaa ctatttcata
    10681 aatagggaaa ttaaagagtt ctgctaaata atttttccaa agaacaacca taacagctcc
    10741 tgttatcata cctaaaatcg ctcctattct tgtcattctg ctccaaaata aagagaaaag
    10801 cattacagaa ccaaaacttg ctccaaatcc tgcccatgca taagctacaa tacttaaaac
    10861 acttgattct ttatctgttg aaatcacaaa agcaaccaat gctaccagta aaacgcctat
    10921 tcttcccaaa ttcatcacag ttttattaga tgcttctttg ttgaaaattc ttttataaaa
    10981 atcctctgct atggtagagc ttgatacaag aagttgtgaa cttgcagtac tcataatagc
    11041 agccaaaata gcactgagta aaatacctgc tatccatgga ttaaataaaa gttgcgacat
    11101 tacaataaag attttttcag gatcttgaag agtaagctca aatttatgca cataagctat
    11161 ccctaaaaga cctataaagc aagcacctat caaagaaatc accatccaag aaattcctac
    11221 aaaggtagcc gcaggaatat ccttagtaga acgaatagac ataaagcgca ccaaaatgtg
    11281 aggttgtcca aaatatccca agccccaagc aagtgcagaa acaatgctta atgctcctat
    11341 accctcaccc atggataaag cattaggctt aatttcttct ataacagcca tagcctcacc
    11401 aaaaccacct aaatgataaa gcataacagc aggaacaacg atcaatgcac ccatcattaa
    11461 aagtccttga agcaaatccg tccaacaaac tgctttatat ccgcctaaaa aagtataagc
    11521 aacgataata agcgtcccag tagtaagcgc atattcatat cttataccaa aagttgcttc
    11581 aaataatttt gctccaccca caagtcctga tgaaacataa aaggtaaaaa atatcaaaat
    11641 gacaatcgca caaactatac gcaaaatatg cttatcatca tcaaatcttg tttcgaaata
    11701 atcaggtatt gtaatagaat ttgcaatcac acttgtataa attctaagtc tttttgctac
    11761 aaaactccaa ttcaataaag ctccgatact aagtcctata gcaatataac tctctataag
    11821 tccacttgca tacaaagccc ctggcaaacc catcaaaagc caaccgctca tatcagaagc
    11881 ccctgcgctt agtgcagaaa ctacaggacc taaagaacgc ccacctagga aataatcctc
    11941 tgtattttta ttttgcctat aaaaataaaa acctatataa agcattaaag cagcatatgc
    12001 cacaaacatt atcgctatgg gggtattaat ttgaactgtt tccattttta ctccttgatt
    12061 taatgattta acgctctaat gcctaaattt ccatagcgat ggaaagatac acttaaagct
    12121 ttttcgttgt gataaaataa aagctcaaaa cgaccattta ataatggttt ttctctgata
    12181 ataatcttag cttcttttgc cgcttcttga taaatttcat cttccacact cacttttcca
    12241 tgatagcgaa ttctctcaaa attcttcaat cttgaaacaa attgagcttt gctttcattt
    12301 gtgatttcaa ggtttagatt tatagctttg caaagttctt ttactaaaga aattttatcg
    12361 ttttcttcat agctcacgct caatgggata tttaagatat tggctgcaat gataactcct
    12421 aaaatatctt gcaaattatc attctcacac actctaaaag ctaaattttt aatcttagta
    12481 taagaaaaga gattatcctc gccgcgtata ttgacataat cttttgaaac actaaattca
    12541 tttctgtaat gatacgcata agattttgcc atcaaaatag cattgtttaa agctttttta
    12601 ttttcttcat ttgtgccaag atctattttt tctaaagttt taacaagttc gttattgagc
    12661 aaattctcat cagcttcact tgtgcttata tctaaaaact gggttatgta attataaatt
    12721 cccacttttc taccaaaacc tatagcagat tttttcaccc caccaaaagg ctgacgaagt
    12781 actatagctc ctgttgtagg tttattgata tagatatttc ctgcttctat atgagtgtga
    12841 aaatactccc attctctttc atctaagctc tcaaatcctg cagtaagacc atagcctgtt
    12901 gaattgacta tctctatagc ttcttttaaa tcttttgctt tcattacact taaaatcggt
    12961 acaaaaagct cattcatatg agtgaaatca ccttttttgg tgccgtattt tatccctgga
    13021 gtcatcaaat aaggattgtt ttctaaaaat tgaggtttta aagcccattc ttcataaggc
    13081 gctagttcat ttaaggcttt ttctacttta gcactaggct tatctgctaa tgtgcctaat
    13141 ttatttttaa attcaaaagg atttcctaca gccatagaag cagctgcatc tactaaagtc
    13201 tttttaaatt cttcatcttc ataaacttct tcctctaaaa caagcaaaga agtagccgag
    13261 catttttgac cgctgttgct aaaagcagaa tggataatat ttttaatcgc gctgtcacga
    13321 tctgcaaatt t
//
LOCUS       DARAII010000043        13186 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.043, whole genome shotgun sequence.
ACCESSION   DARAII010000043 DARAII010000000
VERSION     DARAII010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13186)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13186)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13186
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.043"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1821
                     /locus_tag="SB143_000991"
     CDS             <1..1821
                     /locus_tag="SB143_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB4"
                     /protein_id="HEF9749536.1"
                     /translation="LNGNLQNIQFGHDTIQFNQNDSTKRFARCIEIKDYTNETFAGIL
                     DILMYLDVEYTITQSFSPIPRVDAKSTISKQKKQLIATEDDGFSQVEQIDEALDQLTN
                     GEISFGKYHFSILVYGNTIKECKDNTNEVVTKMNELGFGVTLATIALPATFFSQLPSN
                     FAIRPRINLISSINFSSLIALHNFSMGKRDKNCWGDAVTILKTPNKQPYYFNFHQSSG
                     VNKNDFGKFFLANTLILGQSSGGKTVFMNFIVDQMMKYASKDTFPDDIPEDKRKFTAI
                     YLDKDKGALGNILCAGGRYISIENGKPTGFNPFMVESTQENIRQLQSLMKLLVTRNNE
                     ILTTREEEMLNNAVNSLMKGFEKEERKYPISLLLENLTENVDDDNSLKSRLALFKKGK
                     QFGWVFDNEYDSLDFPDDINLFGIDGTEFLDDKDVSGILSYYILWRVMSLADGRRLCI
                     DIDEAWKWLENEIVQEEVKNKFKTIRKQNGFLRLATQSLEDFLKLKNAATLIEQSSTM
                     VFLSNPKAKEEEYVKGVGLSYDEYMIIKGFNPVKRQFLIKRQDEKVICTLDLSPLGNE
                     NLKILSTETAYIDVIEKIFSQENKSLDEKVLELKEIYKNS"
     gene            1832..2389
                     /locus_tag="SB143_000992"
     CDS             1832..2389
                     /locus_tag="SB143_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEF9749537.1"
                     /translation="MSNKVIINKQEVQFGTQDNQIFCTSLDVAKVFGKQHKNVLRDIE
                     NILNDLREIGTSNYLLNFELSFKVHKIQGFKGRERKYPYYQLTKDGFFLLAMGFTGKK
                     ALQFKIAFIKAFNEMEKLLQKEIKSPNKYLTDLMELIYPNLPQNDYKVSVTITDNPYS
                     KEAKNVFSLNYLVDNRTPKDPKKLQ"
     gene            2386..2937
                     /locus_tag="SB143_000993"
     CDS             2386..2937
                     /locus_tag="SB143_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749538.1"
                     /translation="MSDKELEIFELCERLVDLLGDKEAVADLQTLLERHPEMFQNKEQ
                     VANLIKKVIHDPEIIINNPTPKSEKDYIAGKKLNEKKMGEVGIRKDENISKIFHANEK
                     RIKNLELMAKKDVVVDGRNAHTSYTQAQSLDGRLVQKNISSATNKIIPQQNKSTNDFK
                     AKLEEFSTKKTNAVKSINKEFKR"
     gene            2971..3393
                     /locus_tag="SB143_000994"
     CDS             2971..3393
                     /locus_tag="SB143_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEF9749539.1"
                     /translation="MNNVNLIGYLGKDFEVGTTNSGRVYAKNSLAITKRWKNERGNEE
                     SSTTWIPIVLFGKSAESASTHIKKGSQFACSGELSSNQYQDEDGNTRTMLSVIVSKFY
                     WLGKKDKDDTGTQNPQVPPKEPNIDYENTNIDEETQVF"
     gene            3415..3684
                     /locus_tag="SB143_000995"
     CDS             3415..3684
                     /locus_tag="SB143_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006803305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749540.1"
                     /translation="MKNLSVEELAQELETSNHEKLIKALFLFEKSSSMEDLNSDQIEI
                     ILDEVYEFYINHKSISSFLQEDINQALDEAIDKELCKKQEKSFER"
     gene            3688..4677
                     /locus_tag="SB143_000996"
     CDS             3688..4677
                     /locus_tag="SB143_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEF9749541.1"
                     /translation="MKKNIFGVNKAIGKSHPHENGERLISLDYNYTKEYNYNYEICVT
                     QFNHLFSEVKSSHRVAALWLTPQNYIQKFKKSILIFTSILILPCFSLGAGIPVVDVTA
                     NQQMATQNAKQVAEWAKEASRWTETVSHYQKQIQAYKDELLSKTGVRDSVSFVKDIKQ
                     IYSDFAESGQNIQSFYNDVLRDPQKFLSDKGNEIFGKYTSFDRCNFDFLSQSEKNICK
                     MNLITYAAQVETYNQASKQMDTISQTLQKLQDKLVNSKDIKESTDVGNAIQLEVAKIQ
                     MVKNQVDLANSSYENQRRIQEDMAIQEYSKSFDYKPQISTKELMQKAREQNKQ"
     gene            4674..5669
                     /locus_tag="SB143_000997"
     CDS             4674..5669
                     /locus_tag="SB143_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEF9749542.1"
                     /translation="MNDLFQTLGESIQQIIDAIRQVGTSDKVAELSVLLSIIITLVIM
                     YKGYEVLMGTSQSPIRELTWDIAGKLLAITFALNIGGWLTLVINAMDGIYEWAGGGTQ
                     MYKTLDEMYANTTQLANIIWAKSSGVGGAILAIVAMLLCYVGFIIAVAPTFAILVVTT
                     FTQTLLVITAPIVFWLLIFKSTKNVFTQWIGLLLSNTLVILLVGLFLKTFMGEINGWI
                     VSLSQHVQSGSEVLGTSIFFVIASLVLVIMIISAKIYAEKIANVSMEGAMGGAIGSAL
                     NPVSRLAGWTAGKTTGKTVNAGKTGVKLAAKGAWAGTKGGYSFAKKMYERARNAG"
     gene            5659..5823
                     /locus_tag="SB143_000998"
     CDS             5659..5823
                     /locus_tag="SB143_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749543.1"
                     /translation="MQAKLIFILLLGVLFFSACSTKNQGKYDEFFNNQTGWIPINQNK
                     DLNKGTMNEK"
     gene            5813..6472
                     /locus_tag="SB143_000999"
     CDS             5813..6472
                     /locus_tag="SB143_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEF9749544.1"
                     /translation="MKNDFNSAMDYEASFRYLIDKSNKRAWLIAFVSIFIAIISIVAV
                     VLLTPLKTIEPYVIRVDNTTGMVDILTMLDEKEISSNEALDKYFISQYVKAREGYYYE
                     LLNQDYLLAQLMSSEKVANEYRAWYEGENARDQILKNSNEVNVQILSIVLGNSNGVKT
                     STIRAKIITKNLNTRGLSESTKVITLSYDYILAKASEENRILNPLGFKVTNYRIDEEI
                     R"
     gene            6469..7359
                     /gene="virB9"
                     /locus_tag="SB143_001000"
     CDS             6469..7359
                     /gene="virB9"
                     /locus_tag="SB143_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein VirB9"
                     /protein_id="HEF9749545.1"
                     /translation="MKNITLAILSFLFLAPAFALNIPKTSSFDKRIAYAVYNANDVFQ
                     INAKNGYVSVLEFGIDERIINTATGFAEGWDLIEKDNLLFIKPKAYKTQLVQQDNNMG
                     ESQVSQEFVLDPNPKDWKTNLIVITNLNTYVFDLKLVNQNNNTTYKLSFSYPKKDLEA
                     TKEFLEAQEQEKIRTDLNKNTIPRNWDFYMKVNKGSEDIAPNFAYDDGVFTYLGFDNT
                     KTFPAVFMYDNGKESILNTHIKKDGNYDVLVVQKIAKQILLRSGDKVVGVFNRGYAKN
                     PLNKTRETSNENIQREINKK"
     gene            7369..8547
                     /gene="virB10"
                     /locus_tag="SB143_001001"
     CDS             7369..8547
                     /gene="virB10"
                     /locus_tag="SB143_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB10"
                     /protein_id="HEF9749546.1"
                     /translation="MQDKEQDNLDNDFENHTSDLHEQKNHLKKIQAYAIFAVGGLLFI
                     FLMVYFLKSFSGNNNDIEEAPKEENNDIAQSVKTKEFAPPPSSAQKTFDELVAQEQPT
                     QTTALMLEAEPPKPRIVKGIGVTVVASSNNGFNGGSTGDRGEFGDKPNTVFEFGQNGS
                     GALQNSNNFQSGGEFTGEVFTPTIAKVSEFDQNLLLPKGTYIGCALKTRLVSSIKGGI
                     ACIVSNDVYSANGNTLLIEKGSTITGTFNAGQLDDGMDRLFVIWQEIRTPNNIIIPVY
                     SGATDELGASGMQGWVDHHYLKRFGSAILLSMIDDSLAILADQITGKDNKNNYANYTE
                     NTRDSAKEIANTALEKMIDIKPTLYKNHGDLVGVYVNRDIDFSKVYKLTRKKNVNNAR
                     "
     gene            8528..9541
                     /gene="virB11"
                     /locus_tag="SB143_001002"
     CDS             8528..9541
                     /gene="virB11"
                     /locus_tag="SB143_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type DNA transfer ATPase VirB11"
                     /protein_id="HEF9749547.1"
                     /translation="MSITLDKYTQKYFGEFLKDDNINEICYNGDNKIWVQNSKGLWES
                     VQTELDFESAGHFATASASFKKDKIDVSRPILSCILVGGERMQIVIPPATKSEHISIT
                     IRKPSKTRFKMEDHVKSGLFEDLNPDDKNIIKPSDEELIKLYKERDYQAFISKAVSYG
                     KNIIIAGETGSGKTTFMKTLIDFISLDDRIITIEDVEEIKFYEHKNFVQLFYPSEAKS
                     TDFLNSATLLKSCLRMKPDRILLAELRGAETYDFINVLASGHGGSITSCHAGSPEETF
                     TRLALMTLQNPQGQCVPFEIIQKTLKDLIDIVVHIHAHHGKRRISGIYFKEIENIKKD
                     SNE"
     gene            9534..10100
                     /locus_tag="SB143_001003"
     CDS             9534..10100
                     /locus_tag="SB143_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749548.1"
                     /translation="MSDKELEIFELCERLSKLLGDKEAIADLKKLYTNHPEMFKDMQE
                     VSNTIKEVVKEPELIIKNPRPKNEKDFIAVKHLQDKKQKIGDIGIRNDSGTNTIFHAN
                     ISSNRNFKRLAKKEQAVTGEAVHSLHTSRPAELGGNNQELSGANAHSVTANSIIPQQN
                     KSANDFKAKLKEFDAKGKNHIQTKEKER"
     gene            10101..11912
                     /locus_tag="SB143_001004"
     CDS             10101..11912
                     /locus_tag="SB143_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEF9749549.1"
                     /translation="MQNNKSIQIIFLAISSVFLTYLLTPLVFFFLNKVKIMKAIEIYN
                     INFTLQAIANGYPKIWLSLSITFGICFVVFSVLVLSLKAKKSQFGEARFANFNEIKKM
                     NLFGDKGIIIGKYKGKLLRFGGQQFVALGAPTRSGKGVGIVIPNLLEWQESAVVQDIK
                     QECFDYTSKYRKEILKQEVYLFNPFSRQTHRYNPLTYIDMSDKEHCDSQLMDLANILY
                     PLDGDSTSKFFNGLAQNLFIGLCYLWRDLQLTDMGKEFQKSFNVDVGNFNFYNILQLS
                     KGFSLKNEEKTLRGFDDTYNFLVYCEILDEATIRRLETYFNINSDATKSGVMSSFNAP
                     LVPFESETLRLSTETSDFDLRDLRKKKMTIYIGITPDQLANAQFILNIFWSQLILLNT
                     KELPQSNKELKYTCLMVMDEFTAPSRIPIYQSAISFMAGYWLRSLMIYQSNSQLETQP
                     PLGYGKEGAKTLLTNHACQIFYAPREQEDAEAISRILGNTTFKTSSRSINSGGNGGGS
                     RSISEASRALMLPQELREMPFENELITIDSGKPILCNKAFYYSDSYFMDKFKAVSKSL
                     SGIKKIPSRKQLEDAILKGECKIKIQIIGENNEKNVA"
     gene            11893..12324
                     /locus_tag="SB143_001005"
     CDS             11893..12324
                     /locus_tag="SB143_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cag pathogenicity island protein"
                     /protein_id="HEF9749550.1"
                     /translation="MKKMSLSLALITSLMVGCSAPKAKRLDDSSALSINNSILEHKYS
                     FVPKDPYLSGFNWTYHIVVEKKTVDDDFIKNDLVTKTFLLAHNSTKIILVGRDDLIKQ
                     YKHYFEKNQVLAPIELQPVSPIERDFNKVNILFFNKTNLGE"
     gene            12327..13085
                     /locus_tag="SB143_001006"
     CDS             12327..13085
                     /locus_tag="SB143_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749551.1"
                     /translation="MKKITFATILFFGVVSSSNAIKLDILTGDTKLACEAMLCLASPV
                     KPPECGAALARYFSIDARKWADVIAKRRSFLNLCPVDASSDPEMYKYKNDILVHLDGE
                     CSVSALNNRVEDTLLRTETIQKCSHGDGCTTEIIKHYGYRINPQLTNSCRLLASSKYT
                     DYHLKYTCNTKFYEKKDWERGYELKEVSQEIFNALPISQREQGEKLVPVSYAEFVRLP
                     ADKRKQGGFGKYYRVDIAFYQKIIIKKDCWINEK"
BASE COUNT         5052 a         1882 c         2255 g         3997 t
ORIGIN      
        1 cttaatggta atttacaaaa catacaattt ggacacgata ctattcaatt taatcaaaat
       61 gatagcacaa aaagatttgc tagatgcatt gaaattaaag actatacaaa tgaaactttt
      121 gcaggaattt tagatatcct aatgtattta gatgtggaat acactataac tcaaagcttt
      181 tctcctattc ctagagtgga tgcaaaatca acaatatcta aacagaaaaa acaactcatt
      241 gcaactgaag atgatggatt ttcacaagta gagcaaatag atgaagcttt ggatcaactt
      301 acaaatgggg aaatctcttt tggcaaatat catttttcaa ttcttgtgta tggaaatact
      361 ataaaagaat gtaaagacaa cacaaatgaa gttgttacaa agatgaacga attaggattt
      421 ggagtaactt tagcaacgat cgccctacct gcaacattct tttcgcaact accttcaaac
      481 tttgctatcc gcccacgcat taatctcata tcatccatca atttttcatc gctaattgct
      541 ttgcataatt tttctatggg caaaagagat aaaaattgct ggggtgatgc tgtcactatt
      601 ttaaaaacac caaacaaaca accttattat tttaattttc accaaagttc tggtgtaaat
      661 aaaaatgatt ttggaaaatt cttcctagca aatactttga ttttaggtca aagcagtggc
      721 ggtaaaacag tgtttatgaa ctttattgta gatcaaatga tgaaatacgc tagcaaagat
      781 acatttcctg atgatattcc tgaagataaa agaaaattta cagccattta tttggataaa
      841 gataaaggtg cgttaggcaa tatactttgt gctggcggta gatatattag cattgaaaat
      901 ggcaagccga caggatttaa tccttttatg gttgaaagca cacaagaaaa tataagacaa
      961 cttcaatcgc taatgaaact tttagtaact agaaataatg aaattcttac aactagagaa
     1021 gaagaaatgc tcaataatgc tgttaattct cttatgaaag gttttgaaaa agaagaaaga
     1081 aagtatccta tttctttatt acttgaaaat ttaactgaaa atgtagatga tgataattct
     1141 cttaaatcaa gattagcact tttcaaaaaa ggcaaacaat ttggctgggt atttgataac
     1201 gaatacgaca gtttagattt tcctgacgat atcaatttat ttggaattga tggaacagaa
     1261 tttcttgatg acaaagatgt atcagggata ttaagctatt acattctttg gcgtgtaatg
     1321 agcttggcag atggtagaag actttgtatt gatattgatg aagcttggaa gtggctagaa
     1381 aatgaaatcg tgcaagaaga agttaaaaac aagtttaaaa ccattagaaa gcagaatgga
     1441 tttttaagac ttgctacaca aagtttagaa gattttttaa agcttaaaaa tgctgcaact
     1501 cttatagaac agtcatcgac tatggtattt ttatctaatc cgaaagccaa agaagaagaa
     1561 tatgttaaag gagtaggttt aagttatgat gagtatatga tcattaaagg tttcaatcct
     1621 gtgaaaagac aatttttaat caaaagacaa gatgaaaaag taatttgcac tcttgatctt
     1681 agccctttgg gtaatgaaaa tttaaaaata ttatctacag aaacagcata cattgatgtc
     1741 attgaaaaaa ttttttcaca agaaaataaa agtcttgatg aaaaagtatt agagctgaaa
     1801 gaaatttata aaaactcata ggagatgaaa aatgagtaat aaagtgatta ttaataaaca
     1861 agaagtgcaa tttggcactc aagataatca aatcttttgc acaagtttag atgtggctaa
     1921 ggtttttggg aaacaacata aaaatgttct aagagatatc gaaaacattt taaatgattt
     1981 gcgagaaata gggacttcca attatctgct caattttgag ctttcattca aagtccataa
     2041 aatacaaggc tttaaaggta gagaaagaaa atacccatac tatcaactta caaaagatgg
     2101 attctttctt ttagcaatgg gctttacagg caaaaaagct ttacaattca aaatcgcttt
     2161 catcaaagct tttaatgaaa tggaaaaact tttacaaaag gagattaaga gccctaataa
     2221 atacttaaca gatttaatgg aacttattta tccaaattta ccacaaaacg attacaaggt
     2281 tagtgtgact atcacagata acccttattc caaagaagct aaaaatgtat tttctttaaa
     2341 ttatcttgta gataatcgca caccaaaaga tccaaagaag ttgcaatgag tgataaagaa
     2401 ttagaaattt ttgaactttg tgaaagactg gttgatcttt taggtgataa agaagctgtc
     2461 gcagatttac aaactttact agaaagacac cctgaaatgt ttcaaaacaa agaacaggtt
     2521 gctaacttaa taaaaaaagt tatccatgat cctgaaatta ttatcaataa tccgactcca
     2581 aaaagtgaaa aagactacat tgcagggaaa aagctaaatg aaaagaaaat gggtgaagta
     2641 ggtatccgaa aagatgaaaa tatcagtaaa atttttcacg ctaacgaaaa aagaataaaa
     2701 aacttggaat taatggcaaa aaaagatgta gtagtcgatg gtaggaacgc ccacacctcc
     2761 tacactcaag cccaaagtct tgacggacga ctggttcaaa agaacatttc atcggctacc
     2821 aataaaatta taccacaaca aaacaaatcc acaaatgatt ttaaagcaaa attagaagaa
     2881 tttagcacca aaaaaacaaa tgcagttaaa tctataaata aggagtttaa aagatgaaaa
     2941 aatattacac caacaaaaag gagttaaaca atgaataatg taaatctaat cggatactta
     3001 ggaaaagatt ttgaagtagg cactacaaat agcggaagag tttatgcaaa aaattctctt
     3061 gcaattacaa agcgatggaa aaatgaaaga ggcaatgaag aaagtagcac gacttggata
     3121 cctattgttt tatttggcaa aagtgcagaa agtgcatcaa cgcacattaa aaaaggttca
     3181 cagtttgcgt gtagtggaga attatcatcc aatcaatatc aagatgaaga tggaaatact
     3241 agaacaatgc taagcgtgat tgtatctaaa ttttactggc ttggcaaaaa agataaagat
     3301 gacactggaa cacaaaatcc acaagttcca ccaaaagagc caaatattga ttatgaaaac
     3361 acaaatatag atgaagaaac acaagtattt taagatttaa ggataaaaat gtctataaaa
     3421 aatttaagtg tagaagaatt agcacaagaa ttagaaactt caaatcatga aaagctgatt
     3481 aaagctttgt ttttatttga aaaaagttct tcaatggaag atcttaattc agatcaaata
     3541 gaaataattt tagatgaagt atatgaattt tatatcaatc ataaatccat atcttctttt
     3601 ttacaagaag atataaacca agcattagat gaagctattg ataaagagct ttgcaaaaaa
     3661 caagaaaaat catttgaaag gtaaaaaatg aaaaaaaata tctttggtgt taataaagcc
     3721 atagggaaat ctcatcccca tgaaaatggg gaaagactaa taagccttga ctataattat
     3781 acaaaggagt ataattataa ctatgagatt tgtgtaactc aatttaacca cctcttttct
     3841 gaggttaaat ctagccacag ggttgcagcc ctatggctaa ccccacaaaa ttatatccaa
     3901 aaatttaaaa aatctattct catttttact tctatattaa ttttgccttg cttttcactt
     3961 ggtgctggta ttcctgtagt tgatgtaaca gcaaatcagc aaatggctac acaaaacgct
     4021 aaacaagtgg cagaatgggc taaagaggct tcaagatgga ctgaaactgt atcacactat
     4081 caaaaacaaa tacaagcata caaagatgag ctcttatcaa aaacaggtgt aagagattcg
     4141 gtatcttttg tgaaagatat aaaacaaatt tattcagatt tcgcagaatc tgggcaaaat
     4201 attcaatcat tttacaatga tgtattaaga gatccacaaa aatttttaag tgataaaggt
     4261 aatgaaattt ttggaaaata tacgagcttt gatcgatgta attttgattt tttaagtcaa
     4321 tcagaaaaaa acatttgcaa aatgaattta atcacttatg ctgctcaagt agaaacctat
     4381 aatcaagctt caaaacaaat ggatacaatt agccaaacac tccaaaaatt gcaagataaa
     4441 ttagtaaatt ccaaagatat taaagaaagc acagatgtcg gcaatgctat ccaattagaa
     4501 gtagcaaaaa ttcaaatggt taaaaatcaa gttgatttag ctaattcaag ctatgaaaac
     4561 caaagaagaa tccaagaaga tatggctata caagaatact ctaagtcgtt tgattacaaa
     4621 ccacaaataa gcacaaaaga acttatgcaa aaagctagag agcagaataa acaatgaatg
     4681 atctttttca aactctaggc gaaagtatac agcaaatcat tgatgcaata agacaagtgg
     4741 gcacgagtga taaggttgct gagcttagtg tattgctctc cataatcatt actctagtta
     4801 ttatgtataa aggctatgaa gttttaatgg gaacaagcca aagccctatt agggaactta
     4861 cttgggatat agcaggaaaa cttcttgcca ttacttttgc tttgaatatc ggcggatggc
     4921 ttaccttggt cattaatgct atggatggaa tttatgaatg ggctgggggt ggaacacaaa
     4981 tgtataaaac attagatgaa atgtatgcga acacaacaca actagcaaac ataatttggg
     5041 ctaaatcaag tggtgttgga ggtgctattt tagccattgt agcaatgctg ctttgttatg
     5101 taggatttat aatcgctgtt gctcctacat ttgctatttt agtggttaca actttcacac
     5161 aaaccctact tgtaataacc gctcctatag tcttttggct tttgatattt aaatccacta
     5221 aaaatgtttt cacgcaatgg ataggacttt tactttcaaa tactttagtg attttacttg
     5281 taggattatt tttaaaaact ttcatggggg aaataaacgg atggatagtt tcattatcgc
     5341 aacatgtaca atctggatct gaagtattag gaacaagtat tttcttcgtc attgcttcct
     5401 tagttcttgt cattatgatt atttctgcaa aaatttatgc tgaaaaaatc gcaaatgttt
     5461 caatggaagg agctatgggc ggagcaatag gttctgcttt aaatcctgtt agtagattgg
     5521 caggttggac tgcaggaaaa actacaggaa aaactgtaaa tgcaggaaaa actggtgtaa
     5581 agttagctgc taaaggtgct tgggctggca ctaaaggtgg ttatagtttt gcaaaaaaaa
     5641 tgtatgaaag ggctagaaat gcaggctaaa ttaattttta ttttattact tggtgtttta
     5701 ttttttagtg cttgtagcac taaaaatcag ggtaaatatg atgaattttt taacaatcaa
     5761 acaggatgga ttcccatcaa tcaaaacaaa gatttaaata aaggaactat gaatgaaaaa
     5821 tgactttaat tccgcgatgg attatgaagc tagtttcaga tatttaattg acaaaagtaa
     5881 taaaagagct tggcttattg cttttgtttc tatttttata gccataattt caatcgtagc
     5941 agttgtctta cttactcctc taaaaacaat agaaccttat gtaataagag tagacaatac
     6001 tacaggaatg gttgatattt taaccatgct tgatgaaaaa gaaatttcaa gcaatgaagc
     6061 tcttgataag tattttatct ctcaatatgt aaaagctaga gaaggatatt actatgagct
     6121 tttaaaccaa gattatttac ttgctcaatt aatgagctct gaaaaagtcg caaatgaata
     6181 tagagcttgg tacgaaggtg aaaacgctag agatcaaatt ttaaaaaact ccaatgaagt
     6241 aaatgtgcaa attttaagta ttgttcttgg caatagcaat ggggttaaaa cttcaactat
     6301 aagagcaaaa attattacaa aaaatttaaa cactagaggg ttgtcagaat ccaccaaagt
     6361 gatcacatta agctatgact atattttagc taaagctagt gaggagaata gaattctaaa
     6421 ccctcttggc tttaaagtaa ctaattacag aattgatgag gagataagat gaaaaatatt
     6481 actttagcta tcctttcttt tttatttttg gctcctgctt ttgccttaaa tatcccaaaa
     6541 acttcttctt ttgataaaag aattgcttat gcggtttata atgcaaatga tgttttccaa
     6601 atcaatgcaa aaaatggcta tgtaagcgta ttagaatttg gcattgatga aaggattatt
     6661 aatactgcca caggttttgc agaaggttgg gatttaatag aaaaagataa tctcttattc
     6721 attaagccaa aagcttataa aacacaactt gtgcaacaag ataataatat gggggaaagc
     6781 caagtatcac aagaatttgt tttagatccg aatccaaaag attggaaaac aaacttaatt
     6841 gttattacaa atctaaacac ttatgttttt gatttaaaac ttgtaaatca aaataataac
     6901 actacctata aacttagttt ttcttatcca aaaaaagact tagaagcaac taaagaattt
     6961 ttagaagctc aagagcaaga gaaaatacgc acagatttaa ataaaaatac catccctaga
     7021 aattgggatt tttatatgaa agttaataaa ggaagtgaag acatagcacc gaattttgct
     7081 tatgatgatg gtgtttttac atatcttggt tttgataata ctaaaacctt tcctgctgtt
     7141 ttcatgtatg ataatggtaa agaaagtatt ttaaatactc atattaaaaa agatggcaat
     7201 tatgatgttt tagtggttca aaaaatcgcg aaacaaattc tattaagaag cggtgataaa
     7261 gtcgttggtg ttttcaatcg tggctatgca aaaaatccat taaataaaac aagagaaacc
     7321 tctaatgaaa atattcaaag agaaataaat aaaaagtagg aagcaagtat gcaagataaa
     7381 gaacaagata atttagacaa tgattttgaa aatcacacaa gtgatttgca tgaacaaaaa
     7441 aatcatctta aaaaaataca agcttacgca atttttgctg ttggcggctt actgtttatt
     7501 tttttaatgg tttatttcct gaaatcattt tcaggaaata acaacgatat agaagaagca
     7561 ccaaaagaag aaaataatga tatagctcaa agtgttaaaa caaaggaatt tgctccacca
     7621 ccttcatctg ctcaaaaaac atttgatgag ctcgtggcac aagaacaacc tacacaaact
     7681 acagctttga tgcttgaagc agaacctcca aaacctagaa ttgttaaagg cattggagtt
     7741 actgttgttg cttcatctaa taatggattt aatgggggta gcacaggaga tagaggagaa
     7801 tttggagata agccaaacac tgtatttgaa tttggacaaa atggttcagg tgctttacaa
     7861 aattctaaca atttccaaag cggtggagaa tttacaggtg aagtatttac tccgacaatt
     7921 gccaaagtta gcgaatttga tcaaaattta ctcttaccta aaggcactta tataggttgt
     7981 gccctaaaaa caagattagt aagctctatt aaaggtggta ttgcttgtat tgtttcaaat
     8041 gatgtttatt cagcaaatgg aaatacactt ttaatagaaa agggtagcac cattacagga
     8101 actttcaatg ctggacaatt agatgatggc atggatagac tttttgtgat ttggcaagaa
     8161 attagaacac caaacaatat tatcatccct gtttattctg gtgcaaccga tgaacttgga
     8221 gcaagtggaa tgcaaggatg ggtagatcat cattatttaa aacgatttgg ctctgctatt
     8281 ttattatcaa tgatagatga ttcactggct atcttagcgg atcaaattac aggcaaagat
     8341 aataaaaata attatgccaa ttacactgaa aatacaagag attctgcaaa agaaatcgca
     8401 aatacagcat tagaaaaaat gattgatatt aaacctactc tttataagaa tcacggagat
     8461 ttggtcggtg tttatgtaaa cagagatata gatttttcaa aggtttataa gcttacaagg
     8521 aaaaagaatg tcaataacgc tagataaata cactcaaaaa tatttcggag aatttttaaa
     8581 agatgataat atcaatgaaa tctgctataa cggcgataat aaaatttggg tacaaaactc
     8641 caaaggatta tgggaatctg tacaaacaga acttgatttt gagtccgcag gacattttgc
     8701 aactgcttca gcctctttta aaaaagacaa aatagatgta tcacgcccta ttctttcttg
     8761 tattttggta ggcggagagc gtatgcaaat tgttattccg cctgctacca aaagcgaaca
     8821 tatttcaatt actatcagaa aaccaagcaa aactcgcttt aaaatggaag atcatgttaa
     8881 aagtggactt ttcgaagatt taaaccctga tgataaaaat ataatcaaac caagcgatga
     8941 agaattaatc aagttatata aagaaagaga ttatcaagct tttatatcaa aagctgttag
     9001 ctatggtaaa aatatcatca tcgctggtga aactggcagt ggtaaaacca cttttatgaa
     9061 aactcttatt gatttcataa gcctcgatga tcggatcata acaatagaag atgttgaaga
     9121 aatcaaattc tacgaacaca aaaatttcgt gcaattattc tatccgagtg aagcaaaaag
     9181 cacagatttt ttaaattctg caacgctttt aaaatcttgt ctaagaatga agcctgacag
     9241 aattttactt gcagagctta gaggtgcgga aacttatgat tttatcaatg tcttagctag
     9301 tggacatggt ggaagcatta caagttgtca tgcaggaagt cctgaagaaa cattcacacg
     9361 acttgcctta atgactttgc aaaacccaca aggtcaatgc gttccttttg aaattatcca
     9421 aaaaacactt aaagatttaa ttgatattgt cgtgcatatc cacgctcatc acggaaaaag
     9481 gcgtattagt ggcatttatt ttaaagaaat agagaatatc aaaaaggatt ctaatgagtg
     9541 ataaagaatt agaaatcttt gagctttgcg aaagattatc aaagctttta ggagacaaag
     9601 aagcaatcgc tgatttaaag aagttatata caaatcaccc cgaaatgttt aaagatatgc
     9661 aagaagtttc aaacacaatt aaagaagtgg ttaaagaacc tgaattaatt attaaaaatc
     9721 ctagacctaa aaatgaaaag gattttatag cagtcaaaca tttgcaagac aaaaagcaaa
     9781 aaattggcga tattggtatt agaaatgata gtggaactaa tacaattttt cacgcaaata
     9841 tatcatcaaa tagaaatttt aaaagattgg ctaaaaaaga acaagcagtt actggtgaag
     9901 ccgtccactc ccttcacacc tcgagacctg ccgagctggg cggtaataat caagaattat
     9961 ctggtgcaaa tgcacattca gtaaccgcta acagcattat accacaacaa aacaaatccg
    10021 caaatgattt taaagcaaaa ctaaaagagt ttgacgccaa aggaaagaac catattcaaa
    10081 ccaaagaaaa ggagagataa atgcaaaata acaaaagtat tcaaattatt tttcttgcga
    10141 tttctagtgt ttttcttaca tatttactaa cgcctcttgt tttctttttt ttaaacaagg
    10201 taaaaataat gaaagcgatt gaaatttata acataaattt tacgctacaa gcaatcgcta
    10261 atggttatcc aaaaatatgg ctttctttga gtattacttt tggcatttgt tttgttgttt
    10321 tttctgtttt ggtgttatct ttaaaagcca aaaaatctca atttggtgaa gctagatttg
    10381 caaattttaa tgagattaaa aaaatgaatt tatttggcga taaaggaatt attatcggaa
    10441 aatataaagg aaaattgcta agatttggcg gtcagcaatt tgtagcttta ggagctccca
    10501 caagaagtgg taagggtgta ggtatagtaa taccaaactt attagagtgg caagaaagtg
    10561 ctgttgtgca agatattaag caagaatgtt ttgactatac aagcaaatat agaaaagaga
    10621 ttttaaaaca agaagtgtat ttgtttaatc cattttcaag acagactcat cgttataatc
    10681 ctttaactta cattgatatg agtgataaag aacattgcga tagtcaatta atggatttgg
    10741 ctaacatact ttatccactt gatggggatt ctacttcaaa attttttaat ggtttagcac
    10801 aaaatctctt tataggtctt tgttatttat ggcgtgattt gcaactcaca gatatgggta
    10861 aagaatttca aaaatctttt aatgtagatg taggaaattt taacttttac aatatcttgc
    10921 aactctcaaa aggcttttca ctcaagaatg aagaaaaaac cttaagaggt tttgatgata
    10981 catataattt cttggtctat tgtgaaatct tagatgaagc aactataagg cgtttagaaa
    11041 cttattttaa tatcaactca gatgctacta aatcaggcgt aatgagctct tttaatgctc
    11101 cgcttgtgcc atttgaaagt gaaacattaa gattaagcac agaaacaagt gattttgatt
    11161 tgcgagattt gcgtaaaaag aaaatgacaa tttatatagg tattacacct gatcaactcg
    11221 caaatgctca atttatttta aacatttttt ggtcgcaact tattttatta aacaccaaag
    11281 aattgccaca aagcaataaa gaattaaaat acacttgttt gatggttatg gatgaattta
    11341 ctgcacctag cagaattcct atttatcaat ctgcgataag ttttatggct ggatattggt
    11401 tacgctcttt gatgatttat caatctaatt cacaacttga aacacaaccg cctttaggtt
    11461 atggcaagga aggggcaaaa acccttttga ctaaccatgc ttgtcaaatt ttctatgcac
    11521 caagagagca agaagacgca gaagctatct ctaggatttt aggaaatact acttttaaaa
    11581 caagctcaag aagtattaat tcaggtggta atggtggcgg atcaagaagt attagcgaag
    11641 caagtagagc attaatgctt ccacaagaac ttagagaaat gccttttgaa aatgaactta
    11701 ttactattga tagtggtaag cccattttat gcaataaagc attctactat tcagattcat
    11761 atttcatgga taaatttaag gctgtttcaa aaagcctatc aggaataaaa aaaatccctt
    11821 cacgcaaaca attagaagat gcaatcttaa aaggagaatg caaaattaaa attcaaatta
    11881 taggagaaaa caatgaaaaa aatgtcgctt agtttagctt taatcacttc attaatggtt
    11941 ggatgttctg caccaaaagc aaagcgatta gatgatagct ctgcattatc tattaataat
    12001 tctattttgg agcacaaata cagtttcgtt ccaaaagatc cttatttaag tggatttaac
    12061 tggacttatc atattgtggt tgaaaaaaag actgtggatg atgattttat taaaaatgat
    12121 cttgttacta aaactttttt actcgcccac aattcaacaa aaattatttt agtaggtaga
    12181 gatgatttaa ttaaacaata caaacattat tttgaaaaaa atcaagttct tgcacccata
    12241 gaattacaac ctgtgagtcc tattgaacgc gattttaata aagtaaatat cttatttttc
    12301 aataaaacta acttaggaga ataaaaatga aaaagattac tttcgcaaca attttatttt
    12361 ttggagttgt atcttcttct aatgcaataa aattagatat tttaacagga gatactaaat
    12421 tagcttgtga agcgatgctt tgtcttgcaa gtcctgttaa accacctgaa tgcggtgcag
    12481 ctttggcaag atattttagc attgatgccc gaaaatgggc agatgtaatc gctaaacgca
    12541 gaagtttttt aaatttatgc cctgtcgatg cttcaagtga tcctgaaatg tataaatata
    12601 aaaatgatat tttggttcat ttggatgggg aatgttctgt atctgcatta aataaccgag
    12661 ttgaagacac tctattaaga actgaaacca tacaaaaatg ctctcatgga gatggttgta
    12721 caactgaaat tataaagcat tatggatata gaattaatcc acaacttaca aattcttgta
    12781 gacttttagc ttcatctaaa tatacagact atcatctaaa atatacttgc aatactaaat
    12841 tttatgagaa aaaagactgg gaaagaggtt atgagttaaa agaagtatca caagaaattt
    12901 ttaatgcttt gcctatctcg caaagagaac aaggagagaa gttagttcct gtaagttacg
    12961 cagagtttgt tagattgcct gctgacaaaa gaaagcaagg aggatttggc aaatattaca
    13021 gagttgatat tgctttttac caaaaaataa ttattaaaaa agattgctgg ataaatgaga
    13081 aataatgatg aatgaagaaa ttaattctaa tgaaaatagc ctttatgaat tggttaaaga
    13141 agataattca accaatatgg ttatacaaaa ttataatgaa ctatta
//
LOCUS       DARAII010000044        13067 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.044, whole genome shotgun sequence.
ACCESSION   DARAII010000044 DARAII010000000
VERSION     DARAII010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13067)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13067)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13067
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.044"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..285)
                     /locus_tag="SB143_001007"
     CDS             complement(<1..285)
                     /locus_tag="SB143_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEF9749552.1"
                     /translation="MNEEKKYQLWLDNYFFKPSFFQKCLAFIFLPLSLLYGLCAILNT
                     CFRQKIDFKKPIISVGNLSFGGNGKTPICKAIAREFEGVFIVLRGYRRKSK"
     gene            complement(285..1031)
                     /locus_tag="SB143_001008"
     CDS             complement(285..1031)
                     /locus_tag="SB143_001008"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEF9749553.1"
                     /translation="MDCEKISQTLCEFIQHKVKDSGLNGVVLGLSGGIDSALVATLCK
                     KALGENVFALLMPTKFSNQENLNDALKLCQELNLKYKIIEIQDILEAFLKQSENTDEL
                     SRGNFAARIRMSLLYDYSALKKALVVGTSNKSELLLGYGTIYGDLAYAFNPIGELYKS
                     EIYGLARYLNLNEKFIQKAPSADLWMGQSDEKDLGFSYELIDKGLKALENQDMKALEN
                     LDKKLLDMLQSRIKNNAFKRNMPEIASLNK"
     gene            1105..1701
                     /locus_tag="SB143_001009"
     CDS             1105..1701
                     /locus_tag="SB143_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEF9749554.1"
                     /translation="MQILKQACGPYETNCYILNTSKGDFIIDPGVNALSFIKQYAKKP
                     LAILNTHGHYDHVWDNARVKKEFDIPIYIHKNDEFMLQDPFGKGFEPSKADVLIENED
                     ELEISNTRFKFHFLPGHTPGCTMIELMGENLMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFRLLPGHGQETSLRAEQVHLPSWLRYF"
     gene            1713..2018
                     /locus_tag="SB143_001010"
     CDS             1713..2018
                     /locus_tag="SB143_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749555.1"
                     /translation="MNLDFVLLCFFVFLDAFALLGLLLGNKKKNQFNDKKFYKICPCK
                     QMAENGSLSTICIYSAVGGFFYSVLSIGYIGFGDLFLNLIFLFTLLSAYMGWKLKLD"
     gene            complement(2126..2905)
                     /locus_tag="SB143_001011"
     CDS             complement(2126..2905)
                     /locus_tag="SB143_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEF9749556.1"
                     /translation="METEFKGKTLVISGGTRGIGKAIVYEFAKVGANVAFTYNSNAQI
                     ADEMVEDLEKNYKIKAKAYEFNILEPETYKELFEKIDMDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSNKASWVTGHTFIVDGGTTFK"
     gene            complement(2905..3801)
                     /locus_tag="SB143_001012"
     CDS             complement(2905..3801)
                     /locus_tag="SB143_001012"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEF9749557.1"
                     /translation="MDKNIIIGAMTALITPFKNGKLDEQSYARLIQRQIDNGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVDICKGTKVKVLAGAGSNATHEAVDLAQFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIANSVDIPVLLYNVPGRTGCEICTETIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMILISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SKLTHLALEENYKEAKKINDELYNINKILFCESNPIPIKTAMYIAGLIESLEFRLPLC
                     SPSKENFVKIEEVMKKYNIKGF"
     gene            complement(3804..5045)
                     /locus_tag="SB143_001013"
     CDS             complement(3804..5045)
                     /locus_tag="SB143_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEF9749558.1"
                     /translation="MIDYSKITLKNKLDVYTFPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCSKKNLDKTL
                     ELFAELMENLSLKDEEFQPERSVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSTYYQPKNAILIVSGDIDSEEVFSGAKKHFEKIKNTKPI
                     PKIHTKEPKQDGAKRIEIKKPTQTELLAIGFKIPNFKHKDIPALNALAELLGNGKSSM
                     MNEILVDELNLVNEFYSFANDCIDENLFIFICNCNVGVKAEKVEQELWKIIDRLKKGD
                     FSSKDLQKVKNNVKSDFIFSLDTASAVSNTYGSYLARGDLKPLLEYESNIAHLCEQDL
                     VKSAKKYFDRSNSTTLILRKD"
     gene            complement(5042..6100)
                     /locus_tag="SB143_001014"
     CDS             complement(5042..6100)
                     /locus_tag="SB143_001014"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEF9749559.1"
                     /translation="MLYNFIKPLLFKLDPENAHALVEGSLRSLNATLPGSLSFFAYNY
                     IVNDDSLKQKLLGLDFNNPVGLAGGFDKNATMIRPLAALGFGFLEFGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNQGAEKIAARLSKIYPFVLPLGANIGKNKITSNDKALE
                     DYFTLFRNFKDLCDYFIVNISSPNTKNLRELQNDDFLSHLLEEARKITNKPILIKIAP
                     DMPIDSALKLCENAILKGADGFIIANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     LAKVLFGKTLLIASGGIDSGELAYERIKNGANLIQVYTALIFKGPSLVRDINKTLIEL
                     LKQDGFMHISEAVGANLK"
     gene            complement(6146..7879)
                     /locus_tag="SB143_001015"
     CDS             complement(6146..7879)
                     /locus_tag="SB143_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749560.1"
                     /translation="MHKDMTLKDVLIRFKPFYKKYKKEFAIAIFGMILTSIGTAGSFA
                     SLKPILDYIFVEKNEALLYTLPFLLVIIYILKNLGFYLQTYYLSFIGMDTLRILRFKV
                     LKNLLKLDMDFFKRNRSGELVSRCTNDINALQSIVSNIIPDFFRELLTIVGLLIVVFY
                     QSPILAFFALVVLPCAILPLVHFARKLKKYARSIQETNSDLLSRLSEIFSNIELIKAS
                     NTQNKESEKFAKQNNELCRLNLKSTRIDALTSPLMEIIGSLGVAAVIIIGGREVIHGT
                     MSVGSFFAFITALFAIYTPLKRLSSLYGRLQGAIAASERTFYLLDLEPQILNGSKNLE
                     SIARIEFKQVDFAYENPYKSVLKDINFEFNKGEILALVGTSGSGKSSIINLLMRFYDK
                     QKGEILLNDLDISEFSIESLHDRIGLVTQNIYLFNDSFAENVAYSEEPNKEKIIKALK
                     LANAYEFVQEMGGIYAEIKEHGKNLSGGQKQRIAIARALYKNPDLLIFDEATSALDNE
                     SEKAIIETIENLKKDRLVLMIAHRLSTIENADKIAVIDQGQMIAIGSNEELLQSCELY
                     QKFKNKEVDKV"
     gene            complement(7880..9262)
                     /gene="cysS"
                     /locus_tag="SB143_001016"
     CDS             complement(7880..9262)
                     /gene="cysS"
                     /locus_tag="SB143_001016"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEF9749561.1"
                     /translation="MKLMDSVLKEKIELDQDNVNIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLSLGYRVQFARNYTDIDDKILKKMSESGKSLNELVEFYIANYERDMKALNVL
                     EPDFKPRATYYIEPMLDLIHKLSKNGFTYTLEDGVYFDTSKDEDYLSLSHRNTEENVS
                     RLSNEVEKRNESDFVLWKFDENFYDSEFGKGRPGWHTECVAMIDSIFGDTLDIHAGGV
                     DLLFPHHENEAAQCRCACKRTLAKIWLHNGFVKINGEKMSKSLNNSFFLKDALKDFMG
                     EALRFYLLSSHYRAHFNYSLDDLENVKKRLDKFYRLKKRLAVGKTPDFGILNDIEIHS
                     NIAKQILEVLSDDLNISKALALLDEFITNANLELDQQSKNKELKQKIKEALSELAKIF
                     GFGFMDENLYFQWGVAKELKEKIQDQILQRNEAKKNKDFAKADQIREDLLKLGIALQD
                     TPQGTIWEKI"
     gene            complement(9262..10713)
                     /gene="murJ"
                     /locus_tag="SB143_001017"
     CDS             complement(9262..10713)
                     /gene="murJ"
                     /locus_tag="SB143_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEF9749562.1"
                     /translation="MKSLVFKNFIINALGILFSRVLGLARDVLIALFLGAGIYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMYQFSVIVFLFCLLVSFFS
                     SFFTKLFAFGFSSDTIALASPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKDAPQDTLYYFSYATVLSGVAQLILHLMVLRKNPVIRAMALSVKF
                     RRAKAKLEGFYSNFFHGVLGSSATQISSLLDTTIASFLMTGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALSFMQRALAVLSILLIVSSIVGSVFALEISKL
                     LFERGNFTHEDSIITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAFIAFKALLI
                     SALCSVLFIFLIKDESLKVIAVALSSSLSAFYLLIANIKEFGFKNFFALISFKFCFLM
                     ITGLVVFTILLYEIKPYLIEALLWIVASVKGVF"
     gene            10817..12682
                     /locus_tag="SB143_001018"
     CDS             10817..12682
                     /locus_tag="SB143_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEF9749563.1"
                     /translation="MALDEKIISYTENPSRELLSVASRTNIALNELDFHLLAFSTQYR
                     LENTEWIKIAEKDLTLFEKDEVFLKEDLQIKQEYKIEIFHQTRQDKTANTIKLIANKN
                     LTKIVAQINFNELKYHEKLAFELLQIIYKKMLKLKFLIGIRIFDFKKELIRICNKHKK
                     NTLNKTLQINVAKGVEPIQSQDEALVLLYKEKAKDYTIDEKRSGIIAVDENEVVLRYN
                     KFKQGKEGKDLNLHTLKVIDANQNKIKFNCSSLTFKTVEYEDYTEYLALKKGYVVEDQ
                     DKFDIANLLEFNNKVDFKNIGIIRAGLDKNVKINIKFISDMQDAVNSGVGIECEELNI
                     TGSVGSNTNLKATRMRVEGTTHTKSKIYAKEAYIKTHRGFAQADKLNIDLLEGGNIKA
                     KEVRIKKSLGGVIEADRIYIEQLESNNSCVFYNNVVIERFEGENNKFHTKIKKMDKDY
                     DQELLKIKNEISSLHHKISKLKQYILSNKNNVLDIEKKVLELKNQGQNIPSQYEKFLK
                     NFSIQNANLNKLQNQEKELLEYRKKIHDELLALEEDLFKAKFINKSGKWSDMNEIRFS
                     LLEPKEDIFYSSSTKESAKFIALKKIIQNNQEYIEIDKKLDYEEKDIEWLLPSKE"
     gene            12658..>13067
                     /gene="ruvA"
                     /locus_tag="SB143_001019"
     CDS             12658..>13067
                     /gene="ruvA"
                     /locus_tag="SB143_001019"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEF9749564.1"
                     /translation="MVVAIEGIITKKEPTFAIIKCASGLSYGVFISLFCAAKLETHQK
                     YELFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGASTAMAICSSLDVNSFYKAL
                     NLGDESVLKKVPGIGPKSAKRIIVELGDAKVQLE"
BASE COUNT         4629 a         2332 c         1772 g         4334 t
ORIGIN      
        1 cttgctttta cgcctatagc ctctaagcac tataaaaacg ccttcaaatt cccttgctat
       61 agccttgcaa ataggcgttt ttccatttcc tccaaagctt aaatttccta cgcttataat
      121 gggtttttta aaatcaatct tttggcgaaa acaagtattt aaaatcgcac ataaaccata
      181 aagcaaactc aaaggtaaaa aaataaaagc taaacatttt tgaaaaaagc tgggcttaaa
      241 aaaataatta tcaagccaaa gttgatactt tttttcttca ttcattattt attcaaactc
      301 gcaatttcag gcatatttct tttaaaagca ttgtttttta ttcttgattg aagcatatct
      361 aataattttt tatctaaatt ttctaatgct ttcatatctt gattttcaag cgcttttaat
      421 cctttgtcta taagctcata agaaaaaccc aagtctttct catcactttg tcccatccaa
      481 agatccgcac ttggagcttt ttgaatgaat ttttcattta aatttaaata tcttgctaat
      541 ccataaattt cacttttata aagctctcct ataggattaa aagcgtaagc taaatctcca
      601 taaatcgtcc cataacccaa aagtaattcg cttttatttg aagtaccaac cactaaagct
      661 ttttttaaag cagaataatc ataaagcaag ctcattctaa tacgtgcagc aaaatttccc
      721 ctgcttaact catctgtatt ttcactttgt tttaagaaag cctctaaaat gtcttgaatt
      781 tctatgattt tgtattttaa attcaattct tgacaaagtt ttaaagcatc gtttaaattt
      841 tcttgattag aaaattttgt aggcattaaa agcgcaaaaa cattttcacc caaagccttc
      901 ttacaaagcg tcgccaccaa agcagaatca atccccccgc taagtcctaa aacaacgcca
      961 tttaagcccg agtccttaac cttgtgctga atgaattcac ataaagtctg agaaattttt
     1021 tcacaatcca taaacttacc tttaaacaat caatgtataa ttataattca ttttaggttc
     1081 aaatttcaat aaaaaaggct aaaaatgcaa attctaaaac aagcttgcgg tccttatgag
     1141 acaaattgct atattttaaa cacctctaaa ggggatttta taatagatcc tggcgttaat
     1201 gctctaagtt ttataaagca atacgctaaa aaacctttag cgattttaaa cactcacggg
     1261 cattatgatc atgtatggga taatgctaga gtaaaaaaag aatttgacat tcctatttat
     1321 atccataaaa atgatgaatt tatgctacaa gatccttttg gaaaaggttt tgagccaagt
     1381 aaagctgatg ttttaatcga aaatgaagat gagcttgaaa tttctaacac tcggtttaaa
     1441 ttccattttc tccctgggca tacgccaggc tgtaccatga tagaacttat gggtgaaaat
     1501 ttgatgttta gcggagattt tttattttat agaagtatag gaagatggga ttttccttat
     1561 tcagatgcta atttaatgaa acaaagcttg gaaaaagtga tgacttataa agaagacttt
     1621 agacttttac ctggacatgg gcaagaaaca agccttagag ctgaacaagt gcatttacct
     1681 tcttggctta gatattttta aaggtgattt ttgtgaattt agattttgtg ttactttgct
     1741 tctttgtttt tttagatgct tttgcgcttt tgggcttgct cttaggaaat aagaaaaaaa
     1801 atcaattcaa tgataaaaaa ttttataaaa tttgtccttg caaacaaatg gcagaaaatg
     1861 gctctttaag tacgatttgt atttattctg ctgtgggtgg atttttttat agtgtattgt
     1921 ctataggtta tattggattt ggcgatttat ttttaaattt gattttctta tttacgcttt
     1981 tgagtgctta tatgggctgg aagctaaaac ttgattaaac tctgttttta taattgtttt
     2041 aaaaaattta tttttataag tgcaagtttt taagcaagca cttaaaaaat aaataatatt
     2101 ttttaagtaa aattaaattt ttatcttact taaaagtcgt tccaccatct acgatgaaag
     2161 tatgtcctgt tacccagctt gctttatttg agcaaagaaa aagacaagca ccagctagat
     2221 cttcaggctg tcccatacga tttaaaggac ttaaatttat agttgcttgt ttaacctctt
     2281 cataatttgt aaaagctctt aaagcatctg tttcaatcgg cccaccgctg actacattta
     2341 cacggatatt tttttctcca agctctgttg ctgcatatct tgccattgct tcaaccgcag
     2401 cttttgctgt gccgtgtcct gagtaatttt ctatataaac caaatttcca gtagaagaaa
     2461 ttgaaataat acttccaccc cctacttttt ccattctctt agctgcttct tgagctccta
     2521 caacaaaagc atttacagta gcggtaaaga tattgttaat tccttttggt tttaacttca
     2581 taaatttagt ataaccacct acaaccgcac gacctgaaat aatggcattt gaaataaaat
     2641 aatccactct atcaaaatcc atatcaattt tttcaaaaag ctctttatag gtttcaggtt
     2701 ctaaaatatt aaattcataa gcttttgctt tgatcttgta atttttttct aaatcctcaa
     2761 ccatttcatc agcaatttgc gcattagaat tataagtaaa agctacattt gctcccactt
     2821 ttgcaaattc atacacgata gccttgccaa ttccacgcgt tccaccgcta ataactaagg
     2881 tttttccttt aaattctgtt tccattaaaa tcctttaata ttatattttt tcatcacttc
     2941 ctctatttta acaaaatttt ctttacttgg agagcaaaga ggaagtctaa attccaaact
     3001 ttcaataagt cctgctatat acatggcagt ttttataggg atgggattgc tctcgcaaaa
     3061 taaaatttta ttgatattat aaagctcatc attaatcttt ttagcttctt tataattttc
     3121 ttccaaagcc aaatgagtaa gcttgctaat catatcaggc aacaaatttg aagtaactga
     3181 aatcacccct ttgcccccat tagaaagtat aggataattg atcgcatctt cacctgaaat
     3241 caatatcatc cttggttcat gcgcaagcaa atcaacgcat ttgtctatat ttccgcttgc
     3301 ttccttaacc ccatagatat tttcacaatc tctaaataat ttaataatag tctcagtgca
     3361 aatttcacag cctgttcttc cagggacatt gtataaaagc acaggaatat ccacactatt
     3421 tgcgatcgct ttataatgct cataaagtcc ttgctgtgtt ggtttgttat aataaggagc
     3481 cacacttaaa attccatctg ctccatgctc tttggcaaat tgagccaaat ccacagcttc
     3541 atgggtagca ttacttccag cacccgctag aactttaacc ttagttcctt tacaaatatc
     3601 tactgcaatt tcaatacaag ttctatgttc ttcatgggtt aaagtcgcgc tctctcctgt
     3661 tgtcccaaca ggaactaccg catcgatgcc attatcaatt tgtctttgta tcaatcttgc
     3721 ataactttgc tcatctaact tgccattttt aaaaggtgta atcaaagctg tcattgctcc
     3781 gataatgata tttttatcca tttttaatcc tttcttaaaa tcaatgtagt cgaatttgat
     3841 ctatcaaaat attttttagc gcttttaacc aaatcttgct cgcacaaatg ggctatattg
     3901 ctttcatatt ctaaaagagg ttttaaatcc cctctagcca aataagaacc ataagtattt
     3961 gaaaccgcac ttgctgtatc gagtgaaaag ataaaatcac tcttgacatt attttttact
     4021 ttttgcaaat ccttgctcga aaaatcgccc tttttaagtc tatctatgat cttccaaagc
     4081 tcttgttcta ctttttctgc ttttacgccc acattgcaat tacaaataaa aataaacaaa
     4141 ttctcatcta tacaatcatt tgcaaaagaa taaaactcat tgactaaatt taattcatcg
     4201 actaaaattt cattcatcat agaacttttt ccatttccta aaagttctgc taaggcattt
     4261 aaagcaggta tatccttatg tttaaaatta ggaattttaa aacctatggc aagaagttcg
     4321 gtttgagttg gttttttaat ctctatcctt ttagctccat cttgtttagg ctctttggta
     4381 tgaatttttg gaataggttt agtgtttttg attttttcaa aatgtttttt ggctccacta
     4441 aaaacctctt cgctatcaat atccccactt actatcaaaa tagcattttt aggctgataa
     4501 taagtactat gaaattcttt aatatcttct atgctccaat tttctatatc cttaaaaaag
     4561 cctatagggg tccaatgata aggatgatac ataaaagcgt gattaaaaag tctaaagtac
     4621 aaatacccta aaggattatt atccgttctc catctacgct cttctaagac cacacttctt
     4681 tcgggttgaa attcctcatc tttaaggctt aaattttcca taagctccgc aaaaagctct
     4741 aaggttttgt ctaaattttt cttagaacat ttgatataat aatgagtata atcaaaaccc
     4801 gtgctggcgt tatcaacccc gccaaagccc ttaactatct catcaaattc ccctgctttt
     4861 aaatttttag tgcttttaaa atttaaatgt tcaagcatat gagctatacc gctttttccc
     4921 atgatctcat ttcttgaacc cactttataa aaaatatcta cactgataac atcgctgttt
     4981 ttatttacag gaaaagtata aacatctagt ttatttttta gtgtaatttt actatagtct
     5041 atcattttaa atttgctccc accgcttcgc taatatgcat aaaaccatct tgttttaata
     5101 attctataag agttttatta atatctctta ccaatgaagg ccccttaaaa atcaatgctg
     5161 tataaacttg tattaaatta gctccatttt tgattcgctc ataagcaagc tcgccgctgt
     5221 ctatccctcc acttgcaata agtaaagttt ttccaaataa aaccttagca agctctttaa
     5281 agaaaatacc gcttttttca gtgatgagcc ttccgcttat gccgccaaaa gttctgttat
     5341 tatcaagaag agaataatct acacttgtat tggctatgat aaaaccatct gctcctttta
     5401 agatagcatt ttcacaaagc tttaaagcgc tatctatagg catatcagga gcgattttta
     5461 tcaaaatagg tttgttagtg atttttctag cttcttcaag aagatgactt aaaaaatcat
     5521 cattttgaag ttctcttaaa tttttagtat taggtgaaga aatattgacg ataaaataat
     5581 cacacaaatc tttaaaattt ctaaataaag taaaataatc ctccaaagct ttatcattgc
     5641 ttgtgatctt attttttcct atatttgctc ccaaaggcaa aacaaaagga taaatttttg
     5701 ataatcttgc ggcgattttt tctgctcctt gattattaaa acccattgca ttttgtatgc
     5761 tttcttgttt tacaaggcga aataaacgcg gtttttcatt tccctcttga ggctttggag
     5821 taaaggttcc aaactctaaa aaaccaaaac caagagccgc taaagggcgt atcatggtgg
     5881 catttttatc aaatcctcct gctaaaccca caggattatt aaaatcaagt cctagtaatt
     5941 tttgtttcaa gctatcatca tttacaatat aattataagc aaaaaagctc aaagagcctg
     6001 gcaaagtggc atttaaggac cttaaactgc cctccactaa ggcatgagca ttttcaggat
     6061 caagcttaaa aagtaagggt tttataaaat tataaagcat attattcctc gtttttttaa
     6121 aattttaact aaatttaact taaaactaga ctttatctac ttctttgttt ttaaatttct
     6181 gataaagttc gcaactttgc aaaagctctt cattgcttcc tatagcaatc atttgcccct
     6241 gatcaatcac tgcgatcttg tctgcatttt ctatagtgct taaacgatgg gcaatcatta
     6301 aaacaagtct atcttttttt aaattttcta tagtctcgat gatggctttt tcactttcat
     6361 tatcaagagc tgaagttgct tcatcaaaaa taagcaaatc aggattttta tacaaggctc
     6421 tagctatggc aatgcgttgt ttttgacccc cgcttaaatt tttaccatgc tcttttatct
     6481 ctgcataaat tcctcccatt tcttggacaa attcataagc attggctagt tttaaagctt
     6541 tgataatctt ttctttatta ggctcttcgc tgtaggctac attttcagca aagctatcgt
     6601 taaaaagata aatattttgt gttacaaggc ctattctatc atgcaagctt tctatgctaa
     6661 attcactgat atctagatca tttaataaaa tctcaccctt ttgcttatca taaaaacgca
     6721 ttaaaagatt gatgatagat gattttccac tcccgcttgt tccaacaagc gcaagaattt
     6781 cacccttgtt aaattcaaaa ttaatatctt ttaaaacact cttataagga ttttcataag
     6841 caaaatctac ttgtttaaat tcaatccttg ctatactttc taagttttta cttccattta
     6901 gaatttgtgg ctctaaatca agcaaataaa aagtcctctc gcttgctgct attgcgcctt
     6961 gtagtctacc ataaagcgaa gataatcttt ttaagggtgt ataaatagca aaaagtgctg
     7021 taataaaagc aaaaaaacta cccacgctca tcgtaccatg gatcacttct cttcctccga
     7081 tgataattac cgcagccact ccaagcgatc caataatctc cataagtgga ctagttagag
     7141 catcaatgcg agtggatttt aaattcaaac gacaaagctc gttgttttgt ttggcaaatt
     7201 tttcgctttc tttgttttga gtattgctcg ccttaataag ctcaatattt gaaaaaattt
     7261 cactcagtct tgaaagcaaa tcagaatttg tttcttgtat acttctagcg tattttttta
     7321 attttctagc aaaatgcacc aagggcaaaa tcgcacaagg taaaactact aaagcaaaaa
     7381 aagccaaaat aggactttga taaaatacca ctatcaataa acccacaatg gttaaaagct
     7441 ctctaaaaaa atcaggaatg atattagaaa ctatgctttg aagagcgtta atatcattag
     7501 tgcaacgact tactagctct ccgcttctgt tgcgtttaaa aaaatccata tcaagcttta
     7561 aaagattttt taaaacctta aaacgcaaaa ttcttaaagt atccattcct ataaaactta
     7621 aataataagt ttgtaaataa aaacccaaat tctttaaaat ataaataata acaagtagaa
     7681 aaggtaaggt atagagcaag gcctcatttt tttcaacaaa aatataatct aaaataggct
     7741 ttaaagatgc gaaacttcca gctgttccta tactagtaag tatcatccca aaaatagcaa
     7801 tggcaaattc tttcttgtat tttttataaa aaggcttaaa acggattaaa acatctttaa
     7861 gagtcatatc tttatgcatt taaattttct cccaaatcgt tccttgcggc gtatcttgca
     7921 aagcaatacc aagcttgagc aagtcttctc tgatctgatc tgctttggca aaatctttat
     7981 ttttcttagc ttcgtttctt tgcaaaattt gatcttgaat tttttctttc aactctttgg
     8041 cgacacccca ttgaaaatat aaattttcat ccataaaacc aaagccaaaa attttagcca
     8101 gttcgcttaa agcttctttg attttttgtt ttaattcttt atttttactt tgctgatcaa
     8161 gctctaaatt tgcattagtt ataaactcat ctaaaagcgc caaagcctta gagatattta
     8221 aatcatcact taaaacttct aagatttgct tggcgatatt gctatgaatc tctatatcat
     8281 ttaaaattcc aaaatctggg gtttttccca cagcaagtct ttttttaaga cgataaaact
     8341 tatccaagcg tttttttaca ttttctaaat catctaaaga ataattaaaa tgagctctat
     8401 aatgagaact taaaagataa aatcttaaag cctctcccat aaaatctttg agtgcatctt
     8461 ttaagaaaaa gctattgttt aaacttttgc tcatcttttc tccattgatt tttacaaagc
     8521 cattgtgaag ccaaattttt gccaaagttc ttttgcacgc acaacgacat tgtgctgcct
     8581 cattttcatg atgaggaaat aacaaatcca ctccacctgc atgtatatca agagtatcgc
     8641 caaaaataga atcaatcata gccacacatt cagtatgcca acctggtcgc ccttttccaa
     8701 attcactatc ataaaaattt tcatcgaatt tccaaagaac aaaatcactc tcatttcttt
     8761 tttcaacttc attactcagt cttgaaacat tttcttctgt gttacgatga gataagctta
     8821 gataatcctc atctttgcta gtatcaaaat acactccatc ttctaaagta taagtaaagc
     8881 catttttact aagcttatgg ataagatcta acataggttc tatataatat gtcgcacgag
     8941 gtttaaaatc aggctctaaa acatttaaag ctttcatatc tctttcgtaa tttgctatat
     9001 aaaactcaac aagctcattt aagctcttac cgctttcact catttttttt aaaattttat
     9061 cgtctatatc tgtataattt ctagcaaatt gcaccctata gcccaaagaa agtaaaactc
     9121 tacgcaacaa atcaaaacaa acactgcttc tagcatgacc caaatgcgca tcatcataca
     9181 cagtaggtcc acataaataa atattgacat tatcttgatc aagttcgatt ttttctttta
     9241 aaacgctatc cattaatttc atcaaaacac tcctttaaca ctagcaacga tccataacaa
     9301 agcctctata agataaggct tgatctcata aagcaaaatt gtaaaaacaa caagtcctgt
     9361 aatcattaaa aaacaaaatt taaaagatat taaagcaaaa aagttcttaa aaccaaattc
     9421 tttgatattg gcaataagca aataaaaagc acttaaagag cttgaaagcg ccacagctat
     9481 aacctttaaa ctctcatctt tgattaaaaa aataaaaagc acagagcata aagcactaat
     9541 aagcaaagct ttaaaggcga taaaagcggc tgttttttgt ttgaatttag cataaagcca
     9601 taaagaaaat aatttttgta agccaaaagg caaaagccct atcaaataag cgattaaaac
     9661 ataagctgtg ataatactat cttcgtgagt aaaattccct ctttcaaata aaagctttga
     9721 aatttctaaa gcaaatacag aacctacgat acttgaaaca atcaacaaaa tacttaaaac
     9781 cgctaaagct ctttgcataa aacttaaggc taaattttct tgatcgcttt ttaaatgctt
     9841 taaaatttta ggaaaagaaa cttgagttaa ggctatagca aaaagagcta aaggaagctg
     9901 aaaaacgcgg tttgcataat aaagataaga aatactaccc gtcattaaaa aactcgctat
     9961 tgtcgtatca agcaaagagc ttatttgtgt agcagaagag cctaaaactc catgaaaaaa
    10021 attgctataa aaaccctcta gtttagcctt tgctcgtcta aatttcacac ttaatgccat
    10081 agcgcgtatc acaggatttt ttcgcaacac cattaaatgc aaaatcaatt gtgccacacc
    10141 gcttaataca gtcgcataag aaaaataata aagcgtatct tgaggagcat ctttatcaac
    10201 aaaaaatgcg gctataacta tacttagatt aaacaaagct gccgaaaaag aagtgatgaa
    10261 aaatttttgt ctataattta aaatcgctcc taaaaaggta accaaaaaaa taaaaaacaa
    10321 ataccaaaaa ttaatcgcca ccaaaggaga ggctaaagct atagtatcgg aactaaaccc
    10381 aaaagcaaaa agcttggtaa aaaatgaaga aaaaaagctt actaaaagac aaaataaaaa
    10441 cactataaca ctaaattgat acatcacact cacgcaaaaa gcgccttttt tctttgcttt
    10501 gacaaagtta ggtaaaaagc tttgcccaaa cgccccttca gcgaaaattc ttctaaaaaa
    10561 ggcaggcatt tttaatgcta caaaaaaaat atcactataa attccagccc ccaaaaaaag
    10621 agcgattaaa acatcacgcg ctagacccaa aacgcgagaa aataaaattc ctaaagcatt
    10681 gataataaaa tttttaaaca ctaaactctt cataaatttt cacaaaattt caaatataaa
    10741 agctatcatt ttaactaaat ttgattaaaa attgactata atattgaatt taaattaaac
    10801 aataaagggg aaagttttgg ctttagatga gaaaatcatt tcctataccg aaaatccttc
    10861 tcgcgaactt ttatctgtag cttcaagaac taatatcgct ttaaatgaac ttgattttca
    10921 tcttttagct ttttcgacac aatatcgtct tgaaaatacc gaatggataa aaatcgctga
    10981 aaaagatctc actctttttg aaaaagatga agtattttta aaagaggatt tgcaaatcaa
    11041 acaagagtac aaaatcgaaa tttttcatca aacacgccaa gataaaaccg caaatactat
    11101 caagctgatt gctaataaaa atttaacaaa aattgtcgct caaatcaatt ttaatgagtt
    11161 aaaatatcat gaaaaattag cttttgaact tttgcaaatt atctacaaaa aaatgttaaa
    11221 gcttaagttt ttaataggca ttcgtatctt tgattttaaa aaagaactca tccgtatatg
    11281 caataaacac aagaaaaata ctttaaataa aaccttgcaa atcaatgtag ccaaaggtgt
    11341 tgaacctata caaagccaag atgaagcctt agttttgctt tataaagaaa aggctaaaga
    11401 ttatactata gatgaaaaac gctcgggtat tatagcagtt gatgaaaatg aagttgtatt
    11461 aagatataac aaattcaagc aaggcaaaga aggaaaagac ttaaatttac atactttaaa
    11521 agttatagat gctaatcaaa acaaaatcaa atttaactgc tcctcattaa catttaagac
    11581 tgtagaatac gaagattaca cagaatattt ggcgctaaaa aagggttatg tagttgaaga
    11641 tcaagataaa tttgatattg caaacttgct tgaatttaat aataaagttg attttaaaaa
    11701 tataggcata atccgcgcag gattggataa aaatgtaaaa ataaatatca aatttatatc
    11761 cgatatgcaa gatgctgtta attcaggtgt aggaatagaa tgcgaagaac tcaatatcac
    11821 aggaagcgtt ggaagcaata caaatttaaa agctacaaga atgagagttg aaggcaccac
    11881 gcacacaaaa tctaaaattt atgccaaaga agcctatata aaaacacatc gcggttttgc
    11941 tcaagcagac aaactaaaca tagatctctt agagggtggc aatataaaag ccaaggaagt
    12001 aaggattaaa aaaagcttag gtggagtgat agaagcagat agaatttata tagaacaatt
    12061 agaaagcaat aattcatgtg tgttttacaa taatgttgtc atagaacgct ttgaaggtga
    12121 aaataataaa tttcatacta aaataaaaaa aatggataaa gactacgatc aagaactttt
    12181 aaaaataaag aatgaaattt catctcttca tcataaaata agcaaactca aacaatacat
    12241 tctatcaaac aaaaacaatg ttttagatat agaaaaaaaa gtcttagagc ttaaaaatca
    12301 aggacaaaat ataccaagcc aatatgaaaa atttttaaaa aatttctcta tacaaaatgc
    12361 aaacttaaat aaacttcaaa accaagaaaa agaactttta gaatatagaa aaaaaatcca
    12421 cgatgagctt ttagcactag aagaggattt atttaaagct aaatttatca acaaaagtgg
    12481 aaaatggagc gatatgaatg aaatcagatt ttcgctttta gaacctaaag aagatatttt
    12541 ttattcttct tccactaaag aaagtgcaaa atttatagct ttgaaaaaaa tcatacaaaa
    12601 taatcaagaa tatatagaga ttgataaaaa acttgactat gaagaaaagg atatagaatg
    12661 gttgttgcca tcgaaggaat aatcacaaaa aaagaaccca cttttgctat cataaaatgc
    12721 gctagtggtt taagctatgg ggtttttatc tcactttttt gtgctgctaa gcttgaaact
    12781 catcaaaaat acgagctttt catcactcaa atcatcaaag aggattctaa caaattctat
    12841 ggttttttag ataaagatga gcaaaaaatg tttgaaatgc ttttaaaagt aaatggagtg
    12901 ggcgcaagca ctgcgatggc tatatgctca agtttggatg taaattcttt ttataaggct
    12961 ttaaatttgg gagatgagag tgtacttaaa aaagttccag gcattggtcc aaaaagcgcc
    13021 aaacgcatca tcgtagaact tggagatgcc aaagtccaac tcgaaag
//
LOCUS       DARAII010000045        13010 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.045, whole genome shotgun sequence.
ACCESSION   DARAII010000045 DARAII010000000
VERSION     DARAII010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13010
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.045"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1185
                     /gene="groL"
                     /locus_tag="SB143_001020"
     CDS             <1..1185
                     /gene="groL"
                     /locus_tag="SB143_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEF9749565.1"
                     /translation="NSDEKIGNLIADAMEKVGKDGVITVEEAKSINDELNVVEGMQFD
                     RGYLSPYFITNAEKMTVELSNPYILLFDKKIANLKDLLPVLEQIQKTGKPLLIIAEDI
                     EGEALATLVVNKLRGVLNISAVKAPGFGDRRKAMLEDIAILTGGEVISEELGRTLESA
                     TIQDLGQASSVIIDKDNTTIVNGAGEKANIDARVNQIKAQIAETSSDYDREKLQERLA
                     KLSGGVAVIKVGAATETEMKEKKDRVDDALSATKAAVEEGIVIGGGAALIKAKAKINL
                     DLKGDEAIGAAIVERALRAPLRQIAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVN
                     MLESGIIDPVKVERVALLNAVSVASMLLTTEATISEIKEDKPAMPDMSGMGGMGGMGG
                     MM"
     gene            complement(1221..1463)
                     /locus_tag="SB143_001021"
     CDS             complement(1221..1463)
                     /locus_tag="SB143_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:pantothenate symporter"
                     /protein_id="HEF9749566.1"
                     /translation="MSLTHNDLSNLCILISLLFLEYILINAKTFRQMTRFANFYGVIM
                     VLSFIVSWQIFNAYFNFLVFLILFFVSYKIWQFKKK"
     gene            complement(1454..1678)
                     /locus_tag="SB143_001022"
     CDS             complement(1454..1678)
                     /locus_tag="SB143_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749567.1"
                     /translation="MNHEKSLIYLIALCLSYTAMQAVCKYVEEQREDRGAVPIAALIR
                     LGMGYGISYANAPGVGEQTYIGRPPFGGCH"
     gene            complement(1904..3109)
                     /locus_tag="SB143_001023"
     CDS             complement(1904..3109)
                     /locus_tag="SB143_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEF9749568.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLAIFFTLWYQKLYEELVVVKGTSL
                     RENHRNIIINILNSRFVPMNESASNIAQSTGLKFAIFDKKQAIFDNLDFDFRKAKVEL
                     KGRGIYDGKVFFLDRMNTDNYFLKHTNEDNANTESGLKILIQGEDVKKDLIWIRIKVF
                     SFAIMAFCILGLIAYILVKIALKPLEDKIITLNRFIKDSTHELNTPLSVILMSIEQLE
                     NQKLEHNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLELNKQELDLKALIEERLEYFKI
                     FFEQKKISLKLNLHQASIFASKNQISKLIDNLLSNAIKYNKKGGEILIELKTGFLSIA
                     DTGCGISKPNLKHIFDRYARFNTDQGGFGIGLSLVKKICDDNDIKIICESVENQGSVF
                     ELSWSAKKI"
     gene            complement(3102..3767)
                     /locus_tag="SB143_001024"
     CDS             complement(3102..3767)
                     /locus_tag="SB143_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEF9749569.1"
                     /translation="MAARILLLEDDLSLSEIIEEFLIDEGYEVYLCTNAKEALELAYE
                     KHFDLWILDVKVPLGDGFSLLKELRACGKQTPAIFMTSLNTTEDLKEGYNAGCDDYIR
                     KPFELAELSIRIQALLKRAFSHKNEDYEDLGNGFKFSFTSQILYHFDKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWEYDEEPSELSLRAYIKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            3902..4501
                     /locus_tag="SB143_001025"
     CDS             3902..4501
                     /locus_tag="SB143_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEF9749570.1"
                     /translation="MLPKWDSSFSVHNAKIDDQHKKLFELAAKVEIVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIAYPAFEEHKKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIIAKKWLLEHILYEDMKVEKWRSSSLATDEGKDVSFEAADDSDDDKPQFYLYKCN
                     CPGKVHDVPYGIHQKIELQGHKFTCKICKQAITFFQKHS"
     gene            4515..4880
                     /locus_tag="SB143_001026"
     CDS             4515..4880
                     /locus_tag="SB143_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEF9749571.1"
                     /translation="MKQETRNYSLRMPLELKERLDNLSKNLSKPKSSIVREALEVYLN
                     EIEDFSFAVNALEELKDGDYSKASKKIDKVVENLQKESDDLGDFDFAIEALEELKDGD
                     YSKASKKIDKIVKNLKKPE"
     gene            complement(4947..5186)
                     /locus_tag="SB143_001027"
     CDS             complement(4947..5186)
                     /locus_tag="SB143_001027"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749572.1"
                     /translation="MPLFYEFAHGWNEDYLDNDINMAGREGKNDIFVDAVGLELLYIK
                     PNGFYIKLDLAKAAYKYEADGKRRDRLYTSMGFYF"
     gene            complement(5170..6711)
                     /locus_tag="SB143_001028"
     CDS             complement(5170..6711)
                     /locus_tag="SB143_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004283787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HEF9749573.1"
                     /translation="MEKPFLKSIILASCLLTRALSQQNKENAEALEQMIEISPYKNVP
                     QNENIQNTLKSKQSPLDIKMDKQDSLQEDTKKVLDKEGLVAPSSEEFRFKYKFFVDTK
                     EDGKTLTLEDLGINEVWLRESIIALKRSDLNVETLQEIVNIVSYYFQYHGYPSATAYI
                     PQQEITDSIQINIMLGKLGEYQVKNYSKHLKESAISSKLKESLQGKILRTKALEDAIY
                     KINEMSGIKASGSLVAGSEYETTDVIITIEDSKKANAMLFFGNYGSKGSGVYRAGVSG
                     ALNNLLGYGDSLNYFAQLSDEMQKSYGFTYNFFLGNLKVSPRVNKSNYELGEEYESLG
                     AYGSSLDLGVDLSYPLFINTTNSLYLTGGYVYRKLEDIYGSFGIDFNKESNAFYLGTE
                     GTIGLIPNNILSYNTQLTYGDIKPKSVFLENSPVMGEFWKFNAALNNAYYFNNKISHI
                     LNISYQKTIGDYQLDSSETATLGGAYGVRAYPNGFGEADSMILTTIGLRFNIFNPNFY
                     IAPFL"
     gene            complement(6734..7066)
                     /locus_tag="SB143_001029"
     CDS             complement(6734..7066)
                     /locus_tag="SB143_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEF9749574.1"
                     /translation="MKKILVGLKLCVGVCIANDILIKKGENLYKKCIACHGVNGDKIA
                     PGSKGNIKIGGLNKAYLIKQLQGYAAGKADNGGAKVIMYANTKNWKFTTSDIEAVSAY
                     IAQLPKVK"
     gene            complement(7111..9641)
                     /locus_tag="SB143_001030"
                     /pseudo
     CDS             complement(7111..9641)
                     /locus_tag="SB143_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021739.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(9739..>13010)
                     /locus_tag="SB143_001031"
     CDS             complement(9739..>13010)
                     /locus_tag="SB143_001031"
                     /inference="COORDINATES: protein motif:HMM:NF017658.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEF9749575.1"
                     /translation="YFTNHLSKSLRVIVNISVITSLVLAQSLTASNLPSGGKFINGTG
                     SIATNGNIMNITGDKTHNVIAWGGGFNIGKDNTVNFTTNGKNYLNLDYTNKASQILGT
                     LNGGTNNVYIVNPSGVLVGEGATINANKFGVSTIPMGIDAINTFSVDGSFSPVFNANK
                     GDVVNMGTIKANEIVLVGNKVENIKGTLQADKVDIKGDKVYLEDFGINSTHLKAEIGS
                     EGFFKYEVKDVYDAYKDDSNLVDNYEFTGTATTNGNFKEYLYIGSQSASNEEMINSWK
                     GFAKLVNEGIFGELKFKDVYLGKDIDFAGASTINPVGFGNGFVGNFYGNNHTLSNIQI
                     DVADKTYVGLFGYIKGGSVQNLTIDGLQFPKYAFSYKYLGGLAGHIENGTFSNIALDT
                     IEGFNSENSSSGGFAGEINSGTFNNISLKNLGNIGVAKYAGGFAGQINGGDFSSIILS
                     NIESIYGKNNGGGFVGYTTGNTTFDGIGLKDIRFIKSGAFTGGFAGMTQGNVIFENIV
                     LNDLEEISGSHAGGFVGGVLNNENGIASLSNIVLNNIESIKGIGFIGGFAGWINNGTF
                     ENIALNNIKNISDNNYAGGFTGYAGAGTYKNIILNNIGEISANGTASLDEKSIYAGGF
                     AGRIKSDGINFSNIVLNDIDKISASIAAGGFVGNIENGSNIANSNIYFYGLLNSSSNK
                     NYITHNENILNLSNTTDFQTFINQSKIAGLEYLTNTSTSNSHLHMINGGKIGNEKSKI
                     IFDKDNFTYNTPKISEVDPDGSGSSSSPTAPNEGELSSITLEQSDFEDEILKTIIDEI
                     LNEDYVLNIDSIDFNKFNEGDVAILLYLLKNTSDKKLKESLKQSLEFYTEFNKGGLKT
                     EFEKWYGSDESTYKTSMGKYNYIIESLANLKEYVNTILKPELKSIKNNLNRLEFLKAE
                     IKRLERVYQKAMQNDLLPYDQLEVVYKNTQEKIDAYYAEAQGLLDILKNKNKPFLDDL
                     ITKEYSFEDKYTDIQGTFAIAGSSIDANAIENLADKPILSLPENENSGDSQTTNNTDS
                     TDIVNTFSKQVKLTSTESILILPAEETQSHIKEDERERGRVCITSDNAKTNNPCIAIT
                     F"
BASE COUNT         4363 a         2275 c         1828 g         4544 t
ORIGIN      
        1 aactctgatg aaaaaatcgg aaatttaata gcagatgcta tggaaaaagt aggcaaagat
       61 ggtgttatca ctgttgaaga agcaaaatca atcaatgatg aattaaatgt agttgaaggt
      121 atgcaatttg acagaggtta tctaagccct tattttataa ccaatgcaga aaaaatgacg
      181 gtagaacttt caaatcctta catcttgctt tttgataaaa aaattgcaaa tttaaaagat
      241 ttgttaccgg ttttagaaca aattcaaaaa acagggaaac cacttttaat catcgctgaa
      301 gatatcgaag gtgaagcact tgcaacttta gttgtaaaca aactacgcgg cgtattaaat
      361 atctctgctg taaaagctcc aggttttgga gatagaagaa aagctatgct tgaagatata
      421 gcgattttaa caggtggtga agtgatctct gaagagcttg gaagaactct tgaaagcgct
      481 acaatacaag atcttggaca agcttcaagc gtaatcatcg ataaagataa cacaaccatc
      541 gtaaatggcg caggcgaaaa agcaaatatt gatgcaagag taaatcaaat caaggctcaa
      601 atagctgaaa caagctctga ttatgataga gaaaaattac aagaaagact tgctaaatta
      661 agcggtggtg ttgcagttat caaagtaggt gcggcaactg aaactgaaat gaaagagaaa
      721 aaagatcgcg ttgatgatgc tttaagtgca actaaagcag cagttgaaga aggtatagta
      781 ataggcggtg gcgcagcttt aatcaaagct aaagctaaaa tcaatcttga tttaaaaggt
      841 gatgaagcta tcggcgcggc tatagttgaa agagctttaa gagcaccttt aagacaaatc
      901 gctgaaaatg caggatttga tgcaggtgta gttgtaaaca gcgttgaaaa tgctaaggat
      961 gaaaatacag gttttgatgc tgcaaaaggc gaatatgtaa atatgcttga aagtggaatt
     1021 atcgatccag ttaaagtaga aagagtagct ttacttaatg cagtttctgt agctagtatg
     1081 cttttaacca cagaagcaac aatcagcgag atcaaagaag ataaacctgc aatgcctgat
     1141 atgagtggca tgggcggaat gggtggcatg ggcggaatga tgtaagccct actacgaata
     1201 atcagcaaat tccttgctga ttatttcttt ttaaactgcc aaattttata agatacaaaa
     1261 aataaaatca aaaaaacaag aaaattaaaa tacgcattaa aaatctgcca agatacgata
     1321 aaagacaata ccataatcac gccataaaaa tttgcaaagc gagtcatttg cctaaaagtc
     1381 ttcgcattta tcaaaatata ctctaaaaat aaaagtgaaa ttaagataca aagattgctt
     1441 aaatcattgt gtgtcaatga catcccccaa aaggtggtct tcctatgtat gtttgctctc
     1501 caacacctgg tgcattagca tacgaaatgc cataacccat accaagcctt attaaagcag
     1561 caataggcac agccccccta tcttctcttt gttcttcgac atatttacaa acagcttgca
     1621 tagctgtata agacaaacat aaagctatga gataaatcaa acttttttca tggttcattt
     1681 ctctcctttg taatttgtga aattctactt tatatttaat aaatttaata ttaattatca
     1741 aaaatttatt ttattttata agattaaata tctataataa agctttttta ataaacttat
     1801 ttttatagaa aaataaattt ttattgataa taactattat aaaatgagaa aatgtttata
     1861 gagagtttca agcaagtgga tgcaaaaatt ttattgtcct ttttcaaatc ttctttgcac
     1921 tccagcttaa ctcaaaaaca ctcccttgat tttctacaga ttcgcaaatg attttaatat
     1981 cattatcatc gcaaatcttt ttcaccaaag aaagccctat gccaaagcct ccttgatcgg
     2041 tattaaatct cgcatatcta tcaaaaatat gcttaagatt tggttttgaa attccacaac
     2101 ctgtgtctgc gatacttaaa aaacctgttt ttaactctat caaaatttcc ccaccttttt
     2161 tgttgtattt gattgcatta cttaaaagat tatctatgag tttagaaatt tggtttttag
     2221 aagcgaaaat acttgcttga tgtaaattaa gctttagact gattttcttt tgctcaaaaa
     2281 atattttaaa atattctagc ctttcttcaa tcaatgcttt taggtcaagt tcttgtttgt
     2341 taagctctaa ggtattggga aaattataaa aaacaagatc tgaatacact tgagataaac
     2401 tttttgcagc taattttatc cttgtgaatt tggtattatg ctctagtttt tgattttcaa
     2461 gttgttctat actcatcaaa atcacactta aaggggtgtt aagctcatgg gttgaatctt
     2521 tgataaaccg attaagagtg ataatcttat cctctagtgg ctttagggca atttttacta
     2581 aaatataagc tatcaaaccc aatatgcaaa aagccataat agcaaaagaa aaaaccttta
     2641 ttctaatcca aataagatcc tttttaacat cctcaccttg aattaaaatt ttcaatccac
     2701 tttcagtatt tgcattatct tcatttgtat gttttaaaaa ataattatct gtattcatac
     2761 gatcaagaaa aaatactttt ccatcgtaaa ttcccctgcc cttaagttca acctttgctt
     2821 ttctaaaatc aaaatccaaa ttatcaaaaa tagcttgttt tttatcaaaa atagcaaatt
     2881 taagtccagt actttgagca atattgctag cactttcatt cataggaaca aaacgagaat
     2941 ttaggatatt tataatgata tttctatgat tttctcttaa agaagtacct tttacaacca
     3001 ctaattcttc atataatttt tgataccata aggtaaaaaa gattgctaaa aaaatacccg
     3061 tagtagttaa ataaatcaat aaaatttgcc taatgacttt tttagccata gcaatatcct
     3121 ctaccccttt ggttgataat tttttctttt cctaatattt tgcgtaaatt tttaatatac
     3181 gctcttaaac taagctcgct aggttcttca tcatactccc aaagctcttc aaagattctt
     3241 tctgtactta aaaaattatt tttatttttt aaaagcaaag ataatagctt gatctcttta
     3301 ctgggtagag ttaaagcctt atcaaaatga taaagaattt gtgaggtaaa gctgaattta
     3361 aacccattcc ccaaatcttc ataatcttca tttttatgag aaaaagctct ctttaacaaa
     3421 gcttgaatac gaattgaaag ttctgcaagc tcaaaaggct tgcgtatata atcatcacaa
     3481 cctgcattat aaccctcttt caaatcttct gtcgtattta aagaagtcat aaaaatagct
     3541 ggagtttgtt ttccacaagc tcttaattct tttaataaag aaaatccatc acccaaagga
     3601 accttaacat ctagtatcca caaatcaaaa tgtttttcat aagcaagttc taaagcttct
     3661 ttagcattgg tgcataaata aacttcataa ccctcatcga ttaaaaattc ttctataatc
     3721 tcacttaaac ttaaatcatc ttctaaaagc agaattctag ctgccacaag acacctttct
     3781 ttgatatttc ttgaaattgt atcaaaaaat attgaaaaaa tggtttaata caaattaatt
     3841 tatatttaac ttatttttat gttataatct ttaatgcaaa taaatttttc aaggagtcaa
     3901 aatgcttcca aaatgggata gcagttttag tgtgcacaat gccaaaattg atgatcagca
     3961 taaaaaactt tttgagcttg cagcaaaggt tgaaattgtt tctgatagat cggtaagcaa
     4021 aaatgaagta aaagagcttt tggctgaatt tttcaattac atgaaagatc attttaatga
     4081 tgaagaaaaa tatatgcaac tcattgctta tccagcattt gaagaacata aaaaaattca
     4141 taaagaaatc atacaaacta tgattaatct tattaaagat atcaaatcta caaatgatct
     4201 taaggaaaaa ctttacatca tagcgaaaaa atggctttta gagcacatac tctatgaaga
     4261 catgaaggta gaaaaatgga gaagctcttc tttagcaaca gatgaaggta aagatgtcag
     4321 ctttgaagca gcagatgata gtgatgatga caagccgcaa ttttatcttt ataaatgcaa
     4381 ttgcccaggt aaagtacatg atgtccctta tggtatccat caaaaaattg aattacaagg
     4441 gcacaaattc acttgcaaaa tctgtaagca agcaattaca ttttttcaaa aacattccta
     4501 gaaaggttaa gttaatgaaa caagaaacta gaaattattc ccttagaatg cctttagaac
     4561 ttaaagaacg cttagataat ttgagtaaaa atctttccaa gcctaaatca agtatagtta
     4621 gagaagcctt agaagtctat cttaacgaaa ttgaagattt ttcttttgca gtcaatgcct
     4681 tagaagaatt aaaagacgga gattattcaa aagcaagtaa aaagatagat aaggttgtgg
     4741 aaaatcttca aaaggaatca gatgatttag gtgattttga ttttgctatc gaagccttag
     4801 aagaactaaa ggacggagat tattcaaaag caagtaaaaa gatagataaa atcgttaaaa
     4861 acctcaaaaa acctgaataa aaacttttat agaaacttta tcacaatgcg ataaagtttc
     4921 ttggctgtaa aattgattta aaagccttaa aaataaaatc ccatacttgt atagagtcta
     4981 tctcttcttt ttccatctgc ttcgtattta taagctgcct ttgctaaatc tagtttaata
     5041 taaaatccat tgggtttaat ataaagcaat tccaacccca ctgcatccac aaaaatatca
     5101 ttttttcctt ctctacccgc catattgata tcattatcta aataatcttc attccatcca
     5161 tgggcaaatt cataaaaaag gggcaatgta aaaattagga ttaaatatat taaatcttag
     5221 tccaattgtt gttaaaatca tactatctgc ctctccaaat ccattaggat aagctctaac
     5281 gccgtaagct cctcccaaag tcgcagtctc actagaatct agctgataat ctccgatagt
     5341 tttttgatag ctaatattaa gaatgtgtga aattttatta ttaaaataat aagcattatt
     5401 caaagctgca ttaaatttcc aaaattctcc catgacagga ctattttcta aaaatacact
     5461 ttttggcttt atatccccat aagtaagttg cgtgttatag ctaagaatgt tattaggaat
     5521 taaacctata gttccttcag ttcctaaata aaaggcattg ctttctttgt taaaatcaat
     5581 tccaaagctt ccataaatat cttcaagctt tctataaaca taacctccag taagatatag
     5641 agaattagtt gtgttgataa agagtggata agataaatcc acccctaaat ctaaagaact
     5701 tccataagca cctaaacttt cgtattcttc tcctaattca taattgcttt tattcactct
     5761 aggagaaact ttgagatttc ctaagaaaaa attataagta aatccataac ttttttgcat
     5821 ttcatcagaa agttgtgcaa agtaattaag agaatctcca tatcctaaga gattatttaa
     5881 agcgccactc acaccagctc tataaacacc agagcccttg cttccataat taccaaagaa
     5941 aagcatcgca tttgcttttt tggaatcttc tattgtaata atcacatctg tagtttcgta
     6001 ctcactccca gcaactaaac ttccgcttgc tttaattcct gacatttcat tgattttata
     6061 aatcgcatct tccaatgctt tagttcttaa aatttttcct tggagtgatt cttttagctt
     6121 agagctaata gcactctctt ttagatgctt agaataattt ttaacttgat attctccaag
     6181 ttttcctagc ataatattaa tttggattga atctgtgatc tcttgttgag gaatataggc
     6241 agttgccgat ggataaccat ggtattgaaa ataataagaa acgatattga caatttcttg
     6301 caaggtttct acatttaaat ccgatctttt tagagcaata atagattctc taagccatac
     6361 ttcattgatt ccaagatctt ctaaagtgag tgtttttcca tcctctttag tatccacaaa
     6421 gaatttatat ttaaagcgaa attcttcaga gcttggtgct actaatccct ctttatctaa
     6481 gactttctta gtatcctctt gtaaagaatc ttgtttatcc attttaatat ctaaagggga
     6541 ttgtttactt tttagagtat tttgaatgtt ttcgttttga gggacatttt tataagggga
     6601 aatctctatc atttgctcta aagcttctgc attttctttg ttttgttgcg aaagtgctct
     6661 tgttaaaaga caagaagcta gaatgatact ttttaaaaaa ggtttttcca taaatttcct
     6721 tgctttgtat tttttatttt actttaggca attgggcgat ataagcactc actgcttcaa
     6781 tatcggaagt ggtaaatttc caatttttcg tattagcata catgataact tttgctcccc
     6841 cattatctgc tttccctgca gcatagcctt gaagctgttt tatgagatag gctttattta
     6901 atcctccgat tttgatatta cccttgcttc caggagctat tttatctcca tttacgccat
     6961 gacaagcaat acatttttta taaagattct ctcccttttt gattaggata tcattcgcta
     7021 tgcatactcc tacacacaat tttaaaccca ctaatatttt tttcattttt tgtccttctt
     7081 ttaaaatttt ctttgttaag ttattgattt ttaatcactt tggatttctc cataaatcac
     7141 ttttccttta ttatctaaag ataaagttaa aggaacaacc cttaggtttt cttgttggag
     7201 ctgaggaatc tttttataat taagtgtttt tggattttta gaaatcctcc ctaagagttg
     7261 atttaattgg cttttattca tagcattgcc attaatacca ctaaaaccat tttgacttga
     7321 aattaatgca attttacttc ctttttcagg agctttttct ccctttttta aaagtagagt
     7381 gatttgggat tcttcagaga gattaatagg agtctctaaa ctttcaataa aaggtttatc
     7441 ttgattatta gaatgataaa ttaaactata atgttcaaag ttattaacta ctctagccct
     7501 cagagcttgc tctaaaatca aatggttatc ttttgtaagc tgcgccaaag aaggtgcagg
     7561 cagtgtgtta tcatcggctt tattatttgt atagtttgga attctaatca cactcccact
     7621 tagcacattt aaaagcgatc actcatggat agaaacatct ccaccaatat agagtgtatt
     7681 gccataagag agtgctagat tgctattggc atcaggaatt gcacttgctg caatatagat
     7741 aaaatctttt tctttatcat aagctccaat ttctaaatct tgaatactta aaagattgtg
     7801 atgtactctc ttgccaactc cacctattaa aatcaattcc gaaccttcag aaattctatc
     7861 agtattaaag cctacattat taaaaataac ttgattattt ttagattctt ccacctcacg
     7921 aataccataa atattaagca tagaagtcgc ccaataattg cttgctttaa agagattatt
     7981 ctttgcaaga ttggctgctc taatatacac actgctttct ctattaactc cctctccaga
     8041 agcttgtgct tctacattgt gatagaagac ttgattgttt tctacattca tagcctctac
     8101 tccagagcga atatcctttc ttccaaagac attatttaag ctaatcttat tgtgttttgc
     8161 atactctgga taatggatag atccttcaaa gttttcttgt gtggttgcat aaataaaaag
     8221 tggtagagaa gcttgagaat ctttaaaatc aatcacatta aaattagcct ctcctgctaa
     8281 agttcttcct gtaatgatat tgatcctatc actaggattt tgtgtgccat tgattactgt
     8341 gaggttattt ctaatcttaa tggtattatt gcttgcatcc ttgcttgcaa aagcaccata
     8401 aaacccaaaa ccgctgtgtc ttaaataaga attactcact tgtaaagggg actttaactc
     8461 gatatctaag gtattaaaat tagcctcccc atcaagtgtg tatccactaa agaaatcata
     8521 aatcccttgt actttcactt ttttacttat tctttttagc gcaggaacat cttttaagac
     8581 aatggagttt gcatttgcat cccctttatt tgtctttcct ccaaagaaat ttgctaaaaa
     8641 atagcgttat aaaaaatggg agtttttcca tccgctctta aatttaaaag aaaattatct
     8701 ataacaaggg tgtttttggt tgcatcataa gcttttttac cattcccatc aacaaaagct
     8761 cccgcgatat gaacaggagc aaaagaagaa tacaaaccgc ttggagcatg gatgttaaat
     8821 tccaccccat taagattaag tttatttttt tcaacctttc cattataggc taatcctcca
     8881 acaagatggg ttatcctttc atcaagaata aattccccta ccatatctct ataaaaagag
     8941 gcagtgtgaa tatctacttt agagcctttt tgggcaagca aagaatttcc tatcgcatca
     9001 ccaaagatag caagccctcc tacagcataa ggagctccgt ttaatttaag attataaata
     9061 ttttctactc ccatatttat ataacttcca tcaagaagtt ctaaggtatt atttttcgca
     9121 tttccttctc tagcaagccc accactaata acataattta ttttatcttt ctcttctttt
     9181 tttggaggat tttttgtttt tatgttgctt ggctctagaa aaaccgcaga gcttaattct
     9241 gcctctttaa taagaagttt attgttgata gaatctccct ttagagaact cccggccact
     9301 aaaaaaggaa ggatttttat aggatgcaag tttttatcca tagggttagc agcatgcata
     9361 ctttgcactt ccaagatttc ttctgaggaa tgattaagag ttaaaatttc aagcttagcg
     9421 ccttgtaaag actgcttagg gttaaaaact tctaaagtga tgtcgcttac aagtccttgt
     9481 ttaaatacac cataataatt agtgccattg atttgcttaa aggttttgtc atcaaaatcc
     9541 caaacttcct cattagaaaa actatgcctt ggagtttgaa atcttttatc gcctatagat
     9601 atagcttgac ttgctgcata cgatacgcta ttaaatatca aagctacgct cgcaaaagat
     9661 aaaaatattc tattttttag aaaaaatttc acctgcatta ttttccccct caacttaata
     9721 aattgaaatt atatttgatt aaaatgtgat tgctatacaa ggattattag tttttgcatt
     9781 gtcacttgtg atgcaaactc ttcctcgttc tctttcgtct tctttgatat gactttgtgt
     9841 ttcttctgca ggaagaataa gaatagactc tgtagaggta agttttactt gtttagaaaa
     9901 agtattaact atatctgtgc tatctgtgtt gtttgtagtt tggctatctc ctgaattctc
     9961 attttctgga agagataaaa taggtttatc tgccaaattt tcgatggcat tagcatcaat
    10021 actacttcct gcgatagcaa atgtcccttg aatatcagta tatttatctt caaatgaata
    10081 ttctttagta attaaatcgt ctaaaaaagg tttatttttg tttttaagaa tatccaataa
    10141 accctgtgct tcagcatagt aagcatcgat tttttcttgt gtgtttttat agacaacttc
    10201 taactgatca taaggaagta aatcattttg catagctttt tgatagactc tttctaatct
    10261 ttttatttca gcttttaaaa attccaatcg attgagattg tttttaatac tttttaattc
    10321 aggttttaaa atagtgttta catactcttt tagattggca agactctcaa tgatataatt
    10381 gtatttaccc atagaggttt tgtaagtact ttcatcactt ccataccatt tttcaaattc
    10441 tgtttttaat cctcctttgt taaattcagt atagaattct aaggattgtt ttaaagattc
    10501 ttttagcttt ttatcgcttg tattttttaa tagatataaa agaatagcca catcaccttc
    10561 attgaatttg ttaaaatcga tagaatctat atttaacaca taatcctcat ttaaaatttc
    10621 atcgatgatg gtttttaaaa tttcatcttc aaaatcactc tgttcaagag taatacttga
    10681 aagctctcct tcgtttggag ctgtaggtga agagcttgat cctgatccgt cgggatctac
    10741 ctctgatatt tttggagtat tgtaagtaaa attatcctta tcgaagatga ttttggattt
    10801 ctcatttcct attttaccac catttatcat atgaagatgg gagttgctag tggaagtatt
    10861 tgtaagatac tccaaacctg caattttgct ttgattaata aaagtttgaa aatcagttgt
    10921 atttgataga tttaggatat tttcattgtg ggtaatataa ttcttgttcg acgatgaatt
    10981 taataaccca tagaagtaaa tattagaatt ggcaatgtta ctaccattct ctatatttcc
    11041 aacaaatcca cctgcagcaa tactagcact aattttatct atgtcgttta aaacaatatt
    11101 tgaaaaattt ataccatcac tttttattct ccccgcaaat ccacctgcat aaatagattt
    11161 ttcatccaga ctagcggtac cattggcgct aatttctcct atgttattta aaataatatt
    11221 tttataagtt ccagcgcctg catatcctgt aaagccacct gcataattat tatcactaat
    11281 attttttata ttatttaaag caatattttc aaaagttcca ttgtttatcc atccggcaaa
    11341 gccacctata aaaccaatac ctttaatact ttcaatattg tttaaaacga tatttgataa
    11401 gctcgctata ccattctcat tattaagaac acctcccaca aagccacctg catgactacc
    11461 actaatctct tctaaatcat ttagaacaat attctcaaat atcacattgc cttgtgtcat
    11521 tcccgcaaaa ccacctgtaa aagctccaga tttaataaat cttatatctt ttaaaccgat
    11581 gccatcaaaa gttgtattgc ccgttgtata tcctacaaaa cccccaccat tattcttacc
    11641 ataaatactt tctatattac ttaaaataat acttgaaaaa tctccgccgt taatttgacc
    11701 agcaaagcca cctgcatatt tcgcaactcc aatgttgcct agatttttta aactgatatt
    11761 attaaaagtc ccagaattta tctctcctgc gaaaccacca gaagaactat tttcgctatt
    11821 aaagccttct atggtatcta aagcaatatt agaaaaagtt ccattttcta tatgccctgc
    11881 aagtcctcct aggtatttat aagaaaaggc atatttggga aattgcaatc catcaatagt
    11941 taaattttgc acactcccac ccttaatata accaaataat cctacataag ttttatcagc
    12001 aacatcaatt tgtatattag aaagtgtatg attattacca taaaaattac ctacaaaacc
    12061 attaccaaac cccacaggat tgattgtact agcacctgca aaatcaatat ctttgcctaa
    12121 atatacatct ttaaatttta attctccaaa tatcccctca ttgactaatt ttgcaaatcc
    12181 tttccaagaa ttaatcatct cttcattgct tgcactttga gatccaatgt aaaggtattc
    12241 tttaaaattt ccattagtag tagcagtacc agtaaactca taattatcaa ctaaatttga
    12301 atcatcttta taggcatcat atacatcttt tacctcatat ttaaaaaagc cttcactccc
    12361 aatttctgct tttaaatgag tagagttgat tccaaaatct tctaaataaa ccttatctcc
    12421 cttgatatct actttatctg cttgaagtgt tccttttata ttttctacct tgtttcctac
    12481 taaaacaatt tcattggctt taatagttcc catattaacc acatcgcctt tattggcatt
    12541 aaaaactgga gaaaaagaac catcgactga aaaagtattg attgcatcta tacccattgg
    12601 aattgtagaa actccaaatt tattggcatt gattgtagct ccttcgccta ctaatacccc
    12661 actaggattt acaatataaa cattgttagt tccaccattt aaagttccta gaatttgaga
    12721 agctttgttg gtataatcta gatttaaata gtttttgcca tttgtagtga aattaacagt
    12781 attgtctttt ccgatattaa atccaccgcc ccaagcaatc acattgtgtg ttttatctcc
    12841 tgtgatattc attatattgc catttgtagc aatacttcca gttccattga taaacttacc
    12901 tccgctaggt aaatttgatg ctgttaagct ttgagctaaa accaaacttg taattacaga
    12961 aatatttaca ataactctta aagatttgct aagatgatta gtaaagtatg
//
LOCUS       DARAII010000046        11942 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.046, whole genome shotgun sequence.
ACCESSION   DARAII010000046 DARAII010000000
VERSION     DARAII010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11942
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.046"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(417..491)
                     /locus_tag="SB143_001032"
     tRNA            complement(417..491)
                     /locus_tag="SB143_001032"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(457..459),aa:Asn,seq:gtt)
     gene            complement(573..1823)
                     /locus_tag="SB143_001033"
     CDS             complement(573..1823)
                     /locus_tag="SB143_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEF9749576.1"
                     /translation="MNRSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGIISEREFEEQTKNYNKMEPILEVRQIRRILFGGEVLARVEVNNGL
                     IEIISYDRQVYLNIIFDGKVNLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKALKKQIDKFAQGKLNDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     MMHELKTPITKGLITLEMLEDNKYKERLESIFNRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDNNIRIFMDESFFVNVDFKLFTTAIKNMIDNGIKHSENGF
                     IQIDIMDDYICFKNRGPELNNTLEYYTQAFTQGGSKQKSSFGLGLYIVNTILESHGMK
                     LDYDYEEGINLFYFRNLKSIIVKE"
     gene            complement(1820..2494)
                     /locus_tag="SB143_001034"
     CDS             complement(1820..2494)
                     /locus_tag="SB143_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEF9749577.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIISSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(2577..3995)
                     /locus_tag="SB143_001035"
     CDS             complement(2577..3995)
                     /locus_tag="SB143_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegQ family serine endoprotease"
                     /protein_id="HEF9749578.1"
                     /translation="MKKLILSLSLASALFAANINFNETSITSNRVNPAAGDVVLSYHN
                     SIRDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRRGGNDKEVVSS
                     LGSGVIISQDGYIVTNNHVVDDADTISVSLPGSDTEYKAKLIGKDPKTDLAVIKIEAN
                     NLWAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGFLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGRID
                     RGFLGVTISALQGDTKKAYKNQDGALITDIQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     SDLKNYIGTLEIGQKISLDFERDGENKRVDFILKGEKENPKAVQNDLIEGMTLRNLDP
                     RFKERLQIPKDVNGVFVESVKDKSRAKDSGFKEGDIIIGVGQSEIKNLKDLEQALRQV
                     KKKEFTKIWVYRNGFATLLILK"
     gene            4201..5100
                     /locus_tag="SB143_001036"
     CDS             4201..5100
                     /locus_tag="SB143_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HEF9749579.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARQYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSKNTGGVNLDDILKDLFGGGFGG
                     GSSRGSRFNGFSSKGFNTGFGGFGGFEEEDLDSTIELSIPFEKAVVGGEYSFNLQGET
                     IKFKIPHGIKQGEKLRIRNKGKNGRNGTRGDLIVKVKLGESEIYQREDDDLYQKVDIS
                     LKTALFGGKVTVNTLKENKKEATITIPANSKNGQKIRLKGYGVQNRKSDIYGDMYLVL
                     NVVLPNTETLDEKLIEMLKEKLS"
     gene            5117..5491
                     /locus_tag="SB143_001037"
     CDS             5117..5491
                     /locus_tag="SB143_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEF9749580.1"
                     /translation="MEHHYNEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGVNLAGVDVILKLKNQLHEFENLIDELRLELSKQQNP
                     NASSKAVVKHRNSFDLIFYEKK"
     gene            5492..7114
                     /locus_tag="SB143_001038"
     CDS             5492..7114
                     /locus_tag="SB143_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEF9749581.1"
                     /translation="MDNFLEIFLITAALAIVLNVIFKKFEIPTIIGYIATGEIISKIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLIAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIGQLLLTTLLSAVILIALLFFIGKYLVDRIFRLIIRASSQEIFIS
                     TILFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLHIVAQNWFIICVLTLLIMGLKFGIVCGFLFLYTKKRVALKTAFSIAQVGEF
                     ALAIFSLLQAKSMLDVETAQILIVVSIVTMIITPFVLNNIRKIANVVEDMTLNTNVVQ
                     QSTHSTLKNHLVIFGYGRLGQEIVQKIKNTGVPYLVLESDLNLVELGISRGENVVFAN
                     AAQEETLKIANITECAVAIVTITNEAKLEMICQVLASYPKPIDTIIHVNGSLEKMLFS
                     SIDENIRIVRSEKVIARNLVQEALECRIHKNT"
     gene            7124..7456
                     /locus_tag="SB143_001039"
     CDS             7124..7456
                     /locus_tag="SB143_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749582.1"
                     /translation="MAKIDEKTLRVKYLRALEKFANAAISALKKENFDKEKFQERMEK
                     NKKIVEKCEAVNLNSSYNKSLENFVNHCLDFSKQKEELLSLANALDKLKKGEKKEKHK
                     TYLKDYYD"
     gene            7449..8069
                     /locus_tag="SB143_001040"
     CDS             7449..8069
                     /locus_tag="SB143_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEF9749583.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRNELNLSPLSREKIMQTI
                     NTPNVDWAKELYSIDNFHHSSFKDGFEKYFIKHYEQSVVLFEGVKEILEFLKEQNCFL
                     AIATNAPQSSLSSILKKHEIIPYFDKILGVSLGIEPKPHPMMLDLLKSEAPHKISVFI
                     GDSQKDRECAKNANVPYFHAKWYQKDLQENEFSNANELKNFLEKYL"
     gene            8122..10116
                     /locus_tag="SB143_001041"
     CDS             8122..10116
                     /locus_tag="SB143_001041"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEF9749584.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWKDVLEDYRLVSDFKF
                     YYTPRRLVIFHENFASKQEDSFAEFIGAPKNVAYKDGQLSAAGQSFLQKAGISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEVLGEMIHQFLKSLNFGKSMRWGTNSFEFIRAIRSI
                     VCILDDNLVEFESYGVKSAKKTFIHRSVSYDLQEFNNAKEYFSLLEKNYIILDPLQRK
                     ERILKQFKLLESQNNIQIGEDEELLAEVIAITEYPNALLGSFEEEYLQIPSEVIITSM
                     RENQRYFAVFNEKGLSNHFIVVSNAVCEDYSKIIHGNERVLRARLSDAMFFYQNDLQS
                     GLNPEKLAKMTYLEGLGTMQDKSLREIKIAEVLCQMLNNDKIANISTAIKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYEICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQALLEKLASHYKNFD
                     MQILKDFIFERLYTFYSVNASFIKAVLSSKSTDLIHINQSVKALIELSKKANFQENFT
                     TFKRLANIANKTSHKVDESLFVEEAENKLYKAFKEKIQAHSLQEKLENLFSLKPFIDE
                     FFDKVMINAKDEKLKNNRQALIYEIYEEFLKIADLKELSL"
     gene            10113..10934
                     /locus_tag="SB143_001042"
     CDS             10113..10934
                     /locus_tag="SB143_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEF9749585.1"
                     /translation="MKAFFLFLSLALWLFGAQNFELIKGQALFLELDKKDFISLKNED
                     KILATFPHPKNQEKILAIFSLPYKNPPQNTKLTALYKNKKEEIFIKTLEGNYKSEKLS
                     VENKKVFPPKAVKERIAKEFKEANAIYSSYTPKALFDGSFNTPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAAVGTPIYAANSGVVKIAKDRYFAGKSVVIDHGFGIYSQYYHLS
                     KIEVKVGQKVKKGDFLGLSGATGRVSGPHLHFGILAGGKQVDPLDFISKFNTLFQ"
     gene            10931..11881
                     /locus_tag="SB143_001043"
     CDS             10931..11881
                     /locus_tag="SB143_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEF9749586.1"
                     /translation="MKFSEFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLDLIDKKVLKLPLELVEIGANEGYLSRDFLAALLEFRPEIFSKLSFFIIEPHEKLR
                     NLQKKTLEGVEFTHKRSLKECHFENAFFFCNELFDSFTCELIDDDKMAFIKDFKLVFE
                     PMEAKLKEKCEILNLKKGELSLELEEFFKDLDKASKKFIFASFDYGVFNPQQFSIRIY
                     QKHEVFNPFEITLKDFFGKSDLTYNVNFNQIQQLIKEHDFKLLALKKQNQALIDFGFE
                     ELLKYIKDKNLKTYENFLSQSKILFFNFDEKFHFFEFAKF"
BASE COUNT         4227 a         1873 c         1867 g         3975 t
ORIGIN      
        1 cattatattc cccttctttt ttatggttcg gattatactt attgttttat taaaaaaata
       61 aaaatgagat gttctgagtg aaattttaat ataaaattac tcttaaataa tatctttata
      121 tttaaaattc tataatatct taaaatttaa gtattttata atgcttataa ttcaagcatc
      181 acacgcaaaa atttacacca tgctccataa tgaaaataca aacataaaat aaataaattt
      241 catatttcaa atactaagaa tttatatcaa aatttgctat ttaaaagata aaaaataaat
      301 taaaaaactg atatgattat aacattgggt tttggtatga taaaatatac ttaattccat
      361 aacttaatat ttggatttat taaaaaataa aatatgattt tatagagagt tagaagtggc
      421 tccggatgta ggattcgaac ctacgaccaa tcggttaaca gccgactact ctaccgctga
      481 gctaatccgg aatatcttaa aaagtaaaat gtaattatat ttgattttta aaactttgtc
      541 aagcattttt ttaaaaaaat gcaaaaaata ttttattctt taacgataat actctttaaa
      601 tttctaaaat aaaataaatt tataccctct tcataatcat aatcaagctt cattccatga
      661 gattctaaaa tagtattgac tatgtaaagt ccaagtccaa agcttgattt ttgcttcgag
      721 cctccttggg taaaagcttg agtataatac tctaaagtgt tatttaattc aggacctcta
      781 tttttaaaac aaatataatc atccattata tcgatttgta taaagccatt ttcagaatgc
      841 ttaataccat tatcaatcat atttttaatc gcagtggtaa aaagcttgaa atctacattt
      901 acaaaaaagc tttcatccat aaaaatgcgt atgttattat catctcgcat agcaatttct
      961 ttggcttcat ccaaaacatc taaaatattg tattttttgc ggttgataaa tgctgctcct
     1021 gaagtaatct gctctatggc cgcaaattca ttgataagaa tttcaagacg gttaaatata
     1081 ctttctaatc tttctttgta tttattatcc tctagcattt caagagttat aagccctttg
     1141 gtaatcgggg ttttaagctc gtgcatcata tttcttaaga aaaattggcg tgattgattg
     1201 agcttacgaa tttgaacgat cgcttgataa aaagcctcac ttacttgaga aatttcatcc
     1261 acccccgtgc ttacatcttc tatatcatta agctttcctt gtgcaaattt atcaatttgc
     1321 ttctttaaag cttttaaagg cttcagtttt ttaaatatat aaatatagag caacacaagt
     1381 atacaaatca cggctacagc tatggcttta atgataaaat atctataggt ttgatagtct
     1441 tgatctttgt aaagatttac cttgccatca aaaatgatat ttaaatacac ttgtctatca
     1501 taagagatga tttcgatcaa gccattattg acctcgactc tagctaacac ttccccgcca
     1561 aaaagaattc tacgaatttg tctaacctct aagataggct ccattttatt gtaatttttc
     1621 gtttgttctt caaattctct ttcactaatt atccctgcaa aatttaaaag ccttgcgttg
     1681 gctattaaag aatatttggt atttaattct ctagtataat tttgctgatc gtattctata
     1741 agccacaaaa acccaagaat aacactgaca ccagcaaaaa taaaaataaa agttatggta
     1801 taaaaaatag atgaacgatt cattgagtca gcttatagcc tatacctctg atagaatgga
     1861 tatattttgg agtttttgga tcatcaccca ttttttgacg aatacggctg atgattacat
     1921 cgatgctttt attgcttgag tcttcactga ttgaagaaca attataaaca agctcttcgc
     1981 gactgacaac accgccttct tttttgatca aatagcttaa aatgtcaaat tccgcattgg
     2041 ttaaagtcag ctcttgtcct ttcattgtga tgatatgctt gtattgatca taaacaagat
     2101 ctttaacgct ttttgctatg gcgctttttg tatttgaaat gcgtcttaaa tggcttttaa
     2161 tgcgcgcttg aagttcttta ggattataag gctttggcaa ataatcatcc gcgcccaatt
     2221 ctaaagcatt aaccttatct gtaatatcat gtctagcgct tgagataata ataggcgtat
     2281 catacttttt acgaatttcc tcacacactt caagtccatc aagtcctggc aaggaaagat
     2341 ccaaaattat aagctgatat tcttttaaag caagttttga aagacctata taaggctcgt
     2401 gtgcgatatc aactttcata tcaaattttt ctaaatactc agccgtaatt tcagcaagct
     2461 ctaaatcatc ttctatcata aggatatttg tcattgcatt ccttttactg tatttaatct
     2521 tagtttttaa attctaaact aaattatata acgaaaggga aaccctttca taaaaattat
     2581 ttaagtatca acaaagttgc aaaaccatta cgataaaccc aaattttagt aaattctttt
     2641 ttcttcactt gtcttaaggc ttgttctaaa tcttttaaat ttttaatttc actttgtcct
     2701 acgcctataa tgatatcacc ctctttaaat cctgaatcct tagccctgct cttatcttta
     2761 acactttcta caaaaacccc atttacatct tttggaattt gcaaacgctc tttaaacctt
     2821 ggatctaaat ttcttaaagt cataccctcg atcaaatcat tttgaacggc tttaggattt
     2881 tctttttctc ctttaaggat aaaatcaacc cttttatttt ccccatctct ttcaaaatcg
     2941 agtgaaattt tttgacctat ctctaaagtg cctatatagt ttttaagatc gcttggactt
     3001 ttaatcactt tatcatttac cttagttacc aagtccccac gcttaagtcc tgcttcatca
     3061 gcacttgagc ccttttgtat atcggtaatt aaagcaccat cttgattttt ataagctttt
     3121 ttagtatcac cctgtaaagc agaaatagtt acacccaaaa atcctctatc aatcctaccc
     3181 ttttcaataa gctttttagc tatatctttc accatattcg aaggtattgc aaagccgatg
     3241 ccattatttc cacccccacg agaaagaatg gctgaattta ttcctactaa aaatccgcga
     3301 ctatcgacta aagcgccgcc tgaatttcca ggattgattg aagcatctgt ttggatgaaa
     3361 ttttcatatt ggtttaagcc tatattgtct ttatttaaag cagaaattat cccgcttgta
     3421 acactaaatc caacaccaaa aggatttcct aaggcaaaaa caacatctcc ttccattaaa
     3481 tcatctgaat ttgtaaaagt aatagcccaa agattgtttg cttctatttt aatcactgct
     3541 aaatccgtct ttggatcctt gcctataagc ttggctttat attctgtatc actgcctggc
     3601 aaacttacac tgatagtatc tgcatcatct actacatggt tgtttgtaac gatataacca
     3661 tcttgcgaaa taatcacacc cgagcccaaa gagcttacca cttctttatc atttcctcct
     3721 cttctttgtg gaaaatcaaa atcaaaaaat tgtttaaaat aagggtcgtt aaaaaaatca
     3781 tctaaaggac ttggacgatt ggctcttgta atggtttttg aagtagagat atttacaaca
     3841 gattttttag catctcttat cgaattatga taagaaagaa ctacatctcc agccgcagga
     3901 ttgacacgat tgcttgttat acttgtttca ttaaaattga tatttgcagc aaataaagca
     3961 cttgctaaac tcaatgataa aataagcttt ttcattttgt ttcctttttt atttatatta
     4021 ttcttaaaac atataatttg taaaatattt tacgtatttc ataagtataa aaccgaaaat
     4081 ttacaaaatt gtaaatgaaa gcttgagtga taaaaattta taaaacttga ttgacttagg
     4141 ctaaagtttt tgatataatt tctattaagt aaaacaatta tatatttttt aaggaataac
     4201 atgaatagct tatatgaaac acttggagta tctaaaaatg ctagcgcaga tgaaataaaa
     4261 aaagcctatc gtcgtttagc aagacaatat catcctgata tcaataaaga aaaaggcgct
     4321 gaagaaaaat ttaaagaaat caatgccgct tatgaaattt taagtgatga aaaaaaacgc
     4381 gcacaatacg atcaatacgg agactccatg tttggaggac aaagttttca cgatttctca
     4441 aaaaatacag gtggggtcaa tttagatgat atcttaaaag atctctttgg tggaggcttt
     4501 ggtggaggct cttctagagg aagtcgtttt aatggttttt catcaaaagg ctttaacacc
     4561 ggctttggag gttttggcgg atttgaagaa gaggatttgg attctactat agaacttagc
     4621 attccttttg aaaaagcagt ggtaggtgga gaatatagct ttaatcttca aggagaaacg
     4681 atcaaattta agattccaca tgggatcaaa caaggagaaa aacttagaat tcgtaacaag
     4741 ggtaaaaatg gccgcaatgg aacacgcggg gatttgattg ttaaagttaa attaggagaa
     4801 agtgaaatat atcaaagaga agatgatgat ttatatcaaa aagttgatat ctctttaaaa
     4861 actgccctat ttggtggaaa agtcaccgtt aatactctta aggaaaacaa aaaagaagcc
     4921 accataacca tacctgcaaa ttctaaaaac ggacaaaaaa ttcgccttaa aggctatggg
     4981 gtgcaaaatc gcaaaagtga catctatgga gatatgtatt tggtattaaa tgttgtttta
     5041 ccaaacactg aaaccttaga tgagaaatta atcgaaatgc taaaagaaaa actatcataa
     5101 aaaaaggagt aaagtcatgg aacaccatta taatgaaccc gtatatttaa taagtgtcgt
     5161 agcaaaagta ttaagcatac atccacaaac cctaagacaa tatgaaagag aaggtttgat
     5221 agaacctagt agaactgatg gaaaaataag gctctattct caaagggata tcgatcgtat
     5281 caagcttatc ttgcgtttaa cgcgcgatat gggggtaaat ttggcaggag tagatgtgat
     5341 tttaaagctt aaaaatcaac ttcatgaatt tgaaaattta atcgatgagc tacgcttaga
     5401 gcttagcaaa caacaaaatc caaatgcaag ctcaaaagca gttgtaaaac atagaaatag
     5461 ttttgattta attttttatg aaaaaaaata gatggataat tttttagaaa tttttttaat
     5521 tacagctgct ctagctatcg ttcttaatgt tattttcaag aaatttgaaa ttcctactat
     5581 tatcggttac attgctacag gagagattat ttctaaaatt tatcatctaa gtggcaaggg
     5641 tgagattaca catattgctg aatttggtat agtattttta atgtttacta tagggcttga
     5701 attttctttt aagcatttaa tagccatgaa acaagaggta tttttaaatg gctctttaca
     5761 aatgcttact tgcggctttg tttttatgtt gctagctata ggaattttag gacttggtga
     5821 taaaagcgca accatagtag gttttgctct agctctttct tcaaccgcag tggtgcttaa
     5881 aattttaaat gataatggcg atattaatga gcaatacgga agaaaagcct tagggatttt
     5941 actttttcaa gacatagctg tgattccttt gttattgctt gtggatattt tctcttcaaa
     6001 taatcaaaac ataggacaat tactccttac aactcttctt tcagcagtta tcttaatcgc
     6061 tttacttttc tttataggta aatacttagt cgataggata tttagactga ttatacgcgc
     6121 ttcctcgcaa gaaattttta tcagtactat actctttatg gtgattgggg caagcttttt
     6181 ggcaaattat tttggttttt cttattcttt aggagctttt atcgcaggag ccttgatagc
     6241 agaaactaaa tataaacata aaatcgaagc agacttaatc ccttttagag atttactctt
     6301 aggcttattt tttataaccg taggaatgca aattcagctt catatcgtag cacaaaattg
     6361 gtttattatc tgtgtcttaa ccttacttat aatgggttta aaatttggca tagtatgtgg
     6421 ttttttattt ttatatacca aaaaaagagt ggctttaaaa actgcttttt ctatcgctca
     6481 agttggagaa tttgctttgg caatcttctc gctcttgcaa gcaaaaagta tgctagatgt
     6541 tgaaactgct caaattttga ttgttgtttc tattgtaact atgattatca ccccttttgt
     6601 attaaacaat ataagaaaaa tagccaatgt agtagaagat atgactttaa acactaatgt
     6661 tgttcagcaa agcactcaca gcaccctaaa aaatcatctt gtaatctttg gatacggacg
     6721 cttaggacaa gagatagtgc aaaaaatcaa aaatactggt gttccttatt tggttttaga
     6781 aagtgattta aatttggtag aacttggcat aagtcggggt gaaaatgtcg tttttgccaa
     6841 tgctgcccaa gaagaaacac tcaagatagc caatataaca gaatgcgcag tagcaatcgt
     6901 aaccataacc aacgaagcca aactcgaaat gatttgtcag gttttagctt cttatccaaa
     6961 gcctattgat acaattatcc atgttaatgg tagtcttgaa aagatgcttt tttcaagtat
     7021 cgatgaaaac atacgcattg taagatctga aaaagtcatc gcaagaaatt tagtccaaga
     7081 ggctctagaa tgcagaattc acaaaaatac ttaaaggatg gtattggcaa aaatagatga
     7141 aaaaactcta agggttaaat atttaagagc cttggaaaaa tttgcaaatg cagctatttc
     7201 ggctttaaaa aaagaaaatt ttgataaaga gaaatttcaa gaaagaatgg aaaaaaataa
     7261 aaaaatagtt gaaaaatgcg aggcggtaaa tttaaattca agctataata aaagcttaga
     7321 aaattttgta aatcattgcc ttgatttttc aaaacaaaaa gaagaacttc taagccttgc
     7381 aaatgcttta gataaactta aaaaaggtga aaagaaagaa aaacataaaa cttatttgaa
     7441 ggattattat gattaatgta ttttttgata tggatggcac cttaatcgac agtgcaaatg
     7501 ctatatcttg tgctgtcaat gagataagaa atgaactaaa tttaagccca ctttctaggg
     7561 agaaaatcat gcaaaccatc aatactccaa atgtagactg ggcaaaagag ctttatagta
     7621 tagataattt ccatcattct agctttaaag atggttttga aaaatatttc atcaaacact
     7681 atgagcaaag cgtggtttta tttgaagggg ttaaagaaat attggaattt ttaaaagagc
     7741 aaaattgttt tttagctatc gccactaatg cgcctcaaag ctcgctttct agcatactta
     7801 aaaaacatga aatcattcct tattttgata aaattttagg tgtaagtctt ggtatagaac
     7861 ccaaacccca tcctatgatg ctagatcttt taaagtctga agcgccccac aaaataagtg
     7921 tttttatagg cgatagtcaa aaagatagag aatgtgcgaa aaatgctaat gtgccttatt
     7981 ttcatgcgaa atggtatcaa aaggatttac aagaaaatga atttagcaat gcaaacgaac
     8041 ttaaaaactt tttagagaag tatttataag ttttttaatg aaaattgagt taaaataaaa
     8101 taaattttta aaagagtgca tatgagtgaa ttattaatag aaatcggaac agaagaacta
     8161 cccgctattc ctttactaaa agaattagcc aatatagaaa aaaaatggaa agatgtttta
     8221 gaagattatc gcttggtgag tgattttaaa ttttactaca ctccgcgtcg cttggtgatt
     8281 tttcatgaaa atttcgcaag caaacaagaa gatagctttg ctgaatttat aggtgcacct
     8341 aaaaatgtcg cttataagga tggtcaatta tcagccgcag gacaaagctt tttacaaaaa
     8401 gcaggcatta gcgaaaatga gctttctttt aaagagatca aaggtaaaga agtcttgtat
     8461 catcaaaaag ccattaaagg tttgcaaagc caagaagttt taggagagat gattcatcaa
     8521 tttttaaaaa gtcttaactt tggtaaaagc atgcgttggg gtacgaattc ttttgaattt
     8581 atccgtgcaa tccgctctat agtttgcatc ctagatgata atttagtcga atttgaaagc
     8641 tatggtgtta agagtgctaa aaaaactttt atacacagaa gtgtaagcta tgacttgcaa
     8701 gaatttaata acgcaaaaga atattttagc cttttagaaa aaaattacat tatcttagat
     8761 ccactccaaa gaaaagagag aatactcaag caatttaaac tcctagaaag ccaaaacaat
     8821 atccaaatag gcgaagatga ggagcttttg gctgaagtta ttgctatcac agaataccct
     8881 aatgcacttt taggaagttt tgaagaagaa tatcttcaaa ttcctagcga agttatcatt
     8941 acttccatga gagaaaatca acgctatttt gcagtcttta atgaaaaagg tttaagtaat
     9001 cattttatcg ttgtaagcaa tgcagtgtgc gaggattact caaaaatcat tcacggtaac
     9061 gaaagagttt tgcgcgcaag acttagtgat gcaatgtttt tctatcaaaa cgatttgcaa
     9121 agtggcttaa atcctgaaaa actcgctaaa atgacttatc ttgaaggctt aggaacaatg
     9181 caagataaaa gtctaagaga gataaaaatc gctgaagttt tatgtcaaat gctaaacaat
     9241 gataaaatcg caaatataag cactgcgatc aaatacgcaa aagctgactt agcaacgcaa
     9301 atggtttatg aatttacaga tttgcaaggc attatgggaa gctattatgc acaaaaaatg
     9361 ggtctagatt atgaaatttg tcttgctata aaggagcaat acctaccaaa ttccgaacaa
     9421 gctccacttc ctagcactga attttcaagc atagttgccc ttgcaaacaa gcttgatacc
     9481 ctcataggac tttttagcat aggtaaaatt ccaagcggta caaaagatcc ttacgcctta
     9541 aggcgtgctg ctaatgggat aatcaaaatt gccctaaatt taaacaaaga atttgacatt
     9601 caagcactac tagaaaaact agcaagccat tataaaaact ttgatatgca aattttaaaa
     9661 gattttattt ttgaaagact ttataccttt tatagcgtta atgcttcttt tatcaaagcg
     9721 gttttaagct ctaaaagcac agatcttatc cacatcaatc aaagcgtaaa agcccttata
     9781 gaattaagca aaaaagctaa ttttcaagaa aatttcacta cctttaaaag actggccaat
     9841 atcgctaata aaacttcgca caaagtcgat gaaagccttt ttgttgaaga agcagaaaat
     9901 aaactttata aagcctttaa ggaaaaaatt caagcacact ctttacaaga aaaacttgaa
     9961 aatctcttct cacttaaacc ttttatagac gaattttttg ataaagtaat gatcaatgcc
    10021 aaagatgaaa aacttaaaaa taatcgccaa gcacttatct atgaaattta cgaagaattt
    10081 ctaaaaattg ccgatcttaa agagctaagc ctatgaaagc tttttttctt tttttaagtc
    10141 ttgctctttg gctctttgga gctcaaaatt tcgagcttat caaaggacaa gctttatttt
    10201 tggaactgga taaaaaagat tttatttctt tgaaaaacga agataaaatt ttagctacct
    10261 ttcctcatcc taaaaatcaa gagaaaattt tagctatatt ttcactgcct tataaaaatc
    10321 ctcctcaaaa tactaagctt accgctcttt ataaaaacaa aaaagaagaa atttttataa
    10381 aaactttgga aggcaattac aaaagtgaaa aattaagcgt agagaataaa aaagtttttc
    10441 cacctaaagc tgttaaagaa cgcattgcta aagaatttaa agaagctaat gcaatttata
    10501 gttcttatac tccaaaagct ttatttgatg gctcttttaa tacgccttta aattctttta
    10561 ttacgagtga ttttggcaaa gcaagaacct ttaatgaaaa agttgcaagc tatcatagcg
    10621 gaacagactt tagagccgct gtaggaaccc ccatctatgc ggctaattca ggtgtagtaa
    10681 aaatagcaaa agatcgctat tttgcaggaa aatcagtagt cattgatcat ggttttggca
    10741 tttactcgca gtattatcat ctttctaaaa tcgaagttaa ggtaggacaa aaggttaaaa
    10801 aaggtgattt tttggggcta agtggagcta caggaagggt tagtggacca cacttacatt
    10861 ttggtatttt agctggaggt aaacaagtag atcctttgga ttttatctct aaatttaata
    10921 cactttttca atgaaattta gcgaattttt tcacgcttgg ctgcatgaaa gttattataa
    10981 aaacgctgtt agtataggca aaaatggaga tttttttacc gcagtaagcg tgggaaatct
    11041 ttttggcact cttttagcaa agcatttttt agatcttata gataaaaaag tcttaaaact
    11101 tcccttagaa cttgtagaaa taggagccaa tgagggctat ttgagtagag attttttagc
    11161 cgctttgctt gaatttaggc ctgaaatttt ttccaagctt tcttttttta tcatagagcc
    11221 tcatgaaaaa ttaagaaatt tgcaaaaaaa gaccttagaa ggcgtggaat ttacacataa
    11281 gagaagctta aaagaatgtc attttgaaaa tgcctttttc ttttgcaatg agctttttga
    11341 tagttttact tgtgaattga tagatgatga taaaatggcc tttattaaag attttaaact
    11401 tgtttttgag cctatggagg ctaaattaaa agaaaaatgc gaaattttaa atttaaaaaa
    11461 aggcgaatta agcctagaat tggaagaatt ttttaaagat ttggataaag cttctaaaaa
    11521 atttatcttt gcaagttttg attatggcgt gtttaatccc caacaattta gcattagaat
    11581 ttatcaaaaa catgaagttt ttaatccttt tgaaatcact ttaaaagatt tttttggtaa
    11641 aagcgattta acctacaatg tcaattttaa tcaaattcaa cagcttataa aagaacatga
    11701 ttttaaactc ttagctctaa aaaaacaaaa ccaagccttg attgattttg gttttgaaga
    11761 attattaaaa tacatcaaag ataaaaatct taagacttat gaaaattttc tttcacaaag
    11821 taaaatttta ttttttaatt ttgatgaaaa atttcacttc tttgaatttg ctaaattcta
    11881 gcatgattgt tttctttatt tttcaaatca agcattgcat aactagcatc tgctatatta
    11941 gc
//
LOCUS       DARAII010000047        11380 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.047, whole genome shotgun sequence.
ACCESSION   DARAII010000047 DARAII010000000
VERSION     DARAII010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11380
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.047"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            605..1669
                     /locus_tag="SB143_001044"
     CDS             605..1669
                     /locus_tag="SB143_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEF9749587.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPKALAEV
                     NFALTRGVKNIEELDALAKKARNAGLNGVNTYFNPLKKVFEYLNFYKLHSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFNIVLKNWGGITGSK
                     GAKLPEFMNEDELKKFLEAIENSDFKNNTIRNKLIIKIIIFTGIRVSEAINIKLKDIS
                     EENELYIIRIRAKGNKYRVVMIKKELIEHLLKDVRVNYLSEDGLLFVNRNGKALTQAY
                     VSRIVEQILFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSER"
     gene            1659..3437
                     /locus_tag="SB143_001045"
     CDS             1659..3437
                     /locus_tag="SB143_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002802099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate-binding protein"
                     /protein_id="HEF9749588.1"
                     /translation="MSAETKFAIFGKYFYYDLKFVLKVYNKKQSKKYFKFVQKHKDKY
                     YFLTLVDYEFYKYLQDKNFTSKEAYLSFYAYKKRKKFTAMRVDEENFMPIFKNHLDFK
                     NYEKNFLQVKSAIAKGRSYQVNLTQSFHFDSLLDGFSLFNLLSKRQDTEFKAYIKDEG
                     REILSFSPELFFKIHKRKIITQPMKGTSARSKDLNQDKKNKLFLQKDVKNLSENVMIV
                     DLLRNDLSKLIVKNSMKTKLFKIQSYPTLHQMTSIIKGKLKKDIDYFQIFKALFPCGS
                     ITGAPKLETIKLIEELEARKRGIYCGAIGCIHKNKSKFSVAIRTLEKKQDYQYSVGSG
                     LVWDSKLEEEIKELELKTQFLMPKNFYLFETMYYKKGKILFFKEHLQRILNSALKLNF
                     NTQKLIKDFQEVLSYKSNLKEFKNFNIQALNEKLFHKNHSFFYPSIIKSHHKQAIFKL
                     ILQKDGNYTILENHIKTSDNNILLLSDKPLNSQSDSLYHKSSLRQIYDQKAFLWKENQ
                     CFDIAFFNEKNELCEGSRSNIIIKKDKVLYTPTLQSGLLNGIYRQFLLDLGLIKEKKL
                     FKEDLLNADEIYCINSVRGLQKVSVK"
     gene            3434..4012
                     /locus_tag="SB143_001046"
     CDS             3434..4012
                     /locus_tag="SB143_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEF9749589.1"
                     /translation="MKKILLIDNYDSFSYTIVFYLKELGYQCKIIKNDEFKKAKDLAR
                     FDFSHLIISPGPNSPTESKLSLKAIQYFKKDKKILGICLGHQCIGEIFGGKITPMPYP
                     MQGKISRLHLKKNAKKSLLFKGIKNKSKICLYHSLHISKMPKSCEILALNDKNIIMAI
                     KHKKYEIYGVQFHPEAILSQNGKKLLKNFMKI"
     gene            complement(4009..4869)
                     /locus_tag="SB143_001047"
     CDS             complement(4009..4869)
                     /locus_tag="SB143_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEF9749590.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYGVDWVSFYRLFCTGIV
                     LILYSLKKIKIFQFKKDELLSFLIFAFFGLLMTQYGYFKAIFYTDAGTATMIQYCAPL
                     LIMIYVCLKDKKMPKIFESMALIFIILALFLLASGGDISNLNLNLWGIFWAILGAFGV
                     AFYSLGARKIIAKYGIFFVMGWSSLIASFILFGILEFKEGLVHYDFALNLYLAQAGII
                     FIGTIGAFCLYLKGVEYIGALRASMIACIEPVAAAFMSFLFLGTRYSFLDLFAFALII
                     LSVILNAKKS"
     gene            5064..6320
                     /gene="murA"
                     /locus_tag="SB143_001048"
     CDS             5064..6320
                     /gene="murA"
                     /locus_tag="SB143_001048"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEF9749591.1"
                     /translation="MTYLEIQGSQKLQGEVIISGAKNAALPLIASSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKTDFKENTAYLDTSTLDKTVAKYDIVRKMRASILTLGPLL
                     ARFNHCEVSLPGGCAIGQRPIDLHLSALEKMGANIEIKQGYVVASGNLKGAQILFDKI
                     TVTGSENIIMAAALAKGKTKLVNVAKEPEVVQLCEVLAKAGLDIKGIGTDELEIYGTD
                     KELLDFKEFSVIPDRIEAGTYLCAGAITNSKITLKKVNAEHLGAVLAKLHQMGFETLV
                     DNDNITLFPAKEIKATEIMTSEYPGFPTDMQAQFMALALMAKGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALVAKGTSRIHRI
                     YHLDRGYEKLEEKFKALGAKITRLEE"
     gene            6317..7483
                     /locus_tag="SB143_001049"
     CDS             6317..7483
                     /locus_tag="SB143_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEF9749592.1"
                     /translation="MKNIFQTLAHLQDQIKALNEFELISLEEAKDRVLAKDLYAVKNL
                     PSFDNAALDGYAFNYADVNQALDIKGTILAGDKNTYEIYKNECFKIMTGAKMPKNADT
                     ILMIEDECIEEGKLVIKKPPKQYNAYRYKGEELKKDELLLKKGTRLNARHIALLSSQG
                     LYKIEVVRKIRIGIFSSGDELKEPWQDCDEENIYNANALPLLALFKDCATSYLGIIKD
                     DFNATKKALENANFDLLITSGGASVGEADFMEKALNELGFTPLFKGLKARPARPTKLY
                     QKDKTLVLILPGNPMAAYLSAFIFARKIIALLYGNLENPLQIQAFMGSDLKVKSGRNN
                     LILGNLEKGIFYPFNDNKFGSGMILPLIQSEFLLISEEEKVDFQKDERIMLFKL"
     gene            complement(7568..7642)
                     /locus_tag="SB143_001050"
     tRNA            complement(7568..7642)
                     /locus_tag="SB143_001050"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7608..7610),aa:Gly,seq:gcc)
     gene            complement(7713..9644)
                     /locus_tag="SB143_001051"
     CDS             complement(7713..9644)
                     /locus_tag="SB143_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEF9749593.1"
                     /translation="MALIDLIDASKKFGEKIVLNEANFSANEGEKIAIIGKNGEGKSS
                     LLKALLGTLALDSGRVVRQNGKSIAMLSQTVDFNANLSVKEAIKIELEEIYNTLKEYE
                     ASQSKLEKEPTNKEYLKQMDDLIALIDSKDAWNIEAKITRVLKEFSLLDYSDRLVCTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEDLLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVDQGKLSVFKGGYTNYLEKKTQILESLAKSHETLLKHLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPSAIKRLKLEISRAALNFTGEKIPNRKKMLFEL
                     KNVSKNLGEKALFADFSSRILQGERIAIVGKNGCGKSTFLKILLGELKQDSGEIKRGE
                     IKIGYFDQARSLVNSDKTLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     SILSGGEKNRVALALLFTEEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFENGAKINILHTLYTEYLENEKEMQEFDDYVSSLDLQEQTRMQKE
                     KSSKKLSYKENEILKNHPEKIEMLEKQISKLNSDLSNPSVYQEIGINTLYEELEQAQK
                     ELEKLESEYFEVLEKSENL"
     gene            complement(9653..10936)
                     /locus_tag="SB143_001052"
     CDS             complement(9653..10936)
                     /locus_tag="SB143_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEF9749594.1"
                     /translation="MLKTKNIFITFFVLLILCFGVIFYTLTNSYLNFLLLKQYEQKIK
                     SLDDVLKFSLLEDLNSNNIKEFAQDTRADFIILKDDFEISSVLNADLFLNLEENKIYD
                     LNSKRVLVKKFTYKDYKYMIIVYPRFLNLQNFWLKISISFGIYFMLVFILVFFMGRKL
                     AKSFKKILEFLNFINDSKPIILEKSIFKELNLLNKKLLKTKEKILKNTQKNKKQSDKI
                     SLKNTQLASVISAISHELKNPLSVIDLSLEMLKDENLKDEKLKNELLEKISRQSLKLN
                     ALTHKLNFVFNLNHEALQMQEFDLFTLCEKIVKNPGFERVILRGKSTRVKADEFLIEQ
                     VIINLLSNALKYSQKEVILIAQDQKISVLDFGKGIEKNQLKFITKKFYKIDTKSNNSF
                     GLGLFLVKKILSIHKSYLEISSTVSQGSKFSFKLH"
     gene            complement(10930..>11380)
                     /locus_tag="SB143_001053"
     CDS             complement(10930..>11380)
                     /locus_tag="SB143_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEF9749595.1"
                     /translation="QGYKEAVIFLTAKTLHQDLLEGFESGCDDYMCKPFDFNELLLRI
                     KAILKRHKREEEKLVFKDFSLDLINYEFFYKNEKLDVSNLEYELLKCFFENPNTLLTR
                     QFLSENVWKDDTTSDKTINIALTRLRNKFPKLKEHIISVRGIGYKIC"
BASE COUNT         4186 a         1690 c         1620 g         3884 t
ORIGIN      
        1 aatacttaca gacaagcaat cattataaaa gcttaataat aaatacattc ttaaaaattt
       61 taaaatttgg aaaatgtttt gatgtgtaaa ttcaaaagaa tagggtattt atttttattt
      121 tataaattat catttattat attattttga taaaaatata taatgatatg tcaatgcata
      181 ttatcttgac tatttgaaaa aaagataaat tatagttttc aaattacaaa ataaaataat
      241 catttttata cattaaattt tatggataag ttattaaaat acaaaaagta aatatgctta
      301 taatgcctat aatatagctt atatattggc ataatacttt ataggattag agtataaata
      361 taaaagtttg aaaattatag ttttcaatac aaaataatta attttatgta tttttacctt
      421 ttatcataca attatacaaa tattattaag aattatttaa tatattttat ataaggaatt
      481 taaatttatt ttttaaagtt aaaatgagct agaaaagctt ttttttacta agttgatact
      541 aaaatacctt ttttagttaa aattgattaa aaacaaaaat tataagattt taggaaaagt
      601 ttttatgaaa tatcctttag attgtgaaga aaattttgaa aagtcttttt tattttggct
      661 tgcaaaatat gttaaattta aactcaactc tctttccaat aaagaactta aaaatccaaa
      721 agccctagca gaggttaatt ttgcacttac aaggggtgtt aaaaatatag aagagcttga
      781 tgccttggct aaaaaagcaa gaaatgcggg tttaaatggg gttaatactt attttaatcc
      841 cttaaaaaaa gtttttgaat atcttaattt ttataaatta cactccttaa agcaaatcga
      901 tgaagagctt atagtggagg ttttagcaag tattactgga gctttatcgg atgcgagtaa
      961 aaaaaactac cgtattgcag tgattaattt ttttgatttt ttagataaac aaaacgaaga
     1021 ggatgaaaag gcgcatattt ttaatattgt acttaaaaat tggggaggta ttacaggaag
     1081 caagggagca aaactgcctg aattcatgaa cgaagatgag ttaaaaaaat tccttgaagc
     1141 catagaaaat tcagatttta aaaacaatac catacgcaac aagcttatta taaaaatcat
     1201 catttttaca ggaattcgtg taagtgaggc tatcaatatc aaactcaagg atattagcga
     1261 agaaaacgaa ctttacatta taagaattcg cgccaaagga aataaatacc gcgttgtgat
     1321 gataaaaaaa gaattaatcg agcatttgtt aaaggatgta agagttaatt atttaagtga
     1381 agatggctta ctttttgtca atcgcaatgg aaaagcttta acacaagctt atgtaagccg
     1441 tattgtagag caaattttat ttcgcgcagg aattcgcaag caaaaaaacg gcgctcatat
     1501 gcttcgccat acttttgcta ccctactcta taaaaaacaa aaagatttgg ttttggtgca
     1561 agaagcttta ggtcatgcaa gtttaaatac ttcaagaatt tatacacatt ttgacaatga
     1621 taaattaaag cttgctgcac aagtagcaaa ggaattaagt gagcgctgaa acaaaatttg
     1681 ccatttttgg taaatatttt tattatgact taaaatttgt tcttaaagtc tataataaaa
     1741 aacaaagtaa aaaatacttt aaatttgtgc aaaaacataa agataaatat tattttttaa
     1801 ctcttgtgga ttatgaattt tataaatact tacaagataa aaacttcact agcaaagagg
     1861 cttatttgag cttttatgct tataaaaaaa gaaaaaaatt cactgcgatg agggttgatg
     1921 aagaaaattt tatgcctatt tttaaaaatc atttagattt taaaaactat gaaaaaaact
     1981 ttttgcaagt aaaatccgct atagcaaaag gacgaagcta tcaggtcaat ctcactcaaa
     2041 gttttcattt tgatagcttg cttgatggat tttctttgtt taatctttta tccaaaagac
     2101 aagatactga atttaaagcg tatattaaag atgaaggacg cgaaattctt tccttttctc
     2161 ctgaattatt ttttaaaatc cataaaagaa aaataatcac ccagcctatg aaaggcacga
     2221 gtgcaagatc taaggattta aatcaagata agaaaaacaa actttttttg caaaaagatg
     2281 ttaaaaattt aagcgaaaat gtaatgatag tcgatctttt aagaaacgat ctttcaaaac
     2341 ttatcgttaa aaacagcatg aaaacaaagc tttttaaaat tcaaagctac cctactttac
     2401 atcaaatgac ttccattata aaaggcaagc ttaaaaaaga tattgattat tttcaaattt
     2461 tcaaagcttt atttccctgc ggttcgatca caggagctcc taaacttgaa accataaaac
     2521 ttatagaaga acttgaagca agaaaacgcg gaatttattg cggtgctata ggttgtatcc
     2581 ataaaaataa aagcaaattt agtgttgcta tacgcactct tgagaaaaaa caagattatc
     2641 aatacagcgt cggaagtggt ttggtgtggg attctaagct tgaggaagaa attaaagaat
     2701 tggagttaaa aactcaattt ttaatgccta aaaattttta tctttttgaa actatgtatt
     2761 ataaaaaggg taaaatttta ttttttaaag aacatttgca aagaatttta aattctgcct
     2821 taaaattgaa ttttaacaca caaaaactca ttaaagattt tcaagaagtg ttaagctaca
     2881 aatccaattt aaaagaattt aaaaatttca atatccaagc tttaaatgaa aaactttttc
     2941 ataaaaatca tagctttttt tatccaagca tcattaaaag tcatcacaaa caggctattt
     3001 ttaaacttat cttgcaaaaa gatggcaact atactatctt agaaaatcat atcaaaacaa
     3061 gtgataataa tatcttgctt ttaagtgata aacccttaaa ttcgcaaagc gattctttat
     3121 atcataaaag ttctttaaga caaatttatg atcaaaaagc ttttttatgg aaagaaaatc
     3181 aatgctttga tatagctttt tttaatgaaa aaaatgaatt atgcgaaggt tcaagaagta
     3241 atatcatcat taaaaaagat aaagtccttt atacccctac cctacaaagt ggacttttaa
     3301 atggaattta taggcaattt ttgcttgatt taggacttat aaaagaaaaa aaacttttta
     3361 aagaggattt gttaaatgca gatgagattt attgtatcaa ttcggttaga ggattgcaaa
     3421 aagtgagtgt aaaatgaaaa aaattttact catagataat tatgattctt tcagctatac
     3481 tatagttttt tatcttaaag aattgggcta tcaatgtaaa attataaaaa atgatgaatt
     3541 taaaaaagct aaagatttag ctcgctttga tttttctcat cttatcatct ctccaggtcc
     3601 aaattctcct actgaatcaa aattaagttt aaaagcaatt caatacttta aaaaagataa
     3661 aaaaatacta ggaatttgtt taggacatca gtgtataggc gagatttttg gtggaaaaat
     3721 cactccgatg ccctacccta tgcaaggtaa aatttcaaga ttgcatctta agaaaaatgc
     3781 taaaaaaagc ctgcttttta aaggtattaa aaataaaagt aaaatttgtt tgtatcattc
     3841 tttacatatt agcaaaatgc caaaaagctg tgaaattttg gctttaaatg ataaaaatat
     3901 catcatggca atcaagcata aaaaatatga gatttatggg gtgcaatttc accccgaagc
     3961 aattttaagc caaaatggca aaaaattact taaaaatttt atgaaaattt aacttttttt
     4021 agcatttaaa atcacgctta agataattaa agcaaaggca aaaagatcta aaaagctgta
     4081 tcttgttcct aaaaataaaa agctcataaa agcagctgct acaggctcga tacatgctat
     4141 catgcttgct cttaaagctc ctatgtattc aaccccttta agatatagac aaaaagcccc
     4201 tatagttcct ataaatatta tacctgcttg ggctaaatac aaattaagag caaaatcata
     4261 atgcactaaa ccttctttaa attcaagtat cccaaaaagt ataaaagaag cgattaaact
     4321 agaccaaccc ataacaaaga aaattccata ttttgcaatg atttttcttg cacctaaaga
     4381 ataaaaagca accccaaaag ctcctaaaat ggcccaaaaa attccccata aatttaggtt
     4441 taaattgctt atatctccac cacttgcaag caaaaataga gctagaatta taaaaattaa
     4501 agccatactt tcaaaaattt taggcatttt tttatctttt aaacatacat aaatcatgat
     4561 aagcaaagga gcacagtatt gtatcatagt agcagtaccc gcatcggtat aaaaaatagc
     4621 tttaaaatat ccatattgag tcatcaataa accaaagaaa gcaaaaatca aaaaggataa
     4681 aagctcatct tttttaaatt gaaatatttt tattttcttt aagctatata aaataagcac
     4741 tatacctgta caaaacaatc tataaaaact tacccaatct accccataat tatttttaaa
     4801 caaatactca gccaaaactc cgcttatagc ccaaaaaatt ccacccagca aaaccaaaaa
     4861 aacacccatg atatcacctt gaaaaataaa atatttatca ttacttttta aatttaaaat
     4921 aatacaataa aaatcatcaa actcggaaaa atttaagctc caaataaatc acaaatttca
     4981 aaacgaaaag cccaagcaat aaacttttac aaagtttaaa aaggtataat taagctttga
     5041 aatttaaaat aaggtttatc ataatgactt atttagaaat acaaggctcc caaaaacttc
     5101 aaggtgaagt tataataagt ggtgcaaaaa atgccgcttt acccctaatc gcttctagca
     5161 tacttgcaaa aaatgaagtt aaaataaata atgttcctaa tgttgcagac attaaaacac
     5221 tcatttcttt gcttgaaaat ttaggcgcaa aaactgactt taaagaaaat acagcatatt
     5281 tagatacatc aacacttgat aaaaccgtgg ccaaatatga tatcgtgcgt aaaatgcgtg
     5341 cttctatcct tactttagga cccttgcttg ctcgttttaa tcattgtgaa gtttcattgc
     5401 ctggaggatg tgctatagga caaagaccta tcgatttaca cctaagtgct ttagaaaaaa
     5461 tgggtgcaaa tatagaaata aaacaaggtt atgtcgtagc aagtgggaat ttaaaaggag
     5521 ctcaaattct ttttgataaa attaccgtta caggcagcga aaatatcatt atggcagcag
     5581 ctttagctaa gggaaaaact aagcttgtaa atgttgccaa agagcctgaa gtcgtgcagc
     5641 tttgtgaagt tttagccaag gctgggcttg atataaaagg cataggcaca gatgagcttg
     5701 aaatttatgg cacagataaa gaacttttgg attttaaaga atttagtgtg attcctgata
     5761 ggattgaagc gggaacttat ttgtgtgcag gagctattac aaattctaaa atcacactta
     5821 aaaaagtaaa tgccgagcat ttaggagcgg ttttagcaaa actccatcaa atgggttttg
     5881 aaactttggt agacaatgat aatatcacct tatttcctgc aaaagaaatc aaagctacgg
     5941 agatcatgac tagtgaatat cctggttttc caaccgatat gcaagcacaa tttatggctt
     6001 tagccctaat ggcaaagggt acaagcatca tcgatgaaag actttttgaa aatcgcttta
     6061 tgcatgtaag cgagctttta agaatgggtg cggatattaa attaaatggg catattgcta
     6121 ctatagtggg tggtaaagaa ttaaatgctg cagatgttat ggctacggat ttgcgtgctt
     6181 cttcggcttt gattttagca gcacttgtgg ctaagggcac aagtagaata catagaattt
     6241 atcatcttga tcgtggttat gaaaaattag aagaaaaatt taaagcctta ggcgctaaaa
     6301 tcacaaggct tgaagaatga aaaacatttt tcaaacttta gcgcatttac aagatcaaat
     6361 taaggctctt aatgagtttg aattaatcag tcttgaagaa gctaaagata gggttttggc
     6421 taaagatctc tatgctgtaa aaaatttacc tagctttgat aatgctgcgc ttgatggcta
     6481 tgcttttaat tatgcggatg taaatcaagc tttagatata aaaggtacga ttttagctgg
     6541 agataaaaac acttatgaga tctataaaaa tgagtgtttt aagatcatga caggtgcaaa
     6601 aatgcccaaa aatgccgata ctattttaat gatagaagat gagtgtatag aagaaggcaa
     6661 gcttgtcatc aaaaagccac ctaaacaata caacgcttat cgttataagg gcgaagaatt
     6721 aaaaaaagat gagcttttgc taaaaaaagg cacaaggctt aatgctagac atatcgctct
     6781 gctctcctct caagggcttt ataaaataga agttgtaaga aaaattcgta ttggaatttt
     6841 ttcaagtgga gatgagttaa aagaaccttg gcaagattgt gatgaggaaa atatctataa
     6901 tgctaatgct ttgcctttac ttgctttatt taaagattgc gctacaagtt atcttggtat
     6961 tattaaagat gattttaatg caactaaaaa agctttagaa aatgctaatt ttgatctttt
     7021 aatcacttca ggtggtgcga gtgtaggaga agctgatttt atggaaaagg ctttaaatga
     7081 attaggcttt actccacttt ttaagggttt aaaagcacgc cctgcaagac caactaagct
     7141 ttaccaaaaa gataaaactt tagtattgat tttaccagga aatcctatgg cagcttatct
     7201 ttctgctttt atctttgcta gaaaaatcat cgctttactt tacgggaatt tagaaaatcc
     7261 tttacaaatt caagctttta tggggagtga tttaaaagta aaaagtggaa gaaataatct
     7321 tatcttaggg aatttagaaa agggtatttt ttatcctttt aatgataata aatttggttc
     7381 agggatgata ctgcctctga ttcaaagcga atttttactc atcagtgaag aagaaaaagt
     7441 agattttcaa aaagatgaaa gaatcatgct ttttaaactt taatatatta agatggttat
     7501 tttaaaaagt ggatttattt taaaagatat tttagataaa tgaaaagaaa aataaatttg
     7561 tgaagtatgg agcgggaaac gagattcgaa ctcgcgaccc caaccttggc aaggttgtgc
     7621 tctacccctg agctattccc gcaatttgaa gtcaaattat aataaatttt aataattttt
     7681 gtcaataaat ttcatatttt attgataaaa atttatagat tttcactttt ttccaaaact
     7741 tcaaaatatt cgctttctaa tttttctaat tctttttgtg cttgttctag ctcttcataa
     7801 agagtgttta tgcctatttc ttgatatacg cttgggtttg aaagatcgct attgagttta
     7861 gaaatttgtt tttcaagcat ttcgattttt tcgggatgat tttttaaaat ttcattttct
     7921 ttatagctta gttttttgct acttttttct ttttgcatac gagtttgctc ttgcaaatca
     7981 agacttgaaa cataatcatc aaattcttgc atttcttttt cattttcaag atattcagta
     8041 taaagcgtat gcaaaatatt gatcttagcg ccgttctcaa aagcataaag tttggtagca
     8101 attttatcta caaaatatct atcatgagat actagcaaaa tggctccttc aaagctaagc
     8161 aagtactctt ctaaaatatt aatagtcgct atatcaagat cgtttgtagg ctcatctagg
     8221 attaaaacat catattcttc tgtaaaaagt aaagccaaag caacgcgatt tttttctccg
     8281 ccacttaaaa tggaaacgct tttatctaaa aattctttag gaaataagaa attttttaaa
     8341 tacccataaa catgcatatt ttttccgcgt acttcaaccc tgtcgcctcc attagggcag
     8401 aaaatttcaa gcaaggtttt atctgaattt acaagacttc tagcttgatc aaaataccct
     8461 attttaatct ctccacgctt gatttctcca ctatcttgct ttaattctcc taaaagtatt
     8521 tttaaaaaag tagactttcc acaaccattt ttgcctacta tagcaatgcg ttcaccttgt
     8581 aaaatacgac ttgaaaaatc tgcaaaaaga gctttttctc ctaaattttt acttacattt
     8641 ttaagctcaa aaagcatttt tttgcgatta ggaatttttt ctcctgtaaa atttaaagct
     8701 gcccttgaaa tttcaagctt taaacgcttg atggcactag gatttttttt agcttcttca
     8761 cgcattttaa aaatacgctc cttgcgccct tcatttcttt taagtcttgc tttaacacct
     8821 cttctaagcc attcttcctc gctttttaaa tgctttaaaa gtgtttcatg gcttttagct
     8881 aaactttcta aaatttgagt ttttttctct aggtaattcg tataaccacc cttaaacaca
     8941 ctaagtttac cttgatcaac ttctacacat ttatgcgcaa ttgcatcgat gaaatatcta
     9001 tcatgcgaga taaaaatcac acacattttt gaatttttta acaaatcctc taaaaagctt
     9061 gtcatataaa catcaaggtg gtttgtaggc tcatcaagca ataaaatatc aggattttta
     9121 agtaaaagta tacaaagacc tactctgcga atttcaccac cgcttaaagt gcaaaccaaa
     9181 cgatcagagt aatctaatag gctgaattct tttaaaacac gcgtgatttt agcttcgata
     9241 ttccaagcat ctttgctatc gattaaagca attaaatcat ccatctgttt taaatactct
     9301 ttgtttgtag gctctttttc gagtttgctt tgcgatgctt catattcttt taaagtatta
     9361 taaatttctt caagttcgat ttttatggct tctttaacgc ttaaatttgc gttaaaatca
     9421 acggtttgcg aaagcatggc tatacttttt ccattttgcc ttaccactct gccgctatct
     9481 agagctagag tgcctaaaag tgcttttaaa agacttgatt ttccttctcc attttttcct
     9541 atgatggcta ttttttcgcc ttcattagcg ctaaaatttg cctcatttaa aacaattttt
     9601 tccccaaatt tttttgaagc gtcaattaaa tcaataagtg ccattttttt ccttaatgaa
     9661 gtttaaaact gaatttagaa ccctgcgata cagtgctaga aatttctaaa tagcttttat
     9721 gtatgcttaa aatttttttt accaaaaaaa gcccaagtcc aaaagaatta ttgctcttag
     9781 tatcaatttt ataaaatttt ttcgtaataa attttaattg attcttttct atacccttgc
     9841 caaaatccaa aacactaatc ttttgatctt gcgcaatcaa aataacctct ttttggctgt
     9901 attttagagc attagaaagt aagttaataa tcacttgctc gattaaaaac tcatccgctt
     9961 ttactctagt gctttttccg cgtaaaatca ctctttcaaa acctgggttt ttaacaattt
    10021 tttcacacaa agtaaaaaga tcaaattctt gcatttgcaa ggcttcgtgg ttgagattaa
    10081 aaacaaaatt aagcttatgt gttaaagcat tcaactttag gctttggcgt gaaatttttt
    10141 ctagtaattc gtttttgagt ttttcatctt ttaaattctc atccttaagc atttctaagc
    10201 taagatcaat cacacttaaa ggatttttaa gctcatgaga gatagcagaa ataacacttg
    10261 ctaattgagt atttttaaga gaaatcttat cactttgttt tttgtttttt tgagtatttt
    10321 ttaagatttt ttcctttgtt tttaaaagtt ttttgtttag taaatttagc tctttaaaaa
    10381 tactcttttc taaaataatg ggttttgaat cgttgataaa atttaaaaat tctaaaattt
    10441 ttttaaaact ttttgctagt tttcttccca taaaaaatac taaaataaaa acaagcataa
    10501 aataaatccc aaaacttatg ctgattttta gccaaaaatt ttgcaaattt aaaaatcttg
    10561 gataaacaat gatcatatat ttatagtctt tataggtaaa tttttttaca agaactcttt
    10621 ttgaatttaa atcataaatt ttgttttctt ctaaatttaa aaataaatcc gcatttaaaa
    10681 ccgaagaaat ctcaaaatca tctttcaaaa taataaaatc cgcccttgta tcttgtgcaa
    10741 attctttgat attgttagaa tttaaatctt ctaaaagaga aaattttaaa acatcatcaa
    10801 ggcttttgat tttttgttcg tattgtttta agagtaaaaa attcaaataa gaatttgtaa
    10861 gcgtataaaa tatcacacca aaacacaaaa tcaacaaaac aaaaaaagtt ataaaaatat
    10921 ttttagtttt caacatatct tataaccaat gcccctaacg cttataatat gctctttaag
    10981 ctttggaaat ttgtttctta gtcttgttaa tgctatattg atcgtcttgt cacttgtggt
    11041 atcatctttc catacatttt cacttaaaaa ttgtcgtgtc aataaagtat tgggattttc
    11101 aaaaaaacat tttaaaagct catattccaa atttgaaaca tctaatttct cattcttgta
    11161 gaaaaattca taattgatca aatccaaaga aaaatcttta aaaactagct tttcttcttc
    11221 tcttttgtgg cgttttaaaa tagctttaat acgaagtaac aattcattaa aatcaaaagg
    11281 tttgcacata taatcatcgc agccactctc aaaaccttca agtaaatctt gatgcaaggt
    11341 tttagcggtt agaaaaatca ccgcttcttt ataaccttgc
//
LOCUS       DARAII010000048        11282 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.048, whole genome shotgun sequence.
ACCESSION   DARAII010000048 DARAII010000000
VERSION     DARAII010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11282
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.048"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..989)
                     /locus_tag="SB143_001054"
     CDS             complement(<1..989)
                     /locus_tag="SB143_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749596.1"
                     /translation="MKKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITIVPKFYSPMDDDLVTELKREFPHLLFSPYISTQVV
                     AKADNRFEGGVLFGVNFNDEVKINEVVAKALKDENLSGFDILVGSVLADELNLHKNDK
                     LSLIFSNLSPSGFSLVPQAKRFDVKARFASGLIFYDKAYMYTDVNALRKVLGISNQQS
                     YDGVHVYSENAFKDVEKLKSYLKSDYAVVGWWEQNQNFFSALKLEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRTEIALLLALGASKLEVKKSFFALGMLIGGGGMIIG"
     gene            complement(986..3574)
                     /gene="secA"
                     /locus_tag="SB143_001055"
     CDS             complement(986..3574)
                     /gene="secA"
                     /locus_tag="SB143_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEF9749597.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYLKRVAQINALESKYQNLSDDELK
                     AEFGKFKEQILSGEKKESDILNDVFAIVREVGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVILS
                     SQNSDLEHKKAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHHFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQRGEAVLPPAKPEGDFIVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYEKLAGMTGTAQTEA
                     TEFSQIYSLDVVSIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKNIMERLGIQEGEHIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDEEYDIKTKISQNIAEYSAYVMNDFMIEESGVDLNFENLKAKILNECSIE
                     LKQSDFENLSLIEMQEKLSEILEKSYDEKMSKLDSKQLHHIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVKFSQEEAQ
                     NLEEKANQENEALFEKSVEMGASEDNLGEAEFKKAPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3683..4192
                     /gene="lolA"
                     /locus_tag="SB143_001056"
     CDS             3683..4192
                     /gene="lolA"
                     /locus_tag="SB143_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEF9749598.1"
                     /translation="MKKIFCLFFFFLSHILAIDLNFNTYSSNFTQSVKSKDSTLSYSG
                     HFILSQEQAYWSYDTPSKKEIYINKNQIILVEHDLEQVVFSHLDNIPNLNEIFKKAKH
                     LNDNQLIAKYENINYTITLKDNEIQSIAYKDEFENDILITLNHQIKNPTINPEVFKPK
                     FPNYYDMVR"
     gene            complement(4195..4893)
                     /locus_tag="SB143_001057"
     CDS             complement(4195..4893)
                     /locus_tag="SB143_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749599.1"
                     /translation="MKKIFLLAFLSLSLNAQSLELDKIRTDLYSKSGANVLKKIEISL
                     EFEGEKLKENENKLTDAVNTVISGFFYEDIFTELGKNNFKKTLEKFIDKKYKIKINEI
                     YILSLSGVEKFDLEEFKRFLASTEAKEKNVGSEVKKALDNLELPQTPAVPNISNIETP
                     QIDQLFQDDNTQNQYDNGEIDINTLNIPKMTSDIEEKIKRDLIANPPQIFKENNSSEE
                     KGFELNLDTNLTMP"
     gene            complement(4904..6247)
                     /locus_tag="SB143_001058"
     CDS             complement(4904..6247)
                     /locus_tag="SB143_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749600.1"
                     /translation="MLDKLEKFLVYDNVFLSGGAGVGKSFLTNELIRSYKRQGKVVIA
                     LGSSALSAFNIAGATLHSFFCLGYCQDMDTLSVFDRNQKQREKILKLKENLKKIDLII
                     IDEISMVSADIFEMIGFRLKNSQFDGKILVVGDFFQLPPVIKEKKENLFLNSTYAFSS
                     FFWKELKFKNIKLTQPKRTHNLEFYGNLSLIRQGFLDDKILNFFENLCINTKELEELD
                     DDYTLLCSINKKVNAVNDDRLSKLESPLVCFKAEICKESKDIDEHKIQTWIKSLNILD
                     ELKLKIGARVIFCVNNWDKGYYNGEQGIIESITYEEDKTYIGIMKNNGIKIMLEPYVF
                     FMEELEQNNNEMFINVLASVSQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRAINPATLKIYFTKRINFKAYFASILKFDISVREFYQNNDFLDLELENNII"
     gene            6296..7660
                     /locus_tag="SB143_001059"
     CDS             6296..7660
                     /locus_tag="SB143_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEF9749601.1"
                     /translation="MKIWLYPCLTALFFTACSIKETKLSPAPSQTILNFKDQQDSHYA
                     KLEFDQNISILSKMNQNINFDSQKYKQLFFSPWHSSFKTLKNQNLFWSFSLYTNPKNT
                     YYFFNKQVIPLSWFEKTIDNANTKELGKFDKKALVIQNTLIKNIPTQRAILKNPFLEN
                     EGIPFDYASDSILNAGTPILVSHFSKDKRYAFVLSEAGVGFIESKDLEFFSNNRAQIY
                     EKLNFLTPLKEKLAILDEDGNFFFESRIGALYPYYKEDKNYFYGKIGPKKYKISKDNA
                     SNFPLSFNDENLKNQISEVLNLPYGWGGYNFERDCSLLTRDVFSAFGLYLPRNSAAQK
                     NSFTHFDINTLDNSQKKDFLDRFGKAYLNLLYLPGHIMLYAGKISDKNVAVHNIWGLR
                     KDETQRLLISSSVITSLEIGKDEISKENLLLSRLKEVSFIYLSKEEKEQITNYLEKLK
                     NKAD"
     gene            complement(7697..8569)
                     /locus_tag="SB143_001060"
     CDS             complement(7697..8569)
                     /locus_tag="SB143_001060"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEF9749602.1"
                     /translation="MKIALIQQKFHFTKEKTIEKTCEFIEQAAKQGAELVCLGELHQS
                     EYFCQSENVDFFDLANDYEKDVQFWSSIAKKHGVVLLTSLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLVCWDQWYPEAARL
                     MALKGAQILIYPTAIGWFDKDEKEEKQRQLGAWLGVQKGHAIANGLYTIAVNRVGFEE
                     DKSGVEEGIRFWGNSFVFGPQGEEICILDSENECIKLVDIDLQRSENVRRWWPFLRDR
                     RIEYFGDLSKRFID"
     gene            complement(8566..9453)
                     /locus_tag="SB143_001061"
     CDS             complement(8566..9453)
                     /locus_tag="SB143_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEF9749603.1"
                     /translation="MNLQKKATLIASLCAIVLALIKFVVGITSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVSVGIFIFYESILKIYY
                     KEEIINLNASIYVMIFALILTFLLVLFLNHVVKKTKSLIIESDALHYKTDCLTNAFTL
                     AALVLIYFTNLHIIDAIFGIVVSLYTAFSAFKIIKKALAFLMDEALPKEQVNQICALI
                     SSNPEVISYHELKTRKTPNCNYLSVHLVFCPIISLLSAHKVSDEIENGVREMFNGEKW
                     DIQIHLDPYDDEEQERQRQ"
     gene            complement(9450..10427)
                     /locus_tag="SB143_001062"
     CDS             complement(9450..10427)
                     /locus_tag="SB143_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEF9749604.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWKPYLGEIIQAYKDFVKAAS
                     EFQKVLLIAPSKSDFAPFENIANVEFFVCDTNDTWIRDFGAIDILEDNRLKALDFTFN
                     AWGNKFQSELDNEVNSKLFKEKFNEKLTKIDFILEGGSIDFNGEGVMLTSSNCLLNEN
                     RNSHLDKSQIEAKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHSICE
                     DEKDEHYIPLQKMKKELEATGFNLVELPLPKPLYYEERRLGATYANFVFVNDALIMPF
                     YKDENDEIIRQRLAKALPKRKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            complement(10524..10961)
                     /locus_tag="SB143_001063"
     CDS             complement(10524..10961)
                     /locus_tag="SB143_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEF9749605.1"
                     /translation="MKKTLQIVLAAAFFAGCASTSVNSKSTSKISNEFMQNQLFEIDK
                     IVVNGKTFDPKNAEENPNISFENNKFYGYAGCNRFFGSYQSNENTLEIQGDRVASTQM
                     LCHPLDVMEFENAFLSNFKGSFTISNKNGKLILNNGEMEIFFK"
     gene            complement(10971..11096)
                     /locus_tag="SB143_001064"
     CDS             complement(10971..11096)
                     /locus_tag="SB143_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HEF9749606.1"
                     /translation="MRENVEASGKNEEISKILLQVADELKIVCHNLESELSQFQI"
BASE COUNT         3754 a         2050 c         1439 g         4039 t
ORIGIN      
        1 attcctatga tcataccgcc accacctatt agcatgccta aggcaaaaaa gcttttctta
       61 acttctaatt tactagcacc taaagcaagt aaaagtgcga tttcggtgcg acgattcatt
      121 actatcatca gtaaagaact cactatattt aagcttgcca ccaagataat aagcatcaaa
      181 acaataaaaa gcgctctttt ttcaagttta agagcagaaa agaagttttg attttgttcc
      241 caccagccta caacagcata atcactcttt aggtaggatt taagtttttc tacatcctta
      301 aatgcatttt cgctataaac atgtacgcca tcataacttt gttgattgct aataccaagt
      361 acttttctaa gtgcatttac atctgtatac atataagctt tatcataaaa tataagccct
      421 gaagcaaaac gcgctttcac atcaaagcgt ttagcttgtg gaactaaaga aaatccactg
      481 gggctaagat ttgaaaagat aagtgaaagc ttatcgtttt tatgtaaatt aagctcatct
      541 gcaagcactg aacccacaag tatatcaaag ccgcttaaat tctcatcttt taaagcttta
      601 gctaccactt cattgatctt aacttcatcg ttaaaattca cgccaaaaag gacgcctcct
      661 tcaaagcgat tgtccgcttt tgctacaact tgagtgctaa tatacggact aaaaagcaaa
      721 tgaggaaatt ctcttttgag ctctgttacc aaatcatcat ccataggaga ataaaatttt
      781 ggcactatgg taataggata attcatcaca aaaaaacgct tttcaaattc tttatcaaag
      841 ccattcatga tagccattgc tacaagtaaa acgcaaagtc ctacacaaac tcctaaaaaa
      901 gccaaaagca tagagagatt gataaagggt tgctctttat caaatcttaa gtatttaaaa
      961 agtagatatt ttaaaacgct ttttttcaag ctaaaattcc ttgtttaggc ccgctttttc
     1021 catggcattc tttaaatttt ttaccgcttc cgcaagggca aggagcattg cgtggagctt
     1081 ttttaaattc agcctcgcct aaattatcct cactagcacc catttccact gatttttcaa
     1141 ataaagcttc attttcttga tttgcttttt cttctaaatt ctgcgcttct tcttggctaa
     1201 atttcacgct aaaaagcaac ttaatgctat caaatttgat acgattaact agttctaaaa
     1261 aaagattata actttctttt ttgtattcta ctaaaggatc tttttgatta tatccgcgaa
     1321 gtcctatacc tgtttttaaa atatccattt gatataaatg ctcacgccaa gcattgtcta
     1381 aaacttgcaa atataaaatg cgctctatgt gatgaagctg tttagaatcc aattttgaca
     1441 ttttttcatc gtatgatttt tctagtattt cgcttagttt ttcttgcatt tcaatcaagc
     1501 taagattttc aaaatcactt tgtttaagtt caatggaaca ttcattcaaa attttagctt
     1561 ttaaattttc aaaatttaaa tccactccac tttcttcaat cataaaatca ttcatgacat
     1621 aagcactata ttctgcaata ttttgtgaaa ttttagtttt aatatcgtat tcttcatcta
     1681 aaagttcatt acggtaacga tagatagtct ttctttgttc attggccaca tcatcatatt
     1741 cgagcaaatg ctttctactt tcaaaatgta agctttcaac ttttttttgc gcattttcaa
     1801 ctgctcttgt tacaatcctt gattctatat gctcgccctc ttgtattccc aagcgctcca
     1861 taatattttt gatacgatca ccaccaaaaa ttcttaaaag attatcttcc aaactcaaat
     1921 aaaaacggct aatacctgga tcaccctgcc ttcctgcacg accacgaagt tgattatcaa
     1981 tacggcggct ttcatgtctt tctgtaccga tgatataaag tccacccaaa gctcttatct
     2041 catcatcgat ttttatatcc acgccacgac ctgccatatt tgtagcgata gtcactgcac
     2101 ctttttttcc cgcatcttga ataattaaag cctcttgttc atgattttta gcatttaaaa
     2161 catgatgagg aattttttct tttacaagca tattgtgaaa aacttcactt ctttcaatgc
     2221 tcgcagttcc tacaagtaca ggttgtcctt tagcgtttgc ttttttgatt tcttcgatta
     2281 cagctttaaa tttttcattt tgagttttat aaatcaaatc atccttatcc tgtcttttga
     2341 tagggatatt tgtaggtata gaaacaacat ctaagctgta aatttgggaa aattcagttg
     2401 cttctgtttg tgccgttcct gtcataccgg ctaatttttc atacattcta aaatagtttt
     2461 gaaatgtaat atcagctaaa gtctggcttt cttcttgaat ttttacattt tccttagcct
     2521 ctaaagcttg atgaagtcct tcgctaaatc ggcgaccctc gcttaaacga cccgtaaatt
     2581 catcaacgat gattacttcg ttatttctta gaacataatg cacatctttt tcaaaaagat
     2641 tgtgtgcctt taaagcttga tcaagctgat gagccaagat agcattatca agactgtata
     2701 aattttccac accaaataat ttttcagcct tggcaattcc tgcttctgtg attaagatat
     2761 tacgattttt ttcatccact ataaaatcac cctcaggctt agcaggaggt aaaactgctt
     2821 cccctctttg catttgctta gccacttcat ttgccttgat ataaccgtct aaagtacgat
     2881 ttgtaggacc gctgatgata agcggggttc ttgcttcgtc aattaaaatg ctatctactt
     2941 catccacgat aacaaaatgg tgttctcttt gtaccttttc agcctttgag aatttcatat
     3001 tatcacgcaa ataatcaaaa ccaaattcat tatttgtccc ataagtaata tcacaatcat
     3061 aggctttttt atgttctaaa tcactatttt gagatgaaag aatcacgcct acgctaaagc
     3121 ctaaaaaatt ataaatcgca ctcatttgtt ctgcatctct tttagccaaa taatcattga
     3181 ccgtaaccac atgcacgcct tttccactca tagcatttag cacaacaggt agggttgcta
     3241 caagagtttt accctcccct gttttcattt ctgcgatttt tccatcgtgc aaaaccatac
     3301 cgccgattaa ttgcacatca aaatggcgca tatttaaagt tctttttccc acttctctaa
     3361 ctatggcaaa aacatcattt aaaatatcac tttctttttt ttctccgctt agaatttgct
     3421 ctttaaattt tccaaattca gcctttaatt catcatcact taaattttga tatttactct
     3481 caagagcatt tatttgtgct actcgtttaa gatatttttt tacctcacga tcattttttg
     3541 tcccaaatac ggcttttaag gtatttaaaa acatttttaa acctcttttg atattttttt
     3601 caagctatga ttataacgat tatttaatta aaattagcta gaatgttgta aaaattccaa
     3661 aataaattta gaaggtaagt atatgaaaaa aatattttgt ttatttttct tttttttaag
     3721 tcatatttta gctattgatc ttaattttaa cacctattct agcaatttca cgcaatcagt
     3781 aaaatcaaaa gattcaaccc tttcatactc aggacatttt atcttaagtc aagaacaagc
     3841 ttattggagc tatgacactc caagcaaaaa agaaatatat atcaataaaa atcaaatcat
     3901 cttagtagaa catgatttag aacaagttgt tttttcacat cttgataaca tccctaacct
     3961 taatgaaatt tttaaaaaag caaagcattt aaatgacaat caactgatcg caaaatatga
     4021 aaatataaat tataccatca cgctcaaaga taatgaaatt caaagtattg cttataagga
     4081 tgaatttgaa aacgatattt taatcactct aaaccatcaa atcaaaaatc ctactatcaa
     4141 tcctgaagtt tttaaaccca aatttcctaa ttattacgat atggttcgct aagattaagg
     4201 cattgttaaa tttgtatcca aattcaactc aaagcctttt tcttcagagc tattattttc
     4261 tttaaaaatt tgcggtggat ttgcaatcaa atctcgcttt atcttctctt ctatatctga
     4321 agtcatttta gggatattaa gagtattgat atcgatttct ccattgtcat attgattttg
     4381 tgtattatca tcttgaaaaa gttgatctat ttgtggagtt tctatattgg aaatatttgg
     4441 aaccgcggga gtttgaggaa gttctaaatt atcaagagct tttttaactt cgctacctac
     4501 atttttttcc ttagcttcag tacttgccaa gaaacgctta aattcttcta aatcaaattt
     4561 ttctactccg cttagagata agatataaat ctcgttgatt ttaattttgt attttttatc
     4621 tataaatttt tctaaagttt ttttaaaatt attttttcca agctctgtaa aaatatcttc
     4681 ataaaaaaat ccagaaatca cggtatttac cgcatctgta agcttgtttt cattttcttt
     4741 taatttctcg ccttcaaatt ctaaagaaat ttcaattttt ttaagtacat ttgctccgct
     4801 ttttgagtat aaatctgttc ttattttatc aagctctaaa ctttgtgcat taaggcttaa
     4861 agataaaaaa gcaagtaaaa atattttttt cattctcatc cttttaaatg atattatttt
     4921 ccaattcaag atctaaaaaa tcattatttt gataaaattc tctcacactt atatcaaatt
     4981 ttaaaatact agcaaaatag gctttaaaat ttattctttt tgtaaaataa attttaagag
     5041 tagcaggatt tatagcacgc gataaagcca cataaagttg tccgttttca aaaatatgat
     5101 caatatcgca tactaatttt tctatactca taccctgtga tttatgtatg gtaatagcat
     5161 aagctagttt gataggaaat tgacttacgc ttgcaagtac attgataaac atttcattat
     5221 tattttgctc aagctcttcc ataaaaaata catagggttc aagcataatt ttaataccat
     5281 tgtttttcat gataccaata taagtcttat cctcttcata agtgatactt tcaatgatgc
     5341 cttgctcgcc attataatat cccttatccc aattatttac acaaaaaata acgcgtgcgc
     5401 ctattttgag tttaagctcg tctaaaatat ttaaactttt tatccaagtt tgaattttgt
     5461 gctcatctat atctttagat tctttgcaaa tttcagcttt aaaacaaaca agcggacttt
     5521 caagcttgct taatctatca tcattgacag catttacctt tttatttata ctacaaagca
     5581 aggtataatc atcatctaat tcttctaatt cttttgtatt gatacataaa ttttcaaaaa
     5641 aatttaaaat tttatcatct aaaaatcctt gcctaatcaa ggataaattt ccataaaatt
     5701 ctaaattatg cgttcttttt ggttgagtta atttgatatt tttaaatttt aattctttcc
     5761 aaaaaaagga agaaaaagca taggtagaat ttaaaaaaag attttctttt ttctctttaa
     5821 tcacgggcgg taattgaaaa aaatcaccca caactaaaat tttaccatca aattgcgaat
     5881 ttttcaatct aaaacctatc atctcaaaaa tatcagcact taccatagaa atttcatcga
     5941 tgatgattaa atcaattttt ttaagatttt cttttaactt taaaatcttc tctctttgtt
     6001 tttgattgcg atcaaaaacg ctaagcgtat ccatatcttg acaataaccc aaacaaaaaa
     6061 aactatgcaa ggttgcccct gctatattaa atgctgaaag tgcgctagaa ccaagagcta
     6121 taacgacctt gccttgtctt ttgtaagagc gtatgagttc attggttaaa aaacttttcc
     6181 caacgcctgc gccaccactt aaaaaaacat tatcatagac taaaaatttc tctagtttat
     6241 caagcattat atttccttgg ctttaattat aactactttt tgtaaaaggt tgattatgaa
     6301 aatttggcta tatccttgtc ttacagcact attttttacc gcttgttcta taaaagaaac
     6361 aaaattaagt ccagccccat ctcaaactat tttaaatttt aaagatcagc aagactcaca
     6421 ctatgcaaaa ctcgaatttg atcaaaatat cagcatttta tccaaaatga atcaaaatat
     6481 aaattttgat tctcaaaaat acaaacaact tttttttagc ccatggcaca gctcttttaa
     6541 aactttaaaa aatcaaaatc ttttttggtc attttcttta tatacaaatc ctaaaaatac
     6601 ttattatttc tttaacaagc aagtaattcc tttatcatgg tttgaaaaaa ctatagataa
     6661 tgcaaacact aaagagctag gcaagtttga taaaaaagct ttagtaatac aaaacaccct
     6721 tattaaaaat atccctacgc aaagagcgat tttaaaaaat ccttttcttg aaaatgaagg
     6781 aattcctttt gattatgcaa gcgatagtat tttaaatgcg ggtactccta ttttagtttc
     6841 gcattttagc aaggataagc gttatgcttt tgtattaagc gaagcagggg tgggttttat
     6901 agaaagcaaa gatttggaat ttttctctaa caatagagcg caaatttatg aaaagcttaa
     6961 ctttcttaca cccctaaaag aaaaactagc tattttagat gaggatggaa attttttctt
     7021 tgaaagcaga atcggagcgc tttatcctta ttataaggaa gataagaatt atttttacgg
     7081 aaaaataggc cctaaaaaat acaagatatc taaagataat gcaagtaatt ttcctctaag
     7141 cttcaatgat gaaaatttaa aaaatcaaat ttctgaagtt ttaaatttgc cttatggctg
     7201 gggtggttat aattttgaaa gagattgctc tttacttact cgtgatgtct tttcagcttt
     7261 tgggctttat ttgccaagaa attcagctgc gcaaaaaaat tcttttacgc attttgatat
     7321 aaacactctt gataattctc aaaaaaaaga tttcttagat cgttttggaa aagcttattt
     7381 aaatttactc tatttgcctg gtcacataat gctttatgca ggaaaaattt cagataaaaa
     7441 tgtcgctgtg cacaatatat ggggattaag aaaagacgaa acccaaagac tgcttataag
     7501 ctcgagcgtt attactagct tagaaattgg aaaagatgaa atttcaaaag aaaatttatt
     7561 gctttcaaga cttaaagagg taagttttat ttatttgagt aaagaagaaa aagaacaaat
     7621 tacaaattat ttagaaaagc taaaaaacaa agcggactaa ttttaaaaag cccttattaa
     7681 agagcttttt aaatttttaa tcaataaatc ttttcgataa atcaccaaaa tactctatgc
     7741 gtctatcgcg taaaaaaggc caccaacgac gcacattttc acttctttgt aagtcaatat
     7801 cgacaagctt tatgcattca ttttcactat ctaaaataca aatttcttca ccttgtggtc
     7861 caaaaacaaa agaatttccc caaaatctta tcccctcttc tacaccactt ttatcctctt
     7921 caaaacccac tctattgact gctatagtat ataaaccatt agcaatagca tgtccttttt
     7981 gaacccctag ccaagcgcca agttgccttt gtttttcttc tttttcatcc ttatcaaacc
     8041 aaccaatagc agtaggataa atcagaattt gagctccttt taaagccata agtctagctg
     8101 cttcaggata ccactgatcc caacaaacaa gcactccaag ctttcctaaa cttgtattta
     8161 taggctcaaa acccaaatca cctggggtaa aatagaattt ttcataaaaa caaggatcat
     8221 caggtatatg catcttgcga tattttcctg ctatacttcc gtctttttca aaaactacag
     8281 cagtattatg ataaagcccc gcgcttcttt tttcaaaaag tgaagtaagt aaaactacac
     8341 cgtgcttctt tgctatactc gaccaaaact gcacatcttt ttcataatca tttgccaaat
     8401 caaaaaaatc tacattttca ctttggcaaa aatactcgct ttgatgaagc tctcctaagc
     8461 aaacaagctc ggctccttgc ttggcggctt gttcgataaa ttcgcaagtt ttttctatgg
     8521 ttttttcttt agtaaaatga aatttttgtt gaattagtgc aattttcatt gtctttgcct
     8581 ttcttgttct tcatcatcat aaggatctag gtgaatttgt atatcccatt tttccccatt
     8641 aaacatttca cgcacaccat tttctatctc atctgaaact ttatgtgcgc ttaaaagcga
     8701 aattatagga caaaacacca aatgaacgct taaataattg caatttggag ttttacgcgt
     8761 ttttaactca tgataagaaa tcacttcagg attactagat attaaagcgc aaatttgatt
     8821 aacctgctcc ttaggcaaag cctcatccat taaaaaagct aaagcttttt taataatttt
     8881 aaaagcagaa aatgcagtat aaagactcac gactatgcca aaaatcgcat caataatatg
     8941 caaatttgta aaataaatca aaactaaagc tgctaaagta aaagcattag tcaagcaatc
     9001 tgttttataa tgtaaagcat cactttctat aattaagctt ttagtttttt taactacatg
     9061 atttaaaaaa agtacaagta gaaaagtaag tattaaagca aaaatcatta cataaatact
     9121 tgcatttaaa ttaataattt cttctttata ataaattttt aaaatacttt cataaaaaat
     9181 aaaaatccct actgatacga tgaaaacacc ttctaaaagt cccattaaag cttcgatttt
     9241 agaaaaacca aaattataat tttcgtttgc tttttgagaa ctttttttta aggctaaaaa
     9301 gttaaaagcc gatattgcaa agtccatcaa agaatcaatc gcacttgaaa gtacagctac
     9361 tgaaccgctt gttataccca ctacaaattt aatcaaagcc aatactatag cgcataaact
     9421 tgctataagc gttgcctttt tttgtaaatt catcttagac ccttgaagcg gttttgacaa
     9481 gagcagtgta aagagccatt ttggcgtaaa aacactcttg catctacgcc tataatcttg
     9541 cgtttaggta aagccttagc caatctttgc cttatgattt catcattttc atccttataa
     9601 aaaggcataa tcaaggcatc atttacaaaa acaaaatttg cataagtggc tccaagtctt
     9661 ctttcttcat aatacaaagg ctttggcaag ggtagctcta ctaaattaaa ccctgtggct
     9721 tcaagttctt ttttcatctt ttgcaagggt atataatgct catctttttc atcttcgcaa
     9781 atagaatgcg ctatagtatt tttatcgata aatcttgcta aagtatcgat atgatgatct
     9841 gtatcatcac cttttataaa accattttct agccaaataa tttgttttaa gccaaaaatt
     9901 tcttttaatt ttgcttcaat ttggcttttg tctaaatgag aatttctgtt ttcatttaaa
     9961 agacaattgg agcttgtaag cattacgcct tcgccattaa aatcaatact tccaccctct
    10021 aaaataaaat cgatttttgt aagcttttca ttaaattttt ctttaaaaag tttagaattt
    10081 acttcattat ctagctcgct ttgaaattta tttccccaag cattaaaagt aaaatcaaga
    10141 gcttttaaac gattgtcttc taaaatatca atagcaccaa aatcgcgtat ccatgtatca
    10201 ttagtatcac atacaaaaaa ttctacattt gctatatttt caaatggagc aaagtcgctt
    10261 ttactaggag cgataagtaa aaccttttga aattcacttg ctgctttaac aaaatcctta
    10321 taagcctgta taatctctcc taaataaggc ttccaatcgc tcttttcatg aggtaaagaa
    10381 agcattaaat attcttgctc actccattcg ggaattgatt ttatcattta actacctttt
    10441 ttgataataa aattataatt gtatcatttt ttagtttttt gtcaagtcga agaaaaacac
    10501 tcctaactaa ggagtgtggc atgttattta aagaatattt ccatctcgcc gttgttaagg
    10561 attaatttgc catttttatt tgaaattgta aaacttcctt taaaatttga aagaaaagca
    10621 ttttcaaatt ccataacatc caaaggatgg caaagcattt gagttgaagc gacacgatct
    10681 ccttgaattt ctaaagtatt ttcattactt tgataagaac caaagaaacg attacatcct
    10741 gcataaccat aaaatttatt attttcaaaa ctgatatttg ggttttcttc agcattttta
    10801 ggatcaaagg ttttaccatt aactacgatt ttatctattt caaaaagctg attttgcata
    10861 aattcattgc tgattttaga agttgacttt gaatttacag aagtgctagc acaaccagca
    10921 aaaaaagctg cagctaaaac aatttgcaaa gtttttttca tatttttcct ttaaatttga
    10981 aattgactca attcactttc taaattatga cacactattt ttaactcatc tgccacttga
    11041 agtagaattt tagagatttc ctcattttta ccgcttgctt caacattttc tcgcatatgt
    11101 ataagcaaat tttgaatatt ttcttgcgaa attttaatcc tctgagtgca ttgggtcaca
    11161 agatttttag aattttgatt gcaaagtttt acttcgtttg cactacttgc aagcaaatgg
    11221 gtattttcat tgagtgaaaa aatactatga gaattttcct taagttcctt agtaacctct
    11281 tg
//
LOCUS       DARAII010000049        11146 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.049, whole genome shotgun sequence.
ACCESSION   DARAII010000049 DARAII010000000
VERSION     DARAII010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11146
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.049"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..431)
                     /gene="groEL"
                     /locus_tag="SB143_001065"
     CDS             complement(<1..431)
                     /gene="groEL"
                     /locus_tag="SB143_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; many bacteria have multiple
                     copies of the groEL gene which are active under different
                     environmental conditions; the B.japonicum protein in this
                     cluster is expressed constitutively; in Rhodobacter,
                     Corynebacterium and Rhizobium this protein is essential
                     for growth; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEF9749607.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APTITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIA"
     gene            complement(453..713)
                     /gene="groES"
                     /locus_tag="SB143_001066"
     CDS             complement(453..713)
                     /gene="groES"
                     /locus_tag="SB143_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEF9749608.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKIDNSEYLVLNLDDILGILK"
     gene            876..3416
                     /locus_tag="SB143_001067"
     CDS             876..3416
                     /locus_tag="SB143_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749609.1"
                     /translation="MKKIFYGVAAFIVVLLIALYTLLFTSLGNNIVANFIQDKIKQST
                     GLDANITQFVLCFSSLDIEANLANMADLKLEGNLSLFKLGFDLDYIISLDKNYAKNLG
                     LNLNQNLAFLGKINGKSSDFMIDGKGYLFGSNVLLDARVYNYSPIALNLSANDLQISE
                     LLALFGRGNLAKGTIDIASKISAKDLKPDGNAIIKLDNTYINYAEIKKEFNIDLPENS
                     NLKAEILANIKDDTVYTVSKIYNSYLTLQTQKTLYNLIQNTLNTDFDLSVPNLAKLEK
                     LTKTKLNGSLGVKGDASVANNALTGLNANVIGLGGEVKANLKNNQLNLNASNASLEKI
                     LALIGYGGIVSGNLNANLVSEGLDFANFNADVKINNAKLNSAEIKKIAKLDLPNTNFS
                     LDAKAKAKNGNISYNALLASNLLNIKKLDGTYNLKNAELNTDLNAFIDDLSQFNAIAG
                     QKLQGKAELNAKAHIIGAQIQNLNANANIAGGLIKANSNGKKLDLDINKLDLSKVFTI
                     VGMPNYASGIVNASARLDDINFNNLNGKINAEAKGILNAVVLSQIMDKKFPSNTNYDL
                     NIKADLKNNIADFEGVLNSSLANLSNFKGKFDINKMVLNSDYVLDIADFSKLGFLLDR
                     KLKGKASFNGKIGFDKTLNFTALSKNLFEGKLDSTLKNNILNAKLEGVDLSTLASGLD
                     FIDIYQGKANLDAKYNLISEQGEVNADMKEGKLKPNAITAALKLITLKDITTDVFHTA
                     NAKALINKENIKLDLNMQADRSYVLVSSGMLNSKSGSLNLPFDIKIDRANFKGNITGT
                     TQKPQVKLEAGSVVNSIKNIVGDKAQDGVQKAGEKVDEGINKLLNKIF"
     gene            3426..4037
                     /gene="ribE"
                     /locus_tag="SB143_001068"
     CDS             3426..4037
                     /gene="ribE"
                     /locus_tag="SB143_001068"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEF9749610.1"
                     /translation="MFNGLIREIAKVKSYQNNVLNLKANYRPNLGDSVAVNGACLSVT
                     KLHSDGFELELSHESRKHIAVQNLKDKVHIEPALRYGDRIDGHLMQGHIDFIGRLEKI
                     EKDENGVDFYIALPKEAMKFMARKGSIGIDGVSLTINEIIENGVRLTIIPITFKETLF
                     KEYEIGREINIESDLLARYIYAQMQDKDKGLSWEEVERIAYLY"
     gene            4001..4681
                     /locus_tag="SB143_001069"
     CDS             4001..4681
                     /locus_tag="SB143_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HEF9749611.1"
                     /translation="MGRSGENCLSLLENQKVSVFCAYDKDYNIFRAKVHKENLFSHLG
                     FKDIEKCVFMDQIHSNKVEIYDENLKNLSCDGLISIEKNTALCVLSADCLPLILWHES
                     GIIAALHSGRKGSFENILKECVDKIYTKNPNLDMQKFHLFILPSICAKNYEIDGEILE
                     FARVEFKDFLDERKLDLKALVKFQAQNLGIKNIIDSNICSFDDKTFYSYRRDKTLKRF
                     VSVVYLKG"
     gene            4686..4892
                     /locus_tag="SB143_001070"
     CDS             4686..4892
                     /locus_tag="SB143_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749612.1"
                     /translation="MYEKKDLRVLKIIQKAREFGDGDLLNEALVNQLVNAEFKEIESK
                     EREELIALLNSLIEAKDKALLSNP"
     gene            complement(4889..6049)
                     /locus_tag="SB143_001071"
     CDS             complement(4889..6049)
                     /locus_tag="SB143_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEF9749613.1"
                     /translation="MKKLLLLFAFVIQSFAALSVEELTWDNGDTLLKFLQRNSIPISL
                     YYGLDREDQELASDIAYKVKYQVLKDENNNIEQVLIPISDDLQIHIYKDKNNQYTLAF
                     SPISYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRSFRGSVNFRNIQKGDKVTL
                     YYEQKRRMGKLWGDIAIKMAVVEINKNAQEVFAFNDIFYNRDGKEVEAFLLTKPVNYT
                     RISSTFSTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGTITFVGTKGGYGNVIQVK
                     HDSGYMTLYAHLSRFAKIKKGQKVNQGQLIGYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKEEFKSTIVKYEGIINEALAANKPNPPKEEDFENYIEF"
     gene            6209..6901
                     /locus_tag="SB143_001072"
     CDS             6209..6901
                     /locus_tag="SB143_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEF9749614.1"
                     /translation="MSLFAIDLNLKPVKMELLKVEDIYGYVEDSPDIKLNSSGVVIQR
                     FQTSKSIIARASVIAKEKGLAKLKFSVFADLEQDALPLPNVVPQKGNEVVLNFLYDRG
                     LVIAPDEQTYNELVFSFPEIYFTHIDMLGAQLIRSSSLAPKRSDFRKFCADNAVGILI
                     FALEDKAKIVDCQDFSELYELTISKPSSIQVPFYSRIGGYKSNFFDFNSQEVGNYYRY
                     YDALINIPKVSQ"
     gene            6898..8280
                     /locus_tag="SB143_001073"
     CDS             6898..8280
                     /locus_tag="SB143_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEF9749615.1"
                     /translation="MKKEFEQYFIKLLGSENAYFDDIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDISKILKFCNENNIIIIPRGAGSGFTGGALAVNGGLILSFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQREVAKHGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPNGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIVLPKF
                     KKTAFGIFPSVKSAMNAVYKSLASGVNPVSMEFLDNLSIRAVESKFNKGLPVDAGAIL
                     IADVDGNVKEAIDEDLKILGEHFLDAGASQFKIAKDEQEAADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPALLEGIDEISKKYGFKIPCFGHTGDGNVHTNIMVPDKNDEEQ
                     VKKGYEAVEEVFKLTVELGGTLSGEHGIGLSKAPFMKLAFSDAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            8292..9098
                     /locus_tag="SB143_001074"
     CDS             8292..9098
                     /locus_tag="SB143_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEF9749616.1"
                     /translation="MKRIFAILSNLRDKEILNYAAALSFYTILSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQIIFAFLIPAQQDIVAAYLDTFLNNSVNLGIVGLIAMTFTSLAFFS
                     GYDFVINRITKSEPKGLWQSISSYWTLLTLVPLGLGLSFYISGLIQQALDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSIQKGTLKSLIFVSFAAGAIWYIGKNLFVYYIVYNKTYA
                     SVYGSFSTILFFFIWIYISWIVYLFGIKIYYFLNHNHDKGDKIRKNTKKS"
     gene            complement(9042..10301)
                     /locus_tag="SB143_001075"
     CDS             complement(9042..10301)
                     /locus_tag="SB143_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEF9749617.1"
                     /translation="MSFWNSLYLNLKEFRYLFLFGFIVFVFNIFLEYNHFLNLKEKKH
                     YLVENALLLQYYPKHNKNNKKYWVLKLKTKDFILYTTSFKDLNLSKNQLLNLKIITNN
                     ISFKDYLGKSFYAPSYGFEVLGYLKNNTLISYFLNQHTNEKIQEFYGALFFALPISSE
                     LRNDVNHYGVAHLIAISGYHIGLLFTLVFFILAPLYSFFQKRYFPYRSLRFDLSIFIF
                     ILLFAYAYLIGFVPSYVRSLIMALWGFYLLCKNIKILSFFTLFISIYLCIVLYPRLLL
                     SIGFFFSCLGVFYIFLYLHHFSKLFNNFLNIILVNIWTFFCMITPVLYFFPLISYQQF
                     LAIILSGIFIVFYPLVLCLHFIAHGNLLDPVLIDFFNLKFYALNIKIPTWALISYLIL
                     SFIAMRYKILALFCIFANFIPFIMIMI"
     gene            complement(10301..10858)
                     /locus_tag="SB143_001076"
     CDS             complement(10301..10858)
                     /locus_tag="SB143_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEF9749618.1"
                     /translation="MQDMIDTLLKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLAL
                     CISIAFVANTLGSTLLFILGKYYKKDIMPYFKNHRRKLALAMMKTKQHGVVLLITQKF
                     VYGLKTFIPIAAGIAKYKFINFFIINTFASLLWAVLLGYSAYAFGFAIEAIFNKLSSY
                     PYIAPLFLIVLVGIIWFYLTKFSKK"
     gene            complement(10869..>11146)
                     /locus_tag="SB143_001077"
     CDS             complement(10869..>11146)
                     /locus_tag="SB143_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEF9749619.1"
                     /translation="RPGARREVLEAFLRRVSELEEIAKSKEGIKNAYAINAGREIRVI
                     ANAKLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIRELRAIEYAK"
BASE COUNT         3878 a         1490 c         1921 g         3857 t
ORIGIN      
        1 gcgatttctt ttttatcttt tacttcacga gaaagttttt taagttcagc tacaattgct
       61 tcgcaagctt tatccatacc tcgcttaact tcgataggat ttgctccagc tgtaatattt
      121 cttaaacctt ctttaaaaat agcatgcgct aaaacagttg cagttgttgt gccatcacct
      181 gcttgatctg ctgttttgct tgccacttct ctaacaagtg aagcacccat attttcaaga
      241 ctgtctttaa gttctacttc tttagctaca cttacaccgt ctttagtgat agtaggtgca
      301 ccaaagcttt tttggattaa aacattacga cctcttggtc ccatagtaac ttttactgca
      361 tcatttaatt ttttaacacc ttcataaagt ttgtttcttg cttcatctga aaaaataatt
      421 tcttttgcca tttgtctatc ctttttttta aattatttta aaattcctaa aatatcatct
      481 aaatttaaaa ctaaatattc gctattatca attttgattt ctgttccgcc atatttagca
      541 aatacgattt tatcaccatt tgcaatatca gtgatttctt tacttactgc tactacttca
      601 cccattaaag gcttttcttt agcattatct ggtataatta tacccgaagc tgttgttttg
      661 gtttcttcta cgcgttttac taaaacacgc tttcctaaag gttgaaaatt cattttgtcc
      721 atccttaaaa atattgattt ttagcactct ttaattttga gtgataatat catactataa
      781 aaaatgaatt ttgtcaatac tttgagtaaa aatatttata aaactttagt taattagact
      841 aaagttaatt aataaaaaaa actaaaggat ttaaagtgaa gaaaatattt tatggagtag
      901 cggcttttat tgtggtgctt ttaatcgcac tttatacctt gctttttact agccttggta
      961 ataatatagt cgcaaatttt attcaagata aaatcaagca aagtacaggt cttgatgcca
     1021 atattactca gtttgttttg tgtttttcaa gtcttgatat tgaggcaaat ttagccaata
     1081 tggccgattt aaaactagaa ggaaatttaa gtctatttaa acttggcttt gatcttgatt
     1141 atattatcag tttggataaa aattatgcta aaaatttagg tttaaattta aatcaaaatt
     1201 tggctttttt gggaaagatt aatggtaaat cgagcgattt tatgatcgat ggcaaggggt
     1261 atttgtttgg ttctaatgtg cttttagatg caagagttta taattattct cctattgctt
     1321 taaatttaag cgctaacgat cttcaaattt ctgaattgct agcacttttt ggacgaggaa
     1381 atttagccaa aggaactata gatatagcaa gtaaaatttc tgctaaagat ttaaaacctg
     1441 atggaaatgc tatcattaaa cttgataata cttatataaa ttatgcagaa attaaaaaag
     1501 aattcaatat agatttacct gaaaattcca atcttaaagc tgaaatttta gcaaatatta
     1561 aagatgatac agtctataca gtgagtaaaa tttataatag ttatttaact ttacaaactc
     1621 aaaaaaccct ttataatctt attcaaaata ccctaaatac ggattttgat ctatcagtcc
     1681 ctaatcttgc aaaacttgaa aagcttacaa aaacaaagct aaatggatct ttaggagtaa
     1741 agggtgatgc gagtgtggct aataatgctt taactggttt aaatgctaat gttatagggc
     1801 ttggcggaga agtgaaggca aatttaaaaa acaatcaatt aaatcttaat gcaagcaatg
     1861 ctagcttgga aaaaatacta gctcttatag gctatggtgg tattgtttct ggaaatttaa
     1921 atgcaaatct tgtaagcgag ggattggatt ttgcaaattt caatgcagat gtaaaaatca
     1981 ataatgcaaa attaaatagt gctgaaatta aaaaaatagc caagctcgat cttccaaata
     2041 caaattttag tcttgatgcc aaagctaaag ctaaaaatgg caatatatct tataatgcgc
     2101 ttttagcgtc taatttgctc aatattaaaa aacttgatgg aacttacaat cttaaaaatg
     2161 cagaattaaa cacagactta aatgctttta ttgatgattt atctcaattt aatgccatag
     2221 caggacaaaa gttacaaggc aaggcagaac ttaacgcaaa agcacatatt ataggcgctc
     2281 aaattcagaa tttaaatgct aatgcaaata tagcaggtgg attaatcaag gcaaattcta
     2341 atggaaaaaa attagactta gatataaaca agcttgatct ttccaaggtt tttactattg
     2401 taggtatgcc aaattatgca agcgggatag ttaatgctag tgcgcgttta gatgatataa
     2461 attttaacaa tcttaatggc aagataaatg cagaagctaa aggtatttta aatgctgtag
     2521 ttttaagtca gataatggat aaaaaatttc caagcaatac aaattatgat ttaaatatca
     2581 aagcagattt aaaaaataat atcgctgatt ttgagggtgt tttaaattct tctttggcta
     2641 atcttagtaa ttttaaagga aaatttgaca ttaacaaaat ggtgttaaat tcggattatg
     2701 ttttagatat tgctgatttt tcaaagctag gttttttact cgatagaaaa ctcaaaggaa
     2761 aggcgagttt taatggaaaa attggttttg ataaaacttt aaattttact gcattgagta
     2821 aaaatttatt tgaaggaaaa cttgatagta ctttgaaaaa taatatttta aatgcaaagt
     2881 tagagggagt ggatttaagt actttggcaa gtggacttga ttttatagat atatatcaag
     2941 gcaaggcaaa tttagatgct aagtataatc ttataagcga gcaaggagag gttaatgcag
     3001 atatgaaaga gggtaagctt aaacctaatg ctatcactgc agctcttaag cttattactt
     3061 taaaagatat cactactgat gtttttcata ctgccaatgc taaagcgctt attaacaaag
     3121 aaaacatcaa gcttgattta aatatgcaag cggatcgttc ttatgtcctt gtttcttcag
     3181 gtatgctgaa ttctaaaagc ggaagcttga atttgccttt tgatatcaag atagatagag
     3241 ccaattttaa aggcaatata acaggaacaa cacaaaagcc tcaagttaaa cttgaagcgg
     3301 gtagtgtagt aaattccatt aaaaatattg taggtgataa agcccaagat ggagttcaaa
     3361 aagcaggaga aaaagtagat gagggtatca ataaattatt gaataaaatt ttttaaggtt
     3421 aagtgatgtt taatggactt ataagagaga ttgctaaggt taaatcttat caaaataatg
     3481 ttttgaattt aaaggcaaat tatcgcccta atttgggcga tagtgtagct gttaatggag
     3541 cttgtttgag cgtgactaaa cttcatagcg atggttttga actcgaactt tcacacgaga
     3601 gtcgcaagca catagcagta caaaatttaa aagataaggt gcatatagaa cctgctttaa
     3661 ggtatggaga taggatagat ggacatttga tgcaaggaca tattgatttt attggtaggc
     3721 ttgaaaagat tgaaaaagat gaaaatgggg ttgattttta tatagctttg cctaaagaag
     3781 cgatgaaatt tatggcaaga aaaggcagta taggtataga tggggttagc cttacgatca
     3841 atgaaattat agaaaatggc gttagattaa ccattatacc tattactttt aaggaaacac
     3901 tttttaaaga atatgaaata ggccgagaaa tcaatataga aagcgatttg cttgctcgtt
     3961 atatttatgc acaaatgcaa gataaggata agggactatc atgggaagaa gtggagagaa
     4021 ttgcttatct ttactagaga atcaaaaagt cagtgttttt tgcgcttatg ataaagacta
     4081 taatatcttt agagccaaag ttcataaaga aaatttattt tctcatttgg gttttaagga
     4141 tattgaaaaa tgtgttttta tggatcaaat tcactccaat aaagttgaaa tttatgatga
     4201 gaatttaaaa aatctaagtt gcgatggctt gataagtata gaaaaaaata ccgcactttg
     4261 tgttttaagt gctgattgtt tgcctttgat tttatggcat gaaagtggca ttatagcggc
     4321 acttcattca ggaagaaaag ggagttttga aaatatttta aaagagtgtg tggataaaat
     4381 ttatacaaaa aatcctaatt tagacatgca gaaatttcat ctttttatct tgcctagtat
     4441 ttgtgctaaa aactatgaaa tagatggaga aattttagaa tttgcaagag tagaatttaa
     4501 agatttttta gatgaaagaa aacttgattt aaaagctttg gtaaaatttc aggctcaaaa
     4561 tttaggtatt aaaaatatta tcgacagtaa tatttgtagt tttgatgata agacatttta
     4621 ctcttatcgt cgcgataaga ctttaaaacg ctttgtgagt gttgtttatc taaagggttg
     4681 atttgatgta tgaaaaaaaa gatttaagag tattaaaaat tattcaaaaa gctagagagt
     4741 ttggggatgg ggatttgctt aatgaagctt tagtaaatca gcttgttaat gctgaattta
     4801 aagagataga aagcaaagaa agagaagagc ttatagctct tcttaattcc ttgatagaag
     4861 ctaaagataa ggctttgctt agcaatcctt aaaattctat ataattttca aaatcttctt
     4921 ctttaggagg atttggctta ttagcagcta aggcttcgtt tataattcct tcatatttta
     4981 ctatagtgct tttaaattct tctttggctt ttccgcttag ctctgattta gcgattttaa
     5041 ctactgaagc aggattgatg gctttattgt ttagataaac accaaaatgt aaatgtgggc
     5101 ctgtactcat gcctgttgaa cctacataac caatgagttg accttgattt actttttggc
     5161 ccttcttaat ttttgcaaaa cgacttaaat gagcatataa agtcatatag cctgaatcat
     5221 gctttacttg tatgacattt ccatatcctc ctttagtgcc tacaaaagtg attgtccctt
     5281 tgcctgcact ttttacaggt gttccagtag gcgctgcata gtctatacca aggtgtgcac
     5341 gatagcgttt gagtatagga tgatatcttg cagtactaaa agttgatgat attcttgtat
     5401 aatttacagg tttggttaat aaaaaagctt ccacttcttt tccatcgcga ttgtaaaaaa
     5461 tatcattaaa agcgaatact tcttgtgcat ttttgttaat ttctactaca gccattttta
     5521 tagcaatatc cccccaaagt tttcccatgc gtcttttttg ctcataataa agagtaacct
     5581 tatcgccttt ttggatattg cgaaagttaa cacttcctcg aaaggagcgc accatagcac
     5641 gagctagagt actgctacca ctttcttcat aaacatcttg ataggctgaa cttttgattg
     5701 ttaaatgtaa aattctatct tctttttgat aagaaatagg agaaaaggca agggtgtatt
     5761 gattgttttt atctttataa atatgaattt gtaaatcatc actgataggg attaaaactt
     5821 gttctatatt attattttca tcttttaaaa cttgatattt tactttataa gctatatcag
     5881 aggcaagttc ttgatcttct ctatcaagcc cataataaag cgatataggg atagaatttc
     5941 tttgcaagaa tttaagcaaa gtatcgccat tatcccaagt aagttcttca acgctaagtg
     6001 cggcaaaact ttgaataaca aatgcaaata ggagtaagag ttttttcata taaagacctt
     6061 attttttcga ggatttttaa atttttaaaa gctatatttt actttataat tcttacaatt
     6121 gcttaacaaa aaaggattat aatacattaa attgattttt taaggagtta gtttgcttaa
     6181 atttctagca tttattttaa gcttaagtat gagtcttttt gcaatagatt taaatttaaa
     6241 gcctgtaaaa atggaacttt taaaggttga agatatttat ggttatgttg aagatagtcc
     6301 tgatataaaa ttaaattcaa gcggtgttgt tatacagcgt tttcaaactt caaaaagcat
     6361 tatagcaaga gctagtgtta tagctaaaga aaagggtttg gcaaaattaa aattcagtgt
     6421 ttttgctgat cttgagcaag atgccttgcc tttgccaaat gttgtaccac aaaagggtaa
     6481 tgaggtggtt ttaaattttc tttatgatag aggtttagtg attgctccag atgaacaaac
     6541 ttataatgag cttgtattta gctttccaga aatttatttt actcatattg atatgctagg
     6601 agcacaactc atccgctctt catctcttgc tccaaagcgt agtgatttta gaaaattttg
     6661 tgccgataat gctgtgggaa ttttgatttt tgctttagag gataaggcaa agatagttga
     6721 ttgtcaagat tttagtgagc tttatgaatt aaccatatct aaaccaagca gtatacaagt
     6781 tcctttttat tctcgtatag gtggttataa aagtaatttt tttgatttta attcccaaga
     6841 agtgggtaat tattatagat attatgatgc tttaattaat attcctaagg taagccaatg
     6901 aaaaaagaat ttgaacaata ttttataaaa cttctaggta gtgaaaatgc ttattttgat
     6961 gatattcata agcgtgctta tagttatgat gctacaaaaa agcattattt gcccgatggg
     7021 gtgctgtttc caagaaacga ggaggatatt tctaaaatat taaaattttg taatgaaaat
     7081 aatatcatta tcattcctcg tggggcgggt tcgggtttta caggaggagc tttggctgtt
     7141 aatggaggtt tgattttaag ctttgaaaaa catatgaata aaattctaga aatcgatctt
     7201 gaaaatttag tcgcagtagt gcaaccaggt gtgattaata tacatttaca aagagaagtg
     7261 gctaagcatg gactttttta tccgcccgat cctgctagca tggagtattc tagcttagga
     7321 ggcaatgtaa gtgaaaatgc tggaggtatg agagctgcaa agtatggcat tactaaagat
     7381 tatgttatgg ctttaagggc tgtgttgcct aatggggaaa tcattcgtgc gggtaaacgc
     7441 accatcaaag atgttgcagg atataatctc gcaggtattt taatcgcgag tgagggttct
     7501 ttagcggttt taagtgagct taccttaaag cttattgtct tgcctaaatt caagaaaaca
     7561 gcttttggaa tttttccaag tgtaaaaagc gctatgaatg cagtttataa gagtcttgca
     7621 agtggggtta atcctgtatc tatggaattt ttagataatc ttagcattag agcagtagaa
     7681 agtaaattta acaaaggttt gcctgtggat gcgggagcta ttttgattgc tgatgtagat
     7741 ggcaatgtaa aagaagctat tgatgaagat ttgaaaattt taggagagca ttttttagac
     7801 gcaggagcaa gtcagtttaa aatagccaaa gatgagcaag aagcagcaga tatttggttt
     7861 gctagaagaa attgttctca aagtatagct atgtatggga ctttaaaatt aaatgaagat
     7921 attactgtcc caaggtcaaa acttcctgct ttacttgaag gtatagatga aatttctaaa
     7981 aaatatggtt ttaaaattcc ttgttttggt catactggtg atggaaatgt gcatactaat
     8041 attatggttc ctgataaaaa tgatgaagaa caagtaaaaa aaggctatga agcagtagaa
     8101 gaggtattta agcttactgt ggagcttgga ggaactttaa gtggagagca tggaatagga
     8161 ctttctaagg ctccttttat gaaattagct ttttctgatg ccgaaatgaa tttaatgaga
     8221 aatattaaaa aagcttttga cccaaataat attctcaatc cttttaaaat ggggctttaa
     8281 aaaggaaaag attgaagaga atttttgcta ttttatccaa tttgcgagat aaagaaattt
     8341 taaattatgc cgcagcgctt agtttttata ctattttatc tttgatacca attttgtttg
     8401 tgtgtttttc tgtttttacg caaatttcaa gttttaaggc ttattatgaa aaagccaagc
     8461 aaatcatttt tgctttttta atacctgcac agcaagatat agttgctgct tatcttgaca
     8521 catttttaaa taatagtgta aatttgggta tagtgggtct tatagcaatg acctttactt
     8581 ctttggcttt tttttcaggc tatgattttg taatcaatcg cattacaaaa agtgagccaa
     8641 aaggactttg gcaaagtatt agttcttact ggacgctttt aacccttgtc ccactaggct
     8701 taggacttag tttttatata tcgggtttga ttcagcaagc tttggatgat tataaaatag
     8761 gttttaattt ttttgaaatt ttgccttttg tgatcatttg gggtttgttt tttatatctt
     8821 attcaagttc tattcaaaaa ggaactctta aaagcttgat attcgtttct tttgcggcgg
     8881 gagctatttg gtatatagga aagaatttgt ttgtgtatta tatagtttat aacaaaactt
     8941 atgctagtgt ttatggttct ttttctacta tacttttttt ctttatttgg atttatattt
     9001 cttggattgt ttatcttttt gggattaaaa tttattattt tttaaatcat aatcatgata
     9061 aaggggataa aattcgcaaa aatacaaaaa agagctaaaa ttttataacg catagctatg
     9121 aaagaaagta tgagatagga tattaaagcc caagttggta ttttaatatt taaagcataa
     9181 aatttaagat taaaaaagtc aatcaataca ggatctaaaa gatttccatg tgctataaaa
     9241 tgcaaacata aaaccaaagg ataaaagact ataaaaattc cactcaaaat aatggctagg
     9301 aattgctgat agctgataag aggaaagaaa taaagcacag gagtaatcat acaaaaaaat
     9361 gtccatatat tcactaagat gatatttaag aaattgttaa ataattttga aaaatggtgc
     9421 aaatataaaa aaatataaaa aactcctagg caagaaaaga aaaatcctat actcaataaa
     9481 agcctaggat aaaggactat acaaagatat atacttataa aaagggtaaa aaagcttaga
     9541 attttgatat ttttacaaag cagataaaaa ccccaaagag ccatgattaa agaacgaaca
     9601 taagaaggca caaagcctat aagataagca taagcaaaaa gcaagataaa aataaaaatg
     9661 cttaaatcaa agcgtaagct tctataggga aaatatcttt tttgaaaaaa actatacaag
     9721 ggtgcgagta taaaaaatac caaagtaaaa agtaaaccta tatgataacc actgattgct
     9781 attaaatgag caacaccata atgattaaca tcgtttctaa gttctgagga gatgggtagg
     9841 gcaaaaaata aagctccgta aaattcttgt attttttcat ttgtatgttg gtttaaaaaa
     9901 taagaaatga gagtattgtt tttaagatat cctaatactt caaaaccata gctaggagca
     9961 taaaagcttt ttccaagata atccttaaag gaaatattat ttgtgattat ttttaaattc
    10021 aaaagctgat ttttgcttaa atttaaatcc ttaaagcttg tagtataaag gataaaatcc
    10081 tttgttttaa gttttaaaac ccagtatttt ttattgtttt tattatgttt tggataatac
    10141 tgtaaaagca aggcattttc tactagataa tgtttctttt ctttaaggtt taaaaaatga
    10201 ttatattcta aaaatatatt aaaaacaaaa acaataaagc caaataaaaa taaataacgg
    10261 aattctttaa ggtttagata taaagaattc caaaaagaca ttatttttta gaaaatttag
    10321 tcaaataaaa ccaaataatt ccaaccaata cgattaaaaa taaaggtgca atataaggat
    10381 aagagcttaa cttattaaaa attgcttcta tggcaaaacc aaatgcataa gcgctatatc
    10441 ctaaaagcac tgcccaaagt aaactagcaa aagtattgat gatgaaaaaa ttaataaatt
    10501 tatattttgc tatgcctgca gctatgggga taaaagtttt taagccatag acaaattttt
    10561 gagttataag caaaacgact ccatgttgtt tggttttcat catagcaagg gcaagttttc
    10621 ggcgatgatt tttaaaataa ggcataatat cttttttata gtattttcca agtataaaaa
    10681 gcaaggtaga acccaaagta ttagccacaa aagctatgct tatacataaa gccaaatcca
    10741 tttttccttg agagcttaaa actccagcgg ctaaaattcc taccattcca ccacctaaag
    10801 aatagaaaaa taaaactata tagccgtatt ttagtaaggt atctatcata tcttgcatat
    10861 tagctctctt atttggcgta ttctatggct cttagttcgc gtatgacatt taccttgatt
    10921 tctccagggt attgcatttt ttcttgaatt tcagcagcta tttctttggc taaaagcacg
    10981 ctttcatcat catttacaag ttttgcattt gcaatgacac gaatttctct tcccgcatta
    11041 atcgcataag catttttaat accttctttg cttttagcaa tctcttcaag ctcgcttact
    11101 cttcttaaga aagcttctaa gacttcgcgt ctagcacccg gtcttg
//
LOCUS       DARAII010000050        10997 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.050, whole genome shotgun sequence.
ACCESSION   DARAII010000050 DARAII010000000
VERSION     DARAII010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10997
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.050"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..359)
                     /gene="pheA"
                     /locus_tag="SB143_001078"
     CDS             complement(<1..359)
                     /gene="pheA"
                     /locus_tag="SB143_001078"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEF9749620.1"
                     /translation="MPNLEEFRNKIDAVDDKILELLNERMTYVKSIGEIKQTSGGAIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQIVAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANI"
     gene            complement(347..1114)
                     /locus_tag="SB143_001079"
     CDS             complement(347..1114)
                     /locus_tag="SB143_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEF9749621.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYVIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLKPCKVAAFGADEFVKSLENLGFKLDFV
                     NPSAVLVASYDDFKFKDFASMIEFARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRKQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKELKCQI"
     gene            complement(1116..2324)
                     /gene="lysA"
                     /locus_tag="SB143_001080"
     CDS             complement(1116..2324)
                     /gene="lysA"
                     /locus_tag="SB143_001080"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEF9749622.1"
                     /translation="MDYKKLKDEFQTPFYIYDFDFIKERFLKLKNAFKARKSQIFYAV
                     KANSNLSLLQMLVKLDSGFDCVSIGEVKRALKAGAKSYKIIFSGVGKTQEELRLALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVNAKTHPYISTGLNENKFGVEI
                     DLARKMYLYAKNSPHLEPIGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIELKF
                     FDIGGGLGVRYEKEDVEPDLYDYAQGILAQLHGLDVTIGMEPGRFLVANSGEFVCSVL
                     YEKHNKTKRFVIVDGAMNDLIRPSLYEAYHEILLPYNQGEESPCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            complement(2366..3424)
                     /locus_tag="SB143_001081"
     CDS             complement(2366..3424)
                     /locus_tag="SB143_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEF9749623.1"
                     /translation="MWIFFRFISGIYLKNFFIIFLSLLGFYCGIDLLLNFNDLPDAAN
                     LSLLYVIFLAFSAVTYVLPVSLIFALVLSLVSMIRANEFVSLYALGLSKNLVIIFPFL
                     WALFFCFVYVGLNFTPFAYANDYKRNILKNGTMLKQSGEVFLKFNNEFIYISKVNNGQ
                     STAQNIKIFNIKDLNLSSFIEAKSGIFEKKNWILKEGNLTLLPKEYELGNKGLNISEF
                     KELNTLEGFKPKIIEGVASDSDYSILDILESLELFKTQNISIESLKISLYKLVFMPFF
                     APFLMLIMYYFFPVIARFFNLAFVAFVAFVVTLLTWGMLFLLSRLSENGVILSELGIV
                     MPIVLLIFLGGFMFYKHR"
     gene            complement(3426..3968)
                     /locus_tag="SB143_001082"
     CDS             complement(3426..3968)
                     /locus_tag="SB143_001082"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEF9749624.1"
                     /translation="MILVVGLGNIGKEYEDTRHNVGFMLIDLLLKEGNFTNLTNSKFK
                     GELFKMGSSLLLKPHTYMNNSGLSVKAVNDFYKCERIIVVHDDIDINLGTLRFKRGGS
                     SGGHNGLKSIDNLCGSDYERVRIGVGKGENVISHVLGKFRAEEELILSKVLEHSKKAL
                     LELIRNDDLSAISSKYSLKA"
     gene            complement(3965..4501)
                     /locus_tag="SB143_001083"
     CDS             complement(3965..4501)
                     /locus_tag="SB143_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEF9749625.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            4635..4973
                     /locus_tag="SB143_001084"
     CDS             4635..4973
                     /locus_tag="SB143_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEF9749626.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            4977..5291
                     /locus_tag="SB143_001085"
     CDS             4977..5291
                     /locus_tag="SB143_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEF9749627.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKCFLKLFLIAVIITCTAGLKF
                     LS"
     gene            5301..5906
                     /locus_tag="SB143_001086"
     CDS             5301..5906
                     /locus_tag="SB143_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEF9749628.1"
                     /translation="MQIYVSGIHTDVGKTHFSAVFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKSLDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(5893..7176)
                     /locus_tag="SB143_001087"
     CDS             complement(5893..7176)
                     /locus_tag="SB143_001087"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEF9749629.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYQAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFRKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            7243..8385
                     /locus_tag="SB143_001088"
     CDS             7243..8385
                     /locus_tag="SB143_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEF9749630.1"
                     /translation="MSLKNILETLEKNHNLRKLTSLKHEGNFVFKEGKKLLNLAGNDY
                     LNLSFCKSLKDEFLDNIKEQDLFFSSSSSRSLSGNFTIYEELESFLKSKFKEKEILHF
                     NSGYHLNISCIAALASIPNTLFLADKFIHASMIDGLKLGGAKFFRFYHNDMNHLENLI
                     QKHYDHYENIIILSEALFSMDGDFSDFNTLIAFKEKYPKIKLYIDEAHSVGCFDEEGL
                     GLVKALNLEEKVDFIVFTFGKALASMGACMICNNLYKSFFINKARAFIYSTALPPINI
                     AWTKFIFEKMSELKEKREKLQIIGNFFKNQLIEKSHQILGDAYIISLVLGENQKAIEL
                     AKKLEVNGIFAPAIKEPTVPKNTARIRFSLHAGLSKEDLKKVVELL"
     gene            8382..8993
                     /locus_tag="SB143_001089"
     CDS             8382..8993
                     /locus_tag="SB143_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEF9749631.1"
                     /translation="MKISNLIQNENSQELILVFGGFASHPSHFAHLKSDKNVVLVYDY
                     ENLDFKFDLNSFSKITLIAFSMGVCVASRVLKNIEFSQKIAINGTPFGIDKLKGIHPA
                     IFAKQIKKFDLTAFKKSLFKERENEAKDFIFKDEKDLKTELEKLFEFALKERNESFIW
                     DKIYSSNHDEIFPQNALKNTFSKLIFLDEPHFAFFHFKTWDEI"
     gene            8990..9676
                     /gene="bioC"
                     /locus_tag="SB143_001090"
     CDS             8990..9676
                     /gene="bioC"
                     /locus_tag="SB143_001090"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HEF9749632.1"
                     /translation="MNFLKAKDYQKHAKVQDLMGLKLCEILKNLEISHFKKVFEFGCG
                     RGEFSDKLSKIITFDAYLKNDILDYPDNLNVEIFDMNTLATQNLSKQKFDLITSNASL
                     QWLDLKQVLPTLANMLNKKGILLLSTFGEMNLKEIKQSTSLGLKYFSTKELEQIFKPY
                     FSDIKITEEIVNLEFQNALEVFRHLKLSGVNSLGFYRLNKQFLKEFEEKFQNKLTYHP
                     IFILCKKDTK"
     gene            9730..10479
                     /gene="modA"
                     /locus_tag="SB143_001091"
     CDS             9730..10479
                     /gene="modA"
                     /locus_tag="SB143_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEF9749633.1"
                     /translation="MKKLVLCFIVLFLSLNLNAQNLSVFVASSASKAMEEVKNEFLKS
                     HPNDNIDLVFGASGKYYQLLKQGREFDLFFSADTKYAQAIYEDQNALDKPKVYVLGIL
                     ALYSLDESLLEGGIEKLKDKANKIHHLSLANPKVAPYGVAAKEVLENLNLDKLFEDKI
                     VLGENISVPVLHVDSNNADLGIVAYSLVSSINHPKGKAILIDQKYFTPLKQSYVITKY
                     AKDKKLAFEFSDFISSQKAKEIFKKYGFDTP"
     gene            10476..10877
                     /locus_tag="SB143_001092"
     CDS             10476..10877
                     /locus_tag="SB143_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TOBE domain-containing protein"
                     /protein_id="HEF9749634.1"
                     /translation="MNILNGKIIELLNEGEIVIVKISIKEQIFKVLMLDLHSLQDLKI
                     GTKIQVLFKEHELGFTLPHSILSVENSFLARIKSIKKGKILYHIFFDFEGDEISSIIT
                     KEKALELKLEEGQEWLCFVKENDIILKAVYG"
     gene            10870..>10997
                     /locus_tag="SB143_001093"
     CDS             10870..>10997
                     /locus_tag="SB143_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEF9749635.1"
                     /translation="MDNDFLQTLYLTFKLAFITTFMLFFIGVFLAYLLSFVKFPFK"
BASE COUNT         3836 a         1822 c         1553 g         3786 t
ORIGIN      
        1 tcgatattag ccaaggctat ataacgactc atcgcaccaa aacgacttct tgctgcttga
       61 tgtgtataag ttccttcagg ccctaaataa gcaacaattt gaggcatttc taaattcctt
      121 gaaacagcaa aaatttcttg ataaattgcc tctatggcat tttgatccaa aagtcctaaa
      181 tttgcatttt ttaagcgatt gataatcgct ctttcacgtt caggacgata aatcgctcca
      241 ccacttgttt gcttgatctc tcctatactt ttaacataag tcattctttc atttaaaagt
      301 tctaaaattt tatcatcaac cgcatcgatt ttatttctaa attcttctaa atttggcatt
      361 ttagctcctt taaaaactca aaaacactag gataaactcc atcaagcaaa tccgtatcaa
      421 gcccttttgt gtcgcttatc tttccgctta aaaccagcaa ggttttcatg ccaagttctt
      481 ttgccttaag caagtctcct ctaaaatcat cactaatgat tttaatatct tcaaaatcga
      541 tttttgaatt ttgttttctt atcaaattta aagcttcttt ataaaaagca atgctaggct
      601 tacccacaac ctcgtattca aaatcaatag catttttaag catagccata atgctaccta
      661 caccaggata aggcctacca tcttttttat aaatgctagt ttcgtgcata gctataaacc
      721 taacttctct tctagcaaat tctatcatac tagcaaaatc tttaaattta aaatcatcat
      781 aactagctac aagcacagca ctaggattta caaaatcgag cttaaaacca agattttcaa
      841 gactttttac aaactcatct gcaccaaaag ccgcaacttt acaaggtttt aaaaggtgtt
      901 ttaaaacgct aaaaggatca atataagcat tttcttttat agccaatcct ttttgctgta
      961 atttttctaa aaaatcaagt ttttttgtat tgttagtaat gataacataa ggaagatttt
     1021 ttgcatttaa aaaatcgatc aattctttag cgccatggat taaagattta tcatgatcag
     1081 aaattaaagt cccttgaaca tctaaaaaaa acattttaag cctttaaaaa tttctcttct
     1141 aaagcgattt gatcttcaaa attttctctt tgacggatca atcttacctg tccttcttca
     1201 agggctaatt cgcaaacttt attacgagta ttgtaattac tactcatgct aaaaccataa
     1261 gctccagtat ttttaataac cattatatca ccactttgag tgctaggcaa agaccttgcc
     1321 ttggcaaaaa aatctccact ttcacaaatt ccacccacaa catcgcaagg actttcttct
     1381 ccttgattat aaggcagtaa aatttcatga taagcttcat acaaacttgg gcgaattaaa
     1441 tcattcatag ccccatctac tataacaaaa cgctttgttt tattgtgttt ttcataaagc
     1501 acagagcata caaattctcc actattggca accaaaaatc ttcctggctc cattcctata
     1561 gttacatcca gtccgtgtag ttgagcaagt attccttgtg cataatcata aagatcaggc
     1621 tctacatctt ctttttcata ccttactcca agtccaccgc ctatatcaaa gaatttaagc
     1681 tctatttgca aggccttaag ctctcttact aattttgcaa caatcgcagc cgcttcatgg
     1741 ataggcgaga tatctaataa ttgagaacct atatgaaaat gcactccaat aggctctaaa
     1801 tggggtgaat ttttagcata aagatacatt tttcttgcaa ggtcaatttc tacgccgaat
     1861 ttattttcat ttaaacctgt agaaatataa ggatgagttt tagcatttac atttggattg
     1921 acacggatac ttatccttgc ctttaaattt aactctttag ctacactttc taaaagcatc
     1981 atttcagctt cgctttcaag attgatatat aaaatatcgt attctaaagc aagtcttaat
     2041 tcttcttgag tttttcctac gccactaaaa attatcttat aagattttgc acctgctttt
     2101 aaagcgcgtt taacctctcc tatgcttaca caatcaaacc cgctgtcaag ctttacaagc
     2161 atttgtaaaa gacttaaatt tgagtttgct tttaccgcat aaaaaatttg agatttccta
     2221 gctttgaaag catttttaag ttttaaaaaa cgctctttaa taaaatcaaa atcataaata
     2281 taaaaagggg tttgaaattc atctttgagt tttttataat ccatttttca cctttatttt
     2341 taattttact atattaaagc ttaatttatc ggtgcttgta aaacataaaa ccacctaaaa
     2401 aaattaacaa aacaataggc ataacaatgc ctaattcact taaaatcaca ccattttcgc
     2461 tcaatcttga tagtaaaaat aacatacccc aagtaagcaa agtgactaca aaagctacaa
     2521 aagctacaaa agctaaatta aaaaatcttg caataactgg gaaaaaataa tacataataa
     2581 gcattaaaaa gggtgcaaaa aacggcataa atacaagctt ataaagacta attttaagcg
     2641 attctatgct gatattttgt gttttaaaaa gctccaaact ttcaagtata tctaagatag
     2701 aataatcact atcactagct accccttcga tgatcttagg cttaaaacct tcaagagtat
     2761 taagctcttt aaattcgctg atatttaacc ccttattgcc aagctcatat tctttaggaa
     2821 gtagggttaa atttccttct tttaaaatcc aatttttctt ttcaaaaata ccgctcttag
     2881 cttcgataaa agaacttaaa tttaaatcct taatattaaa aattttaata ttttgtgcgg
     2941 tactttgtcc attattaacc ttagaaatat aaataaattc gttattaaat tttaaaaaaa
     3001 cttcaccgct ttgttttagc atagtgccat tttttagaat atttctttta taatcatttg
     3061 cataagcaaa aggagtaaaa tttaacccca catacacaaa acaaaaaaat aaagcccaca
     3121 aaaaaggaaa tattatgacc aaatttttac taagccctaa agcataaagg cttacaaatt
     3181 cattagccct tatcatagaa accaaagaaa gcaccaaagc aaagattaaa gaaacaggca
     3241 agacataagt aacagcagaa aaagccaaaa aaatcacata aagcaagcta agatttgctg
     3301 catcgggtaa atcattgaaa tttaaaagca aatcaatacc acaataaaaa cccagtaaag
     3361 acagaaagat aataaaaaaa ttcttaagat aaattcctga aataaaacga aaaaatatcc
     3421 acatcttaag cctttaagct atactttgaa gatatggctg ataaatcatc attgcggata
     3481 agctcaagta aagctttttt agaatgctct aaaaccttac ttaaaattaa ctcttcttcg
     3541 gctctaaatt tacctaaaac atgagaaata acattctcac ccttgcccac tcctatacgc
     3601 actctttcat aatcacttcc gcatagatta tctatgcttt taagtccatt atgtcctccg
     3661 ctagaaccgc ctcttttaaa acgcaaagtg cctaaattga tatcgatatc atcatgaacg
     3721 actatgattc tttcacattt gtaaaaatca tttaccgctt ttacgcttaa tccagaatta
     3781 ttcatataag tatgaggttt aagaagtaaa gaagagccca ttttgaaaag ctctcctttg
     3841 aattttgagt ttgtgagatt tgtgaaattg ccttctttta aaagcaagtc aataagcata
     3901 aagccgacat tatggcgagt atcttcatac tctttgccta tattgccaag ccctacgact
     3961 aagatcatct agctttttct acgcccacta ccgctactct atcagcatct atcatagtta
     4021 ctcccgcagg aactacaata tcacgaacaa gtaaagcatc acccacatca agcttactta
     4081 catcaagttc gaagaaattt ggtaaatttt cagctgcaca ttttactttt aatcttcttt
     4141 ttgattggat taaaacacct ttatttttaa gacctatagc tgttcctgta attttaactg
     4201 gaaccatgta tttagaaatc acaccttttt gtgcaacttt taaatccaca tgtttaagtt
     4261 ctgcagttac aggatctttt tgataatcta caactacaac gcttaaagtt tgagaaccta
     4321 cttttacatc aaaaattaaa gtagtttttt tacgaacttc cttaataaac tcatttactt
     4381 taaaagcggc attgatgttt tctaatcctt ttccatagat gtttgcgatt agataaccat
     4441 ctctttttaa agctttagca gcttttctac cgatactctc tctaacgatg ccttctaaca
     4501 tcttttgtcc tttcttaaaa aatgagcttt gattatatct aattttggct tatggaaaag
     4561 taaatttata gcttctttta atttctttaa gatataattt gttttacaaa tattatgtta
     4621 atttaaggct tcatgtgaat gaaaaattca atattaatat agcttggttt ttaataatct
     4681 taggtggaat tatagaatgc ttttgggtaa gtggacttaa atattctaca gaaatttggc
     4741 agtatatttt aacagccatt ggggtttgta tttcttttac ttgcttttta aaagcttgtg
     4801 aaagacttga agtaagtatt acttatagtg tttttgtagg catcggcact attggggtgg
     4861 ttttaaatga aatgtttatt tttaacgaag ctgtttctat aattaaactt gtgcttatag
     4921 caattttact tttaagtatt atagccctta aatgggtaag caaggaagct taatctatgg
     4981 aatggtttta tttgttttta gctaccgcct gtgaaatttt tggcgtggtg atcatgaaag
     5041 aacttgtaag cactaaaaac aagctttacc ttttagcttt gatagtgtgt tttggatttt
     5101 cttttacttt tttaagctta agtatgcaaa atatcgctat gagcgttgct tatgctatat
     5161 ggacaggagc tggaaccgct ggtggggtaa tgataggagt gcttttttat aaagaaagta
     5221 aatgtttttt gaaacttttt ttaattgctg tgattattac ttgtacagcg ggtttaaaat
     5281 ttctttcttg aggatttttt gtgcaaattt atgtaagtgg aatacatact gatgtaggaa
     5341 aaacacattt tagcgcagtt ttttgtgcga attttaacta tgattatttt aaactcattc
     5401 aagcaggaac tccaacagat agtgagttta ttgcaaaatt tagcccaaaa acaaagattt
     5461 ttaaagaagg tatttttttg caaactccag cttctcctca tcttggaaaa atcaaagaaa
     5521 agcttgatta taaatcctta gatatcattt taccaaaaag caaaaaccta cttattgagc
     5581 ttgcgggtgg gcttttttct cctatggatg aaaattacac tatgattgat tttgtgaata
     5641 ttttcaaaca ccctacgatt ttggtagcaa aatactatct tggaagtatt aatcatatct
     5701 tgcttagcat tgaagcttta aagcaaagaa atatcaatct tttggccctt gtaatgatgg
     5761 gtaaaaaaga tatcttacaa gatgatttta taaaaaatta tgcaaaaatt cctataatca
     5821 atcttgattt ttttgatgaa aatagcattt taaataaaga ttttaaagag caaatgcaag
     5881 aaattttaca acttaaaatt ccttaaaaat ctgctctaaa ctctctagta cataaacgat
     5941 ttgttctttt gtgatgatgt aaggaggcat aaaataaatc gtatttgcta aaggtcttaa
     6001 aagcaaacct ttttctaagg ccttcctaaa tacaaaaagt cctacgcgtt tatacttggt
     6061 gcttaaaata tcaaaagcac tgatcatccc gcaagttcta aaattaccca aaaagtcaaa
     6121 tttttcaagt cttgaaaatt cttttttgat aaactcgctt aaaatttgat tttttactaa
     6181 aatattttca tcctcaaaga tatctaaaac cgcatttgct gccgcgcaag ctaaggtatt
     6241 tcccgtatag ctatgagaat gtaaaaaagc cttttggctt tcataagtat cataaaaagc
     6301 attataaatt tcatctcttg taagcactac agaaagtggc ataaatccac ccgttatccc
     6361 ttttgaaagg cagataaaat cggggctttg tttgcattga tgtaaggcaa acaaagttcc
     6421 tgtgcgtcca aagcccactg caatttcatc aaaaatcact tgcactccaa atttatggca
     6481 aagctttatg gcctcatcaa taaaccctgc ttgatacata tgcatatttc ctgcacattg
     6541 caccaagggt tcaagtataa aagcacaaat ttcacttgca tttttttcta aaatatcttt
     6601 taaaatttca agctctttag tgtagtcttt gccttgtggc acaggcgtgc ttaaacactc
     6661 taaaagcaag gctttgtaag tatctttata aagcgcaaca tcgcccacac ttaaagcccc
     6721 taaggtttca ccatgataag aattgcttaa agataaaaat ttactttttt tcaccccctt
     6781 atttaaatga taatgaaaac tcatcttaag tgctacttca atagcacttg agccattatc
     6841 tgcataaaaa catttgttaa aattcctgcc tactttttcg caaagtcttg cagaaagctt
     6901 gatgatgggc tcatgtgtaa agcctgctaa gatcacatgc tctagctcat caacttgttt
     6961 tttaatggca tttgcgattt tttcattaca atgaccaaaa agattgaccc accaagaact
     7021 cacacaatcc atataagctt tatcatcaaa atcataaagc catacgcctt ttgctttttt
     7081 tataggaatt aaaggtaggg tttcgtgatc tttcatttgt gtgcaagggt gccaaatgtg
     7141 ttttaaatcg agatttttta agatttgatt ttgcattata acttcttttt taaaaatatt
     7201 ttggcaaaat aatactttaa atttctgaat tttaggaaaa aaatgagcct taaaaatatc
     7261 ttagaaaccc ttgaaaaaaa ccataatctt agaaaactta caagccttaa acatgaagga
     7321 aattttgttt ttaaagaggg taaaaagctt ttaaatttag cggggaatga ttatttaaat
     7381 ttaagctttt gcaaatcttt aaaagatgaa tttttagata atatcaaaga acaagactta
     7441 tttttttcaa gttcaagttc aagaagcttg agtggaaatt ttacaattta tgaagaatta
     7501 gaaagctttt taaaatccaa atttaaagaa aaagaaattt tacattttaa cagcggttat
     7561 catcttaata tctcttgtat agctgcactt gcaagcattc caaacacact ttttttagca
     7621 gataaattca tccatgcaag tatgattgat ggactaaaac ttggcggagc aaaatttttt
     7681 cgcttttatc ataacgatat gaatcattta gaaaatttaa ttcaaaaaca ttatgatcat
     7741 tatgaaaata tcatcatttt aagcgaagcg ttatttagca tggatggtga tttttctgat
     7801 tttaatacac tcattgcctt taaagaaaaa taccctaaaa tcaaacttta tatcgatgaa
     7861 gcacacagcg tgggttgctt tgatgaggag ggcttgggac ttgttaaagc tttaaatttg
     7921 gaagaaaagg ttgattttat agtttttacc tttggcaagg ctcttgcttc tatgggtgct
     7981 tgtatgattt gtaataatct ttataaaagc ttttttatca acaaggctag agcttttatt
     8041 tattctacag cattgcctcc tatcaatata gcttggacaa aatttatttt tgaaaaaatg
     8101 agcgaactaa aagaaaaaag agaaaaacta caaatcatag gcaatttttt taaaaatcaa
     8161 ctcatagaaa aaagtcatca aattttaggc gatgcttaca tcatctcctt ggttttagga
     8221 gaaaatcaaa aggctataga attagcaaaa aaacttgaag taaatggcat ttttgcaccc
     8281 gctataaaag aacctactgt gcctaaaaat acagctagaa ttcgtttttc tttgcatgca
     8341 ggacttagca aagaagactt aaagaaagtg gtagaacttt tatgaaaata agcaatttaa
     8401 ttcaaaatga aaactcacaa gaacttatct tggtatttgg tggttttgct tcacatccta
     8461 gtcattttgc acatttaaaa agcgataaaa atgtagtttt ggtttatgat tatgaaaatt
     8521 tagactttaa atttgattta aactcttttt ctaaaatcac tctcatagct ttttctatgg
     8581 gagtttgcgt ggcaagtaga gttttaaaaa atatagagtt ttcgcaaaaa atagctatca
     8641 atggcactcc ttttggtata gataaattaa aaggaattca tcctgcaatt tttgctaagc
     8701 aaattaaaaa atttgatctt acagctttta aaaaatcttt atttaaagag cgcgaaaatg
     8761 aagcaaaaga ttttatcttt aaagatgaaa aagatttaaa aaccgagctt gaaaaacttt
     8821 tcgaatttgc cttaaaagag cgtaatgaaa gctttatttg ggataaaatt tactcaagca
     8881 atcatgatga aatttttcct caaaatgctt taaaaaatac tttttcaaag cttatttttt
     8941 tagatgagcc gcattttgct ttttttcatt ttaaaacttg ggatgaaatt tgaatttttt
     9001 aaaagcaaaa gattatcaaa aacacgcaaa agtgcaagat ttaatgggct taaaactttg
     9061 tgaaatttta aaaaatttag aaatttcgca ttttaaaaaa gtgtttgaat ttggttgtgg
     9121 caggggcgaa tttagcgaca aactttcaaa aattatcact tttgatgcat atttaaaaaa
     9181 tgatattttg gattatcctg ataatcttaa tgtagaaatt tttgatatga ataccctagc
     9241 tacacagaat ttaagcaagc aaaaatttga tcttatcact tctaatgcaa gtttgcaatg
     9301 gcttgattta aagcaggttt tgcccacgct agcaaatatg ctaaataaaa aaggaatttt
     9361 acttctttct acttttggag aaatgaattt aaaagagatc aaacaaagca caagcttggg
     9421 tttaaaatat tttagcacaa aagaacttga acaaattttc aaaccctatt tttccgatat
     9481 taaaatcaca gaagaaattg taaatttgga atttcaaaac gctttagaag tttttagaca
     9541 tttaaaatta agcggagtaa attctttggg attttatcgc ttaaacaagc aattcttaaa
     9601 agaatttgaa gaaaaatttc aaaataaact cacttatcat cctattttta ttttatgcaa
     9661 aaaagataca aaataaaatt tcttatgtta taatacaaaa aatcaagatt atcgacaaag
     9721 gaaagtgcaa tgaaaaagct cgtgttatgt tttatagtgt tgtttttatc tttaaattta
     9781 aatgcacaaa atttaagtgt tttcgtagct tcttcggctt caaaagctat ggaagaggtc
     9841 aaaaatgaat ttttaaaatc acaccctaat gacaatatag atcttgtttt tggcgcttca
     9901 ggaaagtatt atcaactttt gaaacaaggg cgggaatttg atctattttt ttcagccgat
     9961 acaaaatacg cgcaagcaat ttatgaggat caaaacgctt tagataaacc aaaagtttat
    10021 gttttaggta tcttagccct atatagctta gatgaaagct tacttgaagg tgggatagaa
    10081 aagctaaaag ataaagcaaa taaaattcat cacctaagcc ttgcaaatcc aaaggttgct
    10141 ccttatggag tagctgctaa agaagtgctt gaaaatttaa atttagacaa actctttgaa
    10201 gataaaattg ttttaggtga aaatatctcc gtgcctgttt tacatgtcga tagcaataat
    10261 gcagatttgg gtattgtggc ttattctcta gtatcttcta tcaatcatcc taaaggcaaa
    10321 gctattttaa ttgatcaaaa atacttcact cctttaaaac aaagctatgt catcacaaaa
    10381 tacgctaaag ataaaaaatt agcctttgaa tttagcgatt ttatcagttc gcaaaaagca
    10441 aaagaaatct ttaaaaaata cggatttgac acaccttgaa tatcttaaat ggtaagatta
    10501 tagagctttt aaatgagggt gagattgtca tcgttaagat cagtattaaa gagcaaattt
    10561 ttaaagtttt aatgcttgat cttcattctt tgcaagatct taaaataggt acaaaaattc
    10621 aagtactttt caaagaacac gaacttggct ttactttacc ccattctatt ttaagtgtgg
    10681 aaaattcatt tctagcaagg attaaaagta tcaaaaaagg caaaattcta tatcatatct
    10741 tttttgattt tgagggtgat gaaatttcta gcattatcac caaagaaaaa gccttagagc
    10801 tcaaacttga agaaggacaa gaatggcttt gctttgtcaa ggaaaatgat atcattttaa
    10861 aggctgttta tggataatga ttttttacaa accctttatc ttacctttaa acttgcattt
    10921 atcaccacct ttatgctctt tttcatcgga gtatttttag cctatctttt aagctttgtg
    10981 aaatttcctt ttaaaag
//
LOCUS       DARAII010000051        10868 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.051, whole genome shotgun sequence.
ACCESSION   DARAII010000051 DARAII010000000
VERSION     DARAII010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10868)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10868)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10868
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.051"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..611)
                     /gene="pglA"
                     /locus_tag="SB143_001094"
     CDS             complement(<1..611)
                     /gene="pglA"
                     /locus_tag="SB143_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEF9749636.1"
                     /translation="MRVGFLTHAGASIYHFRLPIIKALIARGDEVFVIVPQDEYTEKL
                     KALNLNIVVYELSRASLNPLIVFKNFLHLKNVLKNLNLDLLQSGAHKSNTFGLIAAKY
                     AKIPYKIGLVEGLGSFYIDKGFKANLVRFVINTLYKLSFKIADSFIFVNQANADFMRN
                     LGLKENKICVIKSVGINLKKFFPMRVEQEAKKAFWQNLKIDEKP"
     gene            complement(623..2767)
                     /locus_tag="SB143_001095"
     CDS             complement(623..2767)
                     /locus_tag="SB143_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-binding protein"
                     /protein_id="HEF9749637.1"
                     /translation="MLKKEYFKNPTFILLAFIILAYVFSVLCRFYWIFWASEFNEYFF
                     NNELMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWFYKITPFSLESIFI
                     YISTFLSSLVVIPLILIANEYKRPLMGFVAALLASIANSYYNRTMSGYYDTDMLVIVL
                     AMMIVFFMIRLILKKDLLSLITLPLFVGIYLWWYPSSYTLNVALLGLFFIYTLVFHIK
                     EKTLYMAIILASITLSNIAWFYQSAIIVILFSLFVLQNKRFSFALLGILGLATLVFLI
                     LSGGIDPILYQLKFYIFRSDESANLAQGFMYFNVNQTIQEVESIDLSIFMQRISGSEL
                     VFFVSLIGFIFLVRKHKSMILALPMLALGFLALKSGLRFTIYAVPVLALGFGFLMSLL
                     QERKQKNNNTYWWANIGVFIFTFLSLIPMFYHINNYKAPTVFSQNEATKLDELKKIAQ
                     REDYVVTWWDYGYPIRYYSDVKTLADGGKHLGKDNFFPSFVLSKDQVAAANMARLSVE
                     YTEKSFYAPLNDILKNDLLQAMMKDYNQNNVDLFLASLSKPDFKINMPKTRDVYIYMP
                     ARMSLIFSTVASFSFVDLETGEINKPFTFSAAYPLDVKNGEIYLSNGIALSDDFRSFK
                     INNSTISVNSIIEINSIKQGEYKITPIDDMAQFYIFYLKDSTIPYAQFILMDKTMFNS
                     AYVQMFFLGNYDKNLYDLVINARDAKVFKLKI"
     gene            complement(2771..3868)
                     /locus_tag="SB143_001096"
     CDS             complement(2771..3868)
                     /locus_tag="SB143_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEF9749638.1"
                     /translation="MQKLAIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EISECKIHFLERSKPSENPILKFLKLPFLALKYKKLCQKLNIDTEFVFLNRPNYIALM
                     AKIFGNKTRLVINECTTPSVMYAKNNFNSLANKLLITLLYPRADLILPNSKGNLEDLL
                     CNFKIDKAKCEILYNAIDLEKIEQKALEDISLKDKFILSVGRLDEGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKDLNLEDKVLLLGFDNNPYKYMSKCEFFAFASVFE
                     GFSNVLIESLACDCAVVCTDHRSGARELFGDDEFGLLVEVNNENSMFMGLKTMLEDEN
                     LRKAYKKKAKDRALDFDKAKIARNALKYLLG"
     gene            complement(3856..4785)
                     /locus_tag="SB143_001097"
     CDS             complement(3856..4785)
                     /locus_tag="SB143_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEF9749639.1"
                     /translation="MPKLSVIVPTFNRSSLLQKAVQSILNQDFKDLEIIISDDNSSDD
                     TKSVVENLQKSDKRIKYFLNQNYKQGPNGNKNNGLDKASGEFITFLDDDDELLPYALG
                     VLMQKVDEGYSHVFGNCLIEKEGILSDEFSGRGLQKEDEISKKDFLMQRFSGEFFSVF
                     KASLLKNKRFNEEFYGNEATLWVNLYEEKSFYIHKAFRIYRVFRKDSVTLGASKNAHR
                     VHLGYLELAKILENELKASGDDDYRKTCASYYKMAAYYAKLSANYKALYHCLFKSLSI
                     KINAPALILLTLSIIPSKMIEKLSKIRVALCKN"
     gene            complement(4778..5854)
                     /locus_tag="SB143_001098"
     CDS             complement(4778..5854)
                     /locus_tag="SB143_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004291478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEF9749640.1"
                     /translation="MKITFIIATLNSGGAERVLATLANALCTQHEVSIIKFHVGDSFY
                     KLEENIKLITLEQFRFDTLYHKIASRFKKYLALRKALKENESDVFISFLDTTNIACIF
                     AKIGLKTPLIISEHSNEAYLKSKIWRFLRRLSYPFCDALTVLGSSDKIYYEKFVKRVK
                     LLPNPCHFSTEISLNEHFEKENLVLFIGRLDQNKNPQMFLKAIAHLDKKLQEDYEFVV
                     AGDGELRQELEYKAKSLGIRVKFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESLY
                     FEVCRISTSYYNGAKDLINDNKDGFLVGCDDEIALARKLELVLKDEQLRKNIVINAKK
                     RCEDFEISHIKKQWLELIDEVKNA"
     gene            complement(5851..7551)
                     /locus_tag="SB143_001099"
     CDS             complement(5851..7551)
                     /locus_tag="SB143_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEF9749641.1"
                     /translation="MLKKIFFILSKEDKKFLFSLLLFSVFISFIESFAISLVMPFITL
                     ASDFSYFDRNKYLIQLKDYLALPVFEIIVYFGVVLIVFYVLRALLNSYYFHLLARFSK
                     GRYHAIAYKVFAKFLNTDYENFTQKNQSEILKSITGEVYNLSTMISSFLLMMSEIFVV
                     LLLYTLMLLVNYKITLFLSLFMIINAFILIKVLSPIVKKAGLKREEAMKNFFEILNTN
                     LNNFKLIKLKTKEDGVLNLFKTQSEIFAKANITNESVSAMPRIYLEGVGFCVLVFIVV
                     FLVFKNQSDISGILATISIFVLALYRLMPSANRIITSYHDLLYYRSSLDIIYQILKQK
                     EESLGEEKIDFDKELRLENLSFGYKDKKNLFTCLNLSIKKGEKIAFIGESGCGKSTLV
                     DIIIGLLSPREGRVLVDKNELNMKNVKNYRQKIGYIPQNIYLFNDSIAKNISFGDEVD
                     EEKLQRVIKQANLEHFVKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLDPEILVL
                     DEATSALDTESEARIMDEIYKISKDKTMIIIAHRLSTITRCDSIYRLEHGKLFKEDKK
                     "
     gene            complement(7545..8531)
                     /gene="galE"
                     /locus_tag="SB143_001100"
     CDS             complement(7545..8531)
                     /gene="galE"
                     /locus_tag="SB143_001100"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEF9749642.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTNHEICVLDNLSKGSKIAIDDL
                     QNIREFKFFEQDLSDFEGVKALFEREKFDAVVHFAASIEVFESMQNPLKYYMNNTINT
                     TNLIQTCIQTGVGKFIFSSTAATYGEPTTPVVSENSPLAPINPYGRSKLMSEEVLRDA
                     NMAHPEFKYCILRYFNVAGACMDYKLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLENNESNIFNVGYGHGFSVKEVIDAMKRVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKFDDLDLICKSAFDWEKQC"
     gene            complement(8588..9379)
                     /locus_tag="SB143_001101"
     CDS             complement(8588..9379)
                     /locus_tag="SB143_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEF9749643.1"
                     /translation="MMKNEGYICIFDCESIPDTDLIRKTLAFEGEDLEVSLKALEWQK
                     EQSGSEFLPLPYHKIVSICAVISDHYGKFIKVNKIDGENEKEMIHNFFAFIEKYEPKL
                     VSFNGKNYDMPLLVLRALKYNIKAANYLDTQSDKWNNYKTRFSELKHCDLFESFGSTR
                     GLKLDTICAMADLPGKYDVHGDEVMKLYYEDKIEKIHEYCESDVLNTYMLFLKYELIK
                     GNVSDEDYAYFLNSMSEFLKAKKANRAYVEIFCKACENEISKMKI"
     gene            9444..10472
                     /gene="waaC"
                     /locus_tag="SB143_001102"
     CDS             9444..10472
                     /gene="waaC"
                     /locus_tag="SB143_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEF9749644.1"
                     /translation="MKIAIIRLSALGDIIQSAVVLQFIKKFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKIIQSLKILLEARKNNYNAVMDLQGLVKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLNIDYNENVFVRYLGLTSFMLNKYFDPKDLAFKEDVFS
                     VDEKLKQLLSEKMQLTKNKKNILIHVGSSEENKIYPKTKLALLCKLIIKEFPEIKIFL
                     GWGNLKEYEFAKEVIELGAISQDNIEIAPKFSLEELIVFTKSMDLIIGNDSGPTHLAF
                     ALNRPSITIFGATPSYRNAFKTNINKIIDTGKKITNAKHLDKSDFCISTIEEEDILKL
                     VKELFGDE"
     gene            10465..>10868
                     /locus_tag="SB143_001103"
     CDS             10465..>10868
                     /locus_tag="SB143_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lauroyl acyltransferase"
                     /protein_id="HEF9749645.1"
                     /translation="MNKDYLYLSAYYILKFLVYTMPHFILNFLAFCVSKIVFKLDKKH
                     RKIIDINLKLCFPYKDENERKELAFKIYNNFAKFGLDCIKNQNTSKEKILAKVVFDNE
                     EILTQALKEQKGVIFATAHYGNWELLSLAYAA"
BASE COUNT         3939 a         1940 c         1355 g         3634 t
ORIGIN      
        1 ggcttttcat caatttttaa attttgccaa aaagcttttt tagcttcttg ctccactctc
       61 ataggaaaga attttttaag attgataccc acggatttaa tcacgcaaat tttattttcc
      121 ttaagtccta aatttcgcat aaaatccgca ttagcttgat ttacaaagat gaaagaatca
      181 gcgattttaa aactaagttt ataaagagta ttgataacaa aacgcactaa atttgcttta
      241 aaacccttgt ctatataaaa agatccaagt ccctcaacaa gaccgatttt ataaggaatt
      301 ttggcatatt ttgcagctat taaaccaaag gtattgctct tatgagctcc actttgcaaa
      361 agatccaaat ttaagttttt taaaacattt ttaagatgta aaaaattttt aaaaacaatt
      421 aaaggattta aactcgctct tgaaagctca taaacaacga tatttaaatt taaagccttt
      481 aatttttcgg tatattcatc ttgtggcact atgacaaaaa cctcatctcc tcttgcaatc
      541 aaagctttaa ttataggcaa tctaaaatga tatatacttg ctcctgcgtg agttaaaaag
      601 cctactctca ttgtaaaaac ctttaaattt tgagtttaaa aacttttgca tctctagcat
      661 taatcactaa atcatacaaa tttttatcat aatttccaag gaaaaacatt tgcacataag
      721 cactattaaa catagtttta tccattaaaa taaactgagc ataaggtatg gtgctatctt
      781 taagataaaa aatataaaat tgagccatat catcaatagg agtgatttta tattcacctt
      841 gtttgataga attaatctct atgatactat ttacggatat agtactatta tttattttaa
      901 aacttctaaa atcatcactt aatgcaatac cattgctaag ataaatttct ccatttttaa
      961 catcaagtgg ataagctgca ctaaaagtaa aaggtttatt tatctcacct gtctccaaat
     1021 ccacaaaaga aaaactagcc acagttgaaa aaatcaaaga cattctagct ggcatataga
     1081 tatacacatc gcgtgttttt ggcatattga ttttaaaatc aggcttggaa agcgaagcta
     1141 aaaacaaatc cacattattt tgattataat ctttcatcat ggcttgtaaa agatcatttt
     1201 ttaaaatatc atttaaaggg gcgtaaaaac ttttttctgt gtattctaca ctaagtcttg
     1261 ccatatttgc agcagccact tgatctttac ttagaacaaa agatgggaaa aaattatcct
     1321 tgcctaaatg cttaccccca tcagccaaag ttttaacatc gctgtaatac ctaataggat
     1381 atccataatc ccaccaagtt actacataat cttctctttg tgcaattttt ttaagctcat
     1441 ctaatttcgt agcctcattt tgagaaaaaa cagttggtgc tttataattg ttgatatgat
     1501 agaacatagg aattaaactt aaaaaagtaa aaataaaaac gcctatattg gcccaccaat
     1561 aggtattatt gtttttttgt tttctttctt gcaaaagact cattaaaaaa ccaaatccaa
     1621 gtgctaaaac aggtactgca taaatagtaa aacgaagtcc actcttaagt gctaaaaatc
     1681 ctaaagctaa catcggcaaa gccaaaatca tacttttatg ttttctaaca aggaaaataa
     1741 agccgattaa agatacaaaa aatacaagct cgcttccgct aatcctttgc ataaaaatac
     1801 ttaaatctat actttctacc tcttgtatgg tttgatttac attaaaatac ataaaacctt
     1861 gagccaaatt tgcactctca tcacttctaa aaatataaaa tttaagttga tagagtatag
     1921 gatcaattcc accgcttagt atcaaaaata ccaaagttgc caaacctaaa attccaagca
     1981 aagcaaagct aaaacgctta ttttgcaaaa caaaaagact aaaaagtatg acaatgatgg
     2041 cgctttgata aaaccaagct atatttgaaa gtgtgataga agctaggata atagccatat
     2101 aaagtgtttt ttcttttata tgaaaaacca aggtataaat aaagaaaagt cctagtaaag
     2161 caacatttaa agtatagctt gatggatacc accaaagata aattcctaca aacaaaggca
     2221 gtgttattaa agataataaa tcttttttca aaatcagcct tatcataaag aaaactatca
     2281 tcattgcaag aactataaca agcatatcag tatcataata tccgctcatc gtgcgattat
     2341 aatagctatt agctatactg gctagcaatg ctgcaacaaa ccccattaaa gggcgtttgt
     2401 attcattagc aatcaaaatc aaaggtataa ccaccaaaga agataaaaaa gtactgatat
     2461 atataaaaat gctttctaaa gaaaaaggag ttattttata aaaccaatat gtgagcgttg
     2521 aaagcgaaga accataataa ctcaaatcat taggttgatg aaaacccgct atcatatctc
     2581 ttgcaccctc tgcaaaagca tatccatcat ttgagataat cataagctcg ttattgaaaa
     2641 aatattcatt aaactcactt gcccaaaaaa tccaataaaa cctacataaa acactaaaga
     2701 catacgctaa aattataaaa gccaataaaa taaaagttgg gtttttaaag tattcttttt
     2761 ttaacatatc ttatcctaat aaatatttta aagcattgcg tgcgattttt gctttatcaa
     2821 aatcaagagc cctatccttg gcctttttct tataagcttt tcttaaattt tcatcctcga
     2881 gcattgtttt taagcccata aacatagaat tttcattatt tacttctact aaaagtccaa
     2941 attcatcatc tccaaaaagc tctcttgcac cacttctatg atcagtgcaa accaccgcac
     3001 agtcacaagc tagactttcg attaaaacat ttgaaaaacc ctcaaacaca gaagcaaaag
     3061 caaaaaattc acacttagac atatatttgt aaggattatt atcaaagccc aaaagcaaaa
     3121 ctttatcttc taaattcaag tctttaatca aagccaaaag ctcatctttt agcactccct
     3181 cgcctaaaat cacaagcttt aaatctgttt ttaatctcgc ataagcacgg ataagcaagg
     3241 catgattttt accctcatca agccttccca cgcttaaaat aaatttatcc tttaagctta
     3301 tatcttcaag tgctttttgt tctatttttt ccaaatctat agcattgtat aaaatttcac
     3361 attttgcttt gtcaatttta aaattacaca ataaatcttc taaatttccc ttagaattag
     3421 gcaaaatcaa atcagccctt gggtaaagca aagtaatcaa aagtttattg gctaaagaat
     3481 tgaaattgtt tttagcatac atcacgcttg gagtggtaca ttcgttgatt acaaggcgag
     3541 ttttgttgcc aaatattttt gccatcaatg caatataatt aggcctattt aaaaaaacaa
     3601 attctgtatc gatatttaat ttttggcaaa gttttttata ttttaaagct aaaaaaggaa
     3661 gttttaaaaa ttttaaaata ggattttcac taggttttga acgctctaaa aaatggattt
     3721 tgcattcaga aatttcataa gaaattttat cattcattaa aatcaaatgc acttcaaatt
     3781 tcaaacttaa aatcggaagt aaagttgcca ctactctttc agcaccccca cttcctaaag
     3841 aataaataaa aatcgctaat ttttgcataa agccacccga atttttgata gtttttcaat
     3901 cattttactt ggaattatac ttaaagtaag taatatcaaa gcaggagcat tgattttaat
     3961 gctcaaactt ttaaacaaac aatgataaag tgctttataa tttgcactta attttgcata
     4021 atacgctgcc attttataat aactcgcaca agtttttcta taatcatcat ccccagaagc
     4081 ttttaactca ttttctaaaa ttttcgcaag ctctaaatac cccaaatgca ccctatgagc
     4141 atttttactc gctcctagcg tgacactatc ttttctaaaa acacgataaa ttctaaaagc
     4201 tttatggata taaaaacttt tttcttcgta taaattcacc caaagcgtgg cttcgttgcc
     4261 ataaaattcc tcgttaaaac gcttattttt aagcaaagaa gccttaaaaa cagaaaaaaa
     4321 ttccccacta aaacgctgca ttaaaaaatc tttcttagaa atttcatcct ctttttgcaa
     4381 acctctaccg ctaaactcat cacttaaaat tccttctttt tctataaggc aatttccaaa
     4441 aacatgagaa taaccctcat ctactttttg cattaaaaca cccaaagcat agggtaaaag
     4501 ctcatcatca tcatctaaaa aggttataaa ttcaccactt gctttatcca agccattgtt
     4561 tttattgcca ttagggcctt gtttgtaatt ttgatttaaa aaatacttaa tgcgtttatc
     4621 acttttttgc aaattctcta caacgctttt agtatcatca ctagaattat catcgcttat
     4681 aatgatttct aagtctttaa agtcttgatt taagatactc tgaactgcct tttgaagtaa
     4741 tgaagaacga ttaaaagtag gaactataac agaaagttta ggcattttta acctcatcaa
     4801 taagctcaag ccattgcttt ttaatatgag aaatttcaaa atcttcacat ctttttttag
     4861 catttataac gatatttttt cttagttgct catcttttaa tacaagctca agctttctag
     4921 ccaaagctat ttcatcatca caacccacta aaaatccatc cttattatcg ttaattaagt
     4981 ccttagctcc attataataa gaagttgaaa ttctacacac ttcaaaatac aaactctcga
     5041 tcaaaaccgt tggcaaaccc tcaacaaaag aacaaagaca aagtacttta gccttttcat
     5101 agagcgcttt tacattttca acacgcccta aaaacttcac tcttatgcct aaagattttg
     5161 ccttatattc aagctcttgt cttaattccc catcaccagc cacaacaaat tcataatcct
     5221 cttgcaattt tttatctaaa tgcgctatgg cttttaaaaa catttgaggg tttttatttt
     5281 gatctaaacg acctataaaa agcaccaaat tttctttttc aaaatgctca tttaaagaaa
     5341 tttctgtgct aaaatgacaa ggattaggca aaagttttac cctttttaca aatttttcat
     5401 aataaatttt atcactactt ccaagcacgg tcaaagcatc gcaaaaagga taactcaagc
     5461 gtcttaaaaa acgccaaatt ttagatttta aataagcttc attactatgt tcgcttatga
     5521 ttaatggggt ttttaatcct atcttagcaa aaatacaagc aatatttgtc gtatctaaaa
     5581 aagagataaa aacatcgctt tcattttctt ttaaagcttt tcttaatgcc agatattttt
     5641 taaaacggct tgcgatttta tgatataaag tgtcaaatct aaattgctct aaagttataa
     5701 gtttgatatt ttcttcaagt ttataaaaag aatcgcccac atgaaatttg atgatactta
     5761 cttcatgctg agtgcaaagc gcatttgcta aagtcgctaa aacacgctca gcacctcctg
     5821 aatttaaagt ggctatgata aaagttattt tcacttttta tcctccttaa aaagtttgcc
     5881 atgttctaaa cgatagatgc tatcacaacg cgtgatagtt gaaagacggt gcgcaataat
     5941 aatcatggtt ttgtctttag aaatcttata aatttcatcc ataatccttg cttcgctttc
     6001 agtatcaagc gcagaagtag cctcatcaag aactagaatt tcaggatcta ggtacaaagc
     6061 tcttgcgatg gctatgcgtt gcttttgtcc accgcttaaa ttactcccac catcgcctac
     6121 ttttgtttgc actccttggg gtaaattttt cacaaaatgt tctaaattag cttgcttaat
     6181 caccctttga agtttttctt catctacttc atctccaaag ctgatatttt tagcaatgct
     6241 gtcattaaaa agatagatat tttgcgggat ataacctatt ttttggcgat aattcttaac
     6301 atttttcata tttaattcat ttttatctac aagcacccta ccctctctag gacttaaaag
     6361 tcctatgatt atatccacta aagtgctttt tccacaacca ctttctccta taaatgcgat
     6421 cttttcgcct ttttttatac ttaaatttaa acaagtaaat aaattctttt tgtctttata
     6481 tccaaaactt aaattttcta gtcttaattc tttatcaaaa tcaatttttt cttcacccaa
     6541 actctcttct ttttgcttta aaatttgata aataatatct aaagaagagc gataataaag
     6601 taaatcatga tagcttgtaa tgatacgatt tgcacttggc atcaagcgat aaagcgctaa
     6661 aacaaaaatg gaaatagtcg ctaaaattcc ggatatatcg ctttgatttt taaatactaa
     6721 aaaaaccact ataaaaacaa gtacacaaaa gccaacccct tcaagataaa ttcttggcat
     6781 ggcacttacg ctttcattgg tgatatttgc cttagcaaaa atctcgcttt gagttttaaa
     6841 aagatttaaa acgccatctt ctttggtttt gagctttatt aatttaaaat tatttaaatt
     6901 tgtattaaga atttcaaaaa aattcttcat cgcttcttcg cgtttaagac ctgctttttt
     6961 aacgatagga ctaagaactt tgatcaagat aaaagcattt ataatcataa aaagacttaa
     7021 aaataaagtg attttataat ttactaaaag catgagagtg taaagtaaaa gcacgacaaa
     7081 aatttcactc atcatcagca aaaatgatga aatcatagtg cttagattgt aaacttctcc
     7141 ggtaatagac tttagaattt cggattgatt tttttgagta aaattttcat aatctgtatt
     7201 taaaaatttt gcaaaaactt tataagcgat agcatgatac ctaccctttg aaaagcgggc
     7261 taagaggtga aaataataac tatttaacaa agcgcgcaaa acataaaaga caataagcac
     7321 aacaccaaaa taaactataa tctcaaaaac aggtaaagca agatagtctt taagctggat
     7381 taaatactta tttctatcaa aataagaaaa atcactagcc aaagtaataa aaggcatcac
     7441 taaagaaata gcaaaacttt ctataaaaga aataaaaacc gaaaaaagca gtaaagagaa
     7501 taaaaatttt ttatcctctt tactcaaaat aaaaaatatt ttttttagca ctgcttttcc
     7561 caatcaaatg cagatttgca aataagatcc aaatcatcaa atttaggctg ccaagaagta
     7621 agatttctaa tcttgcttgc atcagaaatc aaaactgaag gatcacctgc acggcgtggg
     7681 gcaagctcga ctttaaaatc caccccactt actcttttca tcgcatcaat aacctctttt
     7741 acactaaaac catgaccata gcccacatta aaaatattgc tttcattatt ttctagataa
     7801 tccaatgccg ccaaatgagc acttgaaata tcatctacat ggataaaatc tcttatacaa
     7861 gtgccatctt ttgtatcata atcatcacca aatataaaaa gcttatcgcg ttttcctgct
     7921 gcgcattctg ctgctacttt gataagcaaa gtcgctttag gatagcgctg tcctaattta
     7981 taatccatac aagcacctgc aacattaaaa tatcttaaaa tacagtattt aaattcagga
     8041 tgagccatat ttgcatcacg caaaacctct tcactcataa gcttgctgcg tccataagga
     8101 ttgataggtg ctaaaggact attctcgctt acaacagggg ttgtaggttc gccataagta
     8161 gctgctgtag aagaaaagat aaatttaccc acccctgttt ggatacaagt ttggattaaa
     8221 ttggttgtat taatcgtgtt attcatatag tattttaaag gattttgcat gctttcaaac
     8281 acttcaatac tcgctgcaaa atgcaccact gcatcaaatt tttccctttc aaaaagtgct
     8341 tttacgcctt caaaatcact taaatcttgc tcaaaaaatt taaattctct tatattttgc
     8401 aaatcatcaa tagcaatttt agaaccctta gaaagattat ctaaaacgca aatttcatga
     8461 tttgttttta aaaactgcct taaagtatga gagccgatgt aacctgcacc accactaata
     8521 agaattttca ttttttacct cgatgattta aaattaaaaa tcaattttaa tatatttatt
     8581 ttaacgatta aattttcatc ttagaaattt cattttcaca agctttacaa aaaatttcca
     8641 cataggcacg atttgctttt tttgctttta aaaattcact catagaattt aaaaaataag
     8701 cataatcctc atcgcttaca ttacccttga tcaattcgta ttttaaaaaa agcatatagg
     8761 tgtttaaaac atcactttca caatactcgt gaattttttc aatcttatct tcataataaa
     8821 gcttcatcac ctcatcgcca tgcacatcgt atttacctgg taaatctgcc atagcacaaa
     8881 tcgtatcaag ctttaaaccc cttgtcgaac caaaactttc aaacaaatca caatgtttta
     8941 attctgaaaa tctagtttta taattattcc acttatcact ttgtgtatca agataattag
     9001 ccgctttgat attgtatttt aaagccctta aaacaagtaa aggcatatca taatttttac
     9061 cattaaaact gactaatttc ggctcgtatt tttcaatgaa agcaaaaaaa ttatggatca
     9121 tttctttttc attttctcca tcgattttat ttacttttat aaattttcca taatgatcgc
     9181 taataactgc gcaaatgctt acgatcttat gataaggcaa gggtaaaaac tcacttccgc
     9241 tttgctcttt ttgccactct agcgctttta agcttacttc taaatcttct ccttcaaaag
     9301 ccaaagtttt gcgaattaaa tccgtatctg ggatgctttc acaatcaaaa atgcaaatat
     9361 aaccttcatt tttcatcatt tttaaccttt tttcaaataa ttttgctaaa atcatagcaa
     9421 aaatttaaaa attttaggtt ttaatgaaaa tagcaatcat tcgtttatca gcccttgggg
     9481 atattatcca aagtgctgtg gttttacaat ttatcaaaaa atttaaaaaa gatatagaaa
     9541 ttcattggtt tgtggatgaa aaatttgaag gcatactcaa aaatcatccc ctaatcgata
     9601 aactttatgc tttgcctcta aaggacaaaa aaatcattca aagtttaaaa atacttttag
     9661 aggctagaaa aaataattat aatgcggtta tggatcttca agggcttgta aaatcggcta
     9721 ttgtgagtag aattttaagt agaaataatt ttggttttga taaaaacagc cttaaagaaa
     9781 gctttgcgca taatttttac aaccaaaaat taaacataga ttataatgaa aatgtttttg
     9841 taagatatct gggtctaact tctttcatgc tgaataagta ttttgatcct aaagatctag
     9901 cttttaaaga agatgttttt agtgtggatg aaaaattaaa acaactctta agcgaaaaaa
     9961 tgcaacttac aaaaaataaa aaaaacatac tcatccatgt gggatcaagt gaagaaaata
    10021 aaatctatcc taaaaccaag cttgcactac tttgcaaact catcatcaaa gaatttcctg
    10081 aaataaaaat tttcttaggc tggggcaatc ttaaagaata tgaatttgct aaagaagtca
    10141 tagagctagg cgctataagt caagacaata tagaaatagc tcctaaattt agtcttgaag
    10201 agcttatagt ttttacaaaa tctatggatt taatcatagg aaatgatagc ggcccaacgc
    10261 atctagcttt tgctttaaat aggccttcta taaccatctt tggtgcaacg ccaagctacc
    10321 gcaatgcttt taaaaccaat attaataaaa ttatcgatac aggtaaaaaa atcacaaatg
    10381 caaaacatct tgataaaagc gacttttgta taagtactat cgaagaagag gatatcttaa
    10441 aacttgtcaa ggaacttttc ggagatgaat aaagattatc tttaccttag tgcttattat
    10501 atacttaaat ttttagtcta tactatgcct cattttattt taaatttcct tgctttttgt
    10561 gtttcaaaga tcgtttttaa actcgataaa aaacatagaa aaatcataga tataaattta
    10621 aaactttgct ttccctataa agatgaaaat gaaagaaaag aacttgcttt taaaatttat
    10681 aataattttg ccaaatttgg attagattgc attaaaaacc aaaacacaag taaagaaaaa
    10741 attttagcta aagtcgtctt tgacaatgaa gaaattttaa cccaagcctt aaaggagcaa
    10801 aaaggggtga ttttcgctac tgctcattat ggaaattggg agcttttaag tcttgcttat
    10861 gctgctaa
//
LOCUS       DARAII010000052        10847 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.052, whole genome shotgun sequence.
ACCESSION   DARAII010000052 DARAII010000000
VERSION     DARAII010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10847
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.052"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(45..275)
                     /locus_tag="SB143_001104"
     CDS             complement(45..275)
                     /locus_tag="SB143_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEF9749646.1"
                     /translation="MYLKCFYFFFVRIFNFYKEGFKNLTLGKTLWKIIFIKLFIMLIV
                     LKLFVFDVNFNSIFKNDNEKSNFVIENLIKEK"
     gene            675..2342
                     /locus_tag="SB143_001105"
     CDS             675..2342
                     /locus_tag="SB143_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEF9749647.1"
                     /translation="MWQQIYDPFNSIWLSALFAFLPILCFLACLVFFKLKGYQAGFLT
                     VVLASVIALFVYDMPWNLVGASFVQGFTNGMWPIAWIIIAAIFLYKLSIKSGSFEIIK
                     KSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAAGLCLI
                     ANTAPVAFGAVGIPIIAMANLVGVEAHSVSAMVGRMLVPLSLTIPFFIVFLMDGLKGV
                     KETFPAILVAALSFTATQFWSSNHLGAELPDIISAIVSLAVTTIFLKFWKPKNIFRLD
                     GETHFSEDNTLNFGDVLKAWTPFILLIVCIIIWTQPWFKAIFDKDGFLSYTSISLQFS
                     NLTSGILSPSITGIGEAKPLSLGLGIDLINGKSVAQAGTAILLAAFLTIAILRIKAED
                     AAECFWATLKEMAIPCLTIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFAFFSPIIGW
                     IGVFLTGSDTSANLLFGTLQQVSAQKLGVSEALFLAANSVGGVVGKMISPQSIAIACA
                     AVGLVGKESDLFKFTLKYSIAFIILIGIWTCIIAFFLQGIIPEVVAK"
     gene            2495..3232
                     /locus_tag="SB143_001106"
     CDS             2495..3232
                     /locus_tag="SB143_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEF9749648.1"
                     /translation="MKKVYFYATCLGTAAMQESVLNGIKLLRREGVEVIFKKNQTCCA
                     QPSFNSGYFNESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKDRPEFSRVK
                     DFSSRVIELSQYLDEVLNVNYEDKGEPIKVTWHSNCHALRVQKSIQASKNLIRKLKNV
                     ELVELQYEEECCGFGGTFSVKEPEISNAMVRNKIKDIQNTGVKYLISGDGGCLLNIDG
                     TMKRMGLDVKGIHLYEFLFKRLEGERL"
     gene            3229..4668
                     /locus_tag="SB143_001107"
     CDS             3229..4668
                     /locus_tag="SB143_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEF9749649.1"
                     /translation="MSQKIPHEEIVHIKLNDIQMRENLMTAMHTLQKNRLGVIDARFR
                     DWQGLRAKAKQAKNNALMSLKDRLLEFEKNATKNGIQVHWASSDKDACEIVYEIMREK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGQIFKDKLGAKLENDEPESLNAIARDHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGVEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRTKMLAHKDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GENPPMGAKNIHHNAMEAFAFKQFKKAATKGERWRFALSKAHYFNWFVQNLSGALPVI
                     KKWYAFKELPQIKKDLYKEIQAIEGVIYE"
     gene            4661..5317
                     /locus_tag="SB143_001108"
     CDS             4661..5317
                     /locus_tag="SB143_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEF9749650.1"
                     /translation="MSKTNEISNKSKEKILSTLNEAYEAKDFTYQASIDPVEHIQTKE
                     DALAEMKQKMSDNKYIVENATKETLEEKINEIITKYNYKKMIYGTDLGLDLNKIQAEE
                     KICFDKEIENLRYEVFHSDFSIVHARAGVSSHGVALIPSSKGQPRMLSLAPKLCIVLL
                     KKEDIVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIVIY
                     "
     gene            5540..6229
                     /locus_tag="SB143_001109"
     CDS             5540..6229
                     /locus_tag="SB143_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEF9749651.1"
                     /translation="MDKLIPAWDEKYSINDEKIDAQHQKLFELAAKIENAVYKFVQRD
                     ELKEILTELFNYMKDHFSNEEDYMQEISYPYLNEHKIMHKNIIHDMSHLIQNIKTTND
                     LKEKLYTIMSDWLLEHILHHDVMIGNWLSEQLLAKQEEELEKLQQEDLQQEKQYENNP
                     NPSPPQIKKEYDFIYSCPCRTNHFLSYIEHLDIICHKKQLRCKKCQKNLFYVRSEIKT
                     EKRNNDVSKVG"
     gene            6210..6821
                     /locus_tag="SB143_001110"
     CDS             6210..6821
                     /locus_tag="SB143_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEF9749652.1"
                     /translation="MFPKWDDNYSVHNAKIDEQHKKLFELAGKVEFMFDRPVYKDDIK
                     ALLADFFNYMKDHFNDEEKYMKLIGYPGLEEHKKIHKEIIQSMIDLIKNIKSTNDLKE
                     KLYTVSKKWLLEHILYEDMKVEQYRRSSLSSEDDSEVSFEEVKEEKDDETALYFYTCE
                     CVGQIHDVPFGIHQKIQLKGAKFKCKKCKMAIQFYKKHSESFE"
     gene            6867..7052
                     /locus_tag="SB143_001111"
     CDS             6867..7052
                     /locus_tag="SB143_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749653.1"
                     /translation="MDKKIKYYISNKTKYSYPILTKDIQCSNCKNFYSIEFASNLKKI
                     EKECPSCKTKMDIKLKD"
     gene            complement(7049..8080)
                     /locus_tag="SB143_001112"
     CDS             complement(7049..8080)
                     /locus_tag="SB143_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEF9749654.1"
                     /translation="MKKNIVFFEVRGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKNEIYNYVKENFDGYVSRINPGNLKEENEYFDMLRKLCQEGLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGEVKGDILPLDTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAQYRYDKPEDWQNLVDMFLGEL
                     PKVRAKLGNYDLPLIWTADFILDNDEKGNDKYVLGEINCSCVGFTSHLELADEVAQNI
                     INIVSKAKN"
     gene            complement(8188..9084)
                     /gene="sppA"
                     /locus_tag="SB143_001113"
     CDS             complement(8188..9084)
                     /gene="sppA"
                     /locus_tag="SB143_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEF9749655.1"
                     /translation="MQILKSFFKGLGSVIKFINTYFKTFVLLLIVIWLLVPSSNSSSS
                     YANLERIDLKGEILDSSELLEKIISAKNNDNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKTKKPVIAYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSELAKKIGI
                     KEQTIQAGEFKSAGTFTRAWSEEEREFLQNLIDESYDLFSEFVAKERDLELDKRKDWA
                     NARVFLAQNAKDLGLIDELSNYENAKKELQELAKVLNPVWKEEGRIDRFLNRLESQSS
                     NFLGKVISDTVLRLNANFLELK"
     gene            complement(9072..10301)
                     /locus_tag="SB143_001114"
     CDS             complement(9072..10301)
                     /locus_tag="SB143_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEF9749656.1"
                     /translation="MYIISAKYIFLCDEQFSILENKAFVFENEILELGELEELKKRYP
                     GAKLIKTSPNCVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSMLNEQAKE
                     ELILKNIQKMQKSGIGTIGEISSFGSDLNPCVRASQNGMRVVFFNEILGINEAQIQDK
                     KQEFLTRFEKSLKFKDEFFIPAISVHSAYSTHPELAKFAINLAKKQKLLISTHFLESK
                     AENAWLKEAKGGFKEWFKNFTPDPKPLYKASEFIQLFKGVRTLFTHCVYLKEMDLLDK
                     NLHSITHCAFSNRLLSQKTFDLKKALKSGLNIHLGTDGLSSNISLSILDEMRASLLVH
                     TDFDLLKLAPKLLQMATLYPAKALNLNLGEIKQGKMADFSVFELGECNKEQAPLQFIL
                     NAKEVQKLFIKGKECKF"
     gene            10395..>10847
                     /gene="aroQ"
                     /locus_tag="SB143_001115"
     CDS             10395..>10847
                     /gene="aroQ"
                     /locus_tag="SB143_001115"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEF9749657.1"
                     /translation="MKVMVIQGPNINMLGVREVRIYGAMKMEDIHTQMKMAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAISAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGSIVGFGPFGYHLALMGIIQICEQVKNLHAA"
BASE COUNT         3834 a         1723 c         1686 g         3604 t
ORIGIN      
        1 tgcaaactgc gctcttgacc aatccacact gctaagttcg ttcattattt ctccttaata
       61 agattttcta tgacaaaatt acttttttca ttatcatttt taaaaataga attgaaattt
      121 acgtcaaaaa caaaaagttt aagcacaata agcattataa aaagttttat aaaaataatt
      181 ttccataaag tttttccaag ggtaaggttt ttaaaccctt ctttataaaa gttaaaaatt
      241 cgcacaaaaa agaaataaaa acattttaga tacattaaat taaaccttaa attaaacctt
      301 ataaaaataa tgaaaaattt aaattggaaa aaagcttgaa attataatga aatttatgtt
      361 attaaatcct taaaacttgc ttttataatt gttaaaactt tagccggttt tgactataaa
      421 ttctaaaatt tggtatttaa ctaacaaaaa tattctagaa aatgacaaaa caaaaaagat
      481 tttactctca ttatagttat atttttatat tatatttata tttttatata ctctatatgt
      541 taccaaattg cacaaaatga tacataagaa gccttatgat ttttcttaaa ttttaatttc
      601 attatatata ttttaagaat ttgttagaat gaagagaaac tttaaataaa ataaaacaaa
      661 ggagaagaca cattatgtgg caacaaattt atgatccgtt taatagcatt tggctcagtg
      721 ccttatttgc ttttttacct attctttgct ttttagcttg tttggtattt ttcaagttaa
      781 aaggttatca agcgggtttt ttaaccgtgg ttttggcaag cgttatagct ttatttgttt
      841 atgatatgcc ttggaattta gtaggtgcta gttttgtaca aggctttaca aatggtatgt
      901 ggcctatagc ttggattatt atcgcagcta tttttcttta caaactctct atcaaatcag
      961 gttcttttga aatcattaaa aaaagcgtga tgagcatcac tcctgatcac agaattcaag
     1021 tgattttgat aggtttttgt tttggttctt tcttagaagg tgctataggt tttggtggtc
     1081 cagtagctat cacagcagct cttttggtgg gacttggttt gcgtccttta caagcagcag
     1141 gactttgtct tatagccaat accgcacctg ttgcttttgg tgctgtgggg attcctatta
     1201 tcgctatggc aaatttagta ggagttgaag ctcattctgt ttctgctatg gtgggtagaa
     1261 tgcttgttcc acttagtctt actatacctt tttttatagt atttttaatg gatggtttaa
     1321 aaggggtaaa agaaactttc cctgctattt tagttgccgc attaagcttt acagcaacgc
     1381 aattttggag ctcaaatcac ttaggcgctg aacttcctga tattatttca gctattgtgt
     1441 ctttagcagt tacaactatc tttttaaaat tttggaaacc aaaaaatatt tttagactag
     1501 atggagaaac tcattttagc gaagataata ccctaaattt tggtgatgtg ttaaaagctt
     1561 ggacaccttt tattttactt atagtttgta ttatcatttg gactcagcct tggtttaaag
     1621 ctatctttga taaagatggt tttttaagct atacaagcat tagcttgcaa tttagcaatc
     1681 ttacaagcgg tattttaagt ccttctatca caggtatagg cgaagctaaa cctctttctt
     1741 taggacttgg aatcgatctt atcaatggta aaagtgtagc tcaagcagga actgcgattt
     1801 tacttgcagc ttttttaacc atagctattt taagaataaa agctgaagat gctgctgaat
     1861 gtttttgggc aaccctaaaa gaaatggcta tcccttgtct tactataggt ttggttgtag
     1921 cctttgcttt tatctctaaa aatagtggta tgagtactac tttaggactt gcttttgctc
     1981 atacaggaga tgcttttgca ttcttttcgc ctattatagg ttggattgga gttttcctaa
     2041 caggatcaga tacaagtgct aacttacttt ttggaacctt gcagcaagta agtgcgcaaa
     2101 aactaggcgt tagtgaagct ttattcttag cagcaaactc tgtaggtgga gtagtaggaa
     2161 aaatgatcag ccctcaaagt atagctattg cttgcgcagc cgttggactt gtgggaaaag
     2221 aatctgatct tttcaaattc acactcaaat attctatagc ttttatcatt ttaataggaa
     2281 tttggacttg cattatcgca ttctttttac aaggaatcat tccagaagta gtagccaaat
     2341 aaaaacaaac ttgcaagatt tattcttgca agtttaagca agttttaaaa gaaaaaattt
     2401 tgaaaatatt tttatcattg atttaatttt gattttattt ttctaaagtt agaataattg
     2461 tttatattaa atctcttaaa atgaaggaga agaaatgaaa aaggtgtatt tttacgccac
     2521 atgcttagga actgctgcca tgcaagaaag cgttcttaat ggtattaaac ttttacgccg
     2581 agaaggagtg gaagttattt ttaaaaaaaa ccaaacctgt tgtgctcaac cctcttttaa
     2641 ttcaggatat tttaatgaaa gtcgcgaaat agccttatac aatgtagatt tatttgacaa
     2701 agattatcct atcgttgtac ctagtggatc ttgtgcgggt atgatgagtc atgattataa
     2761 agagcttttt aaggatagac ctgaattttc tagagtaaaa gattttagct cgcgtgttat
     2821 agaactttca caatatcttg atgaagtttt aaatgtaaat tatgaagata aaggagaacc
     2881 tattaaagtg acttggcatt ctaattgcca tgctttaaga gttcaaaaaa gtatacaagc
     2941 aagtaaaaat ctcattagaa aacttaaaaa tgttgaactt gtagaattac aatatgaaga
     3001 agaatgttgc ggttttgggg gaactttttc tgtaaaagaa cctgaaattt caaatgctat
     3061 ggtaagaaat aagattaaag atatacaaaa taccggagta aaatacctca tcagtggaga
     3121 tggtggctgt cttttaaata tagatggcac aatgaaaaga atgggtttag atgttaaagg
     3181 catacacttg tatgaatttt tatttaagcg tttggaagga gagagattat gagtcaaaaa
     3241 attccacacg aagaaattgt tcatattaaa ttaaacgaca ttcaaatgcg tgaaaatttg
     3301 atgactgcta tgcatacttt gcaaaaaaat agacttgggg tcattgatgc aagatttagg
     3361 gattggcaag gattaagagc caaagcaaaa caagctaaaa acaatgcctt aatgagccta
     3421 aaagataggc ttttagaatt tgaaaaaaac gctacaaaaa atggcataca agtgcattgg
     3481 gcaagtagcg ataaggatgc ttgtgaaata gtctatgaaa tcatgcgtga aaaaaatatc
     3541 accaagcttt taaaaggcaa gtcaatggcg agtgaggaga taggattaaa tcattattta
     3601 gaaaaaaaag gtttaaaagc catagaaacc gatcttggag agcttatttt acaactcaat
     3661 gaagaaccgc ctttgcatat agttgtccct gctattcata gaaatcgcca cgaaataggt
     3721 caaattttta aagataaact tggtgcaaaa ttagaaaatg acgaacctga aagcttaaat
     3781 gccatagcaa gagatcattt aagaaaagac tttgaaggct taaaattagg acttagtggt
     3841 gtaaattttg ccatgtcaag agagggggct ttttggctta tagaaaatga gggaaatggt
     3901 agaatgtgta ccacagcacc cgatattcac atcgcacttt gtggtgtaga aaaagttatg
     3961 gaaagctttg aagatgcagc aactatggtt tctttactta ctccttcagc cacaggacaa
     4021 tttataccta cttataacaa cattatcaca ggcccacgaa aaaatgggga tttagatggc
     4081 ccaaaagaag tgcatgtgat tttatttgat cacaatagaa ccaaaatgct agctcataaa
     4141 gattattatg aggctttgcg ttgtattcga tgtggggctt gtatgaattt ttgccctgtt
     4201 tatgatcaaa tcggcggaca cgcataccaa accacctatc caggacctat tggtgaagta
     4261 atcagtccaa atatttttgg tatagatcac acaggtgata ttttaaattt ctgttcgctt
     4321 tgtggacgct gttcagaagt ttgtccggtg caaattcctt tagctgatct gattagaaaa
     4381 ctaagatgcg ataagatagg acaaggagaa aatccaccta tgggtgcaaa aaatatccat
     4441 cataatgcaa tggaagcctt tgcatttaag caattcaaaa aagcagcaac aaaaggtgaa
     4501 agatggcgtt ttgcactttc aaaagcgcat tattttaatt ggtttgtgca aaacttatca
     4561 ggagctttac cagtgattaa aaaatggtat gcttttaaag aattacctca aatcaaaaaa
     4621 gatctatata aagaaattca ggctatagaa ggagtaattt atgagtaaaa ccaatgaaat
     4681 ttctaacaaa agcaaagaaa aaattttatc aacactcaat gaagcttatg aagcaaaaga
     4741 ttttacttat caagccagta tagatcctgt agagcatatt caaacaaaag aagatgcctt
     4801 agctgaaatg aagcaaaaaa tgagtgataa taaatacatt gttgaaaacg ctactaaaga
     4861 aactttggaa gaaaaaatca atgaaattat cacaaaatat aattacaaaa aaatgatata
     4921 tggcactgat ttaggcttag atttaaacaa aattcaagcc gaagaaaaaa tttgctttga
     4981 taaggaaatt gaaaatttac gatatgaagt ttttcatagc gatttttcta tagttcatgc
     5041 aagagctgga gtaagctctc atggcgttgc tttgatacct tcaagcaagg gacaacctag
     5101 aatgctaagt cttgcaccta agctttgtat agtgttatta aaaaaagaag acatagtaaa
     5161 aagccttagc gaagctttaa atttggtaaa aaaagaaaat gaaattttac ctacaaatat
     5221 tttatttatc gcaggtcctt caagaacagc agatatagaa ttaatcactg tttttggcgt
     5281 tcatgggcct caaattgctc atattgttat ttattaaaaa gttttagctc tagtgttatt
     5341 tactagagct aaaaccagct taagttaaat aaatattata cgagatatat taaaaatttc
     5401 atattttaaa tatagttaaa tgggaatatt tatatcctat ttaactatat atcattttta
     5461 atattgattt aatataaaat acgataacat acctcaatat caaaacatac aaataattga
     5521 gatttatttg gagaaaactt tggataaatt aattcctgct tgggatgaaa aatacagcat
     5581 aaatgatgag aaaatagacg cgcaacacca aaaacttttt gaattagctg ctaaaattga
     5641 aaatgctgtt tataaattcg ttcaacgcga tgagcttaaa gaaattctta ccgaactctt
     5701 taattatatg aaagatcact tcagtaatga agaggattat atgcaagaga tttcttatcc
     5761 ttatttaaat gaacataaaa taatgcacaa aaacattatc cacgatatgt cgcatcttat
     5821 ccaaaatata aagactacca atgatttaaa agaaaaactt tatactataa tgtcagattg
     5881 gctattagaa catattttac atcatgatgt tatgatagga aattggcttt cagagcaatt
     5941 attagccaaa caagaagaag agctagaaaa acttcaacaa gaggatcttc aacaagaaaa
     6001 acaatatgaa aacaatccaa atccaagccc tcctcaaatc aaaaaagaat acgattttat
     6061 ctattcttgc ccttgtagaa caaatcactt tctttcctat atagagcatc ttgatattat
     6121 ttgtcataaa aaacaactaa gatgtaaaaa atgtcaaaaa aatctatttt atgtaagaag
     6181 tgaaatcaaa actgaaaaaa ggaataatga tgtttccaaa gtgggatgat aattatagcg
     6241 ttcataatgc caagattgat gagcaacaca aaaaactttt tgaattagca ggtaaggttg
     6301 aatttatgtt tgatcgaccc gtatataaag atgatatcaa agctctattg gctgattttt
     6361 ttaactatat gaaagatcat tttaatgatg aagaaaaata tatgaagctt ataggatatc
     6421 ctggcttaga agagcataaa aagatacata aagaaatcat ccaatccatg atagacctca
     6481 ttaaaaacat aaaatcaacc aatgatttaa aagaaaaact ttacacggtt tctaaaaaat
     6541 ggctcttaga acatatactt tatgaagata tgaaagtaga acaatacaga cgctcttctt
     6601 tatcctctga agatgatagt gaagtaagtt ttgaagaagt aaaagaagaa aaagatgatg
     6661 aaacagcttt atatttttat acttgcgagt gtgttggaca aattcacgat gtgccttttg
     6721 gaattcatca aaaaatacaa ttaaaaggtg ctaaatttaa gtgtaaaaaa tgcaagatgg
     6781 ccatacaatt ttataaaaaa cattccgaat cttttgaata ataactattc tatagtagaa
     6841 tgaaataaaa aataattgat tctactatgg acaaaaaaat aaaatattat atctcaaata
     6901 aaacaaagta ttcttatcct attttaacca aggatattca atgctctaat tgcaaaaatt
     6961 tttactcgat agaatttgct tcaaatttga aaaaaataga aaaagaatgc ccatcttgca
     7021 aaacaaaaat ggacattaag cttaaagatt agttttttgc cttgcttaca atattgatga
     7081 tattttgagc aacttcatca gcaagttcta agtgcgaagt aaagcctacg caagagcaat
     7141 ttatctcacc taaaacatat ttatcgttgc ctttttcatc attatctaaa ataaaatcag
     7201 ctgtccaaat aagcggtaaa tcataattac ccaattttgc acgcacctta ggaagttctc
     7261 ctaaaaacat atctaccaaa ttttgccaat cctcgggttt atcatagcgg tattgcgccc
     7321 cactaaaaag cgtagcagaa aaagcatcgg catcttcagc tggtttttta tgcactacat
     7381 ttacaggagt gttataaagc attaaaagtc ttatctctcc ttctttaatg cgtggtaaaa
     7441 aagtcatatc tacaagcata ccattatcac ctatgatata ttgctcacaa aaatccataa
     7501 attcacccag ttctctatgc tctacatgat tgtcttttgc ttcggtacat ttgattttag
     7561 tatctaaagg caaaatatct ccttttactt cgccctctac actcacacgc caaattccct
     7621 cacctgtaga accgcgattt tgctttaaaa ccctttctcc cttagctaaa ctttttggaa
     7681 aattttcttt aaaagtcttg atatcatagt atgcataagt atcacttggc acaagatctg
     7741 tatctgcaag ttttgttaaa gcgtctttgg ctccataacc tatcatcgca tcaggatgag
     7801 gcatacccac aagaccttct tggcaaagtt ttcttagcat atcaaaatac tcattttctt
     7861 ctttaagatt gccaggatta atacgcgaaa cataaccatc aaaattttct tttacatagt
     7921 tataaatttc attctttttg cctacttcaa aaaaaatcac ctcggcattc caacccttag
     7981 cttttaaagc atttaccata ggcatagtat cttttctata gccatcttca cccttatcgc
     8041 taccgcctct aacctcaaaa aagactatat tttttttcat tgcactgctc cttttaagtt
     8101 aaaatataaa caattatttc ataaaaatgt tataaaagtt aaacgaataa gaggcttttt
     8161 ctcctataag atataaaaaa tttagaatta ttttaattct aaaaaattcg cattcaatct
     8221 aagcacggta tcacttatca ctttacctaa aaaattggaa ctttgactct ctaaacgatt
     8281 taaaaatcta tcgattctac cctcttcttt ccaaacagga tttaaaactt tagcaagttc
     8341 ttgaagttct ttttttgcat tttcataatt gcttaattca tcaataagtc ctaaatcttt
     8401 tgcattttgt gctaaaaaca cccttgcatt tgcccaatct tttcttttat ctaattccaa
     8461 atcgcgttct ttggctacaa attctgaaaa aagatcataa ctttcatcaa tcaaattttg
     8521 caaaaattct ctctcttctt cactccaagc ccttgtaaaa gttcctgcac tcttaaattc
     8581 ccctgcttgt atggtttgtt ctttaatccc tattttctta gccaactcac tcaaatcagc
     8641 accctgcata atcacaccta tagatcctat aaaactagca ggatttgcca aaattttatt
     8701 tgctcctact ccagccaagt aactcccact cgccatagtc ccacttgcat aagctataac
     8761 aggtttttta gtctttaaat ccttaatagc caaagctagc tccatacttg gagcaaaagc
     8821 acccccagga gaatctatca caaaaagcac gcctttaata ttatcattat ttttagcact
     8881 gataattttt tccaaaagtt ctgagctatc taatatctcg ccttttaagt caatgcgttc
     8941 taaatttgca tatgatgagc ttgaatttga gcttggtacc aaaagccaaa tcacgatcaa
     9001 caataaaaca aaagttttaa aataagtatt gataaatttt atcacgctac ccaaaccctt
     9061 aaaaaatgat tttaaaattt gcattctttt ccttttataa ataatttttg cacttcttta
     9121 gcatttaaaa taaattgcaa tggcgcttgc tccttgttgc attctcctaa ttcaaataca
     9181 ctaaaatcag ccatttttcc ttgcttgatt tcacctaaat ttaaatttaa agctttagct
     9241 ggataaagcg ttgccatttg taaaagctta ggagctaatt ttaacaaatc aaaatctgta
     9301 tgcacaagca aactagcacg catttcatct aaaatcgata aagaaatatt agaacttaaa
     9361 ccatctgtac ccaaatggat atttaagccg ctttttaaag ccttttttaa atcaaatgtt
     9421 ttttgactta aaagacgatt tgaaaaagca caatgggtaa tagaatgtaa atttttatca
     9481 agcaaatcca tttcttttaa atacacacaa tgggtaaaaa gcgtcctaac acctttaaat
     9541 aattgaataa attcactagc tttataaaga ggcttaggat ctggcgtaaa gtttttaaac
     9601 cattctttaa accctccttt tgcctcttta agccaagcat tttcagcctt actttctaaa
     9661 aaatgcgtac tgattaataa cttttgcttt ttagcaagat tgattgcaaa ttttgcaagc
     9721 tctggatgag ttgaataagc agaatgcaca gaaatagcag gtataaaaaa ctcatcttta
     9781 aattttaaag atttttcaaa tcttgttaaa aactcttgtt ttttatcttg aatttgggct
     9841 tcatttatgc ctaaaatttc attaaaaaat acaacacgca ttccattttg acttgctcta
     9901 acacaaggat ttaaatcgct gccaaagctt gaaatttcac ctatagtacc tataccgctt
     9961 ttttgcattt tttgaatgtt ttttaatata agctcttctt tagcttgctc atttaacata
    10021 gaacgagagt taatcacgct tttaagccaa attaaaaatt ctccaaaatg caaagtggtc
    10081 gaatttgcgc taaattctaa atgggtgtgc ggattgataa aagcaggcaa aatgacgcaa
    10141 ttagggcttg tttttataag cttagcccct gggtatcgtt tttttaattc ttctaattcg
    10201 cctaattcta aaatttcatt ctcaaaaaca aaggctttgt tttctaaaat actaaattgc
    10261 tcgtcacata aaaagatata ttttgcacta attatataca ttcttttttt ccttgaataa
    10321 aatcacattg tagcgaaaat ttattttaaa atgttataat aaaaggttaa aaataaaaat
    10381 tttaaggcaa aattatgaaa gtaatggtca tccaaggccc aaatatcaat atgctaggcg
    10441 taagggaagt tagaatttat ggtgcaatga aaatggaaga cattcatact caaatgaaga
    10501 tggcagcttc tcaaaacaat gttgaattag atttttttca aagcaatttt gaaggcgaaa
    10561 ttgtagataa aattcaagaa tgtcttggta cagtagatgg tataatcatc aatgctgcag
    10621 gctatactca tacttcagta gccattcgtg atgcgatttc tgcagtggct ttacctacga
    10681 tagaagtaca catcagtaat gtttatcgca gagaagaatt tcgtcaaaaa agccttatag
    10741 ctcctgtatg ttctggatct atagtaggat ttggtccttt tggttatcat ttagctttaa
    10801 tgggcattat tcaaatttgc gagcaagtaa aaaatttgca tgctgcg
//
LOCUS       DARAII010000053        10789 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.053, whole genome shotgun sequence.
ACCESSION   DARAII010000053 DARAII010000000
VERSION     DARAII010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10789
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.053"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            43..3795
                     /locus_tag="SB143_001116"
     CDS             43..3795
                     /locus_tag="SB143_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEF9749658.1"
                     /translation="MQTKTVGIVIPIYNVEKYLKECLDSVINQSYTNLEIILVNDGST
                     DENSLSIAKEYTLKDKRITLFDKKNGGQSSARNVGIEYFSGEYKLKNKTQTIKENSLI
                     EFNLEDNNPYEIYTVYKSYKAFNNEKDLTKFTYPNIDYIIFLDPDDYWRLDAVEQCVI
                     RCQDVDLIWFDYKMFYDNIDKNHYENVENLTKTQMQIYEYFAPEIINVQQWLERMIKI
                     QSTLPFWCVCAACYSFSYLKRIQLKFLDGFIHEDVHFGILSFIQAENIYIFPSQLYYY
                     RIRSSSTAAYDKKITKDNITPYIENLCYDFNGDIKKAKHYHAKSSNFFNAFYIREFIK
                     NKLDDKKGQMLEEAIFMYLYFWHFDLRDFEKDPRDTLKFLSNHKPLYQENQDRYPEYD
                     FICKYGFARDRIQKQLTYRLGKLVLEKSQNFFGLIFLPYFIFKLILKFKNEKKEYQKL
                     IKKNPELSLPKLESYPDFDDIWKVREHLSFKIGHLILKANKNWHKGSYIYLPYYIYKC
                     YKQHQNSKKNISTSIHSQGILLKRQFIWKDENLVNIALNKRVFQSSIDELDYRHNPNM
                     IVSQDYSGVKSYKTCFTNWPWFVVDLCKVCVLEKIRIINVKNHFKRKYLRGMDISFSI
                     DGIHWTAISREKFYWKYNDYYCELVLSECLSARYVKISIERGALELSKIEIFSRNKNG
                     YIISSKPDGLGMRLASILVGMYLAKKCNFNFGFTWSNSIDLAFMGITDSQNTKEINYL
                     GNAMDEVDAVFNLDFIKEYLIDSACVNENHGMEIRKKNSTFEQIQNKTNFETEWGWYS
                     TDILPSNWLNECVEKECLKEISRIYSTIGFSDGFEKIIQDSRVVKINKFVALHIRGGD
                     IIFSKIRKAPGWNVVQERYFPYEIALDIVTKELASGYSIIVFGQDLNANKALVEYFQK
                     TAFEKIFLVDEFIDKTYNEMERSFFEINLMSRAEKIYSAKESVFSKVAMMIAGKNNLI
                     SYHDIYTQVEQADIIQANLSKITLHNFQDARAYFRLFELFRDRDIEKSMSFLNKALEL
                     DYDNDAYRIYILDCLFRLKDYHTVNMMLEKIITERCEEFFTTLLQYSMGSFTLEYEYY
                     RNFEQKEYPNILYVAFRIFMFFGDIKKADYVRFHLLEDKLSIFKKKSRSNEKNIGAVA
                     RVKCHLSYSLGVEFIRNKNKIYKIPICIYKVIGKYRKERMVWKNYNYPSLETYSDYQD
                     ALRIKNQLSYKIGDLLIQSYKKWYKGAFLILPWEFYLLVKKYKKGK"
     gene            3795..4337
                     /locus_tag="SB143_001117"
     CDS             3795..4337
                     /locus_tag="SB143_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEF9749659.1"
                     /translation="MAIEFDVQESKILRGVHIITPNKFKDLRGEIWTAFTSETIDKLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEVHQVVVDCRKDSPTYLKHEK
                     FIINQDNQQIILVPAGFGNAHYVSSESAVYYYKCAYLGEYVDADDQFTYAWNDERIGI
                     NWPTNSPILSDRDVLAVNKG"
     gene            4341..5396
                     /locus_tag="SB143_001118"
     CDS             4341..5396
                     /locus_tag="SB143_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HEF9749660.1"
                     /translation="MEKNSRIYIAGHRGSAGSAIMEKLQNLGFDNLIYATREELDLLD
                     FDAVKNFFDDNQPEYVFFAAAKMSALGVRAPADILYENLTIQNNIFHNSYLSNVKKLI
                     FFGSSWMYPQYTQNPIKEDSLLTSELEYNAEPYALAKIAGVRMCEFYNLQYNTNFISV
                     ALTNLYGKTADFNLKTARVLPAMLRKFHLAKLLNEKKYGDILLDLNLQDESKAISYLK
                     TNGIYEEYIELWGAGKTRREFIHSDDLVDACMYIMKHVNFSDLSKNNIKNTHINIGTG
                     SDLSIAELALLIKEITQYKGEIKFDISKPDSPMNRLLDCSKIHSLGWKHKIELEEGIK
                     MMYEDYLQNNKRGTGVK"
     gene            5393..6424
                     /locus_tag="SB143_001119"
     CDS             5393..6424
                     /locus_tag="SB143_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEF9749661.1"
                     /translation="MKKTTLITGFTGQVGSQMADFLLENTNYDVIGMMRWQESMDNIY
                     HLSDRINKKDRISIFYADLNDYSSIQKLFESKRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRLLKAKDGYDPVVHICSSSEVYGRAKVGIKLNEDTTFHGASPYSI
                     SKIGTDYLGRFYGEAYGIKTYVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVV
                     KVGNLSSVRTFQDCRDAIRAYYLLSLESEKGNVPCGEAFNIAGEEAFKLPEVIDILLG
                     FSTRKDIKVEEDEERLRPIDADYQMFDNTKIKSYINWKPEIPARKMFEDLLNHWRKEI
                     SMGRIPLNR"
     gene            6428..7447
                     /locus_tag="SB143_001120"
     CDS             6428..7447
                     /locus_tag="SB143_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase"
                     /protein_id="HEF9749662.1"
                     /translation="MMIIRSQTPLRLGLAGGGTDINLYCDQYTGYVLNATVSLYVHCT
                     LTERNDQKIIFDSSDTGIKVQYQSKEFLENDGKLDLYKAIYNRLIKDYIKRPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGIIKAFAEWLNLPLGEYEIARLAYEIEREDMGIVGGAQD
                     QYAATFGGFNFMEFYDQKRVIVNPLRIKNWIASELEARVLLYFTNITREAKDIEEHKK
                     GKLGDENSLNAMHAIKQDALDMKEALFRADFEKIAQILGKSWQSKKIISEIISNDELE
                     RIYHLAMENGAYSGKTSGAGAGGFMFFMVDPIKKYKLKKILNEQQGYVQEFYFTKEGA
                     KSWKI"
     gene            7435..8040
                     /locus_tag="SB143_001121"
     CDS             7435..8040
                     /locus_tag="SB143_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEF9749663.1"
                     /translation="MENLNLYIKSHFSDSMDVKNKILNNDDMIDLIKEVSLKIISAYK
                     NGHKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVSGDVFIGISTSGNSKNILKALEVCKKKGILSIGLTGASGGAMNEFCD
                     YCIKVPSSCTPRIQEAHILIGHIICAIVEEEIFGKGFDCKL"
     gene            8028..8711
                     /locus_tag="SB143_001122"
     CDS             8028..8711
                     /locus_tag="SB143_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEF9749664.1"
                     /translation="MQAIVLAGGLGTRLRSVVQDLPKPMAPINGKPFLAFVLEYLKKQ
                     GITEIILSVSYKYELIQEYFKDEFHGMKIHYNIEKELLGTGGAIKDALKFVKNEVYVL
                     NGDTFFDIDLKKPVLNSSKICIALKQMQNFDRYGTVNVDEQGIVTSFEEKVFKKQGLI
                     NGGVYLLKKDIFNNFSLERKFSFEEFLQENYKTLKIQTQIFDDYFIDIGVPKDYKEFI
                     NDKGRKIII"
     gene            8683..>10789
                     /locus_tag="SB143_001123"
     CDS             8683..>10789
                     /locus_tag="SB143_001123"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749665.1"
                     /translation="MTKVEKLLSSLKNFEFYLNNKTIYDYKTYKGEIADIREAYINNN
                     IQYFVNFWNLKNQEKYFELKHPILNYITTRAIFSIQLNSANFIFMIDKENKYPWIIGQ
                     CQSLVDSIIVENKLYIISSVMQTDLLNQIDKLSQISPSVFSFKDIEFGYILSQNRPFH
                     HFYDQLRYFYSIDKPKKIFNNSSFFIPNHAEKTSEDLVYVFPTGICVNQIGSRSAYAK
                     ISSTIADILDDYLEKQMLKNSLDSKSYINNKKYELNLWFSICSEKRVWLQQTSGYVNI
                     IKELLKYYSNIRVFFDGITAKEGEVIDYKQDYRIYDKIKISLKDVSKNKYEFVPLIGV
                     DYKTKIYYANEIDFFIASGGTAPIVPSRICRKPGIIIGNSNTYNLGMKNENTIVIELD
                     RIQDVVAMRYSAFQNFHISWEYIFSLMCQYFKLEFNDSIPNNNEVVLQWIFDSIKDLS
                     KYKQSWQSFLLELIEIFEQANLIDIADILLEKVVVFLDENTKIKYINKKKIYQEYCSK
                     KQFESTIAELKSLLSQKELQLQNKTNELKNLQEDIIHKKQLLEVQNLEQDLILKSLQT
                     KEIQENINLKTLEKTKIQKELDQYNNVVYIERYHQSAKQRIYNHLSYKLGFCAIKKSK
                     TLWGWISMPIILLSIFISHKQEQKIYQEKIKKDPSLKLPSLELYTDYQEARKEENSFT
                     YKLGQAIMNANKTWYKGGYV"
BASE COUNT         4067 a         1207 c         1916 g         3599 t
ORIGIN      
        1 gttgaaggaa aaagaaaata tattttaagc aaaggtctag caatgcaaac taaaaccgta
       61 ggtatagtaa ttcctattta taatgtagaa aaatacttaa aagaatgttt agacagtgtt
      121 atcaatcaaa gctatacaaa cttagaaatt atacttgtaa atgatggtag tacggatgaa
      181 aattcactga gtattgctaa agaatatact ttaaaagata aaagaattac tctttttgat
      241 aagaaaaatg gtggacaaag tagtgctaga aatgtaggta tagaatactt tagcggagaa
      301 tacaaactta aaaacaaaac ccaaaccatc aaagaaaatt ctttaataga atttaaccta
      361 gaagataata atccttacga aatatatact gtatataaaa gttataaagc ttttaacaac
      421 gaaaaagatc taacaaaatt tacttatcct aatatagatt atattatctt tttagatccc
      481 gatgattatt ggcgtttgga tgcggtagag cagtgtgtga ttagatgcca agatgtcgat
      541 ttgatttggt ttgattataa gatgttttac gataatattg ataaaaatca ttatgaaaat
      601 gttgaaaatt taacaaaaac acaaatgcaa atttatgaat attttgctcc tgaaattata
      661 aatgttcagc agtggctaga aagaatgatt aaaattcagt ctactttgcc attttggtgt
      721 gtgtgtgctg cttgttattc tttttcttat ttaaaaagaa ttcagcttaa atttttagat
      781 ggttttatcc atgaagatgt tcattttggc attctatctt ttatacaagc tgaaaacatt
      841 tacatatttc catcacaatt atattattat agaattcgtt catcttcaac tgctgcttac
      901 gataagaaaa taaccaaaga caatattact ccttatattg aaaatttgtg ctatgatttc
      961 aatggtgata ttaaaaaagc taagcattat catgcaaaaa gtagtaattt ttttaatgca
     1021 ttttatattc gagaatttat caaaaataag ctagatgata aaaagggaca aatgcttgaa
     1081 gaggcaattt ttatgtatct atatttttgg cattttgatt tgagagattt tgaaaaagat
     1141 cctagggata ctttaaaatt tttatctaat cataaaccat tatatcaaga aaatcaagat
     1201 agatatccag aatatgattt tatatgcaaa tatggttttg ctagagatag aattcaaaaa
     1261 caacttactt acagattagg gaaattagtt ttggaaaaat cccagaattt ttttggtcta
     1321 atatttttac cttattttat ttttaaatta attttgaaat ttaaaaatga aaaaaaagaa
     1381 tatcaaaaat taatcaaaaa aaacccagaa ttatctttgc caaaattaga atcatatcct
     1441 gattttgatg atatttggaa agttagagag cacttgtcat ttaaaatagg acatttgatt
     1501 ctgaaagcaa ataaaaattg gcataaggga tcatatatat atttgcctta ttatatttat
     1561 aaatgctata aacagcatca aaatagcaaa aaaaatatat caacttctat ccatagtcaa
     1621 ggaattttat taaagagaca atttatatgg aaagatgaaa atctggtgaa tattgcttta
     1681 aataaacgag tatttcaaag tagtatcgac gaattagatt atagacataa tccgaatatg
     1741 atagtcagcc aggattattc tggagttaaa tcgtataaaa cttgttttac taattggcct
     1801 tggtttgttg ttgatttgtg taaagtttgt gtattggaaa aaataagaat tatcaatgtt
     1861 aaaaatcatt ttaagagaaa atacttaaga gggatggata tttctttttc gatagatggt
     1921 attcattgga ctgcaatatc gagggaaaaa ttttattgga aatataatga ttattattgt
     1981 gaattagttc tgtctgagtg cttgagcgca agatatgtta aaatttcaat agaaagaggt
     2041 gctttagaat tgtcaaagat tgaaattttt tcaaggaata aaaatggata tattatctct
     2101 tcaaaacccg atggtttagg tatgagatta gctagtattt tggttgggat gtatttggca
     2161 aaaaaatgta attttaattt tggatttaca tggtccaatt ctatagattt ggcctttatg
     2221 ggtataaccg attcgcaaaa tactaaagag attaattatc ttggtaatgc aatggatgag
     2281 gtagatgctg tttttaattt agattttatt aaagagtatt tgattgatag tgcttgtgtt
     2341 aatgaaaatc atggaatgga aattcgtaag aaaaattcta cctttgaaca gattcaaaat
     2401 aagactaatt ttgagacaga atggggttgg tattctaccg atattcttcc tagtaattgg
     2461 ttgaatgagt gtgttgaaaa agaatgtttg aaagaaattt ctagaattta tagcacgata
     2521 ggtttttcag atggatttga aaaaataatt caagattcta gagtagtaaa aattaataag
     2581 tttgttgcat tacatattag aggtggagat ataatttttt cgaagattag gaaagctcct
     2641 ggttggaatg tagtacaaga gagatatttt ccatatgaaa ttgctttgga tattgtaacc
     2701 aaagaattgg caagtggcta cagcattatt gtttttggac aggatttgaa tgctaataag
     2761 gccctcgtgg agtattttca aaaaactgct tttgagaaga tatttcttgt agatgaattt
     2821 atagataaga cttataatga aatggaaaga agtttctttg aaattaattt aatgtctcga
     2881 gctgaaaaaa tttactctgc aaaggaatct gtattttcca aagttgctat gatgatagca
     2941 ggaaaaaata atttaatttc ctatcatgat atttatactc aggtggaaca agcagatatt
     3001 atacaagcaa atttatcaaa aatcacattg cataatttcc aagatgctag ggcttatttt
     3061 agactttttg aattatttag agatagagat attgaaaaat caatgtcatt tttaaataaa
     3121 gccttagagt tggactatga caatgatgct tatcgcatct atatattaga ttgtctattt
     3181 agactcaaag attatcacac tgtgaatatg atgttggaaa aaattattac tgagcgttgc
     3241 gaagaatttt ttacaacatt attgcagtat tctatgggaa gttttacatt agagtatgaa
     3301 tattatagaa attttgaaca aaaagaatat ccaaatattt tatatgtcgc atttagaatt
     3361 tttatgtttt ttggagatat taaaaaagcc gattatgttc gttttcattt attggaggat
     3421 aaattatcta tttttaaaaa aaaaagtcgc tcaaatgaaa aaaatatagg agctgtagct
     3481 agggtaaagt gtcatttaag ttattcttta ggggttgagt ttatacgcaa taagaataaa
     3541 atttataaaa ttcctatttg catatataag gtaattggta aatatcgaaa agagagaatg
     3601 gtttggaaaa attataatta tcctagtctt gagacttaca gtgattatca agatgcttta
     3661 aggattaaaa accaactttc gtataagata ggagatcttt tgattcaaag ttataaaaaa
     3721 tggtacaaag gtgctttttt aatattgcct tgggaattct atcttttggt aaaaaaatac
     3781 aaaaaaggaa aataatggct atagaatttg atgtacaaga atcaaaaatt ttaagaggag
     3841 tgcatattat aactccaaat aaatttaaag atttaagagg tgagatttgg acggctttta
     3901 caagtgagac tatagataag cttttgccaa atgggttaaa atttatacat gataaattta
     3961 tacactctaa acacaatgtt attcgtggta ttcatggtga tgtaaaaact tacaaattgg
     4021 ctacttgtgt ttatggagaa gtgcatcagg tggttgttga ttgtagaaaa gattcaccta
     4081 cttatttaaa acatgaaaaa tttattataa atcaagacaa ccagcaaatt atcctagtgc
     4141 cagcaggttt tggaaatgct cattatgtaa gtagtgaaag tgctgtatat tattacaaat
     4201 gtgcttattt aggagagtat gtggatgctg atgatcaatt tacttatgct tggaatgatg
     4261 agagaattgg tataaattgg ccaacaaatt cgcctattct ttcagatcga gatgttttgg
     4321 cagtaaataa gggttaaaat atggaaaaaa attctagaat ttatatagca ggtcataggg
     4381 gttcggcagg aagtgccata atggaaaaat tacaaaattt aggttttgat aatttaattt
     4441 atgcgactcg agaagagttg gatttacttg attttgatgc tgttaaaaat tttttcgatg
     4501 ataatcagcc agaatatgtt ttttttgcgg cagctaaaat gagtgcttta ggagttaggg
     4561 ctccagctga tattttatat gaaaatttaa caatacagaa taatattttt cataactcat
     4621 atctttcaaa tgttaaaaaa ttaatttttt ttggtagttc ttggatgtat ccacaatata
     4681 cccaaaatcc cataaaagaa gatagtttgc ttactagcga attagaatat aatgctgagc
     4741 catatgcttt ggcaaaaatt gctggagtta gaatgtgtga attttataat ttgcaatata
     4801 atactaattt tatttcggtt gctttaacta atttgtatgg aaaaacagct gattttaatt
     4861 taaagacagc tagagtgcta ccagcaatgc ttagaaaatt tcatttggca aaactactta
     4921 atgaaaagaa atacggcgat attttattgg atctcaactt acaagatgaa agcaaagcga
     4981 taagctatct taagacaaac ggaatttatg aggaatatat agaactttgg ggggccggca
     5041 aaactagaag agagtttata cattcagatg atttagtgga tgcttgtatg tatataatga
     5101 aacatgttaa tttcagtgat ttgtctaaaa ataatataaa aaatacacat attaatatag
     5161 gcactggaag cgatttgtct attgcagagc tagctctttt gataaaagaa attacgcaat
     5221 ataaaggtga aataaaattt gatataagca agccagatag tcctatgaat agattgcttg
     5281 attgctctaa aattcattct ttaggatgga aacataaaat agaacttgag gaaggtatta
     5341 aaatgatgta tgaagattat cttcaaaaca ataaaagagg tacgggagta aaatgaaaaa
     5401 aacaacatta attactggtt ttacgggcca agttggctcg caaatggcag actttttact
     5461 agaaaataca aactatgatg ttataggtat gatgcgttgg caagagagca tggataatat
     5521 ctatcattta agcgatagaa taaacaaaaa agatagaatc agcatttttt atgcagatct
     5581 gaatgattac tcaagtattc aaaagctttt tgaaagtaaa agacccgatg tgatctttca
     5641 tctagccgca cagtcttacc caaaaacttc ttttgatata cctatagaaa ctctacagac
     5701 aaacatcata ggcacagcaa atattttaga aaatattaga ttattaaaag ctaaagatgg
     5761 ctatgatcct gtggtacata tttgctcttc tagcgaagtt tacggtagag caaaagtggg
     5821 tatcaagctg aatgaagata cgacttttca tggtgcaagt ccttatagta taagcaaaat
     5881 tggtacggat tatctaggaa gattttatgg tgaagcttat ggtataaaaa catatgttac
     5941 cagaatggga actcatagtg gtccaagacg ctccgatgta ttttttgaaa gcacagttgc
     6001 aaagcagatt gccttgatcg aagcagggta tcaagagcct gttgtaaaag taggaaattt
     6061 atctagcgta agaacttttc aagattgtcg tgatgctata agagcttatt atctactttc
     6121 attagaaagt gaaaaaggca atgttccttg tggagaagct tttaacatag ctggcgaaga
     6181 agcctttaag cttcctgaag ttattgatat acttttaggt ttttctacaa gaaaagatat
     6241 caaagtggaa gaagatgaag aaagattacg acctattgat gcagactatc aaatgtttga
     6301 taataccaaa atcaaaagtt atatcaattg gaagccagaa attccagcca gaaaaatgtt
     6361 tgaagatttg ctaaatcatt ggagaaaaga aatttccatg ggcagaatcc cgcttaatag
     6421 gtagtaaatt atgataatcc gttctcaaac tccgttacgc ctaggattag ctggtggggg
     6481 tactgatata aatttatatt gtgatcaata tacaggttat gttttaaatg cgacagtatc
     6541 tctttatgtg cattgtactt tgacagaaag aaatgatcaa aaaatcattt ttgactcttc
     6601 tgatactggc ataaaagtac agtatcaaag taaagagttt ttagaaaatg atggtaaatt
     6661 agatctttac aaagcgattt ataatcgctt gataaaagac tatattaaaa gacctttaag
     6721 tttttctttg catacttatt cagatgtacc aagtggtagc gggctagggg gtagttctac
     6781 tttggtagta ggtatcatca aagcatttgc agaatggctc aatcttcctt taggtgagta
     6841 tgaaatcgct cgtttggctt atgagataga aagagaagat atgggtatag taggaggtgc
     6901 acaagatcaa tacgctgcga cttttggtgg atttaatttt atggaatttt atgatcaaaa
     6961 aagagttata gtcaatcctt tacgcattaa aaactggata gcaagtgagc ttgaagctag
     7021 agttttactt tattttacga atatcactag agaagcaaaa gatatagaag agcataaaaa
     7081 aggaaaacta ggagatgaaa attcgcttaa tgctatgcat gcgataaaac aagatgcatt
     7141 agacatgaaa gaggcgctat ttagagctga ttttgaaaaa atagcacaaa ttttaggtaa
     7201 atcttggcaa tcaaaaaaga ttatttctga aatcattagc aatgatgagc ttgaaaggat
     7261 ttatcattta gctatggaaa atggtgctta tagtggcaag acaagtggag caggcgctgg
     7321 aggatttatg ttttttatgg tagatcctat taaaaaatat aaacttaaaa aaatattaaa
     7381 tgaacagcaa ggctatgtac aggaatttta ttttacaaaa gagggggcaa aatcatggaa
     7441 aatttaaacc tatatataaa atctcatttt agcgattcga tggatgttaa aaataaaata
     7501 ttaaataatg atgatatgat tgatttgatc aaggaagtgt ctttaaaaat tatcagtgct
     7561 tataaaaatg gccataaaac cttgctagca ggtaatggag gaagtgcagc tgatgcacag
     7621 cacatagcag gggagtttgt aagtagattt tattttgata gaccaggcat cgcaagtata
     7681 gctttaacaa cggatacgag catattgaca gctattggta atgactatgg ctatgaaaat
     7741 ttatttgcta gacaagtgca agctcaaggt gtgagcgggg atgtttttat tggaatttct
     7801 acaagtggaa atagtaaaaa catcttaaaa gctttagagg tttgcaagaa aaaagggatt
     7861 ttaagcatag gtttaactgg agctagtggg ggagccatga atgaattttg tgattattgc
     7921 atcaaagtgc catcatcttg cacaccaaga attcaagaag cacatatttt gataggacat
     7981 attatctgcg ctatagtaga agaagagatt tttggcaagg ggtttgattg caagctatag
     8041 ttttagccgg aggccttggt actaggctta gaagtgtagt gcaagatctt ccaaaaccta
     8101 tggcaccgat caatggaaaa ccctttttag cttttgtttt agagtatttg aaaaagcaag
     8161 gaattaccga gattattcta agtgtttcgt ataaatatga actgattcaa gagtatttca
     8221 aagatgaatt tcatggcatg aaaatacact ataacatcga aaaagagctt ttgggtacag
     8281 gtggagctat aaaagatgct ttaaaatttg taaaaaatga agtctatgtt ttaaatggag
     8341 atactttttt tgatattgat ctaaaaaagc ctgttttaaa cagtagtaaa atttgcatag
     8401 ctttaaaaca aatgcaaaat tttgatagat atggtacggt caatgttgat gagcaaggta
     8461 tcgtgacatc ttttgaagaa aaggtgttta aaaagcaagg tttaatcaat ggtggcgtat
     8521 acttgctaaa aaaagatatt tttaataatt ttagtttaga gaggaaattt tcttttgaag
     8581 aatttttgca agaaaattat aaaacattaa aaatacaaac tcaaattttt gatgattatt
     8641 ttatagatat tggagtaccg aaagattata aggaatttat aaatgacaaa ggtagaaaaa
     8701 ttattatcta gtttaaaaaa ttttgaattt tatttaaata ataaaacaat ttatgattat
     8761 aaaacataca aaggagaaat cgctgatatt agggaagctt atattaataa taatatccaa
     8821 tattttgtaa atttttggaa tttgaaaaat caagaaaaat attttgaatt gaaacatccc
     8881 attttgaatt atattacaac tagagctatt ttttctattc agttaaattc agctaatttt
     8941 atttttatga tcgataagga gaataaatat ccttggatta taggacagtg tcaaagttta
     9001 gttgatagta taatagttga gaataagcta tatataatat ctagtgtaat gcaaactgat
     9061 ttactaaatc aaatagataa attgtctcaa atttctccta gtgtattttc atttaaagat
     9121 atagaatttg gctatatact atctcaaaat agaccttttc atcattttta tgatcaattg
     9181 agatattttt atagcataga taaacctaaa aagattttca ataatagttc tttttttatt
     9241 ccaaatcatg cagagaaaac ttcagaagat ttagtgtatg tttttccaac aggaatttgt
     9301 gtaaatcaga ttggttctag atctgcttat gcaaaaataa gttcgactat agccgatatt
     9361 ttggatgatt acctagagaa gcagatgtta aaaaactctt tggatagtaa aagttatata
     9421 aataataaaa aatatgagtt aaatttatgg ttttcaatat gttctgaaaa aagagtttgg
     9481 cttcagcaaa caagtggtta tgttaatata ataaaagaac tattaaaata ttattctaat
     9541 attagagtct tttttgatgg tattactgca aaagaaggtg aagttattga ttataaacag
     9601 gattatcgaa tatatgataa aattaaaatt tctttgaaag atgtttcaaa aaataaatat
     9661 gagtttgtgc cattaatagg agttgattat aaaacaaaaa tttattatgc aaatgaaatt
     9721 gattttttta ttgcaagtgg agggactgct cctatagttc catctagaat atgtagaaag
     9781 ccaggtatta ttattggtaa ttcaaataca tataatttgg ggatgaagaa tgaaaatact
     9841 attgtcattg aattagatag aattcaagat gttgtcgcaa tgagatattc agcgtttcaa
     9901 aattttcata tatcttggga gtatattttt tctcttatgt gtcaatactt taaactcgaa
     9961 tttaatgata gtattcctaa caataatgag gtggtcttgc aatggatatt tgattctata
    10021 aaagatttga gtaaatacaa acagtcatgg cagtcatttt tattagaatt aattgagatt
    10081 tttgagcagg caaatttaat tgatatcgca gatattttat tagagaaagt tgttgtattt
    10141 ttagatgaaa ataccaaaat taaatatata aataagaaga aaatatatca agaatactgc
    10201 tcaaaaaaac agtttgaatc gactattgct gagttaaaat cattgctttc tcaaaaagaa
    10261 ctccaacttc aaaataaaac taatgaactt aaaaatttac aagaagatat tatccataaa
    10321 aagcaacttc tagaagttca aaatttagaa caagatttaa ttttaaaatc tctacaaact
    10381 aaagaaattc aagaaaatat taatttaaaa acattggaaa aaacaaaaat acaaaaagag
    10441 ctagatcagt ataataatgt agtttatatt gaaagatacc atcaaagtgc aaaacaaaga
    10501 atttataatc acttatcata taaactaggt ttttgtgcta taaaaaaatc taaaacttta
    10561 tggggatgga tcagtatgcc aataatactt ttaagtattt ttatatctca taagcaagaa
    10621 caaaaaattt atcaagagaa aataaaaaaa gatccatcct taaaacttcc atcgcttgaa
    10681 ttatatactg actaccaaga agcaaggaaa gaagaaaata gctttacata taaacttgga
    10741 caagccataa tgaatgctaa taaaacttgg tataagggtg ggtatgtta
//
LOCUS       DARAII010000054        10780 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.054, whole genome shotgun sequence.
ACCESSION   DARAII010000054 DARAII010000000
VERSION     DARAII010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10780)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10780)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10780
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.054"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            12..320
                     /locus_tag="SB143_001124"
     CDS             12..320
                     /locus_tag="SB143_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749666.1"
                     /translation="MKNIFQKILTLILISPMFLLSADGGNIASKLANSVNQQVTDVGS
                     SLSSIVNTIAIVMGVIWIVIMLLMAFFNMEGIKNHAKLLFGALVIIGVVYGLSAAGMN
                     "
     gene            320..562
                     /locus_tag="SB143_001125"
     CDS             320..562
                     /locus_tag="SB143_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749667.1"
                     /translation="MIETSCYRDLTRKTKIKGLTSTSWFALIILGFIAWFFLVLYSLI
                     VIAFLYCFFFILEFLDEDIYQIIFAKLSIPQNKYYA"
     gene            572..3040
                     /locus_tag="SB143_001126"
     CDS             572..3040
                     /locus_tag="SB143_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749668.1"
                     /translation="MGTSIFTYLKELKNKPKKENLGKKEKKNFKEYINKINRGTDNIL
                     MLAEPKIFTMAKENNIAFKLDENILVTKDGNLCVGMEIKGISYSGTSLEEELSYLQNR
                     VQFFGKISTDIEINLIIKKDKIELTKQVSQSKNIFANQIIEKWENHKDAFQITYFLLI
                     STIDKKISGALETFKNKATKEKEQSKEEKESFSIEAKKNIINETLNEAKRALSIFNPT
                     QITADDILNFYATYSNAQETKFKYTNELITDSYISSNVEFKKDYILFERNDGKQMFSR
                     FISIKAYETDIISSNITTKILRSSSDFIIFMNMQAYEKEKAIKKVKDTGAFAPQIIKD
                     ELNGLIEIIKADRENLMLVSFSVYILAENLEDLETKTNELKGILANQNLNIVRETINQ
                     KALYFSFFPSRANLNARKRTLKVSNLASIANFEKDVLGFAKNDWGEQPVTIFRHLSGT
                     PYLFNFHWTDQGDKPSGHTMIIGGTGAGKTTLAQFLMCNLYKYDIDIFSMDKLRGMYN
                     FATYTDGEYHDADFSDFKLNPFALPYTSENKSFLQNFIQKMANIEDNQYNAVNEISKT
                     IERLYNNKLEEDIFTLSDFIDSLQHEENDIKGRLRPFQGSIFDNKQDALSFSKQLSIL
                     NMDSILKNPTLASLTASYIFHRLKNSAKNSKKRGFFCFIDELKDFLMDENMRESILES
                     ILEVRKIGGVMCMGFQNLSFFDDIPKGASFLENIANYIIFPTTNAQTLDNMRNKLNLT
                     PTELKFLQEAGTNSRQVLLKMNLSNQSAILNVDLSRLGKHLRVFSSSSDNVMLMKELK
                     ELYPNDWRNMYLENQKPNLNQGVK"
     gene            3040..3168
                     /locus_tag="SB143_001127"
     CDS             3040..3168
                     /locus_tag="SB143_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein VirB7"
                     /protein_id="HEF9749669.1"
                     /translation="MKILKISILTITIIFFSACATTNKEIPKKSPCACNYDVIKIS"
     gene            3185..3862
                     /locus_tag="SB143_001128"
     CDS             3185..3862
                     /locus_tag="SB143_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence protein"
                     /protein_id="HEF9749670.1"
                     /translation="MAFIDDKKDPNFIFQLERNIKAYMLYIIIALTTIVVSLAIAIAF
                     LAPFKEVKPYLVFFSDGETNFVKVEQAGMDMRADENLLKSILAGYVKKRETINRVDDS
                     ERYEEIRLQSQKNVWQTFSNLVKAPNSIYTTQGVFRSIEIINVSIFNKNVATIDFIAK
                     ITNRDGSENHLKKYRATLFFDFIPMELTYNSVPKNPTGFIVKQYSITDIIDKDTFNTT
                     QQTQGAK"
     gene            3862..4926
                     /locus_tag="SB143_001129"
     CDS             3862..4926
                     /locus_tag="SB143_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbG/VirB9 family P-type conjugative transfer
                     protein"
                     /protein_id="HEF9749671.1"
                     /translation="MRKYSKIAFLALFVNLTAFADNIQIQDVPNPNVNTGESILQTKD
                     QTLNNYTQTNIKIDPLGNQVQTIDNSSYANPQYQVQAFDTYSQSNGEQLSEEQIALMK
                     SAIRNQNLNALQRRFFQKKYSGFENTLNLEYQPNKTQKIRTRFAMATTLIFETDITNY
                     ILGDTTGFKVEEIPSMPNAIAIKPMLIGIDTSLTIFTKDNKLHTFYIFSTDYKNSKDP
                     SLVIYIHDENSKEMIKEKQEKLAKDYLIIKEGIAEVRVKKSEIYNHYSQKAKKGDEWL
                     ISEEIFNDKKFTYFKYDKDKMPQVPAIFAVIDKQDSPVETRIIGNYVIAETTSKKFTI
                     KSGDSYVCVERLDQNKKVKK"
     gene            4923..6041
                     /locus_tag="SB143_001130"
     CDS             4923..6041
                     /locus_tag="SB143_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA type IV secretion system protein ComB10"
                     /protein_id="HEF9749672.1"
                     /translation="MKKSFLSLSLATILLSNNLFAEDIFNQITEENVSKKDDQSQNLL
                     NKEDLDYLFKNSDTKFPVTDYIYKGGFKEPNEEIKIHNEEKPKKEDDNATKLAKIEEK
                     KQELIQKNQQIVKEIHQDNISSQERKIKKLIRDSILADRGNTQIYFQENTSKYGVDGF
                     SNQKSIDLSTNEHRLYRMIRAGRLIPALLTSAISSDLNGIVTAQIEQDIYASMGSAVL
                     IPRGSKAIGFYKNDNKIGQNRLEIQWREIITPQGVNILLTNALASDNMGMAGAVGSVN
                     NKYIERYGIPYALSTISNVLLLSIASKTGNNNYAQEVYSQSKNDVSTIVSDIIQQQSQ
                     IKPTIEIKSGSRIFIVPTNHMWFAKPKNGEVLIQYFNN"
     gene            6058..6687
                     /locus_tag="SB143_001131"
     CDS             6058..6687
                     /locus_tag="SB143_001131"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749673.1"
                     /translation="MKTNYTELERKEGQINGIPYTVLKVEYPNLKELKDNDLLMKNDK
                     GQWLCGYVGLEHEQKLDFDKIGNEVCIAPVYLPKFDTDLFKNNPKVTKIVYFDQNHSW
                     NRSRINTQLDEDLCLKDIEKIINHIIEHNKIKNKNFTLNDELEKQINDNVSLLQKKGA
                     IYTQIALKKLINTTKNKIKTAKENNIKINDKTLNNFNQIVKKHNFQLEL"
     gene            6701..6913
                     /locus_tag="SB143_001132"
     CDS             6701..6913
                     /locus_tag="SB143_001132"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749674.1"
                     /translation="MQEISNYEKIKKDIEEGIQKRKEEDKKNKKIISQIKIINSLENK
                     IKKEKEKLSKLVENENSKQMEQNNEQ"
     gene            6903..7856
                     /gene="tadA"
                     /locus_tag="SB143_001133"
     CDS             6903..7856
                     /gene="tadA"
                     /locus_tag="SB143_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Flp pilus assembly complex ATPase component
                     TadA"
                     /protein_id="HEF9749675.1"
                     /translation="MSNNTIVLNNILNVLKPYLEMEANELIFNKPCEIKVDKGDIWET
                     IYDERLNYNFLETFLIELAIKRNQRFDEKHCHLSCELPYPFLRYRVQAQHKTSLFNSE
                     ICICIRIPSKSRFALENFVLSDKCLEKGWTYEKIKDLIKNKKNVLVSGGTGSGKTSFL
                     NSLMGEIDPNERIVTIEDAQELYIENENKTQLAVPKEESEIYSYQTAINNAMRLRPDR
                     LFLGEIDIRNTFTFLRVNNTGHAGNLSTLHANNPEDAIKAIITNIILGGGLQNPDNKM
                     LTELIITAIDFIIQITRNKKTGKRDITDILDLKNDYAKLLI"
     gene            7866..8273
                     /locus_tag="SB143_001134"
     CDS             7866..8273
                     /locus_tag="SB143_001134"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="HEF9749676.1"
                     /translation="MGTIRVYLNEYEQRQLKKLSIKRNESQSAVIRKLISVEKYAKTL
                     EILEKNNEINVEYLYHIAQCGNNLNQIAYHLNIGIESPSQTQNRLPKLIEELSQILNE
                     HKEHIKNKAIKTNINKKIKRLSPDENFIGEENQ"
     gene            8270..10156
                     /locus_tag="SB143_001135"
     CDS             8270..10156
                     /locus_tag="SB143_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEF9749677.1"
                     /translation="MNDKKITPAKWVLMFITSIILGIILYLLMVKIIFKPDLLVTHQV
                     GLQILHNLGNPALKLKAYVAVFALILPFIVCLIWFFMPQMNLKENYGNARFAKEKDFE
                     EMNICNDRGLILGCNIKKGIKGDEIEYIRAKMPLSALVVAPPGTGKTSGIILPNLFTV
                     PNSTLALDIKGELYAKSAGYRKKYFNNEILLFEPFSDNNTLFFNPFDNSIVKDMNFIQ
                     MMKLADQIAGTIFVAEKGKEGDHWVTSAKTLFTFFALYNMQKHKHTSLGDLTQAPKKD
                     YFNELNEEFGKECLIEDEDTGEVSRDYNVDTFKVFLKQVANDENLDEIVRNQARAYQT
                     AAEQEFAGIKSTYDTYMKVFTNPQVANATSKMNFRFEDLREKRITMYVVIQTEDMDIL
                     APLVRIFIESLFKKLMSGQENSNPDKFIYCLLDEFVRFGKMPFLLESPALCRSYGLIP
                     VFVTQSYEQIRKYYGEDDLGIIRANAGYQTIFRMNTEKDAKEISDLIGDFTREKTSSS
                     KGTFDFFKSNNTVSKEGYKLITSQDIKNQSSEDILILVTGFLSRPIKAKVPYWFKNPK
                     LKGADKISLEDNNTNTEGGSKNDEINNDDSQNINQEQNFTQENSSSKQIFELEELGIK
                     VKKE"
     gene            10185..>10780
                     /locus_tag="SB143_001136"
     CDS             10185..>10780
                     /locus_tag="SB143_001136"
                     /inference="COORDINATES: protein motif:HMM:NF014581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEF9749678.1"
                     /translation="MKFNIDKLEYANFAKEEEFEEMDIVKGKNKEGICFGETNRKIEI
                     KANNPNSVLLMAEAGTGSVSTFITPNLLKISNSSIVLDFEREIYDKTSEHRKKHLNNE
                     ILLFEPFSDDNTLFFNPFDNSIIENMNLEELSDFAFKIAKAIFDGNEIGIEKDLFVLF
                     ILHNCKNIFLSNLSKISLNFEQFLDFLEKIKNNNSDVV"
BASE COUNT         4446 a         1388 c         1682 g         3264 t
ORIGIN      
        1 ggagattatt tatgaaaaat atttttcaaa aaattttaac actcatctta atatcgccaa
       61 tgtttcttct tagtgctgat ggtggaaata ttgcttcaaa gctagcaaat agtgtaaatc
      121 agcaagttac tgatgtcggg agtagtcttt caagcattgt taatacaata gcaattgtaa
      181 tgggcgtgat ttggatcgtc attatgcttt taatggcttt ttttaatatg gaaggaatta
      241 aaaatcacgc taaattattg tttggagctt tggtaattat cggtgttgtc tacgggcttt
      301 cggctgcagg aatgaattga tgatagaaac aagctgttat cgtgatttaa cgcgtaaaac
      361 taagattaaa ggcttaacca gcacaagttg gtttgcctta atcattttag gatttattgc
      421 gtggtttttt ttggttttat actcactcat tgtaatcgct tttctttatt gctttttctt
      481 tattttagaa tttttagatg aagatattta tcaaatcatt tttgcaaaat tgtcaatacc
      541 gcaaaacaaa tattatgctt agggttaaaa aatgggaaca agtattttta cttatttaaa
      601 agagcttaaa aataaaccta aaaaagaaaa tttaggaaag aaagagaaga aaaattttaa
      661 agaatatata aataaaataa ataggggaac tgataatatt ttgatgttag cagagccaaa
      721 aattttcaca atggctaaag aaaataacat agcttttaag cttgatgaaa atattttagt
      781 tacaaaagac gggaatttat gtgtaggaat ggaaattaaa ggaatttctt actcgggaac
      841 ttcacttgaa gaagagttat cttacctgca aaatcgcgtg caattttttg gaaaaattag
      901 cacagatata gaaattaatc taattattaa aaaagacaaa atagaactta caaaacaagt
      961 ttctcaatcc aaaaatattt ttgcaaatca aattatagaa aagtgggaaa atcataagga
     1021 cgcttttcaa attacttact tcctgttaat atcaactatt gataaaaaaa taagcggagc
     1081 tttggaaact tttaagaata aagcaaccaa agaaaaagag caaagcaagg aagaaaaaga
     1141 aagttttagt attgaagcta aaaaaaatat cataaatgaa actttaaatg aagcaaaaag
     1201 ggctttatct atatttaatc caactcaaat cacggctgat gatattttaa atttctatgc
     1261 aacctactcg aatgcacaag aaactaaatt taaatataca aatgagttga tcactgatag
     1321 ttatattagc tcgaatgtag aatttaaaaa agattatatt ttatttgaaa gaaacgacgg
     1381 aaaacaaatg ttttcaagat ttataagcat aaaagcatat gaaaccgaca tcatttcatc
     1441 taatataact acaaaaattc taagaagttc tagtgatttc ataattttta tgaatatgca
     1501 ggcatacgaa aaagaaaaag cgattaaaaa ggtaaaagat acaggagcat ttgcaccaca
     1561 aattataaaa gatgaactta acggacttat cgaaataata aaagccgaca gagaaaattt
     1621 aatgcttgtg agcttttcag tttatatttt agctgaaaat ttggaagatt tggaaactaa
     1681 aacaaatgag cttaaaggaa ttttagcaaa tcagaaccta aacattgtca gagaaaccat
     1741 aaatcaaaag gctttatact tctcattttt tccaagcaga gcaaacttaa acgctaggaa
     1801 aagaacccta aaggtttcaa atttagctag catagccaat tttgaaaaag atgtcttagg
     1861 ttttgcaaaa aatgattggg gcgaacagcc agtaactatt tttagacatt taagtggaac
     1921 tccttatctt tttaattttc attggacgga tcaaggagat aagccaagcg gacatactat
     1981 gattataggt ggaacaggtg caggaaaaac aacattagct caatttttaa tgtgtaatct
     2041 ttacaagtat gatattgata ttttttctat ggataagctt cgcggtatgt ataatttcgc
     2101 aacttataca gacggagagt atcacgacgc tgattttagt gattttaaac taaatccgtt
     2161 tgcattgcct tatacaagtg aaaataagtc ttttttacaa aactttattc aaaaaatggc
     2221 taatatcgaa gataatcaat ataacgctgt aaatgaaatt tcaaagacga tagaaaggct
     2281 ttacaataat aaacttgaag aagatatctt tactctaagc gattttattg atagccttca
     2341 acacgaagag aatgatatta aaggacgctt aagacctttt caaggtagta tttttgataa
     2401 taagcaagac gctttaagtt ttagcaaaca gttatcaatt ttaaatatgg atagtatttt
     2461 aaaaaatcct acgctagcaa gtttaaccgc ttcttatatc tttcatagac taaaaaattc
     2521 agctaaaaat tctaaaaaaa ggggattttt ttgttttata gatgagttaa aagatttctt
     2581 aatggatgaa aatatgcgtg aaagcattct cgaaagcatt ctcgaagtta gaaaaattgg
     2641 tggggttatg tgtatgggat ttcaaaattt aagctttttt gatgatatcc caaaaggagc
     2701 aagcttttta gaaaatatag caaactatat tatttttcca acgacgaacg cacaaactct
     2761 tgacaatatg agaaataagc tcaacttaac accaacagag cttaaatttt tacaagaagc
     2821 aggaacaaat tcaagacaag ttttattaaa aatgaacctg tcaaatcaat cggctatttt
     2881 aaatgtagat cttagtcgtt taggaaagca tttaagagta ttctcatcat caagcgataa
     2941 tgtgatgtta atgaaagagc ttaaagaact ttatccaaat gattggagaa atatgtatct
     3001 tgaaaatcaa aaaccaaatt taaatcaagg agttaaataa tgaaaatttt aaaaataagt
     3061 attttgacaa taactattat tttttttagt gcgtgtgcca ctacaaataa agaaattcct
     3121 aaaaaatcgc cgtgcgcgtg caattatgat gtaattaaga ttagttaaaa gggaagggta
     3181 aaaaatggct tttattgatg ataagaaaga tccaaatttt atatttcagc ttgagagaaa
     3241 tataaaagcg tatatgctat atattattat agctttaact acgattgtag tttctcttgc
     3301 cattgctatt gcttttcttg ccccttttaa agaagtaaag ccttatttag tatttttctc
     3361 agacggcgaa accaattttg taaaagtgga gcaagcagga atggatatga gagccgatga
     3421 gaatttatta aagtcaattt tagcaggcta tgttaaaaaa cgcgaaacca taaatcgcgt
     3481 cgatgatagt gagagatacg aagaaatcag acttcaatct caaaaaaatg tgtggcaaac
     3541 cttttcgaac ttagtaaaag ctccaaattc tatttatact acacaaggag tttttagaag
     3601 cattgaaatt ataaatgttt caatttttaa taaaaatgta gctacgatcg attttatagc
     3661 aaaaataact aatagagatg gtagtgagaa ccatttaaaa aaatatcgtg ccacattatt
     3721 ttttgatttt ataccaatgg agcttaccta taactcagtt ccaaaaaacc ctacaggctt
     3781 tatagtcaaa caatattcga ttacagatat tattgacaaa gataccttta acaccacaca
     3841 acaaacgcaa ggagcgaagt aatgagaaaa tattcaaaaa tagcttttct agctttattt
     3901 gtaaatttaa cagcttttgc tgacaacata caaattcaag atgttcctaa ccctaatgta
     3961 aatacaggcg aaagcatttt gcaaactaag gatcaaactt taaataatta tacacaaacc
     4021 aatattaaaa tcgatccttt gggtaatcaa gtgcagacaa tagataattc aagttatgct
     4081 aatccgcaat accaagttca agcctttgat acttactctc aaagcaatgg agaacagtta
     4141 agcgaagagc aaattgcttt aatgaaaagt gcgattagaa atcaaaattt aaatgcttta
     4201 caacgaagat tttttcaaaa aaaatattca ggtttcgaaa acacattaaa tcttgagtat
     4261 cagcccaata aaacgcaaaa aataagaact cgttttgcaa tggcaactac tcttattttt
     4321 gaaacggata ttacaaatta tattttaggc gatacaacag gatttaaggt agaagaaatt
     4381 ccaagtatgc ctaatgcaat agccattaaa cctatgttaa taggcattga tacttcttta
     4441 accattttta ctaaagataa taaacttcac actttctaca tcttttcaac cgattataaa
     4501 aacagtaaag atccttcttt ggtaatttat atacacgatg aaaattcaaa agaaatgatt
     4561 aaagagaaac aagaaaaatt agcaaaagat tatttaatca ttaaagaagg tattgctgaa
     4621 gtccgagtta aaaaaagtga aatctataat cactatagcc aaaaagcaaa aaaaggcgac
     4681 gagtggctta ttagtgaaga aatttttaat gataaaaaat ttacttattt taaatacgac
     4741 aaagacaaaa tgccacaagt tccagcaata tttgcggtaa ttgataaaca agacagtccc
     4801 gtagaaacaa gaattatagg aaactatgtt attgctgaaa ccacttcaaa aaaatttaca
     4861 atcaaaagtg gagatagtta tgtatgtgta gagcgtttgg atcaaaacaa aaaggttaaa
     4921 aaatgaaaaa atcattttta agcctaagtc ttgcaactat attgctaagc aacaatcttt
     4981 ttgcagaaga tatatttaat caaataaccg aagaaaatgt atctaaaaaa gatgatcaaa
     5041 gccaaaattt gcttaacaaa gaagatttag attatctttt caaaaattca gatacaaaat
     5101 ttccagtcac cgattatatt tataaaggtg gatttaaaga acctaacgaa gaaattaaaa
     5161 ttcataacga agaaaaacct aaaaaagaag atgataatgc cactaagtta gcaaagattg
     5221 aagaaaaaaa acaagaactg atacaaaaaa atcagcaaat tgtaaaagaa attcatcaag
     5281 ataatattag ttctcaagaa agaaaaatca aaaaactcat aagagatagc attttggctg
     5341 atcgcggtaa cacgcaaatt tattttcaag aaaatacttc aaaatacgga gtagacggtt
     5401 tttcaaatca aaaaagtatt gatctttcaa caaacgaaca tcgtctttat agaatgatac
     5461 gagcaggaag gctaattcct gcactcttaa caagtgcaat ttcaagtgat ttaaacggta
     5521 tagttactgc acagatcgag caagacattt atgcaagtat gggaagtgca gtattgatac
     5581 cacgcggaag caaagcgata ggtttttata aaaatgataa taaaatcgga caaaatcgct
     5641 tagaaataca atggagagaa attattacac cacaaggcgt aaatatactt ttaaccaatg
     5701 ctttagctag tgataatatg ggtatggcag gagcagtcgg aagcgttaat aataaataca
     5761 ttgaaagata cggaatacct tacgcactct ctacaatttc aaatgttttg ctacttagta
     5821 tagcgtcaaa aacgggcaat aataattacg ctcaagaagt ttattctcaa agcaaaaacg
     5881 atgtatctac tattgtcagc gatattattc agcaacaaag ccaaataaaa ccgacaatcg
     5941 aaattaagtc aggcagtaga atttttatag ttccaaccaa ccatatgtgg tttgccaagc
     6001 caaaaaatgg agaagtatta attcaatatt ttaacaatta aaacaaagga agatattatg
     6061 aaaacaaatt atacagaact tgaaagaaaa gaaggacaaa ttaatggtat tccatatact
     6121 gttttaaaag ttgaatatcc taatctaaaa gaattaaaag ataatgattt attgatgaaa
     6181 aacgacaaag gacaatggct ttgcggttat gttggtttag aacacgaaca aaagctagat
     6241 tttgataaaa taggaaatga agtttgcata gcccctgttt atttaccaaa atttgacacc
     6301 gatttattta aaaacaatcc aaaagtaaca aaaatagttt attttgatca aaatcattct
     6361 tggaacagaa gcaggataaa tactcaacta gatgaagatt tatgtttaaa agatatcgag
     6421 aaaataataa atcatattat tgaacataat aaaataaaaa ataaaaattt tactttaaat
     6481 gatgaattag aaaaacaaat caatgataat gtatctttgc ttcaaaaaaa aggagctata
     6541 tatactcaaa ttgctttaaa aaaactaatc aatacaacaa aaaacaaaat caaaacagct
     6601 aaagaaaata atataaaaat taacgataag acacttaata attttaatca aattgtaaaa
     6661 aaacataatt ttcaacttga actataaaag gagtaaaaaa atgcaagaaa ttagtaatta
     6721 tgaaaaaatt aaaaaagaca ttgaagaagg aattcaaaaa agaaaagaag aagataaaaa
     6781 aaataaaaag attatctctc aaattaagat tattaacagc ttagaaaata agataaaaaa
     6841 agaaaaagaa aagcttagca aacttgtaga aaatgaaaat tcaaaacaaa tggaacaaaa
     6901 caatgagcaa taatactatt gttttaaata atatattaaa tgttttaaag ccttatttag
     6961 aaatggaagc aaatgagctt atttttaata aaccttgcga aattaaggta gataaaggtg
     7021 atatttggga aacaatatat gatgaaaggt taaactacaa ttttttagaa acttttctaa
     7081 tagaacttgc tatcaaaaga aatcaaagat ttgatgaaaa acattgtcat ctttcttgtg
     7141 agttacctta ccccttttta agatataggg tgcaagcaca gcataaaaca agtcttttta
     7201 attctgaaat ttgtatttgt attagaatac cttcaaaaag tcgttttgca cttgaaaatt
     7261 ttgttttaag tgataagtgt ttagaaaaag gttggactta tgaaaaaatt aaagatttaa
     7321 ttaaaaataa aaagaatgtt ttagtctcag gcggaacagg aagtggaaaa actagctttt
     7381 taaattcttt aatgggtgaa attgatccaa atgaaagaat tgtaactatt gaagacgccc
     7441 aagaattata tatcgaaaat gaaaacaaaa cccaacttgc agtcccaaag gaagaaagcg
     7501 aaatctactc atatcaaacc gcgattaata atgctatgcg tttaagaccc gataggttat
     7561 ttttaggcga aattgatatc agaaatacct ttacattttt aagggtaaat aacacaggac
     7621 acgcaggaaa tttaagcacc ttgcacgcta ataatcctga agacgccatt aaagcaatta
     7681 ttacgaatat aattttaggt ggtggcttgc aaaaccctga taataaaatg cttacagaat
     7741 taatcataac agcaattgat tttatcatcc aaattacaag aaacaaaaaa acaggtaaaa
     7801 gagatattac agacatttta gatttaaaaa atgattacgc aaaattatta atctaaggag
     7861 ttagtgtggg aacaatcaga gtttatttaa atgaatacga gcaaagacaa ttaaaaaaac
     7921 tttcaataaa aagaaatgaa agtcaaagtg ccgtcattag aaagcttata agcgtagaaa
     7981 aatacgcaaa aactcttgaa attttagaga aaaataatga aattaatgtc gaatacctat
     8041 accacatcgc acaatgcgga aataacctaa atcagattgc ataccattta aatataggaa
     8101 ttgaaagtcc ttcgcaaacc caaaaccgct tacctaaact gatagaagaa ttatcacaaa
     8161 ttttaaatga acacaaggag catattaaaa acaaggcaat taagacaaat attaataaaa
     8221 agataaaaag attaagtcct gatgaaaatt ttataggaga agaaaatcaa tgaatgataa
     8281 gaaaataact cctgcaaaat gggtattaat gtttataact agcattattt tgggaataat
     8341 tctttattta ttaatggtaa aaattatttt caaacctgat ttattagtaa cacatcaagt
     8401 tggcttacaa atacttcata atttaggaaa ccctgcatta aaacttaaag cttatgtagc
     8461 agtttttgct ctcattttgc cttttatagt ctgtttgatt tggtttttta tgccacaaat
     8521 gaatttaaaa gaaaattacg gaaatgcaag atttgctaaa gaaaaagatt ttgaagaaat
     8581 gaatatttgc aatgataggg gtttaatttt aggttgtaat attaaaaaag gtataaaagg
     8641 cgatgaaata gaatacatca gagctaaaat gcccctaagt gcgttggtgg ttgcaccacc
     8701 aggcacaggt aagacttcag gtatcatttt acctaattta tttacagttc ctaattctac
     8761 tttagcactt gatattaaag gcgaacttta tgcaaaaagt gcaggttata gaaaaaaata
     8821 ttttaataat gaaattttat tatttgaacc tttttcagac aataatactt tatttttcaa
     8881 tccttttgat aattctatag ttaaagatat gaattttatc caaatgatga aattagcaga
     8941 tcaaatcgca ggaactatat ttgtagctga aaaagggaaa gaaggcgatc attgggttac
     9001 aagtgcgaaa actcttttca ctttttttgc attatacaat atgcaaaaac acaaacatac
     9061 gagtttagga gatttaactc aagctccaaa aaaagattat tttaatgagt taaatgaaga
     9121 attcggaaaa gagtgtttaa ttgaagatga agatacagga gaagtttcaa gagattataa
     9181 tgtagatact ttcaaagtat ttttaaaaca agtggctaat gatgaaaatc ttgatgagat
     9241 cgttagaaat caagcaaggg cttatcaaac ggctgccgag caagaatttg caggtattaa
     9301 atcaacttat gatacttata tgaaagtttt cactaatcca caagtggcta atgcaacttc
     9361 aaaaatgaat tttagatttg aagatttaag agaaaaaaga attactatgt atgtagtaat
     9421 acaaaccgaa gatatggata tattagctcc tttggtgcgt atttttatcg aaagtttatt
     9481 taaaaaacta atgagcggac aagaaaattc taatcctgac aaattcattt attgcttatt
     9541 agatgaattt gtgagatttg gaaaaatgcc ttttttactt gaatcacctg cattatgtag
     9601 atcttatgga cttattcctg tatttgtaac tcaatcatac gagcaaatta gaaaatatta
     9661 tggcgaagat gatttaggaa ttattagagc aaatgcaggt tatcaaacta tttttagaat
     9721 gaatacagaa aaagacgcta aagaaattag cgatctaatc ggcgatttta ccagagaaaa
     9781 aacatcatca tcaaaaggaa cttttgattt ctttaaaagt aataacactg tatccaaaga
     9841 aggttataaa ttgataactt cacaagatat taaaaatcaa tctagtgaag atattttaat
     9901 tttggtaaca ggatttttat caagacctat taaagctaaa gtgccttatt ggtttaaaaa
     9961 tccaaaactt aaaggagcgg ataagatttc tttagaagat aataatacta atacggaagg
    10021 aggaagcaaa aatgatgaga ttaataatga tgatagccaa aatattaatc aagaacaaaa
    10081 ctttactcaa gaaaattcaa gctctaaaca aattttcgaa cttgaagaac taggaataaa
    10141 ggtaaaaaaa gaataaaaac aataaaaaat aaaaggagaa acaaatgaaa tttaatatag
    10201 ataaattaga gtatgctaat ttcgccaaag aagaagaatt tgaagaaatg gatatagtta
    10261 aaggcaaaaa taaagaagga atttgctttg gagaaactaa tagaaagatt gaaatcaaag
    10321 ctaataatcc aaatagtgtt ttattaatgg ctgaagcagg cacaggaagt gtttctactt
    10381 tcattacacc taatctttta aaaatatcaa attctagtat agtattagat tttgaaagag
    10441 aaatttacga taaaacttca gagcatagaa aaaaacatct caataatgaa attttattat
    10501 ttgagccttt ttcagatgat aatactttat ttttcaaccc ttttgataat tctattattg
    10561 aaaatatgaa tttggaagaa ctaagtgatt ttgcatttaa aatagcaaaa gctatttttg
    10621 atggaaatga aatagggata gaaaaagatt tatttgttct ttttattctt cataattgta
    10681 aaaatatttt tttaagcaat ctatccaaaa tttcactaaa ctttgaacaa tttttagatt
    10741 ttttagaaaa aattaaaaac aataattctg atgttgtttt
//
LOCUS       DARAII010000055        10762 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.055, whole genome shotgun sequence.
ACCESSION   DARAII010000055 DARAII010000000
VERSION     DARAII010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10762
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.055"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..929)
                     /locus_tag="SB143_001137"
     CDS             complement(<1..929)
                     /locus_tag="SB143_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015016418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEF9749679.1"
                     /translation="MNNIKIKLSVIANSIAIFALSILSIISFYFTKDSLYQSTLHAET
                     DLLKATQISIEDFRSRNISLLNTLEKDILNLPYEALNSQDNIINNAGAILKYYRNSGN
                     LLAVYIGLDNGENIVSDDLSEKKNTNITINGKANNYNATTREWYKEARNSNQMYITPA
                     YIDVVSNEYAITYSKALYKDGKFIGVLGIDVLLTSLQDRIARTPGNTFVFDHKDRIFA
                     ATNKALLDPSVDHSPVLNAYKAHGDNNFFSYKLNNEERLGVCTKVFAYTACITESTDV
                     INKPIFKAAYIQVIALIIMISISIILLYFIVSK"
     gene            1040..1469
                     /locus_tag="SB143_001138"
                     /pseudo
     CDS             1040..1469
                     /locus_tag="SB143_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838811.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
     gene            complement(1478..2507)
                     /gene="acr3"
                     /locus_tag="SB143_001139"
                     /pseudo
     CDS             complement(1478..2507)
                     /gene="acr3"
                     /locus_tag="SB143_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858915.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite efflux transporter Acr3"
     gene            complement(2501..2923)
                     /locus_tag="SB143_001140"
     CDS             complement(2501..2923)
                     /locus_tag="SB143_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase ArsC"
                     /protein_id="HEF9749680.1"
                     /translation="MKLAFICIHNSCRSQMAEALARHKAEKMGVDIEVFSAGSDTSKG
                     VNSQAIRLMREIYQINMKKHYSKLIDSLPQNLDIVVSMGCGVACPSLKSRYYFDFGLK
                     DPSGSYDDEFKKIIQILDYKITALLQAIKTNSLKDFTC"
     gene            complement(2920..3237)
                     /locus_tag="SB143_001141"
     CDS             complement(2920..3237)
                     /locus_tag="SB143_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEF9749681.1"
                     /translation="MQKFLTIISAINDESRVLILYHLLKYQELCVCDLQKLLNMGQSR
                     LSRHLKILKDAGFLYVKRKGTWAYYGINDDLLKLHSDLFENIKNLDIDNIVLEQNTCE
                     NDK"
     gene            complement(3247..4152)
                     /locus_tag="SB143_001142"
     CDS             complement(3247..4152)
                     /locus_tag="SB143_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEF9749682.1"
                     /translation="MQVFFNTFKEFLYLFVELSVLFIGINILVAFLNAKYSNFFEKHL
                     KQDNFQTRLKAIFFGSLTPFCSCSSIPLLNAFLKAKVPLSVCMAYLITSPLINPIIIV
                     VFIVSFGIKISFIYIGFLYAIILFISFLLSKFDTSKFLNNDFLENEFNEKSSCCSTKK
                     CCSSKTHINLKQICIDSLKEYKKILPYALAGTFIGALIHGVFPSNFFEIYLKDYGILG
                     VFIAAFIGVLLYMNCTAMIPVALVLTQTGIPLGIMMSFLIAGSGCSLPELILLKRNFK
                     TSFLILFALLIILIAILFGILMFFI"
     gene            4301..5494
                     /locus_tag="SB143_001143"
     CDS             4301..5494
                     /locus_tag="SB143_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749683.1"
                     /translation="MQALNQEKFNSLSDIKIILVLCLGVFGILSTELGMMGIIPIVSQ
                     NFSVSISDAGWSVSIFALVITFCAPIVPLLCANFNPKKLMLVCLAVFILSSLIAAFVS
                     EFWQLLVFRAIPAFFHPIYIALALSMAANLASDKKDIPKNVGKIFAAVSAGMVLGVPL
                     TSYLGGNFGFEISMLLFVFLNLLSFVATLFFVPNFKKENKVKIGKQLLILRYPLLWIS
                     ILCVVCINAGIWGFYSYFSDFLLSISKINFDLISIILALYGFANIIGNNLAPKLLIKN
                     VNLNLIFTLLLMIGIYVLIFNFYYQNMILMILAFILGILGGVMNNGTHFLISHPFPRA
                     KDFTNGLFISVANIGLSVGTAICGLVISLSNTRFIAISSVILLSFGIVIILLRDKIQS
                     MKLRF"
     gene            5498..5770
                     /locus_tag="SB143_001144"
     CDS             5498..5770
                     /locus_tag="SB143_001144"
                     /inference="COORDINATES: protein motif:HMM:NF012472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEF9749684.1"
                     /translation="MKYQILNNGLKIPIVGFGTARLQGRECFKVLNNALECGYRLIDT
                     AQMYKNHKDIAKVLKESQIPRKELFIESKISQNLSYLQAKDMIYKS"
     gene            5797..6297
                     /locus_tag="SB143_001145"
     CDS             5797..6297
                     /locus_tag="SB143_001145"
                     /inference="COORDINATES: protein motif:HMM:NF012472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEF9749685.1"
                     /translation="MLLIHEPYENSLQIYDAMQEAFENKLIKSLGVSNFNENLLFDFI
                     QKVTIKPVINQCETHLLYQQKSLHKALQKHDIFLQSWGPFIANKNKIFNHPLLLCMAK
                     KYSKTPAQIILNFLYKLGILLIPKSSNLQRMKQNLQIFDFELEDEDTQKLIYLDQNKS
                     FFGWYD"
     gene            6373..7392
                     /locus_tag="SB143_001146"
     CDS             6373..7392
                     /locus_tag="SB143_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEF9749686.1"
                     /translation="MKNNFFKLLLMVLLIGGANMLYATTWDKVFTRSDKVKIQKVTFK
                     NRYGITLVGDLYIPKNAKSKKLSAIAISGLFGAVKEQASGFYAQTLAELGFVVLAFDP
                     SFTGESGGSPRNVASPDINTEDFSAAVDFLSNLANVDPSKIGILGICGFGGFALNAGS
                     MDTRIKAIVTSTMYDMSRVNAYGYNDSLDKQARYELKKKLNEARTKDFKNGTFELAST
                     LPQKLSGNEPQFIKEYWEYYKTKRGFHKRSINSNGAWNATSSLGFINAPILKFSDEIN
                     ASVLMIHGENAHSRYFSEDAFKNLKGDNKELFIVKNANHVDLYDNADKIPFSKIAEFF
                     KANLK"
     gene            7401..7823
                     /locus_tag="SB143_001147"
     CDS             7401..7823
                     /locus_tag="SB143_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749687.1"
                     /translation="MKKILFVIMLSSMLAFADLSNKGDLMQIKLLFNGKELLVNLEQN
                     EASRQFYNTLPLELEFSDFIGKEKIAHLPKALNAKGSSAYKPQIGDFFYYVPWGNIGI
                     FYELQNANEDLVFLGKIQGNLELLKMQKGDFKVKIIKK"
     gene            8060..>10762
                     /locus_tag="SB143_001148"
     CDS             8060..>10762
                     /locus_tag="SB143_001148"
                     /inference="COORDINATES: protein
                     motif:HMM:NF013601.1,HMM:NF024991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749688.1"
                     /translation="MRKDGLENNILIQILDIDRNINKNIVRNKEDRGFLSQNILNELR
                     NLLEHIALCIYNTDTNQQLDSIYENLQSSLKYIGDKRKYKDIKNFHNLLQISVSHYTP
                     NEEVAERLMLKYLFYLFQTRNFCKEFLDIQILNNLQEFPINLDTLSFQYYERVVDKIK
                     QTSMFNDTKTDKFYIQKVKPFIINEEIYYEITFTIAKDNVSKFDKLIAFSKYYIPSNY
                     STKLTLYYTNIKLLNLQIPVILILQWNIDIRPCEFTNFCLIFNSIRMSFTRSTKYEHF
                     MQFLTKEELNLLDIVKLKTEEYDEIKNQFSEDKLKHLFNCLDMAREIILNNKSGSNIL
                     SYILYAMNNQIIKKQIPKKKNSYQPNPKLSNLFLKNESIPFDEMPFCSNPAGHIPKLN
                     VLFECISLNNREYELLARKIQYNSEVNGSLYTSLEDFKEDNIEVLIEKYNTALYNGHK
                     KNRSIKKLHDKFLFINEYQDTLIEIIQLLNNFTKSGLDHYKENINEWLKECNQLDCKE
                     KKDYLSNLFCNSKLALIYGAAGTGKTTLIEHISSFFHDKNKLYLANTNTAVNNLRQRL
                     DIQNSSFSTVASYIANKNNISKKFDIVFIDECSTISNKDIFSVLDDIKLKCEILICVG
                     DIYQIESIRFGNWFLFAQKFFSDIQLELKHIYRTKSEKLQLLWERVRTLDESMLEAIE
                     KNNSSENIQNFNFSRSVNDEIILCLNYGGIYGVNNINKFLQENNPHKSFYFNGLSYKV
                     DDPILFNENSSRFGEEFHNNLKGTITNIEEDEKTINFTIKINKIIQSINNNFTIITKN
                     DKDTEIKFSVTRLNSDEEDDNSNIVPFQVAYAISIHKAQGLEYDKVSIIVADEIEEQI
                     THNIFYTAITRAKKELKIYWSAETENKILKSLKIKDINKDFHLFK"
BASE COUNT         4077 a         1319 c         1663 g         3703 t
ORIGIN      
        1 tattttgata cgatgaaata aaggaggatg atgctaatag atatcataat aattaaggct
       61 ataacttgta tatatgctgc tttaaatata ggtttattta ttacatctgt actctcggta
      121 atacaagctg tataagcaaa gactttagta caaactccaa gtctttcttc attatttaac
      181 ttataagaga agaagttgtt atcaccatga gctttatatg catttaaaac aggagaatgg
      241 tctaccgaag gatctaataa agctttgttg gtggctgcaa aaattctatc tttatgatca
      301 aaaacaaagg tattgcctgg agttctagcg attctatctt gtaaactagt taataaaaca
      361 tcaattccta aaacaccaat aaatttacca tccttataaa gagctttaga gtaagtaatg
      421 gcgtattcat tactaacaac atcaatataa gctggggtta tatacatttg attactattt
      481 ctagcttctt tataccattc cctagtagtt gcattatagt tgttggcttt tccatttata
      541 gttatattag tatttttttt ctcgcttaga tcatcactca cgatattttc accattatct
      601 aaaccaatat aaacagcaag caaatttcca ctattgcggt agtattttaa tatggctcct
      661 gcattattaa ttatgttgtc ttgagaattt agtgcttcat agggtaaatt taatatatct
      721 ttttcaagag tattaagcaa agatatattt ctggatctaa aatcctctat agaaatttgt
      781 gttgctttaa gaaggtctgt ttcagcatga agcgtacttt gatacaaaga atcttttgta
      841 aagtaaaagc taatgatgct caaaatactt aaagcaaaaa ttgcaattga atttgcaata
      901 acagaaagtt ttattttgat attattcatg tttttccttt taatctttgt tatttttagc
      961 ataaaactaa ataatttggc tattatttta tcacaaaaat aaaataaatt ttttattttt
     1021 atcttaaaaa ggagaaaata tggcttatac tataaaaaaa agtagaaaaa gaaacaaaaa
     1081 ttagtgctca tactttaaga ttttgggcta aaaaaggttt gtttcctttt gttcaaaaag
     1141 atgaaaatag tgtgaaatat ttttcaaaaa gcgatataga atgggcaaaa tggatagaat
     1201 ggcttagaat ttcaggtatg ccaatagaac aagtcaaaca ttatataaaa ctttgctctt
     1261 tgggtataaa aactgctaaa gaaagacaag agatgttaaa gcaaacaaag aaaaaattac
     1321 aaaaccagat taaaacatta aaagaaagtg aaaaagtttt aagcaaaaag ataaaaattt
     1381 atgaagaaat gcttgcaaat gaagtcgatg ggtttaatcc agaaagcaag gactatcaac
     1441 cttgcgataa gttttgtaaa gaatcatgaa gcttgattca ttttttagaa tttaaacttt
     1501 tgcctaatgc ccattttaca agtaagataa gtacaggaac ttctactaag gggcctataa
     1561 tgcttgcaaa agcttgttct gagtgaagcc caaaagtagc aatacaaatg attatagcta
     1621 attcaaagtt atttccacta gcactaaagc ataaagaaca agttttagga taagaaagat
     1681 gatttttctt agaaataaac caagttagaa aaaacatgaa gataaaatac aaagtcaaaa
     1741 caaaggctat ttttaaagct tctaaaggca ggtgaaatac ttcatttgct ttgtaagaac
     1801 acataatgat aatagttgct agcagggtga taagagttat agggctgatt ttaggtaaaa
     1861 aggtattttc gtaccatcgt ttgcttttgt attttaaaag tagggttctt gttataaagc
     1921 ccattaaaaa aggaattcta aataaatcaa aacattttta cttagagctg aaaaatctat
     1981 atctaaactt gtagctaaag tgctttgacc tggtaatttt ggtaaaaaat ctagataaat
     2041 ataagccaaa gtggaaaaaa aataaaattt gaaaaatgct attcatcgct actaaagcac
     2101 tggtgtattc tctatcgcct tttgctaaat cgctccatat caccaccatt gcgatgcatc
     2161 ttgccaagcc gatgatgata actccttgca tatataaagg ctcgtctttt aagaaaataa
     2221 aagctaagat aaacataagc aaaagggcct ataaaccaat ttaaaatcat agaaagcaag
     2281 ataacttttt tagaatcaaa tacctttgaa agctttgcat aatcaacctt agccaaaggc
     2341 ggatacatca tcaaaataag acataaagtc aatactacat ttacagactt gtactcaaat
     2401 aaattccaaa ataaagcgtt attggggaaa atgataccta aaattaaacc caaaaaaata
     2461 gctaaaaata tccaaagcgt gagaaatcta tcgataaaac ctaacatgta aagtccttaa
     2521 gagaatttgt ctttatggct tgtaaaagag ctgttatttt ataatctaaa atttgaatta
     2581 ttttcttaaa ttcatcatca taacttccgc taggatcttt taatccaaaa tcaaaataat
     2641 atcttgattt taagctagga caagccacgc cacaacccat acttacgact atgtctaaat
     2701 tttgaggcaa agaatcaatg agtttagaat aatgcttttt catattgatt tgataaattt
     2761 cacgcataag tcttatagcc tgtgaattta cacccttaga agtgtcgctt cctgcggaaa
     2821 atacttcgat atctacgccc attttttcag ctttatgcct agctagtgct tctgccattt
     2881 gagaacggca gctattgtga atacaaataa atgcaagttt catttatcgt tctcgcaagt
     2941 gttttgttct aaaactatgt tgtcaatatc tagattttta atattttcaa aaaggtcaga
     3001 gtgtagcttt aaaagatcat cgttgatacc ataatacgcc caagtcccct tgcgtttgac
     3061 atataaaaat cctgcatctt ttaaaatttt taaatgtctt gaaagtcttg attgccccat
     3121 gtttaaaagt ttttgcaaat cacacacgca aagttcttga tattttaaaa gatggtatag
     3181 gataagcact ctgctttcat cgttgatcgc tgaaatgatg gttaaaaact tttgcattaa
     3241 aatcctttat ataaaaaaca ttaagattcc aaataaaata gcaattaaaa taatcaaaag
     3301 ggcaaaaagt attaaaaaac ttgttttaaa attcctttta agtagaatta attcaggtaa
     3361 agaacaaccc gatcctgcaa ttaaaaaact catcatgatt cccaaaggaa ttcctgtttg
     3421 ggttaaaacc aaggccacag gtatcattgc tgtgcaattc atataaagca aaacacctat
     3481 aaaagcagcg atgaatactc ctaaaattcc ataatctttt aaataaattt caaaaaaatt
     3541 acttggaaaa accccatgta ttaatgcccc aataaaagtt cccgcaagag catagggtaa
     3601 aattttttta tattctttca ggctatcgat acaaatttgt ttaagattta tatgagtttt
     3661 gctagaacaa catttttttg tgctgcaaca actacttttt tcgttaaact cattttctaa
     3721 aaaatcatta tttaaaaatt tgcttgtgtc aaattttgac aataaaaatg aaataaataa
     3781 aataattgca tataaaaatc ctatataaat gaatgaaatt ttaatcccaa aactgactat
     3841 aaaaactaca attataatag gatttattaa gggcgaagtg ataagatagg ccatacaaac
     3901 gctaagtggt actttggctt ttaaaaaagc atttaaaagt gggattgatg agcaagaaca
     3961 aaatggcgtt agagaaccaa aaaatatagc ttttaggcgt gtttgaaaat tatcttgctt
     4021 taaatgtttt tcgaaaaaat ttgaatattt tgcatttaaa aaagcaacta aaatattgat
     4081 tcctataaaa agtacagaaa gttcgacaaa tagatacaaa aactctttaa aagtgttaaa
     4141 aaatacttgc attgtttttc ctaaaaaatt tttagagcag tgtaatataa atttattaat
     4201 atatcaagat atatttatat attgatttta taaattacca cttgacttag agctactctc
     4261 atcttttata attgcaaaaa ttttaaaata aagggcaaaa atgcaagctt tgaatcaaga
     4321 aaaatttaat tctttatcgg atataaaaat tattttagtg ctgtgtttag gcgtatttgg
     4381 gattttaagc acagagctag ggatgatggg tataattcct attgtttctc aaaattttag
     4441 tgtaagtatt tcagatgcag gttggagtgt gagtattttt gcacttgtga ttactttttg
     4501 cgctcctatt gtcccgctac tttgtgcaaa ttttaatccc aaaaaactta tgcttgtttg
     4561 tttagctgta tttatcttaa gctcgttaat cgctgctttt gtgagtgaat tttggcaatt
     4621 gcttgttttt agagctattc ctgcattttt tcatcctatc tatatagcac tagctttaag
     4681 catggctgca aatttggcat cggataaaaa agatattcct aaaaatgtag ggaaaatttt
     4741 tgcagctgtg agtgcaggta tggttttagg agtgccactt actagttatt tgggtggaaa
     4801 ttttggcttt gaaatttcga tgttgttatt tgtgttttta aatcttttat cctttgtggc
     4861 tactttattt tttgtgccga atttcaaaaa agaaaataag gtcaaaatag gcaagcaatt
     4921 acttatttta aggtatccgc ttttatggat aagcatactt tgtgttgttt gtatcaatgc
     4981 tggaatttgg ggattttatt cttatttttc tgatttttta ttgagtattt cgaaaataaa
     5041 ttttgattta atcagtatta ttcttgctct ttatggtttt gctaacatta taggcaacaa
     5101 tcttgcacca aaactgctta taaaaaatgt taatttaaat ttgattttta cacttttgtt
     5161 gatgattgga atttatgtac ttatttttaa tttttattat caaaatatga ttttaatgat
     5221 actagctttt attttgggta ttttaggtgg agtgatgaat aatggaaccc attttttaat
     5281 aagccatcct tttcctagag caaaagattt tactaatggg ctttttataa gcgttgcaaa
     5341 tataggactt agtgtcggca ctgctatttg tggacttgtc atttctttaa gcaatacgcg
     5401 ttttattgct ataagttctg ttattttact aagctttgga attgtcataa ttttattaag
     5461 agataaaatt caaagtatga aattaaggtt ttaatttatg aaatatcaaa ttttaaacaa
     5521 tggtttaaaa atccccattg tgggttttgg tacagctaga ttgcaaggaa gagaatgttt
     5581 taaagtatta aacaatgctt tagaatgtgg gtatcgtctt attgacactg cgcaaatgta
     5641 taaaaatcat aaggatattg ctaaagtttt aaaagagagt caaattccta ggaaggaact
     5701 ttttatagag agtaagattt cacaaaattt aagttatttg caagcaaagg atatgattta
     5761 taaatcttag atgaacttga tttagaatac ttagatttgc ttttgatcca tgaaccttat
     5821 gaaaacagcc ttcaaattta tgatgctatg caagaagctt ttgaaaacaa gcttataaaa
     5881 tctttagggg tgagtaattt taatgaaaat ttactttttg attttataca aaaagtaacg
     5941 ataaaaccgg tgattaatca atgcgaaact catcttttat atcaacaaaa atctttacac
     6001 aaagcacttc aaaaacatga tatatttttg caatcttggg gtccttttat agcaaataaa
     6061 aataaaattt ttaatcatcc tcttttactg tgtatggcta aaaaatattc aaaaactcct
     6121 gcgcaaatta ttttaaattt tctctataag cttggtattt tacttatccc taaaagttct
     6181 aatttgcaaa gaatgaaaca aaatttgcaa atttttgatt ttgaattaga agatgaagat
     6241 acgcaaaaac taatctattt ggatcaaaat aaaagcttct ttggatggta tgattgattt
     6301 tttaaaaaaa actcttgact tagagctact ctcatctttt ataattgcaa aaatttgaaa
     6361 aggagattta caatgaagaa taattttttt aaattattgc ttatggtttt attgattgga
     6421 ggtgcaaata tgctgtatgc aactacttgg gataaggttt ttactcgaag cgataaggtt
     6481 aaaatacaaa aagtcacttt taaaaatcgc tatggcatca ctttggttgg ggatttatat
     6541 atcccaaaaa atgcaaaatc caaaaagctt agtgcaattg cgattagcgg tctttttgga
     6601 gcggtaaaag agcaagcttc aggattttat gcgcagactt tagctgaatt gggttttgtt
     6661 gttttggctt ttgatccttc ctttacagga gaaagtggag gaagtcctag aaatgtggca
     6721 agccctgata tcaacacaga agactttagt gcggcggtgg attttttaag caatcttgca
     6781 aatgttgatc ctagtaaaat aggcatttta ggaatttgtg gttttggtgg ttttgcttta
     6841 aatgcaggtt ctatggatac aaggataaaa gctatcgtaa cttctacaat gtatgatatg
     6901 agcagggtta atgcttatgg atataatgat agcttagata aacaagcaag atatgagcta
     6961 aagaaaaagt taaatgaggc acgcacaaaa gattttaaaa acggtacttt tgagctagcg
     7021 tctactttac cacaaaaact tagcggcaat gagccacaat ttatcaaaga atattgggag
     7081 tattataaaa ccaaaagagg ttttcataaa agatcgatca attcaaatgg tgcgtggaat
     7141 gcgacgtcat cgcttggctt tataaatgct cctattctta aatttagcga tgagataaat
     7201 gcttctgtgc ttatgataca tggagaaaat gcacacagca gatattttag cgaagatgct
     7261 tttaaaaatt taaaaggcga taataaagag ctttttatcg taaaaaatgc taatcatgtg
     7321 gatttgtatg ataatgcaga taaaatccct tttagcaaaa tcgcagaatt ttttaaagca
     7381 aatttaaaat aaggaaagag atgaaaaaga ttttatttgt aataatgcta agtagcatgc
     7441 ttgcttttgc tgatttatca aacaagggag atttaatgca aataaaatta ctttttaatg
     7501 gcaaggaatt acttgtaaat ttagagcaaa atgaggcttc aaggcagttt tataacactt
     7561 tgccattaga gctagaattt agcgatttta taggaaaaga aaaaatcgca catttaccca
     7621 aagcattaaa tgcgaaagga agtagtgctt ataagccaca aattggggat tttttttatt
     7681 atgtgccttg gggaaatatc ggaatttttt atgaattgca aaatgcaaat gaagatttgg
     7741 tatttttggg aaaaatacaa ggaaatttag agcttttgaa aatgcaaaaa ggtgatttta
     7801 aagtaaagat tataaagaag taaatttaag cttatgcaat tgtagaagtg gaagggaaat
     7861 ggattttcct agcagggatg ctaggtaaaa tataatatta aagaaagatt ggaaattact
     7921 taaatttaat gagggtgtct aaaaactacg aattatttta agaaaacttg attttaaaaa
     7981 atgataataa aaattatata aaatacaaaa agtaattaaa gattttgata taatctttaa
     8041 ttataggtaa attttatatt tgagaaaaga tggtttggaa aataatatac tgatacagat
     8101 tttggatatt gatcgcaata ttaataaaaa tattgttagg aataaagaag acagaggttt
     8161 tttatctcaa aatattttaa atgagctaag aaatttatta gaacatatag ccttatgtat
     8221 ttataatact gatacaaatc agcaattaga tagtatttat gaaaacttgc aatcaagttt
     8281 aaaatacatt ggagataaaa gaaaatataa agatataaaa aattttcata atttacttca
     8341 aatttcggta tctcattata cacctaatga agaagttgct gaaagattaa tgttgaaata
     8401 tttattctat ttatttcaaa caaggaattt ttgtaaagaa tttttagata ttcaaatatt
     8461 aaataattta caagaatttc caataaatct tgatacgttg agttttcaat attatgagcg
     8521 tgttgttgat aaaattaaac aaacaagtat gtttaacgat accaaaacag ataagtttta
     8581 tattcaaaaa gtcaaaccat ttataattaa tgaggagata tattacgaaa taacttttac
     8641 tatcgcaaaa gataatgtaa gtaaatttga taaattaatt gctttttcaa aatattacat
     8701 tcctagcaat tattctacaa aattaacttt gtattataca aatataaaac tactaaattt
     8761 gcaaatacct gttattttaa ttcttcagtg gaacatagat attcgtcctt gtgagtttac
     8821 taatttttgt ttaatattta attcaataag aatgtctttt acgagaagca caaaatacga
     8881 acattttatg caatttctaa caaaagaaga gcttaatttg cttgatattg taaaattaaa
     8941 aactgaagaa tatgatgaaa taaaaaatca atttagtgaa gataaattaa agcatctatt
     9001 taattgtttg gatatggcta gagagataat cttaaacaat aaatccgggt caaatattct
     9061 tagttatata ttatatgcaa tgaataatca aattatcaaa aaacaaattc ctaaaaagaa
     9121 aaatagctat caacctaatc cgaaactatc aaatttattt ttaaaaaatg aaagcattcc
     9181 atttgatgaa atgccgtttt gttcgaatcc ggcaggacat attccaaaat taaatgtttt
     9241 atttgaatgt attagtttaa ataataggga atacgaatta ttggctagga agattcagta
     9301 taattcagag gtaaatggtt ctttgtatac cagcttggaa gattttaaag aagataatat
     9361 tgaagtattg atagaaaaat ataatacagc attatataat ggacataaga aaaatagatc
     9421 aataaaaaaa cttcatgata aatttttatt tataaatgaa tatcaagata cactaataga
     9481 gataattcaa ttattaaata attttacaaa aagtggtctt gatcattata aagaaaatat
     9541 aaacgaatgg ttgaaagaat gtaatcaatt agattgcaaa gaaaaaaagg attatttaag
     9601 caatctattt tgcaattcaa aactagcatt gatatatgga gcagctggaa ctggaaaaac
     9661 aacattaata gaacatatat ctagtttttt tcatgataag aataaattat atttagccaa
     9721 tacaaatacg gctgttaaca atttaagaca aagacttgat attcaaaatt catctttttc
     9781 tactgttgct tcatatatag caaataaaaa taatatttcg aaaaaatttg atattgtatt
     9841 tattgatgag tgtagcacta ttagcaataa agatattttt agtgttttag atgatataaa
     9901 gttaaagtgt gaaattttaa tttgtgtagg cgatatatat caaattgaat ctatcaggtt
     9961 tggaaattgg tttttatttg ctcaaaaatt tttttcagat attcaattgg agttaaagca
    10021 tatttataga acaaaaagtg agaaattgca attattatgg gaaagagtta gaacacttga
    10081 tgaaagcatg cttgaggcta ttgaaaaaaa taatagttct gaaaatattc aaaattttaa
    10141 tttttcacga agtgtaaatg atgaaattat tttatgtttg aattatggtg gtatatatgg
    10201 agtaaataat ataaataaat tcttacaaga aaataatcct cataaatcat tttattttaa
    10261 tggattatcc tataaggtcg atgatccaat tttgtttaac gaaaattcat caaggtttgg
    10321 cgaagaattt cataataatc ttaaaggaac tataactaat attgaagagg atgaaaaaac
    10381 tataaatttt actattaaga ttaacaagat aatacaaagt ataaataaca attttacaat
    10441 aataactaaa aatgataaag atactgaaat taaatttagt gttacaagat taaattcaga
    10501 tgaagaagat gataatagta atatcgttcc ttttcaagta gcatacgcta tttctataca
    10561 taaagcacaa ggtttagaat atgataaagt ttctattatt gtagctgatg aaattgaaga
    10621 acaaattaca cataatattt tttatacagc aattaccaga gctaaaaaag aattgaaaat
    10681 atattggtct gcagaaactg aaaataaaat attgaaatct ttaaaaatca aagatataaa
    10741 taaagatttt catttattta aa
//
LOCUS       DARAII010000056        10630 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.056, whole genome shotgun sequence.
ACCESSION   DARAII010000056 DARAII010000000
VERSION     DARAII010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10630
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.056"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            220..675
                     /gene="accB"
                     /locus_tag="SB143_001149"
     CDS             220..675
                     /gene="accB"
                     /locus_tag="SB143_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEF9749689.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     LACPPVPAPQPINVNVVNEAQPSSAKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSSV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIVEILVADGQPVEFGMPLFTVEKL"
     gene            677..2008
                     /locus_tag="SB143_001150"
     CDS             677..2008
                     /locus_tag="SB143_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEF9749690.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIISAAEIAEADAIFPGYGFLSENQTFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVEHEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQIIGDS
                     FGNVIHIGERDCSMQRRHQKLIEESPAILLDEKTRARLHETAVKAAKAISYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQENVKLKGHS
                     IECRITAEDPKTFLPSPGKIIKYVPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAISKMKVALDELIIGGIKTTKDFHLAMMDNPDFISNNYDTNYLARH"
     gene            complement(2036..2851)
                     /locus_tag="SB143_001151"
     CDS             complement(2036..2851)
                     /locus_tag="SB143_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749691.1"
                     /translation="MKKILLSFVFFISLTHANTINAIAVVVDKEPITTYDIEQTMKTL
                     NIPKNQALGILINEKMELSQIKQFGIYTSELELDNAIGKMLAQNKISLEDFKRDLQAK
                     GQNYEQFRSNFKKDFEKRKLYEKIASTAKTDFSDEGAKKFFEQNKNKFTLFTEINVNI
                     YRSNNAQDLENIKATTKTALKAEKATLTPNNSDPRLLGLLSSIPIGSFSPVLNSQKGY
                     EIYQVKDKNGGQTPEYYQIKNEILNAYVSEQRQNYIQDYFDKLRSKINIEYLR"
     gene            2916..4307
                     /locus_tag="SB143_001152"
     CDS             2916..4307
                     /locus_tag="SB143_001152"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEF9749692.1"
                     /translation="MTGKLTTRFAPSPTGYLHIGGLRTALYSYLYARKNKGNFLLRIE
                     DTDLKRNSKEATQAIIEAFKWCGLDYDGEVTYQSERFDLYKKYIQKLLDEGKAYYCYM
                     SKEELDELRAKQEAAKERPRYDGRYRDFTGTPPSNIEPVVRIKAPQKGEICFIDGVKG
                     EVKFKVEDILDDFIIARSDGSPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFEIPKFYHVAMIHGEDGKKLSKRHGATDVMEYKAMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKRLFDPNHINKSASCYNFKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYTKAGFLLDLLRERAKTLLEIISGAKSIVESPQNYDENAINKFINENNLLLLQNYAN
                     ELNEEKSAKDFEEFTNEFLQKNEVKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVNEC
                     KKRIKKFLDFKGK"
     gene            4307..5542
                     /locus_tag="SB143_001153"
     CDS             4307..5542
                     /locus_tag="SB143_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEF9749693.1"
                     /translation="MNLKEEALRYHLGGKIDIKPSKPMNSSHDLSLAYSPGVAEPCIE
                     IASNNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFADVNAY
                     DLEIEAHSIEEIVAFCKAIAPTFGGINLEDISAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFEEIKVVVSGAGAAGIASARMYRNLGVKNIILVDSKGVVN
                     KKRTDLNQYKLEFVSDTQADTLKEAMKDADVFLGLSAPKILDDEMILSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRATKITENMK
                     VAAAKALADLAKLPVSDAVKNAYKISHLEFGKDYVIPKPFDERVKAVVSTAVAAAAVK
                     DGVALLKEFDEKTYFESLK"
     gene            5539..6165
                     /gene="upp"
                     /locus_tag="SB143_001154"
     CDS             5539..6165
                     /gene="upp"
                     /locus_tag="SB143_001154"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEF9749694.1"
                     /translation="MKNIHHICHPLIEHKLGFLRDKETKPFHFRMLIDEISTFLLFEA
                     TKDLCLKETQIQTPVANAKVKRLDEKIMICPILRAALGMLDSIFRLIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AALQGLQKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            6171..6842
                     /locus_tag="SB143_001155"
     CDS             6171..6842
                     /locus_tag="SB143_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEF9749695.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGFKASMEHKKGVPSKLNKD
                     LFYRRIDAAIVSSIESARKKYKNLDLGICANKRVLSVLVEKNTPNAKDPSSATSNALA
                     KVLKQEGRVIIGDKALKLYLQDPSRYTDLCTKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDIRYYLDEIIYHKISTKEKAALKRFIKACK
                     ALNLT"
     gene            complement(6843..7493)
                     /locus_tag="SB143_001156"
     CDS             complement(6843..7493)
                     /locus_tag="SB143_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEF9749696.1"
                     /translation="MKKLSYGVIGLGKFGSVVADELLAGGHTVIIADKDEEALKSIQN
                     SPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVNNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKKLVKDFLTKDADYEVFDLSANTIRAIKITIDDK
                     LAGNSLKHIAQNMRVISYKKLNTDWEILPDLETTTVYGGDVVILLGTVKELREFEH"
     gene            complement(7506..8849)
                     /locus_tag="SB143_001157"
     CDS             complement(7506..8849)
                     /locus_tag="SB143_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter"
                     /protein_id="HEF9749697.1"
                     /translation="MKQFGLDRRTFKILLAGYIVIALLGAILLHSSWAHTSPISFIDA
                     FFTSTSAVSMTGLIVKNTAVDFTLAGQIIILILVQIGGLGYMSIGLFVYLIIRKKVGF
                     NGRNLLKESLFYPSMEGLFKFFKKVLLFIFTIELIGTILLTMRFALEMNFGKALWFGF
                     FHSISAFNNSGFTIFENGLLAYKHDVAINLIFTSLIIIGGLGYFVLVELYFFQRKRLQ
                     NLSLHTKVVIMATLFLIISSTLIIFLLEYANPKSIGSFSLFDKILSSYFIAINYRTAG
                     FNTLDMSGLHDASLFFGSLFMVIGGAPGGTAGGMKITTVVVLLFYAYWSIRNGRVRIF
                     NHEIPQEIISRAFIIAVGSAVYIVIAVIFLSLLESEFNFIHLLFETSSAFATVGISVG
                     DGGDLSLCALFSNPSKIIIIIMMLSGRIGVFAFLLSVFQQDKAIHIKFPKGKIYL"
     gene            8990..9065
                     /locus_tag="SB143_001158"
     tRNA            8990..9065
                     /locus_tag="SB143_001158"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9023..9025,aa:Phe,seq:gaa)
     gene            complement(9282..9357)
                     /locus_tag="SB143_001159"
     tRNA            complement(9282..9357)
                     /locus_tag="SB143_001159"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9322..9324),aa:Met,seq:cat)
     gene            complement(9389..9463)
                     /locus_tag="SB143_001160"
     tRNA            complement(9389..9463)
                     /locus_tag="SB143_001160"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9429..9431),aa:Gln,seq:ttg)
     gene            9570..10589
                     /locus_tag="SB143_001161"
     CDS             9570..10589
                     /locus_tag="SB143_001161"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEF9749698.1"
                     /translation="MKFVSIEQAIKDLQEGKMLVMVDAEDRENEGDLIFPAQFSTKEK
                     VNFMIKEARGVVCVALAEELARKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RDMTIKIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCHLAGLKQACV
                     ICEIVKDDGDMARRSDLEEFCTKHNLNMIAVSDIIEYRLKNESLIKLQEKSDAILAGF
                     KAQKFIFTDHNNAQHIAFAFKEIQKCENVKFHISGSDFELLTSDKFSKLLDQIRFLSE
                     NGGVIVFMQGEKSSVTQFKNYGIGAQILRYFGIEEIKLMSQSCDKDYIGLKGFGLNLK
                     ICNFN"
BASE COUNT         3720 a         1513 c         1958 g         3439 t
ORIGIN      
        1 ggctctatca tctgatgttc gagcgccatt tttcttatcc aattgtctgc ttttaaaccc
       61 atttaactca cctttatttt taaacataat ttttttggat tatagcttat tttttatatt
      121 ttatgaaact tttaagcgtg aaattttatt ttttaaagtt aaatttcaag ttttttaata
      181 taatactaga ttaagttctt aaaatcagga gatgaagata tgacaaaaga agagattaaa
      241 gaattagtaa atttatttgc cgaagctaat atcagtaaaa taaaaatcaa agaacaagat
      301 ggatttgaaa tcgaacttga aagagatatg tgttgtgatg ttccagctcc tttagcttgt
      361 ccacctgttc cagctccaca acctataaat gttaatgtag tcaatgaagc acagccttca
      421 agcgcaaaat caaataaacc aagcataaac agccctatgg taggtacttt ctatcaagct
      481 ccaagcccag gcgcagctcc ttttgtgaaa gtgggtagtt cagttaaaaa aggcgatact
      541 atcgctatca tcgaagcgat gaaaatcatg aatgagatcg aagctgaatt tgattgtaga
      601 atagtagaaa ttttagttgc agacggtcag cctgtagaat ttggtatgcc tttatttacg
      661 gtggagaaat tataaaatgg aaattaaaag cattttaatt gctaaccgtg gagaaatagc
      721 acttcgagct ttaagaacaa tcaaagaaat gggaaaaaaa gcaatttgcg tttattctga
      781 agcagataaa gatgctttgt atttaaaata tgcagatgca agcatttgta taggaaaagc
      841 aagaagttct gaaagttatc ttaatatacc tgctattatt tcagcagctg aaattgcaga
      901 agcggatgcg atttttccag gttatggatt tttaagtgaa aatcaaactt ttgttgaaat
      961 ttgtgctaaa cacaatatca aatttatagg gccttcggtt gaagctatga atttgatgag
     1021 tgataaatca aaagctaagc aagttatgca aagagcagga gttcctgtta taccaggaag
     1081 tgatggagct ttagcgggtg ctgaagcggc taaaaaactt gctaaagaga tcggttatcc
     1141 tgtgatttta aaagcagcag ctggaggcgg aggtcgtgga atgcgtgtag tagagcatga
     1201 aaaagacctt gaaaaagcat attggtcagc tgaaagtgaa gcgatgacag cttttggcga
     1261 tgggactatg tatatggaaa aatacataca aaatccacgc catatagaag ttcaaatcat
     1321 cggagatagt tttggaaatg tgatccatat tggtgagagg gattgctcta tgcaaagacg
     1381 ccatcaaaaa cttatagaag aatctccagc aattttactc gatgaaaaaa ctcgcgcaag
     1441 acttcacgaa acagcagtaa aagctgctaa agctataagc tatgagggtg cagggacttt
     1501 tgaattttta gtagataaaa atttggattt ttattttata gagatgaata cgcgtttgca
     1561 agttgagcat tgtgtgagcg aaatggtgag cgggattgat atcattgaac aaatgattaa
     1621 agtagctgaa ggttatgctt taccttctca agaaaatgtg aagttaaaag gacattctat
     1681 agaatgtaga atcactgctg aagatcctaa gactttcttg ccaagtccag gtaagattat
     1741 caagtatgtt ccacctgcag ggcgcaatgt tagaatggaa agtcattgtt atcaagacta
     1801 cagcgtgccg ccgtattatg attctatgat aggaaaactt gtggtttggg cagaagatcg
     1861 caacaaagcc atttcaaaaa tgaaagtagc tttggatgag ctgattatag gtgggattaa
     1921 aactactaaa gattttcatc ttgcaatgat ggataatcct gattttatta gtaataatta
     1981 cgataccaac tatcttgcta gacattaatc aagatggatt ttttccatct tgattttatc
     2041 ttaaatactc tatattgatt tttgagcgta atttatcgaa ataatcttgt atataatttt
     2101 gtctttgctc gcttacataa gcattgagta tttcattttt aatttgataa tattctggag
     2161 tttgtcctcc gtttttatcc tttacttgat aaatttcata acctttttgc gaatttaaaa
     2221 ccggagaaaa gcttcctatg ggtatagatg ataaaagtcc taaaagtctt ggatctgaat
     2281 tattaggagt gagggtggct ttttctgctt taagtgcagt ttttgtggta gcttttatat
     2341 tttctaaatc ttgtgcattg ttagaacgat agatatttac attaatttcg gtaaagagtg
     2401 taaatttatt tttattttgt tcgaaaaatt ttttagctcc ctcatcgcta aaatcggttt
     2461 tagctgtgct ggcaattttt tcataaagtt ttcttttttc aaaatctttt ttaaaattgc
     2521 tacgaaattg ttcgtaattt tgccccttag cttgtaaatc tcttttaaag tcttcaagtg
     2581 aaattttatt ttgtgctagc attttaccaa tggcattatc aagctcaagc tcactcgtat
     2641 aaattccaaa ttgttttatt tgtgaaagct ccattttttc attaatcaaa atccccaagg
     2701 cttgattttt aggtatattt agggttttca tggtttgttc tatatcatag gttgtgatag
     2761 gctctttatc taccactaca gcaatagcat ttatagtatt tgcatgagtt aagcttataa
     2821 aaaatacaaa acttagtaaa atttttttca tttcaaacct ttatttaagt gtaaatatcg
     2881 cattatatca attaaaattt aagaaaaggc aaaaaatgac aggaaaactt acgactcgtt
     2941 tcgctccaag ccctacagga tatttgcata taggtggttt aagaaccgct ctttatagtt
     3001 atttgtatgc aagaaaaaat aagggcaatt ttttacttcg tatagaagat acggatttaa
     3061 aaagaaattc caaagaagct acgcaagcta tcatagaagc ctttaaatgg tgtggtttgg
     3121 attatgatgg tgaggtaact taccagtctg aacgctttga tctttataaa aaatacatac
     3181 aaaaactttt ggatgagggc aaggcttatt attgttatat gagtaaagaa gagcttgacg
     3241 aactccgtgc taaacaagaa gcggccaaag aacgcccaag atatgatggc agatacaggg
     3301 attttacagg aactccacca tcaaatatag aacccgtggt gcgtataaaa gctcctcaaa
     3361 agggtgaaat ttgctttata gatggtgtta aaggggaagt gaaatttaaa gtagaagata
     3421 ttttagatga ttttattata gcaagaagtg atggaagtcc tacttataat tttacagttg
     3481 taattgatga tgctttaatg ggagtaagcg atgtgattag aggggatgat catctttcaa
     3541 atactcctaa acaaatcgtg ctttatgagg ctttaggatt tgaaattcct aaattttacc
     3601 atgtggctat gatacatgga gaagatggta aaaagctttc aaaacgacac ggagcaaccg
     3661 atgtgatgga atacaaggct atgggaattt tacctcaagc tttgctaaat tttttagtgc
     3721 gtttaggatg gagccatggc gatgatgagg ttttttcttt agaagatctt aaaaggcttt
     3781 ttgatcctaa tcatatcaac aaaagtgctt cttgttataa ttttaaaaaa cttgaatggc
     3841 tcaatgctca ttatatcaag actttgcctt ttgaagaaat caatcgtcag ttaaaagatc
     3901 ttggttttga tctaagcgtt tatacaaaag caggattttt actcgattta ttaagagagc
     3961 gcgcaaaaac tttacttgaa attattagcg gagctaaaag tatcgttgaa tcgccacaaa
     4021 attatgatga aaatgctata aataaattta taaacgaaaa caatctttta ttgcttcaaa
     4081 actatgcaaa tgagttaaat gaagagaaaa gtgcaaaaga ttttgaagaa tttactaacg
     4141 aattcttaca aaaaaatgag gtaaaattaa aagatttggc tcaacctata cgcatagctc
     4201 taacaggaag tgcggttagt cctagcattt ttgaagtttt agagttttta ggggtcaatg
     4261 aatgtaaaaa aagaataaaa aaatttttag attttaaagg aaaataatga atttaaaaga
     4321 agaggcttta agatatcact taggaggcaa gatagatata aagccatcaa aacctatgaa
     4381 ttcaagtcat gatttatctt tggcttatag tccaggtgtt gcagaacctt gcattgaaat
     4441 tgcttctaat aatgagcttg cttatactta tacaaacaaa gcgaatttag tagctatcgt
     4501 tagtgatggt tctgcggttt taggtcttgg aaatatcggc gcgcaagctt ctaaaccggt
     4561 tatggaaggt aaggcttgct tgtttaaaaa atttgctgat gtaaatgcgt atgatttaga
     4621 aatcgaagca cacagcattg aagaaattgt tgctttttgt aaagccatag cacctacttt
     4681 tggcggaatc aatttagaag atatttcagc acctaaatgt tttgaaatcg aagcggcttt
     4741 gcaggattta ggaattcctg taatgcacga tgatcagcat ggaaccgcta ttatctcaac
     4801 cgcagggctt atgaatgcta tggagataag tggtaaaaaa tttgaagaga ttaaagttgt
     4861 tgtaagtgga gcaggagctg cgggtattgc tagtgctaga atgtatagaa atttaggtgt
     4921 taaaaatatc attcttgtag atagtaaggg tgtggtcaat aaaaaaagaa cagacttaaa
     4981 tcaatacaag cttgaatttg taagcgatac gcaagcagat actttaaaag aggctatgaa
     5041 agatgcggat gtattcttgg ggcttagtgc accaaagata ctagatgatg agatgatttt
     5101 gtctatggca aaagatcctg ttatctttgc cttggcaaat cctattccag aggtgatgcc
     5161 tgaagatgtg gcaaggctta gaaaagatgc tattgtagga acgggaagaa gtgattatcc
     5221 taatcaaatc aataatgttt taggctttcc ttttattttt cgtggggctt tagatgtgcg
     5281 tgcgacaaaa attactgaaa atatgaaagt agctgcagca aaagctttag cagatttggc
     5341 aaaattacct gtaagtgatg cggttaaaaa tgcttataag ataagccatt tagaatttgg
     5401 aaaggattat gttatcccaa aaccttttga tgagagggtt aaggctgttg taagcactgc
     5461 ggtagctgct gcggctgtaa aagatggggt agctttgctt aaggaatttg atgagaaaac
     5521 atattttgag agtttaaaat gaaaaatatt catcacatat gccatccttt gatagagcat
     5581 aaattagggt ttttgcgcga taaagaaact aaacctttcc attttaggat gctcattgat
     5641 gagatttcta ctttcttgct ttttgaagcg actaaagatt tatgtttaaa agaaacacaa
     5701 attcaaaccc ctgttgctaa tgctaaggta aaaagattag atgaaaagat tatgatatgc
     5761 cctattttaa gggcagcttt gggtatgctt gatagtattt ttagacttat tcctgatgca
     5821 agtgttggat ttttggggtt tgtgagaaat gaagagactt taaaggcgga tttttatttt
     5881 caaaaacttc ctaaagatgc aaaaaaacgc accgctattg ttatagatcc tatgtttgct
     5941 acaggtggga ctgctataga ggcttgtaat tttttaaaaa gccaaggagt taaaaaaata
     6001 aaatttatat ccatacttgc tgctttacaa ggtttgcaaa aatttagcca aatgcatgat
     6061 gatgtagaag tttttgtggc ttgtattgat gaaggtttaa atgaaaaagg ttatattatc
     6121 ccagggcttg gagatgcagg agatagagtg tttaacactc tttaaaagag atgatttttg
     6181 gaaaaattga ttatattaat cttttgcctt tgcatatata tcttaagaaa tatcctttac
     6241 ctaatggttt taaagcaagt atggagcata aaaaaggagt tccaagtaag ctaaataaag
     6301 atttatttta tagaagaatt gatgcagcta ttgtttcaag tatagaaagc gctagaaaaa
     6361 aatataaaaa tttagatttg ggtatttgtg ccaataaaag agttttaagt gttttagtag
     6421 aaaaaaatac acccaatgct aaagatccaa gctcggcaac ttctaatgct ttagctaagg
     6481 ttttaaaaca agaggggagg gtgattatag gtgataaggc tttaaaactt tatttacaag
     6541 atccttctag gtatactgat ttgtgcacaa aatggcatga aaaaacaggc ctgccttttg
     6601 tttttgctag gttttcatgt gtgcaaaaaa aagctttata taaacaaatc ttaaaaaaat
     6661 ttccaaaaac aaagattaaa attccttatt atatactcca aaattatgct aaaacaaggg
     6721 atttagatat aaaagatatt agatattatt tagatgaaat catatatcat aaaatttcca
     6781 ccaaagaaaa agcagcctta aagcgtttta taaaggcttg caaggcttta aatcttactt
     6841 aattaatgct caaattctct aagctcttta accgttccaa gtaagattac aacatcacca
     6901 ccataaacag tagttgtttc taaatcaggc aatatttccc agtctgtatt aagtttttta
     6961 tagctaataa ctctcatatt ttgtgcaatg tgctttaatg aatttcctgc taatttgtca
     7021 tctatagtga ttttaatagc acggatagta ttagccgata gatcaaaaac ctcataatct
     7081 gcatctttgg ttaaaaaatc ttttacaagc tttttagcac tttctttttc aggatagatt
     7141 acttttgtag ctccaagttt ggataaaatt tgcccatgaa tgttagaagt ggcttttgcg
     7201 ataatattat ttactcctat atctttaaga gccattagag taagtatgga tttttcaaca
     7261 ttttcaccta tgcttacaat cacgacttct acatcatgaa aacccgcttc tttaagtgct
     7321 gaaatattgg tagaatccaa gatataggca tagcttggtg aattttgtat actttttaaa
     7381 gcttcttcat ctttatcggc tatgattaca gtatgtcctc cagcaagaag ctcatctgcg
     7441 actacggatc caaattttcc aagtcctata accccgtaac taagcttttt cattatattt
     7501 aacctttata aatagatttt tcctttagga aatttgatat gtatcgcttt atcttgctga
     7561 aatacagaaa gtaaaaacgc aaaaacacca atccttccgc ttaacatcat aataataata
     7621 ataattttgc ttggattgct aaataaagca caaagcgaaa gatctccccc atctcctacc
     7681 gaaattccca ctgttgcaaa tgctgatgag gtttcaaaaa gcagatggat aaaattaaat
     7741 tctgattcta gcaaagaaag gaaaataacc gctataacta tataaacagc cgaacccact
     7801 gctataataa atgctcttga aatgatctct tgtggaattt cgtggttgaa aattcttacc
     7861 cttccattgc gaatgctcca gtaagcataa aacaaaagca ccacaacagt tgtgattttc
     7921 attccccctg ctgttccacc cggtgctcct ccaatcacca taaataaaga gccaaaaaat
     7981 aagcttgcat catgcaagcc actcatatcg agtgtattaa atcctgctgt gcggtaattg
     8041 atcgcaataa aataagaact caaaatttta tcaaaaagag aaaagctacc tatggatttt
     8101 gggttagcat actctaaaag aaagataata agtgttgaag aaatgataag aaaaagggtt
     8161 gccataataa cgactttggt atgtaggctt aaattttgca gtctttttct ttgaaaaaaa
     8221 tacaattcaa ctaagacaaa atatccaagt ccaccaatga taataagaga agtaaagatg
     8281 agattaatag ctacatcgtg cttataggca agaagtccat tttcaaaaat agtaaaacct
     8341 gaattattaa aagcactgat tgaatgaaaa aatccaaacc ataaggcttt accaaaattc
     8401 atctcaagcg caaaacgcat ggtaagaagt atagtgccta taagttctat tgtaaaaata
     8461 aatagtaaaa cttttttaaa gaatttaaaa agtccttcca tggaaggata aaataaagat
     8521 tctttaagta agtttctacc attaaaacct acttttttgc gtataatcaa gtaaacaaaa
     8581 agccctatac tcatataacc taagccgcca atttgaacta aaattaaaat aataatttgt
     8641 cctgccaagg taaaatcaac tgctgtattt ttaacaataa gtccagtcat actcacagct
     8701 gaagtactag taaaaaaagc atcgataaaa ctaataggac ttgtatgagc ccaacttgaa
     8761 tgcaaaagaa tagcgccaag taaagcaatg acaatatatc ctgctagcaa aattttaaaa
     8821 gttcgtctgt ctaagccaaa ttgtttcaaa aaaatcctca ttggttttta attttaaacc
     8881 gactattcta tcggattaaa actttaaggc aaataaaatt ttatttttat atttaaactt
     8941 aaattaaaga aaaaaaagta taattacact ttatttttaa agatgactcg gttggatagc
     9001 tcagtcggta gagcagcaga ctgaaaatct gcgtgtcggc agttcgattc tgcctctaac
     9061 caccatcatt ttatttttta ttaaaaatga ctttaatttc ttcctaagtt cttcatcaaa
     9121 ttttatttaa aaatttatat catattatat cttatatgtt agttataaat ttatttttta
     9181 tattatttta taatgcgatt tttttagtta aaaaataaaa ttctagaaaa ttaaaataaa
     9241 tcatttttgt atatttaaga tttaaagtta tggataagtt ttggttgcga aggggagatt
     9301 tgaactcccg accttcgggt tatgagcccg acgagctaac cactgctcta cttcgcgaca
     9361 atcaaatttg tgtttgaagt ttagttcatg gatggggtaa agggattcga acccctggat
     9421 gacaggacca aaacctgttg ccttaccgct tggcgatacc ccaatattta atttttaaaa
     9481 agtaaaaacg agattataat caattttaat ttatttgtca agcaaatgaa gttataattt
     9541 taaaaaaaat aatattttaa ggattaaaaa tgaagtttgt aagcattgaa caagcaatta
     9601 aggatttaca agaaggaaaa atgcttgtaa tggtagatgc agaagataga gaaaatgaag
     9661 gagatttgat ttttccagct caatttagca ctaaagaaaa agtaaatttt atgataaaag
     9721 aagctagagg ggttgtgtgt gtagcactcg cagaagaact tgcaagaaaa tttgaacttc
     9781 ctttgatggt gcccaaaaat acttcaaatc atgaaacagc ctttacaatc acagtggatg
     9841 caaaagatgc aactacaggt gtaagtgctt atgaaagaga tatgacgata aaaatttttg
     9901 cagacgataa tgcaaaagcg agtgattttg tacgccctgg acatataaat cctttgatag
     9961 ccaaaaaagg cggtgtttta gagcgcacag gccatacaga aggaacggtt gatctttgtc
    10021 atttagcagg gcttaaacaa gcttgcgtga tttgtgagat tgttaaagat gatggagata
    10081 tggcaagaag aagtgatttg gaagaatttt gtactaagca taatctaaac atgatagctg
    10141 tttctgatat catagaatat cgcttaaaaa atgaaagtct tattaaatta caagaaaaaa
    10201 gtgatgctat tttagcaggt tttaaagcac aaaaattcat ttttacagat cataataatg
    10261 ctcagcatat agcatttgca tttaaagaaa ttcaaaaatg tgaaaatgtt aaatttcata
    10321 ttagcggaag tgattttgag cttttaacct ctgataaatt ttctaaatta ttagatcaaa
    10381 ttcgtttttt gagtgaaaat ggaggagtga tagtttttat gcagggtgaa aaatcaagtg
    10441 taactcaatt taaaaattat ggtataggtg cgcaaatttt aagatatttt ggcatagaag
    10501 agattaagct tatgtcgcaa agttgtgata aggattatat aggcttaaaa ggctttggtt
    10561 taaatcttaa aatttgtaat tttaactaaa ataaaaggat atacaatgaa tttaaaagag
    10621 cagatattaa
//
LOCUS       DARAII010000057        10605 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.057, whole genome shotgun sequence.
ACCESSION   DARAII010000057 DARAII010000000
VERSION     DARAII010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10605
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.057"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..578)
                     /locus_tag="SB143_001162"
     CDS             complement(<1..578)
                     /locus_tag="SB143_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEF9749699.1"
                     /translation="MIVFGSTGSIGLNALKLATLKNIKISALACGENISLLNEQIEQF
                     KPQFVAIKNSKDKHLVKHDKVFVGQEGLEEILSLCEDDLLLNAIVGFAGLKSTLKAKE
                     LGKKIALANKESLVVAGKFLKGAKFLPVDSEHSALKFLLEGKKDIAKLYVTASGGAFY
                     KHKIKDLSHVSVKDALKHPNWNMGSKITIDSAT"
     gene            complement(575..1300)
                     /locus_tag="SB143_001163"
     CDS             complement(575..1300)
                     /locus_tag="SB143_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEF9749700.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPVLTLWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLVCASVIGTILGIFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIATFVMVALL"
     gene            complement(1309..1647)
                     /locus_tag="SB143_001164"
     CDS             complement(1309..1647)
                     /locus_tag="SB143_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749701.1"
                     /translation="MPVSPIGNMNFVNQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            complement(1649..2956)
                     /locus_tag="SB143_001165"
     CDS             complement(1649..2956)
                     /locus_tag="SB143_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEF9749702.1"
                     /translation="MKYTELMQLQNFFSQFKKIDFIKRVNDNILELSFNRERFIFDLT
                     RGMSAIYTAKLMSKNYNAPFDFMLKKYFNNAFIKEVKLLQDNRILCFSVKVDKAYKSY
                     ESKIYFEFTGKNTNVIITDEKDLIIEALRHIDKSYRVVKPNVILEALKPYKMDEKFEE
                     IKNFKDYFTQKFEILHANKIKQIQTLKLAQIDKKIENLKELYLALDKEEVLLDQALNL
                     RKQADILFANLSILKEYEREFELDDFEGKKVKFKLDLSPKESANLFYKNAKKLEQKAR
                     NLNLQRENLKEKLDFAYGLKEMLSKAKNEFELEILLPKKSTKKNQENKQDNGIANFYF
                     NEFKICVGKNEKGNENLLKSAKKDDLWLHVRDIPSSHVLIISNKQKISEEVIEFSARL
                     CVNFSGLKKGSYWVDYTLKNFVKVQQKAFVKYTNFKSINITKD"
     gene            3019..3594
                     /locus_tag="SB143_001166"
     CDS             3019..3594
                     /locus_tag="SB143_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEF9749703.1"
                     /translation="MKLENLNCVILCGGKSSRMGEDKSKLIFKNQTLTQFQVEKFSKI
                     FKNVYVSAKEDKFGAKFKLIKDCPEFEIYSPMLALYSILSNFKDEFVFILSVDSPNLS
                     DKELLKFLPSLKQDYQIIIAKTPSHKHPLCGFYHSSVAHFCKKLLEKNEQKIALLFSK
                     AKTHFVDFEDESPFLNLNFYQEYEQFKSEYE"
     gene            3591..4586
                     /locus_tag="SB143_001167"
     CDS             3591..4586
                     /locus_tag="SB143_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEF9749704.1"
                     /translation="MKKILFLIFFYSLVFCDDFEQALEFEKKGQYKKAMQIYKKLALQ
                     NSPKQDLKENNASLLSSIKHETQNTQKTPSTKEDFSRIALANYLGENSSFNPLGISSY
                     KMNYFLPFAYSFGSLGGENRKTEMKFQLSIKKRLFEDLLGLGEKYYVGYTQTSWWQNY
                     KHSSPFRETNYQPEFFVDIPLHFEDYKFLNNLRVGILHESNGKGDENLESRSWNRIYA
                     SSVFLYQRFLFVPRIWYRIPENSEDDDNPEITHYMGNFDINIGYLGNDYFINLMLRNN
                     LDFHDNKGAVQVDIGYDIFDNGIYWYLQYFNGYGESLIDYNKRLQRLSTGFLISY"
     gene            4719..5687
                     /locus_tag="SB143_001168"
     CDS             4719..5687
                     /locus_tag="SB143_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749705.1"
                     /translation="MLFKHLFSLNILLILLVVFGIISLFIGVIRINLDDIFSLSTTQL
                     EIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNL
                     GVSYNTILFLGLIIVSIITSVVIVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALC
                     GALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKTYA"
     gene            5680..6618
                     /locus_tag="SB143_001169"
     CDS             5680..6618
                     /locus_tag="SB143_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEF9749706.1"
                     /translation="MRKKILILAFLTLIMALVFVFAGLKDFDEYALKNRFLQIAAIVI
                     VAICIAISTVIFQTLCNNKILTPAIIGLDSLYMLLQSALVFSLGSANLSVYRNDINFL
                     ITLACMVVFSLGLYKILFSSDKSIYLIMLLGLIFGTLFSTLSSFFEILIDPDEFMIIQ
                     GRMFASFDNVAFDVLALAYIVTLLSFIWIFRYMKFLDPLSLGKDLSINLGINYQKISK
                     HLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLLACILISILALLGG
                     VFFVSRIFDYNTTISVIINFLGGIYFIYLVLKGNKL"
     gene            6615..7370
                     /locus_tag="SB143_001170"
     CDS             6615..7370
                     /locus_tag="SB143_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEF9749707.1"
                     /translation="MIRLQNITKCYDQKAIISDLSIDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPDSGRIYIDGMNLALYKEQDLAQKISILKQQNHINLRLKVEELVAFGRFP
                     HSQGRINLNDKMKIDEALEYMGLNTLRNEFLDSLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFSKSIAVVLHDINFASIYSDEIIALKNGKLLKQG
                     LKDEIIQEDVLRQIYDMDIPVSQIDGKKICIYF"
     gene            7385..8374
                     /locus_tag="SB143_001171"
     CDS             7385..8374
                     /locus_tag="SB143_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siderophore ABC transporter substrate-binding
                     protein"
                     /protein_id="HEF9749708.1"
                     /translation="MKKSLVFAFFAFFLSLILTACDSKSNENNASTVIKTSTTVKVIP
                     ISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFHALRLNDKVAGVPAKNLPK
                     YLQQFKDKPSIGGVQQVDFEAINALKPDLIIISGRQSKFYEKLKEIAPTMFVGLDNAN
                     FLSSFENNVLSVAKLYGLEKEASEKIADIKNEIEQAKSIVDEDKKALIVLTNSNKISA
                     FGPQSRFGIIHDVLGINAVDENVKVGTHGKSINSEFILEKNPDYLFVVDRNIIVGNKE
                     RAQGILDNALVTKTNAATNNKIIYLDPEYWYLASGNGLESLKTMILEVTNAIK"
     gene            8540..9172
                     /locus_tag="SB143_001172"
     CDS             8540..9172
                     /locus_tag="SB143_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749709.1"
                     /translation="MINKNKLFRQIHIYVSLFFLPCAVLFALTGIAYILGADQDTGLK
                     VETYKLVKNIEPGKEKDALIQYLQENNLKVPSDAEATQGKGKGANMGGMHHNANAAPA
                     NVKAGKGKNNELTIGGAHYSANITPVAQNEYVITLKTRSLLGDMIMLHKDKGAWYFSV
                     LSIGFGIALFLLYISGLIITLFASKKDRQKQLATLGAGVVITILLAYLSL"
     gene            9240..9330
                     /locus_tag="SB143_001173"
     tRNA            9240..9330
                     /locus_tag="SB143_001173"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9274..9276,aa:Ser,seq:gct)
     gene            complement(9844..>10605)
                     /locus_tag="SB143_001174"
     CDS             complement(9844..>10605)
                     /locus_tag="SB143_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEF9749710.1"
                     /translation="GAQIIKIQHPESELYSGGVHAANGVSCADCHMPYVREGAKKISQ
                     HNITSPLRDINSACKTCHKQSEDYLRAQVRDIQNSVAHDQRTAEYAIVSLIMDTKKLR
                     DELGNMEKFQTDGKADASKISEELKEVLELHRKSQMRADFVNAENSTGFHNPREASRM
                     LLQAVDMAKTGQIKLIEIANANGINDFKTSNLGFEDMQKFNPGELYYKVDVNGHKAGE
                     RYYGDEIEVNGNPPKELLEHDKNLAPYNYQVIDKK"
BASE COUNT         3594 a         1683 c         1490 g         3838 t
ORIGIN      
        1 gttgcactat ctatcgtgat ctttgaaccc atattccaat ttggatgctt tagagcatct
       61 ttgacactca catgacttaa atctttaatt ttgtgtttat aaaaagctcc gccacttgcg
      121 gtaacataaa gctttgctat gtctttttta ccctcaagta aaaatttcaa agccgaatgc
      181 tcgctatcta cgggtaaaaa tttcgcacct tttagaaatt ttccagcaac gaccaagctt
      241 tctttgtttg ccaaggcgat ttttttgcca agttcctttg cttttaaagt gctttttaat
      301 cctgcaaaac ccacaatggc attgagcaac aaatcatctt cacacaagct taaaatttct
      361 tctaaaccct cttgtcctac aaaaacttta tcgtgtttta ctaaatgctt atctttagag
      421 tttttaatcg ctacaaattg gggtttaaat tgttctattt gctcatttaa aagacttata
      481 ttttccccgc aagcaagagc agaaatcttg atatttttta aagtggcaag ttttagggca
      541 ttaagcccta tacttcctgt acttccaaaa actatcataa aagagcaacc atcacaaaag
      601 tagcaatgat caccgcatcg atcctatcga gcacaccccc atgaccaggg ataagatctc
      661 cactatcttt tacacctgct tctcttttaa aataactctc aagcaaatct ccaatgactg
      721 caaaaatcgc tacaaaaaac gaacaaagta aagaaagcca aaaactataa acaaaaattc
      781 ccaaaatagt tccaataaca ctcgcacaaa caagaccacc tatcacacct tctagggttt
      841 tgttaggact tgttggagaa aaaggagttt tacccataag ttttccgata aaatacgccc
      901 cactatcaca agctgcaacg ataatgataa gccaaaaaag tgcaaacata ccctgatcta
      961 aatacacctg ccaaagcgtt aatacaggca aactaggata aatataaata agagctggtt
     1021 ttaaggaagc ctttttataa accaaatatc caacgactaa taacaaagct aaaatcccaa
     1081 aaagcaaagc tttatgcgat aaacttccca aaataaaagc tatagccaaa gggataatag
     1141 aaatattttc taaagcaaaa agtttttttg cttcactaaa agataaatac aataaaaccg
     1201 caaaaacgat aaaattgata aaaaattgat caatcaacgc gataataata atagccccta
     1261 tcatcacaag agctgaaata attctagttg tattaaacat atttttcctt atatactaat
     1321 atctaagcga tgaatgcttt gtgcgtcttt aaaatttgga tctttagact catcttcttc
     1381 atttttctca tcatcgctgg ttttagcttc ttgattgtgt tttttctttt tttcttcttg
     1441 ttcggctttt tctttgatct cttctttgat ttcatgagtc tcattgactt tctcaagctt
     1501 gtttaaagtt ttttcttttt cattaaattc agccatattt agcgtagctg caaaaccttc
     1561 ttttgcaagc tcattgcttg cttgtgtagc tggataagcc atattctgat taacaaaatt
     1621 catatttcct attgggctaa ctggcatttt aatcctttgt gatattaata cttttaaaat
     1681 ttgtatattt tacaaatgcc ttttgctgaa ccttaacaaa attctttaaa gtataatcga
     1741 cccaatatga acctttcttt aatcctgaaa aattcacaca aagccttgcg ctaaattcta
     1801 tcacttcttc gctgattttt tgcttgtttg aaataattaa aacatgagaa cttggaatat
     1861 ctcttacatg cagccacaaa tcatcttttt ttgcgctctt tagcaaattt tcattgcctt
     1921 tttcattttt gcctacgcaa attttaaact cattaaaata aaaattagct atgccattat
     1981 cttgcttgtt ttcttgattt ttcttggtgc tttttttagg caataaaatt tcaagctcaa
     2041 attcattttt agccttgctt agcatttctt ttaagccata agcaaagtct aatttttctt
     2101 ttaaattttc tctttgtaaa tttaaatttc tagctttttg ttctaatttt ttagcatttt
     2161 tataaaataa attagcgctt tcttttggac ttaaatcgag tttaaatttt actttttttc
     2221 cttcaaaatc atcaagttca aattctcttt cgtattcttt taaaatgctt aaattagcaa
     2281 ataaaatatc cgcttgcttt cttaaattta aagcttgatc taataaaact tcttctttgt
     2341 ctaaagcaag ataaagctct tttaaatttt ctattttttt atcgatttga gcgagtttga
     2401 gtgtttgaat ttgcttgatt ttatttgcat gtaaaatttc aaatttttga gtaaaataat
     2461 ctttaaaatt ttttatttct tcaaattttt catccatttt ataaggcttt aaagcctcta
     2521 aaatcacatt aggttttaca acacgataac ttttatcaat atgccttaaa gcctctataa
     2581 tcaaatcttt ttcatctgta ataattacat tggtattttt acctgtaaat tcaaaataaa
     2641 tcttgctttc atagctctta taagctttat ctaccttaac actaaaacac aaaatgcgat
     2701 tatcttgaag caatttcacc tctttgataa aagcattatt aaagtatttt tttagcataa
     2761 aatcaaaagg agcgttatag tttttactca ttaattttgc agtataaata gcactcattc
     2821 cacgagttaa atcaaaaata aatctttctc tattaaagct tagctctaaa atattatcat
     2881 taacacgctt gataaaatcg atttttttaa attgggaaaa aaaattttgt aattgcataa
     2941 gttctgtgta tttcataaaa gagattataa gatatttttg atgaatttat gatagaattg
     3001 aaataaaaaa ggaaattttt gaaacttgaa aatttaaatt gcgtgatttt atgcggtggt
     3061 aaatcaagtc gtatgggaga ggataaaagc aaattgattt ttaaaaatca aaccttaacc
     3121 caatttcaag tagaaaaatt ttcaaaaata tttaaaaatg tttatgtgag tgctaaagag
     3181 gacaaatttg gagcaaaatt taaactcata aaagattgcc ctgaatttga gatttattcc
     3241 cccatgcttg cactttattc tatactttca aattttaaag atgaatttgt ttttatttta
     3301 agcgtggata gtcctaatct aagtgataaa gaacttttaa aattcttgcc ttctttaaag
     3361 caagactatc aaatcatcat tgccaaaact ccttcacata aacatccttt atgcggattt
     3421 tatcacagct ctgtagctca cttttgtaaa aaattgctag aaaaaaatga acaaaaaatc
     3481 gctttattat tttctaaagc aaagacccac tttgtagatt ttgaggatga aagtcctttt
     3541 ttaaatctta atttttatca agaatatgag caatttaaaa gcgagtacga gtgaaaaaaa
     3601 ttcttttttt gatatttttt tatagtttgg tattttgcga tgattttgaa caagctttag
     3661 aatttgagaa aaaaggacaa tataaaaaag ctatgcaaat ttataaaaaa ctagccttgc
     3721 aaaattctcc taaacaagat ttaaaagaaa ataatgcttc tttactttca agcataaagc
     3781 acgaaacaca aaatacccaa aaaacaccta gcacaaaaga ggatttttcg cgcattgctt
     3841 tggcaaatta tttaggagaa aattcaagtt ttaatcccct tggaatcagc tcatataaga
     3901 tgaattattt cttacctttt gcttatagtt ttggctcatt aggcggggaa aatagaaaaa
     3961 ctgaaatgaa atttcaactc agtattaaaa aaagattatt tgaagatttg ttaggattag
     4021 gtgaaaaata ttatgtaggc tacactcaaa catcttggtg gcaaaactat aaacattcct
     4081 caccctttag agaaacaaat tatcaacctg aattttttgt agatattcct ttgcattttg
     4141 aagattataa atttcttaat aatctaagag taggaatttt gcatgaaagc aatggcaaag
     4201 gagatgagaa tttagaatca cgctcttgga atagaattta tgcttcaagc gtgtttttat
     4261 atcagcgttt tttatttgtt cctagaattt ggtatagaat tcctgaaaac agcgaagatg
     4321 atgataatcc tgaaatcaca cattatatgg gaaattttga tatcaatata gggtatttag
     4381 gaaatgatta ttttataaat ctcatgctaa gaaataatct tgattttcat gacaataaag
     4441 gcgctgtgca agtggatata ggatatgata tttttgataa tggaatttat tggtatttac
     4501 aatacttcaa tggctatgga gaaagcctta tagattacaa caaacgctta caaagacttt
     4561 ctacgggatt tttgatttca tattaaattt aattttcttt tttgtagatt aaattaaaac
     4621 aatcaattga gattttataa atttttatag ttttttaaat tattttattt taaaatacga
     4681 ttttattttt gataattatt attactataa ggaaaaaatt gctttttaaa cacttgttta
     4741 gtttaaatat tcttttaatt ttacttgttg tttttggaat aataagctta tttatagggg
     4801 ttattcgtat caatttagac gatatttttt cactcagcac tacccagctc gaaatcattt
     4861 tacttacaag aattccaaga cttattgcaa ttttacttac aggtatgagt cttagtatat
     4921 gcggactcat catgcaacaa ctcacgcaaa ataaatttgt ttctccaacc actgcaggga
     4981 ctatggattg tgctaaattt ggcattttga tttctttaat attttttaca ggagcttctt
     5041 tttttactca agctctcatc gcatctattt ttgctctttt aggttctttt atatttatcc
     5101 aaattctaag aaaaattaaa cttaaagatg tgatttttgt gcctttgata ggattaatgt
     5161 ttggtgggat tataaatgct ataaccactt tttttgctta tgctttaaat tatatacaaa
     5221 atatccaagg ctggctacag ggcagtatgg caaatgttat gcagggaaat tatgaattgc
     5281 tttatatttc tttaccgctt tttatacttg cttattttct agcccataaa atcactatag
     5341 caggtatggg agaagatctt gctttaaatc ttggagtttc ttataataca atcttatttt
     5401 taggcttaat aatagtttct attatcacta gcgtagtgat tgtaagcatt ggagttatac
     5461 cttttttagg tcttatcatc cctaatcttg ttgccattta tcgcggggat aatcttaaga
     5521 aaaatcttat ctatatagca ttatgcgggg ctttgttttt acttatttgc gatattatct
     5581 caagacttgt gatttttcct tttgaaatgc ctttgagtat aaccacaggt gttttgggct
     5641 ctttaatttt tatttttctt ttactcaaaa ggaaaactta tgcgtaaaaa aatcttaatc
     5701 ttagcttttt taacccttat aatggcactt gtttttgtat ttgcaggttt aaaagatttt
     5761 gatgaatacg cattaaaaaa tcgctttttg caaatcgcag ctattgttat agtggctatt
     5821 tgtatagcta tatcaactgt gatttttcaa actctttgca ataacaaaat tttaacccct
     5881 gccatcatag gcttggattc tttatatatg cttcttcaaa gcgcccttgt cttttcttta
     5941 ggttctgcaa atttgagtgt atatagaaat gatattaatt ttttaatcac tctagcttgt
     6001 atggttgtat tttctttagg actttataaa attcttttta gcagtgataa aagtatttat
     6061 cttatcatgc ttttaggttt gatttttgga acacttttta gcacactaag ctcttttttt
     6121 gaaattctta tcgatcctga tgaatttatg attattcaag gaagaatgtt tgcaagtttt
     6181 gataatgtag cttttgatgt tttagccctt gcttatatcg taactttgct tagttttatt
     6241 tggatttttc gctatatgaa atttttagac cctttaagtt tgggcaagga tttatccata
     6301 aatttaggga taaactatca aaaaatttca aaacatctta tgataataat tgctatttta
     6361 acttctatta gcacagcact tgtgggtcct atcaccttcc taggactttt agtagtaaat
     6421 atcacttacg aactttttaa aactgcaaag catagcattt tactacttgc ttgcatactc
     6481 attagcattt tagctttact tgggggagta ttttttgtct ctagaatttt tgattacaat
     6541 acaaccataa gcgttattat caatttttta ggtggaatat attttatcta tcttgtatta
     6601 aaaggcaata aactatgata agattacaaa atatcaccaa atgctacgat caaaaggcta
     6661 tcatttcaga tcttagtatc gattttcata aaggaaaaat tacttccatt ataggggcaa
     6721 atggagcagg aaaatctact cttttagctc ttgcaagtcg tttaatcaaa cctgatagtg
     6781 ggcgaatcta tatcgatggc atgaatttag cactatacaa agaacaagat cttgcgcaaa
     6841 aaatttccat tcttaaacag caaaatcata ttaatttaag attaaaagtt gaagaattgg
     6901 tcgcatttgg acgctttcca cactctcaag gaagaattaa tttaaacgat aaaatgaaaa
     6961 tcgatgaagc acttgagtat atgggactta acactctaag aaatgaattt ttagacagct
     7021 taagtggggg acaaaaacaa agagctttta tagcaatgat tatcgctcaa gatactgaat
     7081 ttatcatgtt tgatgaacct cttaataatc ttgatatgaa acatagcgta caaatcatgc
     7141 aacttatgaa aaatttagta aaagacttta gtaaaagcat agccgttgta cttcatgata
     7201 tcaattttgc ttcgatttat tctgatgaaa tcatagccct aaaaaatgga aaactcttaa
     7261 aacagggttt aaaagatgaa atcatccaag aagatgtttt aagacaaatt tatgatatgg
     7321 atatccctgt aagtcagatt gatgggaaaa aaatttgtat ttatttctaa ataaaggaga
     7381 atatatgaaa aaatctttag tttttgcatt ttttgcattc tttttaagtc taattttaac
     7441 agcttgcgat tctaaatcca atgaaaacaa cgcaagtact gtaataaaaa ctagcactac
     7501 ggtaaaggtt atacctatta gtatgagtga tgagggtgat agctttttag taaaagatag
     7561 cctaggtgaa aacaaaattc caaaaaatcc ttctaaagtt gtgattttag atcttggaat
     7621 tttagatact ttccatgccc taagacttaa cgataaagtt gcaggagttc cagctaaaaa
     7681 cttgccaaaa tacttacagc aatttaaaga caagcctagt ataggtggag ttcaacaagt
     7741 tgattttgaa gctattaatg ctttaaaacc tgatcttatt atcatttccg gacgccaaag
     7801 caaattttat gaaaaattaa aagaaattgc tccaactatg tttgtaggac ttgataatgc
     7861 aaatttctta agctcttttg aaaacaatgt tttaagtgtt gcaaaacttt atggcttaga
     7921 aaaagaagct tctgaaaaaa ttgcagatat taaaaatgag atagaacaag caaaaagcat
     7981 agtagatgaa gataaaaaag ctcttattgt tctaaccaat tctaacaaaa tttccgcttt
     8041 tggacctcaa tctcgctttg gaatcattca tgatgtttta ggaatcaatg ctgtggatga
     8101 aaatgtaaaa gtaggcacac atggaaaaag cattaattct gaatttatac tagaaaaaaa
     8161 tcctgattat ctatttgtag ttgatagaaa tatcattgtg ggcaataaag aacgcgcaca
     8221 aggcatactt gataatgcac ttgtaactaa aaccaacgct gctacaaata ataaaatcat
     8281 ttatcttgat cctgaatact ggtatctagc aagtggcaat ggcttagaat cattaaaaac
     8341 catgatttta gaagtaacaa acgctattaa ataaacccta tgtaagagaa gttgttctct
     8401 tacattctct tatccaaatc caactatcaa gtacaaatct taaacaaatt taagtttata
     8461 tccactataa aaaattcact ttcgcttcac attcttttgt caaaatacca tacaaattga
     8521 taatcaaaaa ggagagaaaa tgattaacaa aaacaaatta tttagacaaa ttcacattta
     8581 tgtgagttta tttttcttac cctgtgctgt actttttgca cttacaggga ttgcttatat
     8641 ccttggagcc gatcaagata cgggtttaaa ggtagaaact tataaacttg taaaaaatat
     8701 agaacctggt aaagaaaaag atgcactcat ccaatactta caagaaaaca atttaaaagt
     8761 tccatctgac gctgaagcta ctcaaggcaa aggcaagggg gcgaatatgg gcggaatgca
     8821 ccataatgcc aatgcagctc ctgctaatgt caaagctggc aaaggtaaaa acaatgaatt
     8881 aactataggt ggagcacatt atagcgccaa tataactcct gttgctcaaa atgagtatgt
     8941 aataactctt aaaactagat ctttgttagg cgatatgatc atgcttcata aagataaagg
     9001 ggcgtggtat ttttctgtgc ttagcatagg ctttggtatt gctttatttt tactctatat
     9061 ctcaggactt atcattactt tatttgctag caaaaaagat agacaaaaac agcttgcaac
     9121 acttggagct ggggttgtta tcactatact tttagcttat cttagtcttt aattttttta
     9181 tctagctttt ttaagctagg tattatctaa ttttttatat aatcacactt taatttattg
     9241 gacagatggg tgagcggctg aaaccacacc cctgctaagg gtgcagatct taatcgggtc
     9301 tcgagggttc aaatccctct ctgtccgcca ctgactttca aaaaaaacta tcaactatca
     9361 ttttaattac cttttatata ttatttgcat ttcaaaaata aactttacaa agctttttct
     9421 taatcaataa aataaaattc aattttatcc ttatttttca accaaataac gcaagcttta
     9481 aaaataaaaa tttctatact ttatccatct aaaataaatg agcttttttc gtataatcca
     9541 ataataaaat cggttatttt tcatttaaaa acgatctatt taaagcaaag aagcattgat
     9601 ttaaattcta attttaaaaa actataaaaa ttatttttgt cgtttttctt aagcaagtgc
     9661 tatatttttt ataaatccat cttatcgtgt gtactaaaca actcaaaatt aatcatagac
     9721 ttttatctat aaaaatttac tgcttaaaag catagaaaat ataaaaacat taaacagata
     9781 aaaattataa gattttattt tgaaagatat aaaaaaagcc ctaaaatata gggcttttaa
     9841 gaattatttt ttatcaatta cttgataatt atacggagca aggtttttat cgtgttctaa
     9901 aagttctttt ggaggattac catttacttc tatttcatca ccataataac gctctcctgc
     9961 tttatgtcca ttaacatcta ctttataata aagctctcca ggattaaatt tttgcatatc
    10021 ttcaaaacct aaatttgaag ttttaaaatc attaatgcca ttggcattag caatttctat
    10081 aagtttaatt tgtcctgttt tagccatatc tacagcttgt aaaagcattc ttgaagcctc
    10141 acgaggattg tggaaacctg ttgaattttc agcattaaca aaatcagctc tcatttgaga
    10201 tttgcggtga agctctaaaa cttctttaag ttcttcacta atcttgcttg catcagcttt
    10261 accatcagtt tggaattttt ccatattgcc taactcatca cgcaattttt tagtatccat
    10321 gattaggcta acaatagcat attcagctgt tctttgatca tgcgctacac tattttgtat
    10381 atcacgaact tgagctctta aataatcctc gctttgttta tggcaagttt tacaagcaga
    10441 attaatatct cttaatggag aagtgatatt gtgttgagaa attttcttag caccttctct
    10501 aacataaggc atatgacaat ccgcacaact tactccatta gcagcatgca caccaccact
    10561 ataaagctca ctttcagggt gttgaatttt aatgatttgc gcacc
//
LOCUS       DARAII010000058        10427 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.058, whole genome shotgun sequence.
ACCESSION   DARAII010000058 DARAII010000000
VERSION     DARAII010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10427
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.058"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..977
                     /locus_tag="SB143_001175"
     CDS             <1..977
                     /locus_tag="SB143_001175"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEF9749711.1"
                     /translation="KLEGYEKLIPEYQTPKVSKKEIDEKKEELLKRFATPEAIKTKRA
                     LKEGDFAKFDFEGFVDGKAFDGGKAENYVLEIGSKQFIPGFEEGMVGMKSGEEKDVKV
                     TFPKEYGAAHLAGKDAVFKVKLHEIQELKLPELDEGMLKNLLQNEEKPTVELLDEKLK
                     EQIKNEKLFKLVNDELKAKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEIE
                     ELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRYG
                     MNPKEHLENYKKQGALPAVKMALIEEKLFSDIFMPKTDKASKKEKEDK"
     gene            977..1561
                     /gene="clpP"
                     /locus_tag="SB143_001176"
     CDS             977..1561
                     /gene="clpP"
                     /locus_tag="SB143_001176"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEF9749712.1"
                     /translation="MYIPYVIEKTSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPQKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGTEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKAILNDILAKNTKQK
                     VAKIVKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            1589..2116
                     /locus_tag="SB143_001177"
     CDS             1589..2116
                     /locus_tag="SB143_001177"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEF9749713.1"
                     /translation="MVRKIITYPNSRLFLNSEPVKQFDQELHTLLDDMYDTMIASQGV
                     GLAAIQVDIPLRALIVNILDENEEQKKEDLLEIINPQIIPLGEEKITCTEGCLSVPDF
                     FEEVERYNHILLKYQDRFGNFKELEAQGFLAVAIQHENDHLNGHLFIEKISFLKRQKF
                     DKEFKKKLKNQKKSK"
     gene            2113..3618
                     /locus_tag="SB143_001178"
     CDS             2113..3618
                     /locus_tag="SB143_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEF9749714.1"
                     /translation="MKKLKCVSFDENLDIIDVESTFTRGLPNLSIVGLANIAIKESIE
                     RIKATLLTCNFSFPAKKITINLSPSGIPKKGSHFDLVIATLILLQNEDFDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSTKVKSAKVVVPKNIALKASMIPNLEIYGLEHLNEVIEF
                     FKEKNYEKFKFTQSHPLFANPLIIENEIFIKNHHFELDFKDIKGQEKAKRACLIAALG
                     MHNILFEGSPGSGKSMCAKRLVEIMPPQSLNEVLMQNAYMSLNSKDCEFTQKRALRHP
                     HHTSTRASIFGGGAKNAKIGEIALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKTTYETKFSFVAAQNPCPCGNLFSKNLSCVCSENEIKRYKNHISAPIMDRIDLY
                     VAMDEISKDDKSSINSKEMSERILKAFIFGKKRGQKEFNGKLNDTELQKFCILEKDAK
                     DTLDLAISRYNLSQRALNKILKVSRSIADFEEKELLSKNHILEALSFRMRS"
     gene            3620..4318
                     /locus_tag="SB143_001179"
     CDS             3620..4318
                     /locus_tag="SB143_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEF9749715.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEIIIKRIYGDWTQ
                     KNIQAWKEQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKDIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDQDENKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFNPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYENYY"
     gene            4302..5672
                     /locus_tag="SB143_001180"
     CDS             4302..5672
                     /locus_tag="SB143_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HEF9749716.1"
                     /translation="MKTITDDIKTLEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RKQYKIKKVKILFLLGGGNNAADGLVALRNLKHAKAYKLGFKENEIFKKQEQILKNFG
                     FKFAKKEPKFKKFHIVVDCILGTGTNREVDEKTKEILEKVNQSKALKIACDIPTNLGF
                     TPCFKADITQCMGALKEILLEDFAKEFVGKIKLANLGINAKKFSLDSKAFLLEEKDLK
                     TIERNTSSNKGNFGHIYIIASASAGTLAGLGALNFGSGLVSLVAKKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDILKDEILQNIPLVLDANCFLSEAVLWYLSRKDVVITPHPKE
                     FIRLYKMCFDKDLSIEDLQRNRFFYAKKFAQNYDCVLVLKGANPIIIQKEKIFVVNLG
                     NEALAKGGSGDVLSGMIATLLGVKFSALEAAKNACLAHALVAKKYKFNKNSFDAIKLI
                     KGLKCL"
     gene            5663..6238
                     /gene="purN"
                     /locus_tag="SB143_001181"
     CDS             5663..6238
                     /gene="purN"
                     /locus_tag="SB143_001181"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEF9749717.1"
                     /translation="MLVKLAVLFSGNGSNLQNILEKLHKKTIGKNTYEVVLCLCNKKD
                     AYGIQRAKNFDLESVIIEHKDYKNREEFDEILVKKIKESGADLTILAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVNEELDGGKIIAQKAFEKQ
                     NLTFEEFEAKIHGLEHEILPLSVVEIFENCH"
     gene            complement(6376..6613)
                     /locus_tag="SB143_001182"
                     /pseudo
     CDS             complement(6376..6613)
                     /locus_tag="SB143_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778540.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(6779..7495)
                     /locus_tag="SB143_001183"
     CDS             complement(6779..7495)
                     /locus_tag="SB143_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEF9749718.1"
                     /translation="MRAARTCGANNNDFSILDYLFDEYGLSLKDPKYNFRFADMKYIK
                     EANDKYIVVRYMEDNPSIYKEALIYRYILKVRNPNPQIIQYLANHGAKFEVYREDTGW
                     SPIHFWASNNDYKFLELAIKGGANVDMEEYEFESIYKYQDTPLFEAVKESENYRTVQL
                     LIELGANVNFVPYLTTPLDQAEGARNRKLLKAAGAMTSDQLEKKFNIFYKDYEDRNEY
                     CDLLNEAIRKDKEKENLQKN"
     gene            7636..8376
                     /locus_tag="SB143_001184"
     CDS             7636..8376
                     /locus_tag="SB143_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEF9749719.1"
                     /translation="MFEWIFSAEMWIALATLIGLEIVLGIDNIIFIAILVGRLPKEKR
                     QRARIFGLSLAMITRLLLLLSLFWIMKLTTPLFSVFSQEISGRDIILILGGLFLIAKS
                     TLEIHHDIDNAGEKSDEEVLKEGAKRGFFSILIQIAVLDIVFSLDSVITAVGMVNNIE
                     IMMIAVVVAVFVMMLASKSISNFVDDNPTIKILALAFLILVGVTLVAEGLDFHISKTY
                     VYFAMAFSLGVESINIYIKKKRLAQEKS"
     gene            8426..8635
                     /locus_tag="SB143_001185"
     CDS             8426..8635
                     /locus_tag="SB143_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEF9749720.1"
                     /translation="MPKDANGTELNAGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KENEIEAKVDKFGVIVLKTEFLKKI"
     gene            8644..9828
                     /locus_tag="SB143_001186"
     CDS             8644..9828
                     /locus_tag="SB143_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEF9749721.1"
                     /translation="MRILLILRGNYYAGQEEFIKENRLKDYTLDLNSLRLLSGSVSKI
                     VSKYKNLNLKNDEELYKILLQFLEMRMQKGEFCIINAYNETLKVYKELAKQYRYDIYI
                     IDFKSSLEECLRKNEQKAKERGYIVSQSLLKKTHHLLERIPKKYTILNPNDWKKCLYQ
                     MPNLSKYRKIHHIGDIQGCFSILKEYLQELKDDECYIFLGDYIDRGIENGKVLKFLLK
                     ICERENVYLLEGNHERHLIKWANGELSSSKEFNENTLKDFRKEKLTPRDARKFYPYLK
                     ECLYYKFHEKQVFCSHGGVNLLPSKAYQISFMPSYDFIYGVGNYEESQKVASQFCEFT
                     KDNVYQIFGHRNRTKLPVQIEKRVFLCEGKVDDGGHLRIVTLDKKGFECIELKNKVYR
                     KK"
     gene            complement(9840..>10427)
                     /locus_tag="SB143_001187"
     CDS             complement(9840..>10427)
                     /locus_tag="SB143_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEF9749722.1"
                     /translation="NMQIICDHKHTRFPYIDGSKDTILGMIHIRDIVQNELSDKSENL
                     DTFVKPLILVPENISISKVLVMMNKERSHTALVIDEYGGTAGILTMEDIMEEIIGEIK
                     SENEEDSYKKLAENIYEFQGRCDIETVEEMLLISYDEDLEQVTIGGYVFNLLGRLPVA
                     GDRIEDELCYYEVKKMDGNSIERVKVVKKTNKDEE"
BASE COUNT         3852 a         1460 c         1737 g         3378 t
ORIGIN      
        1 tcaaacttga gggttatgaa aaactcatcc ctgaatatca aactccaaaa gtaagtaaaa
       61 aagaaattga tgagaaaaaa gaagaattat taaaacgctt tgctactcct gaagctatta
      121 aaaccaaaag agctttaaaa gaaggtgatt ttgcaaaatt tgattttgag ggttttgtag
      181 atgggaaagc ttttgatgga ggtaaagctg aaaattatgt tttagaaata ggttctaaac
      241 aattcatacc aggttttgaa gaaggtatgg taggaatgaa aagcggagaa gaaaaagatg
      301 taaaagtaac ttttcctaaa gaatacggcg cagcacattt agcaggaaaa gatgcggtat
      361 ttaaagtaaa attgcacgaa attcaagaat taaaattgcc tgagctcgat gaaggaatgt
      421 taaaaaatct tttacaaaat gaagaaaaac caacagttga acttttggat gaaaaactta
      481 aagagcaaat caaaaacgaa aaacttttca agcttgtaaa tgatgagcta aaagctaaat
      541 ttgctgatgc tttgattgaa aaatataatt ttgatttacc taaaggcata gtagaacaag
      601 aaactgatat gcagatgcgt gcggctttta atacttttag cgaaaaagaa attgaagaac
      661 ttaaagcaag taaagaaaaa tatcaagaaa aacgcgattc tttcaaagaa gaagcacaaa
      721 aaagcgtaaa acttactttt atcattgatg agcttgcaaa attgcgtaag attgaagtaa
      781 atgatcaaga attgattcaa gcgatttatt ttgaagctta tcgttatgga atgaatccaa
      841 aagaacattt agaaaattat aaaaaacaag gggctttacc tgcagtaaaa atggctttga
      901 tcgaagaaaa acttttcagc gatattttta tgccaaaaac cgataaagca agtaaaaaag
      961 agaaagaaga taaataatgt acatacctta tgtaatcgaa aaaacaagcc gcggtgaaag
     1021 aagttatgat atttattcgc gtcttttaaa agatagaatt attatgctaa gtggcgaaat
     1081 tcatgatgaa cttgccgctt ctattgtagc acagcttctt tttttagaag ctgaagatcc
     1141 acaaaaagat atatatcttt atatcaattc tccaggtggt gtgatcacaa gcggttttag
     1201 tatctatgat actatgaatt atatcaagcc tgatgtttgt acgatttgca taggtcaagc
     1261 tgcatctatg ggtgcatttt tattgagttg tggaacagaa ggcaagcgtt ttgctttgcc
     1321 taattcacgc atcatgatac atcagccttt aggtggtgca agaggacaag ctacggatat
     1381 agaaattcaa gccaaagaaa ttttaagatt aaaagctata cttaatgata tcttggcaaa
     1441 aaatactaag caaaaagtcg ctaaaatagt aaaagacaca gaaagagatt ttttcatgtc
     1501 agcacaagaa gctaaagagt atggtttgat cgataaggtt ttagaaaaaa gttttaaatg
     1561 agtaaaatca tttaaataaa ggttgtttat ggttagaaaa attatcactt atcctaattc
     1621 tagacttttt ttaaattctg aacctgtaaa gcaatttgat caagaacttc ataccctgct
     1681 tgatgatatg tatgatacta tgattgctag tcaaggagtg ggtttggctg ctatacaagt
     1741 agatatccca cttcgtgcat tgatcgtaaa tattttagat gaaaatgaag agcagaaaaa
     1801 agaagactta ctagaaatta taaatccgca aatcattcct ttaggtgaag aaaaaatcac
     1861 ctgcactgag ggttgtttaa gcgtgcctga cttctttgaa gaagtggagc gttataatca
     1921 tatcttgctt aaatatcaag atcgctttgg aaattttaaa gaattagaag ctcaaggatt
     1981 tttagctgtg gccatccagc atgaaaatga tcatcttaat ggtcatttat ttatagaaaa
     2041 gatttctttt ttaaaaagac aaaaatttga taaagaattt aaaaagaaac ttaaaaatca
     2101 aaaaaaatct aaatgaaaaa attaaaatgt gtaagctttg atgagaattt agatatcatc
     2161 gatgtagagt ctacatttac aagaggctta cctaatttaa gcatagtcgg acttgcaaat
     2221 attgcaatta aagaaagtat cgagcgtatc aaagccacac ttttaacttg caatttttca
     2281 tttcctgcta aaaaaatcac catcaatctt agcccttcag gaattccaaa aaaaggttct
     2341 cattttgatt tagttatcgc tacgcttata ttgttgcaaa atgaagactt tgatgatttt
     2401 tttgtggtag gcgagcttgg tcttgatgga agtatcaaaa gcaccaatga gcttttttct
     2461 ttacttttat ttttatccac aaaggtaaaa agtgcaaaag ttgtagtccc aaaaaatata
     2521 gctctaaaag cttctatgat acccaatcta gaaatttatg gacttgagca tttaaatgaa
     2581 gtgattgaat tttttaaaga aaaaaactat gagaaattca aattcaccca aagccatcct
     2641 ttatttgcaa atcctttgat tatagaaaat gaaattttta ttaaaaatca tcattttgaa
     2701 cttgatttta aagatatcaa aggacaagaa aaagctaaaa gagcttgttt gatagcagca
     2761 ctaggtatgc acaatatact ttttgaagga agtccaggaa gtggcaaaag tatgtgtgca
     2821 aaacgccttg ttgaaatcat gcctccacaa agtttaaatg aggttttaat gcaaaatgct
     2881 tatatgtctt taaattctaa agattgcgaa tttacgcaaa aaagagcctt aagacaccct
     2941 catcatacct ctacaagagc tagtattttt ggtggtggag caaaaaatgc gaagataggt
     3001 gaaatcgctc tagctaatgg tggagtttta ttttttgatg aatttcctca ttttaacaaa
     3061 cagattatcg aaagtctaag agaacctcta gaagatcata aaattcatat ttcaagagtc
     3121 aattcaaaaa ccacttatga aaccaaattc agttttgttg ccgctcaaaa tccttgtcct
     3181 tgtggaaatt tattttctaa aaatctgtct tgcgtttgta gtgaaaatga gattaaaaga
     3241 tataaaaatc acatttcagc ccctattatg gatagaattg atctttatgt agctatggat
     3301 gagatcagca aagatgataa gtcaagtata aattcaaaag aaatgagtga aagaatttta
     3361 aaggctttta tctttggcaa aaaacgcggc caaaaagaat ttaatggcaa attaaacgat
     3421 acagaattgc aaaaattttg tattttagaa aaagatgcca aggatacttt ggatttagcc
     3481 atttcgcgtt ataatctttc acaaagagct ttaaataaaa ttttaaaagt ttcaagatct
     3541 attgcagatt ttgaagaaaa agaacttctt agtaaaaatc atattttaga agctttgagt
     3601 tttaggatga ggagttaaat tggaaaataa aagcatagct atttttatcg atgcggaaaa
     3661 tatacccgca aaatacgcaa aaagtatttt tgatatcgct tcggattatg gtgaaataat
     3721 tatcaagcgt atttatggag attggactca aaaaaatatt caagcttgga aagagcaaat
     3781 tgctgagtat tctttaatcg ctatgcagca gtttaatttc gcagcaaata aaaattcaag
     3841 tgatatgtat ttaatcactg aaattatgag tatattttat gagaaagata ttgatatttt
     3901 tgtcattgtt tctagcgata gtgactatac ctcgctcatt caaaagctaa gagaaaacaa
     3961 aaagcaagtt ataggaatgg gtcttgaaaa gtctataaaa tcttatgtaa acgcttttag
     4021 tgagtttttt taccttgatc aagatgaaaa caaaaaagaa gatattttaa gcaaggatta
     4081 tttaagagct ttgatcaata tcacagaaca actcatcgat gaaaaaggac gcgccgaata
     4141 cgcgcaaatt cgcaccaata tgaaccgcaa atattctgat tttaatccgc aaaattatgg
     4201 ctttaaaaat tttcgtgctt taattcagaa atttttaccc aaaatgaaaa aatttgaaga
     4261 agagcgagaa aaaaatattt attttctggt gaaaaaagat tatgaaaact attactgatg
     4321 atattaaaac tttagaacaa aatgctataa ataaaggctt agatgagctt attttaatgg
     4381 aaaacgcagg attaaattta gctaagctta ttaaaaaaga agcaaaaaaa attcgcaaac
     4441 aatacaagat aaagaaagta aaaatacttt ttttattggg cggaggcaat aacgctgctg
     4501 atggcctagt agctttaaga aatttaaagc atgcaaaagc ttataaacta ggctttaaag
     4561 aaaatgaaat ttttaaaaaa caagagcaaa ttttaaaaaa ttttggtttt aaatttgcaa
     4621 aaaaagagcc taaatttaaa aaatttcata ttgttgttga ttgtatctta ggcacaggaa
     4681 caaaccgcga agtagatgaa aaaacaaaag aaattttaga aaaggtaaat caaagtaaag
     4741 ctttaaaaat agcttgtgac atacctacaa atttgggttt tactccttgt tttaaagctg
     4801 atatcacgca gtgtatggga gctttaaaag aaattttgct tgaggatttt gctaaagaat
     4861 ttgtaggcaa aatcaaactc gcaaacctag gtatcaatgc taaaaaattt agtcttgatt
     4921 ccaaagcttt tttacttgaa gaaaaagatt taaaaaccat agaaagaaat acaagctcca
     4981 ataaaggaaa tttcggtcat atctatataa tagctagtgc aagtgcagga accctagcag
     5041 gacttggagc tttaaatttt ggcagtgggc ttgtatcctt agtcgcaaaa aaaagttttt
     5101 cacctctttt aatgctaaaa gaaaagattg aaaacaatgc aagtgccatt gccttaggta
     5161 tgggacttga aaatttagat attttaaaag atgagatttt gcaaaatatt cctttggttt
     5221 tggatgcaaa ttgcttttta agtgaagctg tgctttggta tctaagtaga aaagatgtag
     5281 tcatcacccc acatccaaaa gaatttataa gactttataa aatgtgtttt gataaggatt
     5341 taagtataga agatttgcaa agaaatcgct ttttttatgc taaaaaattt gcacaaaatt
     5401 atgattgtgt tcttgtttta aagggtgcaa atcctatcat catacaaaaa gaaaaaatct
     5461 ttgttgtaaa tctgggaaat gaagctttag caaaaggcgg aagtggcgat gttttaagcg
     5521 gtatgatagc tacgctttta ggggtaaaat tcagcgcttt ggaagcggct aaaaatgctt
     5581 gtttagcaca cgctcttgtg gctaaaaaat ataaatttaa caaaaacagc tttgatgcaa
     5641 taaaacttat aaaaggatta aaatgcttgt aaaattagcg gtacttttta gtggaaatgg
     5701 aagtaattta caaaatatct tagaaaaact tcataaaaaa actataggta aaaacactta
     5761 tgaagtcgtg ctttgtcttt gcaataaaaa agatgcttat gggatacaaa gagctaaaaa
     5821 ctttgacctt gaaagcgtga tcattgaaca caaagattat aaaaacagag aagaatttga
     5881 cgaaattttg gtaaaaaaaa tcaaagaaag cggagcagat cttactatct tggctggatt
     5941 tatgcgaatt ttaagccctg tttttacaaa aaatatcaaa gcaattaatc ttcatccatc
     6001 tttactaccc ctttttaaag gagctcatgc tatcaaagaa agctatgaaa gcgatatgaa
     6061 agtagctgga gtgagtgtgc attgggtaaa tgaagaatta gatggaggga aaatcatcgc
     6121 tcaaaaggct tttgaaaaac aaaatttaac ctttgaagaa tttgaagcaa aaattcatgg
     6181 cctagagcat gaaattttac ccttaagtgt agtagaaatt tttgaaaatt gtcattaagt
     6241 taagatattt tatcgctaaa ttttagaaaa ttaaatttac ttgagtgttt tatcggtatt
     6301 tacttttaaa attttttaaa gcatataaaa aatctctaat atcgcttact tgatctgtta
     6361 cccattcatc tacactcatt ttttcatcat cttcatcatc ttcatatccc tcctcatctt
     6421 catcatatcc ataaaagtga ggatcatcat aaagctcaat ttcccaatca cttaactcac
     6481 attctacatc atcaatgaaa tttttaagag ttgcaccttc aaaatctttt ttatcgtatt
     6541 ctaaaacagt gattagatta ggcggtaagg taactttata ttgttcatca acttttaaat
     6601 taccattttc cactagattt ttatattcgt agcttaaaac attgcctata aaagctcttg
     6661 cttcatgttt tttaagccat ctatggcacc ttttaaataa ctatcatttt taagatagta
     6721 ttcaaatact tgttgcatat cttcatctaa taaattttta ttttccattg ttgctccttt
     6781 aatttttttg taggttttct ttttccttat cctttcttat agcttcattt aataaatcac
     6841 aatattcatt acgatcttca taatccttat aaaagatatt aaatttcttt tcaagttgat
     6901 cggaagtcat tgcacctgca gcttttaaaa gttttctatt tctagctcct tcggcttgat
     6961 ctaaaggtgt cgttaaatag ggaacaaaat taacattagc tccaagctct attagaagtt
     7021 gcacggttct gtaattttct gactctttca ctgcttcaaa taagggtgta tcctgatatt
     7081 tatagattga ttcaaactca tattcttcca tatccacatt agcccctcct ttgatggcaa
     7141 gctctagaaa tttataatca ttattactag cccaaaaatg tataggagac cagcctgtat
     7201 cttcgcgata cacttcaaat ttagctccat gatttgctag gtattggata atttgggggt
     7261 ttggatttct aacttttagg atatacctat agattaaagc ttctttgtaa atgctaggat
     7321 tatcttccat atatcttact acaatatatt tatcattagc ttctttgata tatttcatat
     7381 ctgcaaagcg aaaattatat ttaggatctt ttagacttaa gccatactca tcaaataaat
     7441 aatctaaaat agaaaaatca ttattatttg ctccacaagt gcgagctgct ctcataactc
     7501 atagccttaa tatcttctaa tgttttcatt gtttttcctt gtaaaaattt aattatatgt
     7561 tatatcaaaa tatttaatat ttgctttgaa gttataaaat tacactttaa aaaatttcaa
     7621 attttaagga agcttatgtt cgagtggatt tttagtgctg aaatgtggat cgctctagcg
     7681 actttgattg gcttagagat tgttttaggg atagataata tcatttttat cgctattttg
     7741 gtaggaagac tccctaagga aaaaagacaa agagcaagaa tttttggttt aagtttggcg
     7801 atgattacgc gtttgttatt gctcctttct ttattttgga ttatgaaact tacaactccg
     7861 ctttttagcg tattttcaca agaaatttca ggaagggata ttattttgat cttaggtgga
     7921 ttatttttga tagcaaaatc cacactagaa attcatcatg atatcgataa tgccggagaa
     7981 aaaagcgatg aagaggtttt aaaagaggga gctaaaagag gattttttag catattgata
     8041 caaattgctg ttttagatat tgttttttca ctcgactcgg ttattactgc tgtaggtatg
     8101 gttaataata tagaaattat gatgattgca gtggttgtag ctgtttttgt aatgatgctt
     8161 gcaagcaaaa gtatctcaaa tttcgttgat gataatccaa cgattaagat tttagctcta
     8221 gcatttttga ttttagttgg tgtaacttta gttgccgaag gtttggattt tcatatttca
     8281 aaaacttatg tatattttgc tatggctttt tctttgggtg tagaatccat caatatctat
     8341 atcaaaaaga agcgcttagc tcaagaaaaa tcttagaaaa tgatgataaa atatacaatg
     8401 atataaaaat ttaaaaagga aaaaaatgcc taaagatgca aatggaacag aattaaatgc
     8461 tggagatagc gtaagcgtga taaaagattt aaaagttaaa ggtgctagca ctactttaaa
     8521 acgcggaaca acgataaaaa atatcaaact tacttctaaa gaaaatgaaa ttgaagctaa
     8581 agtagataaa tttggcgtta ttgtactaaa gactgaattt ttaaagaaaa tttaggaaag
     8641 aatttgcgta ttttacttat tttaaggggg aattactacg caggacaaga agaatttatc
     8701 aaagaaaatc gcttaaaaga ttacactctt gatctaaatt ctttgcgttt gctttcagga
     8761 agtgtaagta aaatcgtaag taaatataaa aatttaaatc taaaaaatga tgaagaatta
     8821 tataaaattt tacttcaatt tttagaaatg cgtatgcaaa aaggtgaatt ttgcatcatt
     8881 aacgcttata atgaaaccct taaggtttat aaagaactag ctaagcaata tcgctatgat
     8941 atttatatta tagattttaa aagctcttta gaagaatgtc ttagaaaaaa cgagcaaaaa
     9001 gccaaagagc gtggctatat agtctcacaa tcacttttaa aaaaaaccca tcacctgctt
     9061 gaaagaattc ctaaaaaata tacgatttta aatcctaatg attggaaaaa atgcctttat
     9121 caaatgccta atcttagtaa gtataggaaa attcaccaca taggcgatat tcaaggctgc
     9181 tttagcatct taaaagaata tctacaagag ctcaaagatg atgaatgcta tatcttttta
     9241 ggggattata tcgatagagg catagaaaat ggcaaggtct taaaattctt gcttaaaatt
     9301 tgcgaaagag agaatgtata tttacttgaa ggaaatcacg aaagacattt gataaaatgg
     9361 gccaatggag aactatcaag ctctaaagaa tttaacgaaa atacactcaa agattttaga
     9421 aaagaaaaac tcacgcctag ggatgctaga aagttttatc cttacttaaa agaatgtctg
     9481 tactataaat ttcatgaaaa acaagttttt tgctcgcatg gcggggtaaa tcttttacct
     9541 tctaaggctt atcaaataag ctttatgcca agttatgatt ttatttatgg cgtaggaaat
     9601 tatgaagaga gtcaaaaagt agcaagtcag ttttgtgaat ttacaaaaga caatgtttat
     9661 caaatctttg gacatagaaa ccgcacaaaa ttgcctgtgc aaatagaaaa aagagtattt
     9721 ttgtgcgaag gtaaagtaga tgatggggga catttgcgta tagtaacttt agacaaaaaa
     9781 ggttttgagt gtatagaact taaaaataaa gtttatagaa agaaataagc caaaaaggct
     9841 tattcttcat ctttgttggt ttttttaacc accttaacac gctctataga attaccatcc
     9901 atttttttaa cttcatagta acaaagctca tcttcaatgc gatcgcccgc tacaggcaag
     9961 cgtcctaaaa ggttaaacac ataaccccct atcgttactt gctctaaatc ttcatcgtag
    10021 cttatcaaaa gcatttcttc aacggtttct atatcgcaac gaccttggaa ttcatagata
    10081 ttttcagcaa gttttttata gctatcttct tcattttcac tcttaatctc accgataatt
    10141 tcttccatga tatcttccat ggttaaaatt ccagctgttc caccgtattc atcaatcaca
    10201 agtgcagtgt gagaacgctc tttattcatc atcacaagaa cttttgaaat gctaatattt
    10261 tcaggaacta aaatcaaagg cttaacaaaa gtatctaaat tttcactctt atcactaagc
    10321 tcattttgca ctatatctcg tatatgtatc atacctaaaa tagtatcttt agaaccatct
    10381 atatatggaa aacgcgtatg cttatgatcg caaatgattt gcatatt
//
LOCUS       DARAII010000059        10385 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.059, whole genome shotgun sequence.
ACCESSION   DARAII010000059 DARAII010000000
VERSION     DARAII010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10385
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.059"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..137)
                     /locus_tag="SB143_001188"
     CDS             complement(<1..137)
                     /locus_tag="SB143_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEF9749723.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     G"
     gene            complement(137..928)
                     /gene="rpsB"
                     /locus_tag="SB143_001189"
     CDS             complement(137..928)
                     /gene="rpsB"
                     /locus_tag="SB143_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEF9749724.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALPSEEKEITDEEKKEVLDEAMSEEDFNGEQE"
     gene            complement(1045..2208)
                     /locus_tag="SB143_001190"
     CDS             complement(1045..2208)
                     /locus_tag="SB143_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEF9749725.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFYVGNQPAKFSLIFKE
                     KIPLLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNKEDILSKIAQ
                     KEESKNIKSHYDIGNDFYRLWLDDTMSYSCAYFKTSSDTLYEAQINKIEHTLKKLDLK
                     PNEKLLDIGCGWGWLSIMAAQKYGVKVVGVTISEEQCKKAQERVRELKLEDRVEIRLQ
                     NYQDLEFEDYFDKVVSVGMFEHVGKENLGLYFMKAKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRIHYAKTLDIWSENFNQVLPQ
                     VREKYDEEFVRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKEYIYK"
     gene            complement(2334..3458)
                     /locus_tag="SB143_001191"
     CDS             complement(2334..3458)
                     /locus_tag="SB143_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c1"
                     /protein_id="HEF9749726.1"
                     /translation="MRELKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDYAAED
                     TAYAKGIIAEKEIALEDAKKSNDAKRIESAQKDLDKAKENLAKVEELWADVAKIDFTK
                     GNAAKGKEFFNNNCFACHGVKEDDIAANITDSSLGVIPPDLSSAGVIFDEKFLAALIM
                     NPALALKVDHKFGDAFIMTAYNSEVSGDSEELVNANIADVIAYLKEVGLKFEAKENAT
                     IKQEAELKYSKIEDANEKSALVEKEIAFAKDKSTFIEACGRCHDIKYDNFFTPSNHND
                     LANYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEDAQVKVVSYLE
                     KVGDSKKEERESTGIYIMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(3455..4705)
                     /locus_tag="SB143_001192"
     CDS             complement(3455..4705)
                     /locus_tag="SB143_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEF9749727.1"
                     /translation="MAHIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFTVLFITGLLLVMYYKPDTALAFDSVNKTIMQEVEYGWLWRHMHGVAASVIF
                     LIIYIHMLTGIYYGSYKRGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPLIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEIAEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYICLFMIFFFYLVSFKF
                     GFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     IIFFLLPWLDRSDVVKPAHERPLFFIWFWVLLIDLIVLTIYGKLPPTGVNAWVGFYAS
                     IIFLLLFIVVLPVITIMERKGAKQ"
     gene            complement(4707..5210)
                     /gene="petA"
                     /locus_tag="SB143_001193"
     CDS             complement(4707..5210)
                     /gene="petA"
                     /locus_tag="SB143_001193"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEF9749728.1"
                     /translation="MATSESRRSFMGFAFGTVAAVGGVFSLVAVKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDPNMEKDTKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYHASEQLFKCACHGGEFDTSGKNTFGPPPRPLDIPPFKIDGTKLVLGEEGPEY
                     KKMTEEA"
     gene            complement(5300..6568)
                     /locus_tag="SB143_001194"
     CDS             complement(5300..6568)
                     /locus_tag="SB143_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEF9749729.1"
                     /translation="MLASVIFIITLILLFWRPWNLPLWLIAIFGALFAFIFKLVNLED
                     ASFVFNLVWDSSLTLVGLIILSFSLEVLGFFSFIAIRILRLSKLKNSHAIHTKKLMLF
                     MLAFVFCLSALFGNDGAILIITPIVLALFSTLKNYKESAILSAFLLSVSFLCDASSNA
                     LIISNLTNIITANYFNLDFLEFAKTMFLPNLFVLLSTIIMVFLIFAKILPKGLEINIL
                     SNDCISVKLFIFCVIYLIFFVSSFFIGEIYNLNASFFAVSGALLFWFFVCFLKKREAL
                     KIIKNVPWGIFAFSFGLYMVVFALHKVGISDILIFIYDILAQNAITAIFGTGFISAFL
                     SSVFNNLPMALIGDLALKNFPQSMVYAHLLGVNIGPKLTPIGSLATLLWLGLLAKKGI
                     EISFWKYCKFGFLITLPVLTCSLFALVLQY"
     gene            complement(6568..8427)
                     /gene="mnmG"
                     /locus_tag="SB143_001195"
     CDS             complement(6568..8427)
                     /gene="mnmG"
                     /locus_tag="SB143_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEF9749730.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVRGSRAQIDMDKYRIV
                     ARNKLLKLKNLEISQEQVYELIYENGSVVGVKTNLQNTYEAKKVILTTGTFLNGLIHV
                     GENKLTAGRVGELASVNLGQNLLSTSLKMGRLKTGTCPRVDAKSIDFDVLEIQYGDQN
                     PKAFSFRTKNFNPIQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFEEAKITRFG
                     YAIEYDYIEPTELYHTLETKKIKNLYCAGQINGTTGYEEAAAQGFMAGVNAVLALDNK
                     EPFILRRDEAYIGVLIDDLVIKGTKEPYRMFTSRAEFRLLLREENAIVRLGKYGKELG
                     LLEDESYQFIENIRLNTQKGLELLLEKEFTPNTENNAFLASIGEEKITSIVNLQKIVA
                     RSSFDIEKLKKLNTIFENMDEYSLREILNEAKYYHYIAMQKSQVEKMKNLIDMKIPSD
                     FDFTSVSGLSNEVVEKLQKHKPLTLFAASEISGITPAALDILQIYIKMQKKKS"
     gene            complement(8514..9011)
                     /gene="cetB"
                     /locus_tag="SB143_001196"
     CDS             complement(8514..9011)
                     /gene="cetB"
                     /locus_tag="SB143_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEF9749731.1"
                     /translation="MSREIFLQEDSLITSKTDLKGRIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMREGKEIFAYVKNKTKDNNYYWVFANVTPSIDINNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRVEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQETR"
     gene            complement(9029..10381)
                     /gene="cetA"
                     /locus_tag="SB143_001197"
     CDS             complement(9029..10381)
                     /gene="cetA"
                     /locus_tag="SB143_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002817166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEF9749732.1"
                     /translation="MFLSIIGILGAIFFHIYVGVIIFVLIAVLMIYLLRQHKDEQIMI
                     DKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLREINTSISCSQ
                     KGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMDLSLGNQNKD
                     MSQISSSLNQDISMMKNVYDTVDAITHTATENGSEVDSLQSAMGSLMDVVNSSKETVQ
                     TFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERT
                     QRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRLEENSSALGV
                     NFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQDERAQGVINE
                     LSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRSAEILAKLKI
                     "
BASE COUNT         3562 a         1995 c         1325 g         3503 t
ORIGIN      
        1 aagccttttt ctcttaaaag ttgaactgct ttatcaaagt ctccatttgt ttcactcaaa
       61 gcatttttac aatccatcat ccccgcgcct gtactttcgc ggagttcttt taccattgca
      121 gcagtaattt cagccattat tcttgctccc cattaaaatc ttcttcactc attgcttcat
      181 ctaaaacttc ttttttttct tcatctgtga tttctttttc ttcacttggc aaagcttcgc
      241 catcttgttc tcttaacgct tttccttcat tgatagcttc agccatttct tggcagaaaa
      301 gttgcactga gcggattgca tcatcatttc ctggaatagg ataagttaca agatcaggat
      361 cgcagtttgt atctaacgga gctactacag ggattcttag tctatttgct tcttgaactg
      421 caattttttc ttttactgta tctataacaa aaatcatatc tggttgtgtt ttcatataac
      481 gaattccacc aagataagcc aataattttt ctttttttct tgtaagcatt aaagcttctt
      541 ttttggttaa aagtttaata cttccatctt cttccatttt ttcaataact tctaattttc
      601 taattgattg gcgaatggtt ccaaaatttg tcatcatacc gcccaaccat ctgtgattta
      661 cataaggcat accgcatttt tcagcatatt ctttaatcgc tccacccgct tgtttttttg
      721 taccaacaaa aagtatagtt tttccttcag cagcagcatc gcgaacgata ttgtaggtat
      781 atctaaaata tctcaaagtt ttttgtaagt ctattacata aatacctttt ctctcaccaa
      841 aaataaattt tttcattttt ggattccagc gtcttgtttg gtgtccaaag tgtacaccac
      901 attccaataa atctctcata cttaccatga gtttctcctt ataatttagc tttattcctc
      961 cgcatccctt atctataaaa caagctaaaa ggacttgatg cgtgtgaaat gaagctaaaa
     1021 ttatatcaaa tttaagttta gtatttactt ataaatatac tctttagtaa ggctaagatt
     1081 attattgatt tctttcgtaa ttaaaaattg aaacaaatct acacttccaa cgcgaaatgc
     1141 agaagcacaa gaacgaagat acagatccca cattcttaca aattcttcat catatttttc
     1201 tctgacttga ggtaatactt gattaaaatt ctcactccat atatctaaag ttttagcata
     1261 gtgtattctc aagctttctg ccaaaagaag atgaaaatcc cactcactca tagcacttac
     1321 aacctctctt aacgatggca aataacctcc tggaaaaata tatttatcta tccaagcatt
     1381 agtttttcct tcaaacattg ccaaaattga atgcaaaagc atagaacctc ctggttttaa
     1441 tacttgtttt gccttcatga aataaagtcc taaattttct ttacccacat gttcaaacat
     1501 tcccactgaa acaaccttat caaaataatc ctcaaattct aaatcttgat aattttgaag
     1561 tcttatctcc actctatctt caagcttaag ctctcttact ctttcttggg ctttcttgca
     1621 ttgctcttct gaaatagtaa ctccaacaac cttaactcca tatttttgtg ccgccataat
     1681 agaaagccaa ccccaaccac aacctatatc caaaagcttt tcgttaggtt ttaaatcgag
     1741 ttttttaaga gtatgctcta ttttattgat ttgagcttca taaagagtat cgctagaagt
     1801 cttaaaataa gcgcaagaat aactcatcgt atcatcaagc caaagtctat aaaaatcatt
     1861 gcctatatca taatgacttt tgatgttttt actttcttct ttttgggcta ttttactcaa
     1921 gatatcttct ttatttttta aaaaacgttt attggaaaaa taatacaaaa ctttagctat
     1981 ttcatcataa tcaccctcta tttctaactt ggactccata taatgttttg caaaaactaa
     2041 actcgtatca ctaaataatt ttaacaaagg tattttttct ttgaaaatta aagaaaattt
     2101 agcaggttga ttacccacat aaaattcttc ttgatcccaa aatacaattc taaaatttcc
     2161 ataattccat tttgaaagaa taaatttaat catttgtttt tcaagcatga tatactccaa
     2221 ttaataaaaa ttattatttg tagtatctct taattaggtt taaaatttaa taaaatcgaa
     2281 gaaaagaagg atttttgcca cagatgtaaa atagtggcaa aaattttata atattaatgt
     2341 agtttagacc aaacagaacg cttccagcct atagcaaaaa tacttagaat tacaaagaat
     2401 atcattatat aaattcctgt gctttctctt tcttcttttt tgctatcgcc cactttttca
     2461 agataagaaa caactttaac ttgtgcatct tctgttaaac ctactcttgg catagcagtt
     2521 cctggaagaa gtttttgagt attattgata aaatcatgca agtattgctc cccgcgagat
     2581 ctaatcatca tagaaagatc aggtggaacc gaacctaaat aatttgccaa gtcattatgg
     2641 ttagatgggg taaagaaatt atcatactta atatcatgac aacgaccaca agcttctata
     2701 aaagtacttt tatctttagc aaaagcaatt tctttttcaa ctaaagctga tttctcgtta
     2761 gcgtcttcaa tttttgagta cttaagctct gcctcttgtt taattgtagc attttcctta
     2821 gcttcaaatt taagacctac ttcttttaaa taagcaataa catcggctat atttgcattt
     2881 acaagctctt cactatctcc tgaaacctca ctattgtaag cagtcataat gaaagcatca
     2941 ccaaatttat gatctacctt caaagcaaga gcaggattca tgatcaaagc agctaaaaac
     3001 ttctcatcaa aaataacacc tgctgagcta agatctggtg gaattacacc taaagaagaa
     3061 tctgtaatat ttgctgctat atcatcttct ttaacgccat gacatgcaaa acaattatta
     3121 ttaaagaact ccttgccttt tgcggcgttt cctttagtaa aatcaatttt tgcaacatct
     3181 gcccaaagct cttctacttt agctaaattt tctttagcct tatctagatc tttttgagca
     3241 ctttctattc tttttgcgtc atttgatttt ttcgcatctt ctaaagctat ttctttttct
     3301 gctataatac ctttagcata agctgtatct tctgctgcat aatcaaaatt agcaggagca
     3361 acatggggtt tcattacaga gtgcgcataa ggctcaactc cccaataaac aagagcagta
     3421 aaaactacta ctactaaaaa tatttttagc tctctcattg cttagctcct tttctttcca
     3481 tgatagttat tacaggtaaa acgactataa ataaaagtaa aaatattata gaagcataaa
     3541 aaccaaccca agcatttaca cctgttggag gtaattttcc ataaatagtt aaaacgatga
     3601 gatctataag caatacccaa aaccaaataa aaaataaagg tctttcatga gctggtttta
     3661 caacatcact tctatcaagc caaggaagta agaagaaaat aatttgtgcg ataccaaaag
     3721 cagccaaacc tatatcaaaa gctttaatac ctgcaatatc aaagaaaaat cctcttaaaa
     3781 cttcataact ccacaagaaa taccactcag gataaatatg tgctggggtt ttaagtgcat
     3841 tagctggatc aaagttgata ggatccattg caaaaccaaa tttaaaactt accaaataga
     3901 aaaagaaaat cataaaaaga caaatataca taaagtcttt agataaaaat cctggccaaa
     3961 aaggaattac tttagaacct tttgtatcac ctgccatgta tttttcagct tctaaatcaa
     4021 aatctaattc ttcagcaatt tcattattta catgaggaat tcttaaagaa taaaagtgga
     4081 atgctatgat agcaatgatt actataggaa gtaaacatac atgaagcata aaaaatcttg
     4141 tcaaagttgg atcagaaact gcataatcac cacgaatcca aataacaagc tcaggtccaa
     4201 taagtggaat tccaccaaaa agattagtaa taacttgagc tgcccaataa ctcatttgtc
     4261 cccaaggaag catatatcca ctaaaagctt cggcagagaa tactacaaaa agtagcatac
     4321 cgcttaccca aatcatctct ctaccacgct tataagaacc ataataaatt cctgttagca
     4381 tatgaatata gataattaag aagataaccg aagcggcaac accgtgcata tgacgccaaa
     4441 gccaaccata ttccacttcc tgcatgatag ttttatttac actatcaaaa gcaagagcag
     4501 tatcaggctt ataatacata acaagcaaaa gccctgtaat aaaaagcaca gtaaaaagag
     4561 tagttaaaat aactcccatt gcccaaagaa aattgatttg ctttggaatc caatatttta
     4621 ccattaaaac atcaagtaat ttatgtactg ctagtctttg atcaagccaa tccactagcc
     4681 cattagcctt tctaatatgc gccatattaa gcttcctccg tcattttttt gtattctgga
     4741 ccttcttcac ctagaacaag tttggttcca tctattttaa aaggaggtat atcaagaggt
     4801 cttggaggag gcccaaaggt attttttcca cttgtatcaa attcaccacc atgacaggca
     4861 catttaaaaa gttgctcact tgcgtgataa gcaggaatac aacccaaatg agtacaaagt
     4921 cctataacaa cagtatatgc agcattatct accacaacat ctcgctttgt atccttttcc
     4981 atatttggat ctttttttaa gataaaaata ggctttttac gccattctat agttctaagc
     5041 tctccatctt gcattcctga taaatctact gtagtaaaac ccgcagcttt aacacttgga
     5101 agcggatccc aagttttttt caccgcaaca agtgaaaaaa caccgcctac agcagctact
     5161 gttccaaatg caaaacccat aaagcttcgt ctactttcag atgtagccat aactttgtcc
     5221 tttcgttttt ttatttttaa ccaaattatt agtgtatcta aaataaaata aattttttct
     5281 ttgtttacta agttttgttt taatattgta aaacaagtgc aaaaagtgaa caagtaagta
     5341 ctggtaaagt gattaaaaaa ccaaatttac aatacttcca aaaagaaatt tctatacctt
     5401 tttttgctaa aagtcccaac caaagcaagg tagctaaaga acctatggga gtaagttttg
     5461 gtcctatatt aactcctaaa agatgtgcat aaaccatact ttgaggaaaa ttttttaaag
     5521 ccaaatcgcc aatcaatgcc ataggcagat tattaaatac agaagaaaga aaagccgaga
     5581 taaaccctgt tccaaaaata gcagtaattg cattttgagc caaaatatca tagataaaaa
     5641 ttaaaatatc gctgattcca actttatgta aggcaaaaac caccatatag agtccaaaac
     5701 taaaagcaaa aataccccaa ggtacatttt tgataatttt caatgcctct ctttttttta
     5761 aaaaacaaac aaaaaaccaa aagagcaaag cgccgcttac agcaaaaaaa ctagcattta
     5821 agttataaat ttctcctata aaaaaacttg atacaaaaaa tattaaataa ataacacaaa
     5881 aaataaaaag ctttaccgaa atacaatcat ttgataaaat attgatttca agccccttag
     5941 gtaatatttt tgcaaaaatc aaaaatacca ttataatagt agacaatagc acaaataaat
     6001 taggcaaaaa catagtctta gcgaattcta aaaaatcaag attaaaataa ttagctgtaa
     6061 taatatttgt caaatttgag ataattaaag catttgaact tgcatcgcac aaaaaagaaa
     6121 cactgagtaa aaatgcactt aagatagcgc tttctttata atttttaaga gttgaaaaaa
     6181 gcgcaagtac aataggcgta atgattaaaa tagctccatc atttccaaat aaagccgaaa
     6241 gacaaaaaac aaaagcgagc ataaaaagca ttaatttttt agtgtgaatt gcatgagaat
     6301 ttttaagttt tgaaaggcgc aaaattctta tagctataaa gctgaaaaac cctaacactt
     6361 ccaagctaaa ggaaagtata atcaagccca caagtgttaa ggagctatcc caaacaagat
     6421 taaaaacaaa agaagcatcc tctaaattaa ccagcttaaa aataaatgca aacaaagccc
     6481 caaaaatagc aatcaaccat aaaggcaaat tccacggacg ccaaaaaagt aaaatcaagg
     6541 taattataaa aattacactg gcaagcatta agattttttc ttttgcattt ttatataaat
     6601 ttgtaaaata tccaaagccg caggggtaat cccactgatc tcactcgctg caaaaagcgt
     6661 taaaggctta tgtttttgaa gtttttctac aacttcatta ctcaatccac tcacacttgt
     6721 aaaatcaaaa tcacttggaa ttttcatatc aattaaattt ttcatttttt caacttgtga
     6781 tttttgcata gcgatataat gataatattt agcctcattt aaaatttctc ttaaagaata
     6841 ctcatccata ttctcaaaaa tcgtatttaa tttttttagc ttttctatat caaaactcga
     6901 tcttgcgaca attttttgca aattgactat ggaagtgatt ttttcctctc ctatactcgc
     6961 tagaaaggca ttattttcag tatttggagt aaattctttt tcaagaagta attcaagtcc
     7021 tttttgagta tttaaacgaa tattttctat aaactgataa gactcatctt ctaaaagacc
     7081 caactcttta ccatactttc caagtcttac gatggcattt tcttctctta aaagcagtct
     7141 aaattcagcc cttgaagtaa acattctata aggctctttt gtgcctttaa tgactaaatc
     7201 atcaatcaaa acaccgatat aagcttcatc tctacgcaaa ataaaaggtt ctttattatc
     7261 caaagctaaa acagcattca ctcccgccat aaaaccttga gccgctgctt cttcatatcc
     7321 tgtagtgcca ttaatttgtc ctgcgcaata aagattttta attttttttg tttctagagt
     7381 atgataaagc tccgttggtt ctatataatc atattctata gcatagccaa agcgtgtaat
     7441 tttagcctct tcaaaacctt ttactgagcg taacatttga gtttgtactt cataaggtaa
     7501 agaagtagaa aaaccgttaa tataatactc cgtcgcatcg atagtttgag gctctataaa
     7561 aagatgatga ctttctttgt cgctaaaacg attgatttta tcttctatag aaggacaata
     7621 tcttggcccc acaccttcaa tctgtcccgt aaaaagtgga gcacgataaa aattattctt
     7681 aataatctca tgtgtagttg tattagtgcg tgcgatataa caaggaagtt gtatgggatt
     7741 aaaatttttt gttctaaagc taaaagcttt agggttttga tcgccgtatt gaatttctaa
     7801 tacatcaaaa tcaatactct tagcatccac tcttgggcaa gtccctgttt ttagtctacc
     7861 catttttaag ctagtactta ataaattctg acccaaattc acagaggcaa gctcccctac
     7921 cctacccgct gtaagtttat tttcccccac atggataagt ccgtttaaaa aagtccctgt
     7981 agttaagatc actttcttcg cttcataagt attttgaaga ttggttttaa cccctacaac
     8041 gctaccattt tcataaatca attcgtatac ttgctcttga gaaatttcta aattcttaag
     8101 ctttaaaagc ttattgcgtg caacgatacg atatttatcc atatcaattt gcgccctact
     8161 tcctcgcacc gcaacaccct tgctttcatt taaaatgcga aattgtatcc ctgcttcatc
     8221 ggtgatttca cccataagac cacccatggc atcaagttct tttacaagat gaccctttgc
     8281 aagtccacct atagccggat tacaacttgc tgctcctatt tgctcaatca atgtagttaa
     8341 aagtaaggtt tttttaccca ttctagcagc agcagcactt gcttcaacac ccgcatgtcc
     8401 gccacctata acaatgacat caaacatatt ttgccttaaa aatgtgaatt attaaaagaa
     8461 agattatata atacttagac ttaaaacaaa ctcgttttaa gtctaacaaa aaattatcta
     8521 gtttcttgaa gagagaaaat taactcatta taagttttat ctgcatcttt gcagaaattt
     8581 ttaagcatct caacaccctt atttaaacct tgttgttgtt ctactcttag aagatcacta
     8641 taaaggcttt ctatcgtaga aatagcgctt ttatttggca tacgacgaac ggaataatag
     8701 cctatgatat tattattaat atctattgat ggagttacat ttgcaaaaac ccaataataa
     8761 ttattatctt tggttttgtt ttttacgtaa gcaaaaattt ccttaccctc tctcatataa
     8821 tcccataaat atttaaaaac agtttttggc atctcttcat gtcttactat gttatgaggt
     8881 ttatttaaaa cttcacccat ggtataacct gcatatttta aaaaatcatc atttgcataa
     8941 actattctac cttttaaatc tgttttagaa gtaattaaac tatcttcttg caaaaaaatt
     9001 tctcttgaca ttttcccacc ctcttaattt atatttttaa ttttgctaag atttcagcac
     9061 ttctttgctc tagtgattta atatcattta caatcgcatc ataagctttt tgatcgatat
     9121 aatcttgact tgattcttct attgcttttt tagcgttatc ttttataaat tctttagcta
     9181 aatttaactc agtttcagaa ctaagctcat taataacacc ttgagctctc tcatcttgac
     9241 aaagattaga aattggatct acactttcaa gattgaaatt ttgagcccca tttaaattta
     9301 aatatatatt tgatttataa agaatatgat cgattttaac cacagataaa atcaatctct
     9361 ttgcaaagga tccaaaatta acaccaagag cactactatt ttcttctaga cgtttaaaag
     9421 cttgagaaaa tttattaatt ctttcttcag attcactaac aatgttaaaa acttgctcac
     9481 tgccactttg gatatttaca aaatcttgtt gcatagtctg aattgcaata gaaatttcac
     9541 ttgtagatct ttgagtcctt tctgctaatt ttctaacctc atcagccaca accgcaaagc
     9601 ctctaccatg ctctcctgca cgcgcagctt caatagcagc atttaaagct agaagattgg
     9661 tttgatcagc tatatcacgt attacttcaa ccactgaagt gatattttga gaattagcca
     9721 caaaagtttg cactgtttcc ttgcttgaat ttacaacatc cattaaagaa cccatagcac
     9781 tttgtaaaga atccacttct gagccatttt ctgtagctgt atgagtaatg gcatcaactg
     9841 tatcatatac atttttcatc atgctaatat cttgatttaa tgagctagaa atttgagaca
     9901 tatctttatt ttgatttcca aggcttaaat ccattaaagt tcttgataaa gcatttttaa
     9961 aagtagatct tgctgtcact tctatgtttg ctaaagcttt atttataaat tcgatattat
    10021 gagcaaaaat tccttttaaa ccttcaggca aagccttgcg ataaaattca cctttttgag
    10081 aacatgaaat agaagtatta atttccctta agtaagcttc tagcccatca atagtattgt
    10141 taagattatc tgctatttcg gctaattttt tgctttttgt ttttacatag atgattctat
    10201 tgtcaaaatt tccttctttt aactctctac aaagaaccaa aagtttatct atcattattt
    10261 gctcatcttt gtgttgtcta agcaaataaa tcattaaaac agcgattaaa acaaaaatta
    10321 tcactccaac ataaatatga aaaaaaatag cacctaaaat accaataatg cttagaaaaa
    10381 tagtt
//
LOCUS       DARAII010000060        10355 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.060, whole genome shotgun sequence.
ACCESSION   DARAII010000060 DARAII010000000
VERSION     DARAII010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10355
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.060"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..350)
                     /locus_tag="SB143_001198"
     CDS             complement(<1..350)
                     /locus_tag="SB143_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEF9749733.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATGADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKG"
     gene            complement(360..1523)
                     /gene="sucC"
                     /locus_tag="SB143_001199"
     CDS             complement(360..1523)
                     /gene="sucC"
                     /locus_tag="SB143_001199"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEF9749734.1"
                     /translation="MNIHEYQAKAIFADNGIPTLKGKVAFSVEEAVENAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVAKVLGLDKDESKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASAETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKAILDSSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(1520..2428)
                     /locus_tag="SB143_001200"
     CDS             complement(1520..2428)
                     /locus_tag="SB143_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEF9749735.1"
                     /translation="MKITIIGAGNVGSSVAYALILRELANEIVLVDINEDLLIARELE
                     LSQSIAALNLDIELTCTKDYTYTKNSDIVLFSAGFARKDGQSREELLQLNTNIMLDCA
                     KKIKEFNPDPLFIILTNPVDFLLNTLYESGIFSSKKIVAMAGVLDNARFKYEVAKKLK
                     ARISSVDTRLIGFHNDDMVLVKSYASVKNQKLGELLSEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACVRMLESIRSGEFLPMSVILHGEFGVQNKALGTMARLGLEGVVEIM
                     KLELSDEEKDKVKKSLIKYQYIKEDK"
     gene            complement(2425..4629)
                     /locus_tag="SB143_001201"
     CDS             complement(2425..4629)
                     /locus_tag="SB143_001201"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEF9749736.1"
                     /translation="MQVTYTLTDESPALATYSFLPIVKAFLSKAHIGVKTSDISLSGR
                     ILATFSEYLKEDQRCEDALELLGELVKKSDANLIKTPNISASIPQLKAAIKELQEKGY
                     MLPNYPDEPKNDEEFQIKAKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDEDCVASIEFVADSGKSEILKEGLKLEKNEI
                     LDATFMDVEKLQDFYAKEIKASKDNDLLFSLHLKATMMKVSDPILFGYAVKIFFKELF
                     DEFKDEFETLGINPNNGLSELLSKVQTSSKKDEILRRYNEILNSRADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPAKLGSVSNVGLMAKKAQEYGSHDKTFVAKEDGVFKIIAKGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERADLTGAEAIFWLDSKRASNKIMIDLVQNRLKEKNKNIA
                     ILAPYEACLKSLELIRAGKDAISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLKGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCNNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQANDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAIIEKIGQR"
     gene            complement(4746..7316)
                     /locus_tag="SB143_001202"
     CDS             complement(4746..7316)
                     /locus_tag="SB143_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEF9749737.1"
                     /translation="MKKKIVYALLVLIVFISVVFLVLKNGILISHIQFSFLNLEQLYI
                     KLDKKLIVRAKNITFNEDNNASIQDDKNVNSDFASKELLNITKNLKYFYTFVEEIDIQ
                     NFNIKDNHMRILFKNDEFFVDNDLLFLKLALHREGKEINADIKNLLLKDYNLSIDGNL
                     SINAKSEFYNFKGQANSDLADFKINISYKNQNLAYKFEDINIRDITTIFNQAKKRIAL
                     PEPLVLWVAHRAKGDFYHFDFIQGFIDFSKNNYYFDDISAWGYANNVKVRLDNQMNAI
                     NFPKLDLNLSNQKLNFTFNKASYNESDLSESKVFLYDLFDNKKHGIYLRIKSKNLKFD
                     EKLAKALKNYDLNLPFYQKNGKLGSDLELIIDFNEKGDVKYNGTLSLENAELSLANFS
                     VARAFVKLNQNALSIENASVKNEFLEADFNAKIDLATHKGIFDTQISRLYFDNGELFD
                     MRNQKTKINLDYTDDLQLSVPEWDLTLNFKEGLEAYANNPNILIPHSPLLKKFGFMGA
                     KSIYYKSVDFNDFNAQIQDAHFKNNLLVNNKPYENDSFGIVRKSGVLNINTQSGLANV
                     KVIDNNKTIHLKNLTYIYQKDENASTSSFDIAKNTQNIILNGENLTLILADFNKTLNF
                     DKMEANLKSDILDARATRKNANFDLHYSPNDLKLFIKNINDEHLNEFLQKRAVQEGVF
                     NFSVIGSGLDYFEGEFNFKDTFIRDLKGVNQLISFIDTVPSLLMFKTPTFNEKGLSLH
                     DGRVVFNRKKDLLSFEAINLNGNSMDLYGLGSANLRLNTIDIDLELKTLKSASETISK
                     VPILNYVILGKNQEISANIKVDGALDDPKFHTQILSDTLKTPFNLIKNIIQLPSNLFN
                     "
     gene            7231..8232
                     /gene="mltG"
                     /locus_tag="SB143_001203"
     CDS             7231..8232
                     /gene="mltG"
                     /locus_tag="SB143_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEF9749738.1"
                     /translation="MRIPFLRTKNTTEINTIKTSNAYTIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFLPQGSIAQIITHLKQNKYEMSTIDKYILFFLGHPQSGWINIGTKELN
                     RIEFLHKLTIAKAALETLTLIPGETSVIFLEQAAKQLELDKNTLLAEFEKQATYKEGV
                     FLPETYKIPKGITEALLVQVLLKHAENSNRKTSEKIFGEYNAKKWHQYIITASVIQKE
                     AANESEMPIVASVIYNRIKKGMKLQMDGTLNYGFYSHTKITPQRIREDNSSYNTYKFE
                     GLPKEAVCNVSLSAIRAAIFPAKTDYLYFVRDKTTGAHIFSTNLNDHNKAIQSQKNK"
     gene            8308..8739
                     /gene="flgB"
                     /locus_tag="SB143_001204"
     CDS             8308..8739
                     /gene="flgB"
                     /locus_tag="SB143_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEF9749739.1"
                     /translation="MINPFKSKELITSALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAITEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            8749..9243
                     /gene="flgC"
                     /locus_tag="SB143_001205"
     CDS             8749..9243
                     /gene="flgC"
                     /locus_tag="SB143_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEF9749740.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAQGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            9250..9549
                     /gene="fliE"
                     /locus_tag="SB143_001206"
     CDS             9250..9549
                     /gene="fliE"
                     /locus_tag="SB143_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEF9749741.1"
                     /translation="MNNINDLRLNNNISNANKSQNSNDKIGDEFAKMLKNEIEDLDKT
                     QKTAEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            9555..>10355
                     /locus_tag="SB143_001207"
     CDS             9555..>10355
                     /locus_tag="SB143_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEF9749742.1"
                     /translation="MQEHKKNRVSKVAFAYCMALFFMIIFLSSTFFLTSKRHIPNTEK
                     DQYSLALRGNIITKDNFTITSSRQIYRAEIDLRSINKDKFDLFLKLFQIYSGISDDEI
                     ADIKKRIQKQKKRSYHFILSQNLDSKQASYLRDLAKKLYIQGFFKAFTNNLGKVETRG
                     LSIIEHEEDRIYMSKDALTPAIGYTKMVLDPQSGILKNVGVKGLEKYYDDCLSPLQNE
                     KIQGLKDIGGNIILNLNSLQQKKIDGCLLYLNISLKLQKSIEKAIDGRN"
BASE COUNT         3556 a         1848 c         1371 g         3580 t
ORIGIN      
        1 atgccttttt tatttgcata ctgcttggca aacatcatat ctttaaccgg agtatgttct
       61 gtaattacaa cagcaagctt aatgcctgca tccgctgctt caatcacact atcacctact
      121 gcaaaagcag gaacaaaaat caaacttaca tcagctcctg tggctttaac tgcatctgca
      181 actgtatcaa aaacaggctt gccaagatga gtttgaccac ctttatgagg agttacacct
      241 ccgactatat ttgtaccata agccatacac tgctctgcat gaaaagttgc ttctttacct
      301 gtaaaacctt gaactattac ttttgtattt ttattaacca atatactcat tttttatcct
      361 tatcctacta aactttttac taattctgca ccatttttaa gattggttgc tgctttgata
      421 tttttaagat ttgaactatc taagatcgct tttgcttcag ctgcatttgt accatcaaga
      481 cgcactacga taggaatgtt cacctcaaca tttttagttg cctccaaaat accatttgcg
      541 attctatcac aacgaacaat accaccaaaa atattgataa atattacttt aacattttta
      601 tctcttaaaa tgatttcaaa agcttttgca actgtttcag cagatgcgcc accgcccaca
      661 tctaagaagt ttgcaggttt tgcaccacta taattgataa tatccattgt tgccatagca
      721 agtcctgcac catttaccat acaagcaaca tcaccgtcta attttacata acttaaacca
      781 aattcagctg cttctctttc agcaggattt tcttctgtga tatctctaag ttcggcaatc
      841 tctggatggc gataaagcgc actgtcatca aaactacatt ttgcatcaag agcgtaaaaa
      901 tctccttctg cagttttaat taaaggattg atttcaagca tattcatatc tttatccata
      961 taaagcttat aaagttttgc tatcatagaa ataagttttt tgctttcatc tttatctaat
     1021 cctaaaacct ttgccacttc aagaccatga aacattttaa agccaatttg tggatcaatg
     1081 cctacttttg cgattttttc agggctttct ttagccactt tttctatatc catcccccct
     1141 tcgcttgaag caatgattgt aatttgttct gccattctgt taaataaaat agccaaataa
     1201 tattctttta ctatatttgc accactttct atataaagtt tttgcacaag cttaccttca
     1261 ggtcctgttt gatgagtaac caaattcatt cctaaaattt tacttgcata atcttttacc
     1321 tcatctaaat ttttagcgat tttaacacca ccgccaagac cacgaccacc tgcatggatt
     1381 tgagctttca cagcccaaac gctaccgcct aattctttag cattttctac agcttcttct
     1441 acgctaaatg caacctttcc ctttaaagta gggataccat tgtctgcaaa aatcgctttt
     1501 gcttgatatt catgtatatt catttatctt cctttatata ttgatatttt attaatgatt
     1561 tttttacctt gtctttttct tcgtcgctaa gttcaagctt cataatctca acaacgccct
     1621 ctaaacccaa tcttgccata gtacctaaag ctttattttg cactccaaat tctccatgca
     1681 aaatcacact cataggtaaa aattctccac ttcttatgga ttcgagcatt cttacacaag
     1741 cgcttgcagg tgccaaatat gctgaagttt taagatgttt aatcaccttt gctccaccgg
     1801 ttttaacttc attttccaaa tcctcaaatt cttcttcgct taaaagttct ccgagttttt
     1861 gatttttaac acttgcataa gattttacta aaaccatatc atcattatga aaaccaatta
     1921 atcttgtatc cacacttgaa attctagctt ttaacttttt agctacttca tacttaaatc
     1981 ttgcattgtc taaaacccct gccatagcaa caattttttt agaagaaaaa attccactct
     2041 cataaagagt attgagcaaa aaatccaccg gatttgttaa aatgataaaa agtggatcag
     2101 gattaaattc tttaattttt ttagcacaat caagcataat gtttgtattt agctgcaaaa
     2161 gctcttctct actttggcca tcttttcttg caaatcctgc gctaaaaagc acaatatcag
     2221 aattttttgt ataagtataa tccttagtac aagttaattc tatgtctaaa tttaaagcag
     2281 ctatgctttg ggataattct aattcccttg caatcaataa atcttcattg atatcaacta
     2341 aaacaatctc atttgccaat tcacgcaaaa ttaaagcata ggctacgctt gagcctacat
     2401 tccctgcacc gatgattgtg attttcatct ttgtcctatt ttttctatga tagcattaaa
     2461 agttgcactt gggcgcataa ttttatttgc tttctcatca tcaaatttat aatatccacc
     2521 caaatcgact ttcacacctt gtgcatcatt aaattcggct ctaatttttt cttcattaga
     2581 ggaaagctct aaggcaatat ctttaaaaaa gctttgaagc tccatatcat ttgcttgtct
     2641 tgccaaatga tttgcaaaat acattgctaa ataaaaatgg cttgtacgat tatcatcttc
     2701 ttttactttt cttgatggag ctttattgtt ttcaagccat tcacctatag cctcatcaag
     2761 acattctgct aagactttag ctttatgatt attgcattta ttagcataaa attctaagct
     2821 tgcttgtagg gctaaaaatt cacccaagct atcccaacgc aaatgatttt cttcgactaa
     2881 ttgttctact tgctttggtg ctgaacctcc tgctccggtt tcaaacatag ctccaccctt
     2941 taacataggc acaacagaaa gcattttagc acttgttcca agctctagaa taggaaaaag
     3001 atcggttaaa taatctctta agacatttcc tgtaatagaa atagcatctt ttccagcacg
     3061 aatcaattct aagcttttta agcaagcttc ataaggagca aggatagcta tatttttatt
     3121 tttttcctta agacggtttt gaactaaatc tatcataatt ttattgctag ctcttttact
     3181 gtctagccaa aaaatcgctt cagctcctgt caaatcagct ctttctatac ccaaatcgat
     3241 ccaatttaaa acagcgtcaa atttagcttg attggctcta taaatatcac cttttctaac
     3301 tttatgctct aataaaacct tacctttggc aatgatttta aacactccat cttctttagc
     3361 aacaaatgtt ttatcatgtg agccgtattc ttgagctttt ttagccatca aacctacatt
     3421 agatacactg cctaatttcg caggatttaa agtgccattc ttatgcaaat cttcgataac
     3481 cgcttcataa atagttgcgt aagtttgatc agggataact gcatttgtgt ctttttcttt
     3541 gccttcttta tcccataatc ttgcaccatt tttaagcata gcaggcatag aagcatcaac
     3601 aataacatcg cttggaacat gtaaattggt gataccctta tctgaattta ccatagaaat
     3661 atcagcacga ctgtttaaaa tttcgttgta tcttcttaaa atttcgtctt tcttgcttga
     3721 agtttgcacc ttgcttaaaa gttcgctcaa tccattgttt ggattgattc caagtgtttc
     3781 aaattcatct ttaaattcat caaataattc tttaaaaaag atttttaccg cataaccaaa
     3841 aagtatagga tcgcttactt tcatcatcgt agcttttaaa tgaagagaga aaagtaaatc
     3901 attatctttg cttgctttga tttctttagc ataaaaatct tgcaattttt ctacatccat
     3961 aaaggttgca tctaaaattt catttttttc aagctttaag ccttctttta aaatttcact
     4021 tttgccacta tctgcaacaa attcaatact tgctacacaa tcctcatcga ttaaaaccgc
     4081 tttttcatta gaaaagaaat caccttcttt catataagat acacgagttt tagaattagg
     4141 attaaactca accacacgat aaggattatt ctttgcataa tcttttaccg ctttagtaga
     4201 acggcgatct gaattgcctt gtctaagcac aggattaacc gctgaaccta aaactttttg
     4261 atattttgct tttatttgaa attcttcatc gttttttggt tcgtctgggt agtttggtaa
     4321 catataaccc ttttcctgca attctttaat agcagctttc agctgtggaa tagaagctga
     4381 aatatttgga gttttgatta aatttgcatc tgattttttt acgagctcac ccaaaagctc
     4441 caaagcatct tcgcatcttt gatcttcttt tagatactca ctaaaagtag ctaaaattct
     4501 tccagatagc gaaatatcag aagtttttac tcctatatgc gccttgctta aaaaagcttt
     4561 tactataggt aaaaacgaat aggtcgcaag tgctggagac tcatctgtca aagtgtaagt
     4621 aacttgcatt ttctgtcctt ttaaacacta attttatttt tcaatctaaa gtatattaca
     4681 attaaaaaaa aatgcaagag taaatttaaa gtttgtttta gttttaaaac aaactttaaa
     4741 cacttttaat taaacaaatt agaaggaagt tgtatgatat ttttaatcaa attaaaaggg
     4801 gtttttaaag tatcgcttaa aatttgagtg tgaaattttg gatcatctaa agcgccatcg
     4861 acttttatat tggcgcttat ctcttgattt ttccccaaaa taacataatt taaaatcgga
     4921 acctttgaaa tagtttcaga agctgatttt aaagttttta attctaaatc tatatctatg
     4981 gtatttaatc ttaaatttgc actgcctaaa ccatacaaat ccatactgtt gccatttaaa
     5041 ttaatcgctt caaaacttaa caaatccttt ttacgattaa aaacaactct tccatcatgc
     5101 aaacttaaac ctttttcatt aaaagtagga gttttaaaca tcaaaagact tggaaccgta
     5161 tcgataaaag atataagctg attaacccct ttaaggtccc ttataaaggt atctttaaaa
     5221 ttaaattccc cctcaaaata atctaggcca ctacctatca cgctaaaatt aaagacaccc
     5281 tcttgcacag cccgtttttg caaaaattca ttcagatgtt catcgtttat atttttaata
     5341 aataatttca aatcattagg actataatga agatcaaaat ttgcattctt gcgagtagcc
     5401 ctagcatcta agatatcact ttttaaattt gcctccattt tatcgaaatt tagagttttg
     5461 ttaaaatctg ctaaaatcaa agtgagattt tctccattaa gtataatatt ttgagtattt
     5521 tttgctatat caaatgaaga agtagaagca ttttcatctt tttggtaaat ataagttaaa
     5581 tttttaagat gtatggtttt attattatca ataaccttaa cattagctaa accactttgt
     5641 gtatttatgt ttaaaacacc acttttacga acaataccaa agctatcatt ttcgtaaggc
     5701 ttgttattaa ccaataagtt atttttaaaa tgagcatcct gtatttgcgc attaaaatca
     5761 ttaaagtcta cacttttata ataaatactt tttgcaccca taaaaccgaa tttttttaat
     5821 aaaggcgaat gagggattaa aatattagga ttgtttgcat atgcttcaag tccttcttta
     5881 aaatttaaag tcaaatccca ttctggcaca ctaagctgta aatcatctgt atagtctaaa
     5941 tttatctttg ttttttgatt tctcatatca aaaagctcgc cattgtcaaa atataatctt
     6001 gaaatttgag tatcaaaaat acccttatgg gtagctagat cgattttagc attaaaatct
     6061 gcttccaaaa actcattttt tacgcttgca ttttctatac tcaaagcatt ttgatttaat
     6121 ttaacaaaag ctctagccac gctaaaattt gctaatgaaa gctccgcatt ttctaaagac
     6181 aaagtgccat tatattttac atcacccttt tcgttaaaat cgattataag ctctaaatca
     6241 cttccaagtt ttccattttt ttggtaaaaa ggtaaattta aatcataatt ttttaatgcc
     6301 ttagcaagtt tttcatcaaa ttttaaattt ttagatttga tacgcaagta aattccatgc
     6361 tttttattat caaataaatc atataaaaac accttgcttt cacttaaatc tgattcatta
     6421 taacttgcct tattgaaggt aaaatttaat ttttgattgc ttaaatttaa atcaagtttt
     6481 ggaaaattaa tagcattcat ttgattatcc aaacgaactt ttacattatt tgcataaccc
     6541 caagcactga tatcatcaaa ataataatta tttttagaaa aatcaataaa accttgaata
     6601 aaatcaaaat gataaaaatc tcctttagcc ctatgcgcaa cccaaagaac taaaggttcg
     6661 ggcaatgcta ttcttttttt tgcttgattg aagatagtgg taatatctct aatattgata
     6721 tcttcaaatt tataggctag gttttgattt ttgtaagaaa tatttatctt aaaatcagcc
     6781 aaatcactat ttgcttggcc tttaaaatta taaaattcac tttttgcatt aatacttaaa
     6841 tttccatcta tgcttaaatt ataatcttta agcaaaagat ttttaatatc agcattaatt
     6901 tcctttcctt ctctgtgtag cgcaagtttt aaaaacaata aatcattatc tacaaaaaat
     6961 tcatcatttt taaacaatat acgcatatga ttatctttga tattgaaatt ttgtatgtct
     7021 atttcctcaa caaaagtata aaaatatttt aaatttttag taatatttaa caattcctta
     7081 gaagcaaagt cagaatttac attcttatca tcctgaatac ttgcattgtt atcttcatta
     7141 aatgtgatat tttttgctcg tacaatgagt tttttatcta atttaatata taattgctcc
     7201 aaatttaaaa aactaaattg gatatgagat atgagaatac cattcttaag aactaaaaat
     7261 acaactgaga taaatacaat taaaacaagt aatgcatata caattttctt tttcattaga
     7321 aacttctttt tgatatttat tttaggaatt ttttattatt taacacaacc tttaaaaagc
     7381 aattctgttg tttttttgcc tcaaggttcc attgctcaaa ttataacaca tctaaaacaa
     7441 aataaatatg aaatgagcac gattgataaa tatatcttat ttttcttggg tcatcctcaa
     7501 tcaggctgga taaatatagg cacaaaagaa ctcaatagaa tagaattttt acacaaactc
     7561 accatagcta aagcagcatt agaaaccctt actctcatcc ctggagaaac cagtgtgatt
     7621 tttttagagc aagctgcaaa acaattagaa cttgataaaa acacgctttt agccgaattt
     7681 gaaaaacaag ctacatataa agaaggggtt tttcttcctg aaacttacaa aattccaaaa
     7741 ggaatcacag aagcactttt ggttcaagtt ttgctcaaac atgcagaaaa ttcaaataga
     7801 aaaacttcgg agaaaatttt tggcgaatac aatgccaaaa aatggcacca atacatcata
     7861 acagcatcag tcattcaaaa agaagcggct aatgaaagcg aaatgcctat agttgcaagc
     7921 gttatttata accgtataaa aaaaggtatg aagctccaaa tggatggaac cttaaactat
     7981 ggattttatt ctcatacaaa aatcactcct caaagaataa gagaagataa tagctcttat
     8041 aatacttata aatttgaagg tttgcctaaa gaagcagttt gtaatgtctc tttatccgca
     8101 attcgtgctg ctatctttcc tgcaaaaact gattatttat attttgtaag agataaaacc
     8161 acaggggcgc atatttttag caccaatctc aatgatcata ataaagccat tcaatcacaa
     8221 aaaaacaaat aactaaaatt gcaaaaattt atgcaagttg gaacagtatt tgcttgttaa
     8281 tttttgaaat tataaaaagg ataaaaaatg attaacccat tcaaatcaaa agaacttatc
     8341 acaagtgctt tagcgggtag aaatttaaga aatcaactca tcaatgcaaa ccttgcaaat
     8401 gttgacactc ctttttataa agcaagagat attgaatttg aaactgcttt agtaaatcgt
     8461 gcaaatgaaa tctttaaaaa aaatgataat aaagaattac aattagcaat aactgaagaa
     8521 ggacatcaaa aaccttggaa attcccagat cctagcaaat ctactattta tctaagggat
     8581 ggacatttag caagaaatga tgcaaatact gtggatttag atgttgagac aactgaaatg
     8641 agtaaaaata cagtgatgat tacagctctt gatggggtct taagaagaca aagtaatatt
     8701 tttagctcta tacttgatgc aagttctaaa ttaagttaaa ggtaaattat ggcatactta
     8761 agtgattttg atattagcgg atatggttta agtgcgcaac gctttagaat gaatgttatt
     8821 agctccaata tagctaatgc aaacacaaca agaacagctg aaggcggacc ttatcgaaga
     8881 cgcgaagtga tctttaaagc gacagatttt gataagcttt taaacgagca aattaataag
     8941 gacaataact ttttaaaata tgaaaatcct ttaaatgatc caagctcacc tgaagaggca
     9001 aagcctgcta tacaaagcgt tgttgtagat aaagtcgtaa gagatgataa agattttcgt
     9061 atgaaatatg atccttctca tcctgatgct aatgcgcaag gctatgtagc atatccaaat
     9121 gtaaatcctg tcatcgaaat ggcagatttg attgaagcaa caagagctta tcaagctaat
     9181 gttagtgctt ttacaagtgc aaaaaccata gctcaaagtg cgattgattt attaagagga
     9241 taataaaata tgaataatat taatgattta agattaaata ataacatttc aaatgcaaac
     9301 aaaagccaaa attctaatga taaaatcggc gatgaatttg ctaaaatgct taaaaacgaa
     9361 atcgaagatt tagataaaac tcaaaaaact gcagaagctg cgatgacaga tattgcaaca
     9421 ggacaggtaa aagatttaca ccaagcagct attgctatca caaaagctga aagcagtatg
     9481 aaatttatgc tagaggttcg aaataaagct atcagcgctt ataaagaaat cacaagaaca
     9541 caaatttaag ctgtatgcaa gagcataaga aaaatcgtgt ttcaaaagtc gcctttgctt
     9601 actgcatggc gctttttttt atgatcattt ttcttagctc tacctttttt ctcacttcaa
     9661 agcgccatat ccccaacact gaaaaagatc aatactctct tgccttacgc ggaaatatca
     9721 tcactaaaga taattttact atcacaagct caaggcaaat ttatcgcgca gaaattgatt
     9781 taagaagtat caataaggat aaatttgatt tatttttaaa gctttttcaa atatatagtg
     9841 gaattagcga tgatgaaatt gcagatatta aaaaaagaat tcaaaaacag aaaaaacgat
     9901 cctatcattt tatcctttct caaaatttag attctaaaca agcaagctat cttagagatc
     9961 ttgcaaaaaa gctttatata caaggatttt ttaaagcatt taccaataac ctaggaaagg
    10021 ttgaaacaag aggtttaagc attatcgaac atgaagaaga tagaatttat atgtctaaag
    10081 atgctttaac tccagccata ggttatacta aaatggtttt agatcctcaa agcggaattt
    10141 taaaaaatgt tggagtaaaa ggacttgaaa aatactatga cgactgctta agtccactcc
    10201 aaaatgaaaa aattcaaggc ctaaaagata taggtggaaa tataatctta aatttaaact
    10261 cattgcagca aaaaaagatt gatggctgtc ttttatatct taatatatcc ttaaaacttc
    10321 aaaaaagcat tgaaaaagcg attgatggaa gaaat
//
LOCUS       DARAII010000061        10335 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.061, whole genome shotgun sequence.
ACCESSION   DARAII010000061 DARAII010000000
VERSION     DARAII010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10335)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10335)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10335
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.061"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..2210)
                     /locus_tag="SB143_001208"
     CDS             complement(<1..2210)
                     /locus_tag="SB143_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEF9749743.1"
                     /translation="MIQKSLALAEELQGKIEANISNSEKEFHAKMQKLLNNPENKVML
                     IELLDRSFRCKDKRASFELIEHTLNKYGIADFFSAFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHMRKRKDQDNITLNVNLIGEEVLGEAESKYRIQKY
                     EEALKSSYITYISIKITTIFSQINIIDFEYSKDEVVKRLDHLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVSKFDIKAGIVLQAYIPDSYEYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFVLEGDNYKYIN
                     VGIASHNIFEIAYAYTRISEAGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDNNWNVQKELFLKSLEGIKTLDNST
                     HRTQDRNKAPNIVSAYESGMFNNESDTDFILPQNRAWAKVIRAKYENLENYDVMPVIG
                     DLEFDKNTLNILEVKDKIKDRMIGKAYLAGENEIKKALEVAKNSNFKNTSFGEIHAIL
                     AKAANLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFTEFYPHSLKVLREQNKNTQ
                     FSPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDAGI
                     SKDALIFLPSKGSDISKYLLVDEAVKFSILTGGEDTAYAMLKANPTLLLSAETGG"
     gene            complement(2348..3370)
                     /gene="selD"
                     /locus_tag="SB143_001209"
     CDS             complement(2348..3370)
                     /gene="selD"
                     /locus_tag="SB143_001209"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(3320..3322),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEF9749744.1"
                     /translation="MEYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQTSPALLSDIG
                     NNEDASVFQISPELALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCHHELNVLQELLQGANDKVQECGGIIVGGHTIESGELFFGLSVTGKVHPKKFI
                     ANNTAKEGDLILLTKPLGTGILSTALKAQMLEEKHLDRMLESMMGLNYKSSQIALRFG
                     VNAMSDVTGFGFLGHLREMLNDSISFMIFKDKLPYLEGVKEYFDMGLIPGGAYKNLDF
                     MQELYSSLNEEDLLLCDPQTSGGLLISIEEKKALECLKALEDENIKAKIVAKAVAKQD
                     DRFIFS"
     gene            complement(3378..3950)
                     /gene="yedF"
                     /locus_tag="SB143_001210"
     CDS             complement(3378..3950)
                     /gene="yedF"
                     /locus_tag="SB143_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEF9749745.1"
                     /translation="MRIDCRNLECPKPIVETKKALQNLQNNEILEIVLNSVISKNNVL
                     KFLTSLNLHADIEENNNEFYIRVKKQELDFSKASTDEYNVLFLKTDKVGDGKLGENLL
                     VGFLSTLKNVENIPSKILCVNESVFINVDENHRAHLVMKELEKLGVEIISCGACLEFF
                     GKSKELKIGSIGNAYEILNELCGKAKIITL"
     gene            complement(4075..4806)
                     /locus_tag="SB143_001211"
     CDS             complement(4075..4806)
                     /locus_tag="SB143_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEF9749746.1"
                     /translation="MDKNKKILAYMKELLNSNEKLDCGTAFKIAKKFDVAIEEIGKIA
                     DINGIRIDNCELGQFGHLDFEKAKIEVLRKVEPSLDEKRRIFCKDARNIAKEGCGLKS
                     MRSALKAYKIDVKYCQLGCFKEKKGKQFVVRTKTWIENADGDLLFGKGKTELLELIGQ
                     TGSLLHASKLMGINYKKAWMHLQVLQKNSQEILVSSRQGRSKESGTKLTPRAMELMEN
                     YATLQKDIEEYANKRFKELFFKHKK"
     gene            complement(4799..5581)
                     /gene="fdhD"
                     /locus_tag="SB143_001212"
     CDS             complement(4799..5581)
                     /gene="fdhD"
                     /locus_tag="SB143_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEF9749747.1"
                     /translation="MEPLFTTQILKYKGKDLFTCDDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAVGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPQSIEASKITSEAKFNKDEILKQMSEFYTQCDLYEKTGCVHTAKLF
                     VDKDTFFIGEDIAQHNTIDKALGKARLAGVELSKCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARGENINIYSGENRING"
     gene            5734..7974
                     /locus_tag="SB143_001213"
     CDS             5734..7974
                     /locus_tag="SB143_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter domain-containing protein"
                     /protein_id="HEF9749748.1"
                     /translation="MKLSYHTSKVLMSVSISALLSSAALAQEITIADGDGSMENHFET
                     NDGQHFTLKNDYTNGNLTININNTDIPNSIAKEGYEDLATVNINLGSNDLAIKNISHG
                     DISTYVTNYTINAKKTEAIDVIFQSTNGRSIVNGDFNIKGSSAPTEGVLDDIKSSAIL
                     IGDGYGLQGSLEVNGNFTADQSTLFTVGGNKSQNHIQINGKANITNSNFSIGATSFGD
                     LALNNYVFMSASEGFNEDITNSNKASANISKNFESIVGMSNKDLGLDYEVVRAMDIKD
                     FIEYKLSTKDNKLLISGGANKNVDNNKMILENDKKYLELIKTDLEGAKNEEGTNKEKI
                     DEAIAKIDEQIKQIQDMISNAGDQIISNDDYIKNDSSVSASNKDFVSKILDGLELGKD
                     FNAIGSIKFDKAGEQIANDIKDSAKSISNINQASSGINSTINISNDVSIGSRVAMLNN
                     PYGNYATKLSQMRFAANDYRGNYVDNYENSIWGNVIGGTNIIDGDSSALYGATIGMDR
                     KINDDAIIGAYFTYVNAEIKDNLLTQKSDNFQFGAYSNIYISPKVEVNVKAYAQISTT
                     DQDITNRGFNTTNSADFNRKFLGLSANMGYVFDFSDNTLFVKPFAGANYYYAYTPSYK
                     ENGIAGKNVDSASNNSLSLELGTEIRKYMSEESYLFITPKIEQYVMNNGDDFVASLNG
                     VALPSVKSDDKKKTYGQIIIGGNIDISEQFSLNAGIGAKQILAGKTDGKNETYVSGQL
                     GFKYKF"
     gene            complement(9317..10249)
                     /locus_tag="SB143_001214"
     CDS             complement(9317..10249)
                     /locus_tag="SB143_001214"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEF9749749.1"
                     /translation="MKKILITLLSTFVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAIIAVLSAFALHYMVIGPKQFSHDGKKIYAFSLFERIFHF
                     IAAISWVILVPTGFVMMFGATFGGGVFVRVCKNLHAFATILFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKVKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRLSAIIHNFLGIICAVFFGIHIYMAVFAIKGSIHSMVSGYK
                     EEEEVYILHSYWYKELSSKKQIEPSFSYDPNVKI"
BASE COUNT         3603 a         1736 c         1372 g         3624 t
ORIGIN      
        1 ccacccgttt cagcacttaa aagcaaggta ggatttgctt taagcatagc ataagccgta
       61 tcttctccac ctgtaagaat agagaatttc actgcttcat caacaagtaa atatttagaa
      121 atatcgcttc cttttgaagg taaaaaaatt aaagcatctt tgctaattcc tgcatcccaa
      181 aaacatttac aaagcatata gcctgttaaa gttgaaagcg aagaaggctt gtaaattacg
      241 acattgcccg ctgctaatgg tgctgctatg gttccaactg aaatacctat agggaaattc
      301 caaggagcta tggttactcc tataccttta gggctaaatt gagtattttt attttgctct
      361 cttaaaacct ttaaagaatg tggataaaat tcagtaaaat caatagcctc acttacttca
      421 ggatcaattt ctaagaaagt ttttcctact tcaagtgcag ccaaacctat caaatcccca
      481 cgacgctctc tcatcaaatt tgcagcctta gctaaaatag catgaatttc accaaaactt
      541 gtatttttaa aattagaatt tttagctact tcaagagctt ttttgatttc attttcgcct
      601 gctaaataag cttttcctat cattctatct ttgattttat ctttaacttc taaaatattt
      661 aaagtatttt tatcaaattc caaatctccg attacaggca ttacatcata attttctaaa
      721 ttttcatatt tagctcttat gactttagcc catgctctat tttgtggcaa aataaaatcc
      781 gtatcgcttt cgttattaaa cattccactt tcataagcac ttactatatt tggagctttg
      841 tttctatctt gggtgcggtg tgtgctatta tcaagcgttt taattccttc taaagatttt
      901 aagaaaagtt ctttttgcac attccagtta ttatccccaa ctttgagatt gaaaaaatat
      961 ctcatgaaat tatcttcgct tgtattttca tcaaggcgtc ttacaagata agcaatggca
     1021 ttattaaaat gtgcttcatc acaaacaggt gcataaagaa ttaaatcatg cattttagat
     1081 aattcataag aacattgcaa actcatacct tcaagcattt caaaagtgaa agaatcaaga
     1141 gctcctgctt cactgatgcg tgtgtaagca taagcgattt caaagatatt gtggcttgcg
     1201 atacctacat tgatatattt ataattatct ccctctaaaa caaaatctag cattttgttg
     1261 tagttactat ctgtgtctat ttttttataa aaagtaggaa gctcccatcc tctttgactt
     1321 gcgatcgtct cttcgctttc catatttgca ccttttacaa agcgaatttt aataggcttc
     1381 attcctttta aaactctttc ttttgaaaag gcaaaaagtt ttttaaggta ctcataagaa
     1441 tcaggtatgt aagcttgtaa aacaatacct gctttaatat caaatttaga cacactttcc
     1501 ataaaggcag caacggttag ttccaaatct ctaaattctt ccatgtcaag attgataaat
     1561 ttactcacac cctgcttttt ttcttcttct aaggctaaag cataaagatg atcaagtctt
     1621 ttaaccactt catccttgga gtattcaaag tcaataatat taatttgtga aaaaatagta
     1681 gtgattttaa tcgaaatata agtaatatag cttgatttta aagcttcttc atatttttga
     1741 atgcggtatt tgctttctgc ttcgcctaaa acctcttcgc caattaaatt cacatttaaa
     1801 gtgatattat cttgatcttt tcttttgcgc atatgaggtt ctaaaacact aggatttgca
     1861 tccaaaacca tagctttagt atcttctctt aaatgtttta caaaaaatgg cacacttaaa
     1921 ttaggtgcga atttaccaaa atttaaaaag ctaaagagta agaatttctc aaaggcacta
     1981 aaaaaatctg ctataccata cttatttaaa gtatgttcga taagctcaaa acttgctctt
     2041 ttatctttac atctaaaaga acggtcaagc aattcgatca gcatgacttt attttcagga
     2101 ttattaagaa gcttttgcat tttagcatgg aattcttttt cagaatttga aatgtttgct
     2161 tctatttttc cttgcaattc ttcagctaaa gctaaggatt tttgtatcat ttttacatct
     2221 cctaaggata aaataatatt taaaatagaa atgatattat aaataaggta aaaataacat
     2281 tttaaattta aaaaaatgta taaaaaagaa ttaaaaaaag tttttatgag tatatgagta
     2341 acaaaaatta agaaaatata aatctatcgt cttgtttagc tactgctttg gcaacaattt
     2401 tggctttaat attttcatct tctaaagcct taagacattc taaagccttt ttctcttcta
     2461 tagaaattaa aagccctcct gaagtttgag gatcacaaag cagtaaatct tcctcattta
     2521 aactagaata aagctcttgc atgaaatcta aatttttata agctccacca ggaatcaaac
     2581 ccatatcaaa atattctttt acgccctcta aataaggaag tttatcttta aaaatcataa
     2641 atgaaatgct atcatttaac atttctctta aatgtcctaa gaaaccaaag cccgtaacat
     2701 cactcatcgc attaacccca aaacgaagtg caatttggct ggatttataa tttaaaccca
     2761 tcatgctttc aagcatacga tctaaatgtt tttcttctaa catttgagct tttaaagctg
     2821 tacttaaaat acccgtccct agaggcttgg ttaaaagaat caaatcccct tctttagcgg
     2881 tattattagc aataaatttt ttagggtgta cctttcctgt tacactaagt ccaaagaaaa
     2941 gctcaccact ttctatagta tgtccaccca cgataatgcc accacattct tgaaccttgt
     3001 catttgcacc ttgtaataat tcttgcaaga catttaattc atgatggcaa gtatcaaaac
     3061 ccactatatt taaagcatta atcacctctg cacccatagc aaacacatca cttaaggcat
     3121 tggctgcagc aatagcacca aaatgataag cactatctac tataggtgtg atgaaatcaa
     3181 gcgtttgcac taaggctaat tcaggactaa tttgaaaaac acttgcgtct tcattattgc
     3241 cgatatcact gagtaaagct gggcttgttt gcatgaaatt taaaattgtt ttaagaccac
     3301 ccgggcttaa tttcgctgct caacctgctg cttttacaaa gtgtgttaga ttctggtttt
     3361 tgtattccat attttcctta taaagtgatg atttttgcct tgccacaaag ctcatttaaa
     3421 atctcataag cattgccaat gcttcctatc ttaagctcct tgctctttcc aaaaaattct
     3481 aaacaagctc cacagcttat aatctcaaca cctaattttt caagttcttt cattactaaa
     3541 tgagccctat ggttctcatc tacattgata aaaacacttt cattgacaca aagaatttta
     3601 ctcgggatat tttctacatt ttttaaagta cttaaaaaac ctacaagtaa attttctcct
     3661 aatttgccat cgcctacttt gtctgtcttt aaaaataaaa cattgtattc atctgtacta
     3721 gctttggaaa aatcaagttc ttgttttttt actcttatat aaaattcatt attattttct
     3781 tcaatatcag catgcaaatt caaagaagtt aaaaatttca aaacattatt tttagaaata
     3841 acagaattta acacaatttc taaaatttca ttattttgaa gattttggag tgcttttttt
     3901 gtctcaacaa taggcttagg acactcgaga tttctacaat caattctcat tatttctcct
     3961 tcatttaata aacaaaataa taatactttc ttgctttttt tgtctttaaa tcaaggaaat
     4021 atgcaagttt attaaaatta cttgcattta aaattacaaa accaaaccta gcaattattt
     4081 tttatgctta aaaaataatt ctttaaaacg cttattggca tattcttcga tatctttttg
     4141 caaagtagcg taattttcca taagttccat agcccttggt gtaagtttgg tgcctgactc
     4201 tttagagcga ccctgtcttg aacttactaa aatttcttga gaattttttt gtaaaacttg
     4261 taaatgcatc caagcttttt tataatttat ccccataagt tttgaagcat gaagcaaact
     4321 tcctgtttgc cctatgagtt ctaaaagctc ggtttttcct tttccaaaaa gcaaatctcc
     4381 gtctgcattt tctatccaag tcttagtcct aactacaaac tgcttgcctt ttttttcttt
     4441 aaaacaacca agttggcaat attttacatc gattttatat gcttttaaag cagaacgcat
     4501 tgattttaat ccgcaaccct ctttggcaat atttcttgca tctttacaaa aaattctacg
     4561 cttttcatct aagctaggct ctacctttct taaaacttct atttttgctt tttcaaaatc
     4621 aagatggcca aattgcccaa gctcacaatt atcaatgcga attccattga tatctgctat
     4681 tttacctatc tcttctatag ctacatcaaa ttttttagcg attttaaaag ccgttccgca
     4741 atcaagcttt tcattgctat ttaaaagctc tttcatataa gctagtattt ttttattttt
     4801 atccattaat tctattttct ccactataaa tattgatatt ttcacccctt gcaaagccac
     4861 aaagtgttaa atcaaatttt cttgctatca tgacacctaa acaagtagga gctgtgcgtg
     4921 aaacaagaac aggaattttg tgcatcactg ctttagccac catttcagaa ctaagcctac
     4981 cactaaccat taaaaagcat ttgctaagct ctactcccgc aagtcttgcc tttcctagag
     5041 ctttgtctat ggtattgtgc tgggctatat cctcacctat aaaaaaggta tctttatcga
     5101 caaaaagttt ggctgtgtgc acgcaacctg ttttttcata aagatcgcat tgagtataaa
     5161 attcactcat ttgttttaaa atttcatctt tattaaattt tgcctcactt gtaattttac
     5221 ttgcttctat actttgtggg tcaatattgg ctgtatgagc tctaccacaa ccacttatca
     5281 ccacaccttc agcattgagt ttagctaaat tttctttatc aatcttggct ttgatatgca
     5341 cactcatgcc atcatcttta gtttctatgc tttctatatc agacacctta gcaatgatat
     5401 tttcactcat caaatacccc accgccaaag cttgctcatc tacaggagtt gccattaaag
     5461 cgcctacttt ttcatcattg ataaaaattt caagcttgat ttcacgcact aaagtatcat
     5521 cacaagtaaa taaatctttg cctttatatt ttaaaatttg agttgtaaat aagggttcca
     5581 ttgtcatctc ttttgtaatt ataaaattac aaatattata tcacaaaatt taatacttct
     5641 ttatttttaa aatctcattt accttaaacc taaatttata gagggggggg gtataatgtc
     5701 ttttccaaat ttaaatttat aaggagtaat caaatgaaac tttcttatca tacaagtaaa
     5761 gttttaatga gtgttagcat tagtgcttta ttaagcagtg ctgctttagc tcaagaaatt
     5821 actattgctg atggcgatgg tagcatggag aatcattttg aaacaaacga tggacaacat
     5881 tttactttaa aaaatgatta taccaatggt aatctaacca taaatatcaa caatacagat
     5941 atacctaata gtatagcaaa agaaggctat gaagatcttg caacagtaaa tattaattta
     6001 ggctctaatg atcttgctat taaaaatatt tcacatggag atatttctac ctatgtaaca
     6061 aattatacta tcaatgctaa aaaaaccgaa gctatagatg ttatatttca aagtacaaat
     6121 ggaagatcta tcgtaaatgg agattttaac ataaaaggtt catctgctcc cacagagggt
     6181 gttttagatg atataaaatc ttcagccatt ttaatcggtg atggatatgg cctacaagga
     6241 tctcttgaag taaatggaaa ttttacagca gatcaatcta ctctatttac cgtaggtggc
     6301 aacaaaagtc aaaaccacat acaaataaat ggtaaagcaa atatcacaaa ttcaaacttt
     6361 tccataggag caacaagttt tggagactta gctttaaata attatgtttt catgagtgca
     6421 agcgaaggat ttaatgaaga cataacaaat tcaaataaag ctagtgcaaa tataagtaaa
     6481 aattttgaaa gtattgttgg tatgagcaac aaagacttag ggcttgatta tgaagttgta
     6541 agagctatgg atataaaaga ttttattgaa tataaacttt ctactaaaga taataagctt
     6601 ttaattagcg gtggtgcaaa taaaaatgta gataacaaca aaatgattct agaaaatgat
     6661 aaaaaatatc tagaattaat taaaactgat ttagaaggtg ccaaaaatga agaaggtact
     6721 aataaagaaa aaattgatga agctatcgca aaaattgatg agcaaataaa acaaattcaa
     6781 gatatgatta gtaatgctgg agatcaaata atctctaacg atgattacat taaaaacgat
     6841 tctagcgttt cagcttctaa taaagatttt gtttctaaaa ttttagatgg acttgaactc
     6901 ggtaaagact ttaatgcaat aggtagtatt aaatttgaca aagctggaga acaaatagca
     6961 aatgacataa aagattcagc taaatctata tcaaatataa atcaagcttc atcaggtata
     7021 aactcaacta ttaatatttc aaatgatgta tccataggtt ctcgtgtagc tatgttgaat
     7081 aatccttatg gaaattatgc tacaaaatta tctcaaatga gatttgctgc taacgattat
     7141 agaggaaatt atgtagataa ttatgaaaac agcatttggg gtaatgtaat aggtggtaca
     7201 aacatcatag atggagatag cagtgcttta tatggagcta ctataggtat ggatagaaaa
     7261 attaacgatg atgctattat aggtgcttat tttacttatg taaatgctga aataaaagat
     7321 aatcttttaa cacaaaaatc agataatttc caatttggtg cttattctaa catctatata
     7381 agtcctaaag tagaagttaa tgttaaagct tatgctcaaa tttcaacaac agatcaagat
     7441 attacaaata gaggatttaa cactacaaat agtgctgatt ttaatagaaa atttcttggt
     7501 ttaagtgcca acatggggta tgtttttgat tttagcgata ataccttatt tgtcaaacct
     7561 tttgccggag caaattacta ctatgcatac actccaagct acaaagaaaa tggaattgca
     7621 ggaaaaaatg ttgatagtgc tagcaacaac tctctttcgt tggagctagg tactgaaatt
     7681 agaaaatata tgagcgaaga atcatattta tttatcactc caaaaataga acaatatgta
     7741 atgaataacg gagatgattt tgtagcgagt ttaaacggag tagcattacc tagcgtaaaa
     7801 agtgatgaca agaaaaaaac ttatggacaa atcattatag gtggcaatat tgatattagc
     7861 gagcaattta gcttaaatgc aggcattgga gctaaacaaa tattagccgg taaaacagat
     7921 ggtaagaatg aaacttatgt aagtggtcaa ttaggtttta aatataaatt ctaattaatt
     7981 tttaagagac tctaattctt taatatgcta aactaaattt aaccaagaaa gatttaaaat
     8041 cttgaaaagc aaagcaaaag ataaattgct ttgctttttg ttttaaaaat atttgaaaat
     8101 aatttttaga attcatttat tataaataat aaaattactc tttattgtga cttaatataa
     8161 aattttgcaa tttattcttt ttaataagca taggcgataa ctcaaaaaac tcgtattgat
     8221 aatgagaaaa atcaatatta tagtttcttc tctttttaat tttatcttta tttttttaat
     8281 atattcatca ttagaatttt tatccataat gtaaactgca cagcaatttt ctttttctgc
     8341 gcaaaaatat tgcaaataat ttcaaaatcg cctttattct acaaatgaaa atcacaagct
     8401 atattaataa tatttggact aaacgatact atttcaaaat atgaatttgt tatcgtgctt
     8461 taaaaaaaga cataagaact ctagtaactt gtttttgtct actaaataag caatgattaa
     8521 aatcagatct tctgaaaata ctatttattt cgtttgatat taaaatatat tagttactta
     8581 gcttgttatt atttacctta gcttcgtcaa aaaatcaata aaaatatttg tatcaagaaa
     8641 tacttttttt catatgtcat tctctaaaga ttatttttca tttctttaac tattttgctc
     8701 ggataaaaaa ctccatttaa agctttgctt agctaattta aacttttaac ctttgtttag
     8761 tgcttgttct aaagctctaa agatatttat tcttgttgtc atatagtcgc tgatttttag
     8821 tactttagaa tttaattggc tcatctttct tgcctaagtc tttgttttta ttccattatt
     8881 cttactataa attaaagtaa atattatgaa taagtaaaac attgatagtt tagtagtttt
     8941 ctttattctt ggttgggata gattttacat taaaaacctt tggttatttt tggatttact
     9001 agccccattt gagttttcat tcttttgatt gtatattttt tcttaagtta ccaaaaaata
     9061 acttctgctc caaagatatt ttctaatgta taaaaattct tttttaatta ttctactgta
     9121 gatagaaaag atgaaaaaaa ttagcataaa tctaatctat tcatcaagcc tatccgcatt
     9181 aacgagaaaa aaattcatta caaagagtga attttattta tacttttaaa ttatatattt
     9241 aagtaaaaat ttacaaatat tttaaattta aaaacattaa aaaaaattta aaatctctct
     9301 cggataaaga gagattttaa atttttacat taggatcgta agaaaaacta ggttcaattt
     9361 gttttttact gcttaattct ttataccaat agctatgcaa gatataaacc tcttcttctt
     9421 ctttatatcc acttaccata gaatgaatac ttcctttaat ggcaaataca gccatataaa
     9481 tgtgaattcc aaagaatact gcacaaatga ttcctaagaa attatgaata atagctgaaa
     9541 gtcttaaaag ctcaatttgt gttaaaccaa aaagaccttg aatggcagta gaattaaaat
     9601 caaggaaata cataaagccg cctgtaataa tcatcaaaaa tccaccaaat acggcaatat
     9661 aataccaaga tttttgccca aaattaaatt tacccgcagg aacagggcgt tttaccttgc
     9721 ttagataacc acccactatc atcatccatc taatatcata actagcagga agcattcttt
     9781 ttatccacca taaaaacata ggaatgatag aaatgataaa taaaatcgtt gcaaaagcat
     9841 gtaagttttt gcatactctt acaaatacgc cgcctccaaa agttgcacca aacatcatca
     9901 caaaacccgt aggtaccaaa atcacccacg aaatagccgc gataaaatga aaaattcttt
     9961 caaataaaga aaaggcataa attttctttc catcatgaga aaattgtttt ggacctatca
    10021 ccatataatg caaagcaaaa gctgaaagaa ctgcaatgat tgcaatcaaa gctatagtag
    10081 ctatatactc accttgcaaa gttgtccaaa gcttaccaaa agtatcataa tttggaatat
    10141 ttgtaatacg atgaaaatcc caaatttgtg tatcttgtcc cattcgttca ctgccatagg
    10201 caaacaaact tacaaaagtg cttaaaagtg ttatcaatat ttttttcata agcgttcctt
    10261 tcctatgtaa gcaattttcc attctatact ttgcgaagga ttagcaattc cataacccct
    10321 actttgcaat ctgct
//
LOCUS       DARAII010000062         9939 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.062, whole genome shotgun sequence.
ACCESSION   DARAII010000062 DARAII010000000
VERSION     DARAII010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9939
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.062"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..906
                     /gene="purB"
                     /locus_tag="SB143_001215"
     CDS             <1..906
                     /gene="purB"
                     /locus_tag="SB143_001215"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEF9749750.1"
                     /translation="GIHGEPITFGLVLAIWYDEILHAKELLEHAREVISYGKISGAMG
                     NFAHAPLEFEEEVCKNLDLKPAPVSNQVIQRDRYAQVISAIAILASSCEQIAVAIRHF
                     QRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSENITGLCRVLRSFVTPALENVALWHER
                     DISHSSVERFILPDAFVTADFMLMRLTNLIDKLLVYPENMMKNLNLTGGLVFSQRVLL
                     ELPFKGISREEAYKIVQRNAMKVWADLQNGKAAINEKNESLFLLALLADEDLRKSLSE
                     EDIRKCFDYNYYTKNVDAIFARTFK"
     gene            921..3290
                     /locus_tag="SB143_001216"
     CDS             921..3290
                     /locus_tag="SB143_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEF9749751.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTFDAIKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNDYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDVSDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTQDLCDLYGEAFEKRYEEYEKDESIAKEIVEAKELWKKILLN
                     YFETGLPFLCFKDNANKANPNAHVGIIRSSNLCTEIFQNTEPNYYKIKVVFENGDEKH
                     FDEEERVIIDGGYEKPAKKISTLDSFNGNKVYIVEKYKSDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEARIHWG
                     SDEHLNKIDEIMEKISYEAINASSNLAIEKGSYPDFEGSNWSKGIFPIDVASEKAKAL
                     TLREGLFNQSECDWDKLREKVKEDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLETWQYYTPAYELDQRILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNDIYQLAWELGVKSTYYLRSESPDSEKINIADRSIECEGCQ"
     gene            complement(3322..4707)
                     /locus_tag="SB143_001217"
     CDS             complement(3322..4707)
                     /locus_tag="SB143_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEF9749752.1"
                     /translation="MDKQFFQMFLMFSQIQTVAIIAVLFVIFYILKKMRDKKVNFSLR
                     MLFALFIGLGFGFALQYLAQFPDSKEASAIIWYNEAKHWFGFVSSVFVAFIKMLVIPL
                     VGICIIKVIIEIDKNIKISSLLSISLFWILFSTAIAASLGILLAYNFQLGDNFTAYEG
                     MRQIREIQTFSSIILGLIPSNIISVMNKENIIAIVIFAFFVGICAKKVSKKEEYAQAF
                     QTFENFVLVFYNIMMNMTAAVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIILTYIA
                     MFIMFGVHFLFLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNP
                     AVANFVASIGTTTGLNGCAGYFPAMAAIFVAFATHTPIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGDNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKAIDKEIYNS"
     gene            complement(4824..5447)
                     /locus_tag="SB143_001218"
     CDS             complement(4824..5447)
                     /locus_tag="SB143_001218"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEF9749753.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFDKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEGEFKIGD
                     FENASRYLVLCGNEEVDNASIQALENLRLILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQDHQFIFEHCLHKDIH"
     gene            5560..7194
                     /locus_tag="SB143_001219"
     CDS             5560..7194
                     /locus_tag="SB143_001219"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEF9749754.1"
                     /translation="MNKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKAD
                     PYINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVI
                     EKERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIR
                     ALRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKAL
                     DRDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILNPIASILDLKNLKPNME
                     NWDILVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTRVELQWVDSEK
                     LENLESAEAFKNVSGILVAGGFGYRGVEGKIKAINYARENKIPFLGICLGMQLALVEF
                     ARHVLKIEDANSSEFDDKCSNPIVYLIDEFMDASGKKQIRTAKTPLGGTMRLGSYECK
                     VKPNSLLAKVYNNAKNIKERHRHRYEANPKYRKEFEDKGLIVSGESEGLIEAVELNNH
                     PFFLAVQFHPEFTSRLERVNPVICGFIKAAISYEDD"
     gene            7181..8752
                     /gene="recJ"
                     /locus_tag="SB143_001220"
     CDS             7181..8752
                     /gene="recJ"
                     /locus_tag="SB143_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEF9749755.1"
                     /translation="MKTIDKNEIRKILASRFEKDLHTKLCDLPLPCCLKDIYKAANRI
                     KEAIDKNEKIAIVGDYDVDGIISCVIMAEFFDDIGFDYTVRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAAFEAAKLCKEKNIDLIITDHHMPQDTLPDAFAIINPKQKDCDF
                     PDIEICGAQVAWYLIAALKEVCKLKYDMGKFLELLAIAIVADMMELRDLNRALVRRGI
                     ECINKSKRVAFKAIKQYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDLD
                     KASAYLEQIISFNESRKDEEKQLFEDSLSQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNDQRLKGSARSVGKIDILALISKANFILSNYGGHKGAAGLSLDLDS
                     FEKFKTIIKKECMEISQSEFLDTDEILGILDPNEIDFEMLEILESFEPFGHKNPRPFF
                     ILENLYVKNKKFLGKDEKHLKLILTKDNKTIEALFFNFDKEPQLYENISLLGSISKNE
                     FRGLATPQFIIKEIL"
     gene            8838..9884
                     /locus_tag="SB143_001221"
     CDS             8838..9884
                     /locus_tag="SB143_001221"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEF9749756.1"
                     /translation="MKKLLLCVWVFLSIGVCMAEAKPKIAILATGGTIAGSIDSAVAT
                     TGYTAGVVGVDVLIKAVPQIQDLANISGEQVANIDSSNMRDEIWLKLAKKINKLFDEG
                     VDGVVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALAA
                     DKEAKNKGVMVAMNDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNISK
                     AHTKNSPFDVSKLTSLPKVDILYTYSNDGSAIAAKALFDNGTKGIVVAGSGAGSIHED
                     QKNTLKELIKQGLDVVVSSRVAAGRVAVSDADKKLDFISAEDLNPQKARVLLMLALTK
                     TNDPKKIQEYFLKY"
BASE COUNT         3506 a         1421 c         1922 g         3090 t
ORIGIN      
        1 ggaattcatg gagaacctat cacttttggt ttagtgttag ctatttggta tgatgaaatt
       61 ttacatgcaa aagagctttt agagcatgca agagaagtga taagttatgg aaaaattagt
      121 ggtgcaatgg gaaattttgc tcatgctcct ttagaatttg aagaagaagt atgtaaaaat
      181 ttagacctta aacctgcacc tgtttcaaat caagttattc aaagagatcg ttacgcacaa
      241 gtgatttcag ccattgcgat tttggcttca tcgtgcgagc aaattgctgt tgcaataaga
      301 cattttcaaa gaacagaagt atatgaggct gaagagtatt ttagcgtggg gcaaaaagga
      361 agttcggcta tgccacataa aagaaatccg gttttaagtg aaaatatcac agggctttgc
      421 cgtgtgctta gatcctttgt aactcctgct ttagaaaatg tagctttatg gcacgaaaga
      481 gatatatcgc attcaagtgt tgaaagattt atcttgcctg atgcctttgt tacagctgat
      541 tttatgctca tgcgtcttac aaatttgatc gataagcttt tggtttatcc tgaaaatatg
      601 atgaaaaatt taaatcttac aggtggactc gtattttcac aacgcgtttt attagagctt
      661 ccatttaagg gcattagccg tgaagaagct tataaaatag tccaaagaaa tgcgatgaaa
      721 gtttgggctg atttgcaaaa tggcaaagct gctatcaatg aaaaaaatga aagcttattt
      781 ttacttgcac ttttagctga tgaggatttg agaaaaagct tgagtgaaga ggatataaga
      841 aaatgttttg attataatta ttacacaaaa aatgttgatg caatctttgc aagaactttt
      901 aaataaggac aaggaataca atgaaagtta ttaaaagaaa tggtcgcaca gaagaattag
      961 acgtttctaa gatcaaaaaa tgcacctttg atgctataaa agatttagaa ggcgttaatc
     1021 taagcgagct cgagcttgat gctaaaattc aatttcgaga tggaatttca actgaagaaa
     1081 ttcaaaaaac attgattaaa actgctgtag ataaaatcga tattgattgt ccaaactgga
     1141 cctttgtcgc agctagactt tttttgtttg acttgtataa aaaagtgaat ggaatgaatc
     1201 gctataatca tttgcgtgag tattttgaaa agggcgaaaa ggaaggtaga attttacttg
     1261 ggcttaaaga aaaatatgat ttagatgatt taaatgatta tattaagcct gaacgcgata
     1321 tgcaatttac ttatcttggc attaaaactc tatatgatag atatttgatt aaagatagca
     1381 agggtatgcc tatagagctt cctcagcaaa tgtttatggc tattgctatg tttttagcac
     1441 agaatgaatt taatcctcaa gaatgggcaa agaaatttta tgatctcatc tctaaatttg
     1501 aactcatgct tgcaactcct actttatcaa acgcaagaac aacacgccat cagcttagct
     1561 cttgttatat aggctcaact cctgacaata tcgagggaat ttttgattct taccaagaaa
     1621 tggcattatt gtctaaattt ggtggaggta taggctggga ttggtctaaa gttcgcgcaa
     1681 tgggtggaag catagatggg cataaaaacg ctgcaggggg tatcattcct tttttaaaaa
     1741 tcaccaatga tatagctgtg gctgtagatc agcttggcac aagaaagggt gcgatcgctg
     1801 tttatatcga accttggcat atggatgtaa gtgattttat cgatttgcgt aaaaattcag
     1861 gcgaagaaag acgccgtgcg cacgagcttt tccctgcttt gtggattaac gatcttttta
     1921 tgaaaagagt gagagcaaac gataaatgga ctctttttga tcctgcagat acacaagatt
     1981 tgtgtgattt atatggagaa gcttttgaaa agcgttatga agaatacgaa aaagatgaaa
     2041 gtatagctaa agaaatagta gaggctaaag agctttggaa aaagattttg cttaattatt
     2101 ttgaaacagg cttgcctttt ttatgcttta aagataatgc aaataaagcc aatccaaatg
     2161 cgcatgtagg gattatcaga agttcaaatt tatgtacaga aatttttcaa aatacagagc
     2221 caaattatta taagatcaaa gttgtatttg aaaatggtga tgaaaaacat tttgatgaag
     2281 aagaacgcgt tattatcgat ggaggatatg aaaaacctgc taagaaaatt tcaacgcttg
     2341 atagttttaa tggaaacaag gtttatatcg tagaaaaata caaaagcgat ggaaaaactg
     2401 cagtttgtaa tctagccagt ataaatctta gcaaagtata tactaaagaa gatatagaac
     2461 gcgtggtgcc aactgctatt cgtatgcttg ataatgttat tgatttaaac ttttaccctc
     2521 atagaaaagt aaaggatacc aatttaaaat ctcgcgccat aggacttggc gttatgggtg
     2581 aggcacaaat gctcgctgag gcaagaattc attggggtag tgatgagcat ttaaataaaa
     2641 ttgatgaaat tatggaaaaa attagctacg aagctattaa tgcaagctca aatttagcga
     2701 tagaaaaagg ctcttaccct gattttgaag gatcaaattg gagtaagggg atttttccta
     2761 ttgatgtagc aagtgaaaaa gccaaagctt taaccctaag agaagggttg tttaatcaaa
     2821 gcgaatgtga ttgggataag cttagggaaa aagtaaaaga agatggtatg agaaatggtt
     2881 atttgatggc cattgctcct acttcttcaa tttctatttt ggtaggaaca acacaaacta
     2941 tcgaacctgt ttataagcgt aagtggtttg agcaaaattt aagcggtatg atacctgttg
     3001 tagtgcctaa tttaagtctt gaaacttggc aatattatac cccagcttac gaacttgatc
     3061 aaagaattct tgttaaagct gcagcagtgc gtggaaaatg gatagatcaa gggcaaagtt
     3121 taaatatctt tttatcactc gataaagcaa gcgggggtta cttaaatgat atatatcaat
     3181 tagcttggga gcttggggta aaatcgactt attatctaag aagtgaaagc cctgatagcg
     3241 aaaagataaa tattgctgat cgtagcatag aatgtgaagg ttgccaataa agatttaaac
     3301 ctatattagg tttaaatctt tttaagaatt ataaatttct ttatctatgg cttttaaatt
     3361 ttttgcagtg caaagcgctg aggtcatagc ccctgaaaca ttactggctg ttcttgccat
     3421 atcaatgata ggatcaatag ctaaaataag gctaagcata acaaaattat ccccaaatcc
     3481 aattcctgcg agcataatag aagctgccat agttgcactt ccaggaactc cagcaatacc
     3541 taaagatcca ataactgcta ctaatactat catcaaagca aaagtaaaat ctataggcgt
     3601 gtgtgtagca aatgccacaa agattgctgc catagctggg aaataacccg cgcaaccatt
     3661 aagtcccgtt gttgttccta tagaggcaac aaagttagcc acggcaggat ttactccaaa
     3721 tttgttttgc aaagttgaag tcgtcatcgg taaagtccct aaagaagatc ttgaactgaa
     3781 tgcaaacagc catacaggaa aagctttttt tgcgtatttt ataggattta gtccttgaga
     3841 agcaagaaat aaaaaatgca caccaaacat tataaacatt gctatatagg taagaatgat
     3901 aaaaagtcct gcagttttga ttgcttcaaa accattgctt agtaaaacat ttgccatcat
     3961 acaaactaca gcataaggca taaatcgaat cactgcagcc gtcatattca tcataatatt
     4021 ataaaaaact aagacaaaat tttcaaaagt ttgaaaagct tgtgcatatt cttctttttt
     4081 tgaaactttt tttgcgcaaa ttcccacaaa aaaagcaaaa attacaatgg ctatgatatt
     4141 ttctttattc ataacagaaa tgatattgct aggaattaaa cctaaaataa tacttgaaaa
     4201 agtttgaatt tcgcgaattt gtctcattcc ttcataagcg gtaaaattat cacctaattg
     4261 aaaattgtaa gccaataata tacccaaaga agcagctata gcagtactaa aaagtatcca
     4321 aaagaggctt atgctaagca aggaagaaat ttttatattt ttatcaattt ctataatcac
     4381 tttaatgata caaataccca caagcggaat aactagcatt tttataaaag ctacaaaaac
     4441 agagcttaca aaaccaaacc aatgttttgc ttcattgtac caaatgatag cacttgcttc
     4501 tttgctatct ggaaattgag ctagatattg caaagcaaaa ccaaagccta ggcctataaa
     4561 aagagcaaaa agcatacgaa gggagaaatt taccttttta tctcgcattt ttttaagaat
     4621 gtaaaaaatt acaaaaagca cagcaataat agctacagtt tgtatttgcg agaacattaa
     4681 aaacatttga aaaaattgtt tatccataaa aagtccttta agaaactata tcaagtatga
     4741 aatatattta aagtatgtcc ataaaatctt gatcttatgg atgataccat aaaaatatta
     4801 taaataagta aaattagtat gatttaatga atatctttat gcaaacaatg ctcaaaaata
     4861 aattgatgat cttgtggcaa ggcttcaaat aaagcattag ccaaatttct aatctcccaa
     4921 agagcagatt ttgagctacg caaagaaata aaattttgca aacttctagc attgattgtt
     4981 aaagtaagtt cggttttata actctcaggt aagcagtatt tggctatatc caagcttata
     5041 cttttttgta aaataaggcg taaattttct aaagcttgaa tgctagcatt atcaacttct
     5101 tcattgccac aaaggacaag ataacggctt gcattttcaa aatctcctat tttaaattca
     5161 ccctcattgc gaagttcttt tagagtgtag cgcgtgcttt taacgctagg acttgtatgg
     5221 cgatgtctag caacttcttg taagcaagcc cttgaaattc cttgaatata aaaagtataa
     5281 tttaaatgct ctaaggttga ggcatgttta aatttatttc ctacgcgatc gatgagttct
     5341 ttatcttttt ctccaccaca atctccttta tcaaaacttt gccaacaagt tcttgttgca
     5401 tgcgaacata cagaaagagg ggtatgaaaa agtaaagtga tttgcataaa ttttccttga
     5461 taaatttttt tataattctt acatttttta cttaaaattc taatgaaata aaaagtttta
     5521 tcgagttata attagacaaa aaattaaggc ttattaataa tgaataaaca aaccaaatat
     5581 atttttgtta caggaggagt gttaagctcc ttaggcaaag gaatagcagc tgcaagtatt
     5641 gcgactttat tgaaaaattc aggacttaaa gtaagtattt taaaagcaga tccttatatc
     5701 aatgtcgatc ctggcaccat gagtccattt gaacacggag aagtttttgt tacagatgat
     5761 ggagcagaaa ctgatcttga tttagggcat tatgagcgtt ttttagacga gagcttatca
     5821 caagataaca attttaccac agggcgcgtt tatcaaagcg tgatcgaaaa agaaagacgc
     5881 ggagaatatc ttggtaaaac cattcaagtt attccgcata tcgtaggaga gattaaagat
     5941 cgtattaaaa aagcaggaga aggcaaggat atcttaatcg tagagatagg tggaactgtc
     6001 ggagatatag aaggtttacc gtttttagaa gctattcgtg ctttgcgttt agaagtgggt
     6061 aaaaataatg ctatgaatat tcatttaacc ctagtgcctt ttattaaggc tgcaggggag
     6121 ttaaaaacca aaccaaccca acacagcgta ggtgaactaa gacgcatagg cattagtcct
     6181 gatatgatta tttgccgtag tgaaaaagcg ttagatagag atttaaaaga taaaatcgct
     6241 atttcatgcg gggtggaaaa aaattgcgtg atagaaagtg ttgatgcagc aagtatttat
     6301 caaattccac taaatttctt aaagcaagat attttaaatc ctatcgcttc tattttggat
     6361 ttgaaaaatt taaaaccaaa catggaaaac tgggatatcc tagtaaaaag agttatagct
     6421 ccaagtaatg aagtcaaaat cgcttttgtg ggtaaatatg tagatctaaa agaaagctat
     6481 aagagtctta cagaagctat cattcatgca ggtgcagcgc ttgatactag agtagagctt
     6541 caatgggtag atagtgaaaa gcttgaaaat ttagaaagtg ctgaagcatt taaaaatgtg
     6601 agtggaattt tggttgcagg gggctttggt taccgcggag tagagggtaa aataaaggct
     6661 atcaattacg caagagaaaa taaaattcca tttttgggaa tttgtttggg tatgcagctt
     6721 gcattggtag aatttgctag acatgtgtta aaaattgaag atgcaaattc gagtgaattt
     6781 gatgataaat gttccaatcc tatcgtttat ctcatcgatg aatttatgga tgcgagcggt
     6841 aaaaaacaaa ttcgtactgc taaaacacct ttaggtggaa ctatgcgttt gggatcttat
     6901 gagtgtaaag tcaagcctaa ctccctttta gctaaggttt ataataatgc aaaaaatatc
     6961 aaagaacgcc accgccaccg ctatgaagcc aatccaaaat atcgtaaaga atttgaagat
     7021 aagggcttga tagtaagtgg agagagtgaa gggcttatag aagctgtgga gttaaacaat
     7081 catcctttct ttttagctgt ccaatttcac cctgaattta cctcaagatt agagcgtgta
     7141 aatcctgtga tttgtggttt tatcaaggcg gctataagct atgaagacga ttgataaaaa
     7201 tgaaattaga aaaattctag cttctcgttt cgaaaaagat ttacatacca aactttgcga
     7261 tttacctttg ccttgctgct taaaagatat ttacaaggcg gcaaatcgca ttaaagaagc
     7321 tatagataaa aatgaaaaga tcgctatagt gggtgattat gatgttgatg ggattatctc
     7381 ttgtgttatt atggcagaat tttttgatga tataggtttt gattatacag taagaattcc
     7441 caaccgcttt aaagatggat acggtttaaa tgctgaaatt atcaatgaac ttgatgtaaa
     7501 tttgattatt acagtggata atggtatagc agcctttgaa gcagccaagc tttgtaaaga
     7561 aaaaaatatt gatttaatta taactgatca tcatatgcct caagatactt tacccgatgc
     7621 ctttgcgatt atcaatccta agcaaaaaga ttgtgatttt ccagatattg aaatttgcgg
     7681 agcgcaagtg gcttggtatt taatagctgc tttaaaagag gtttgtaaat taaaatacga
     7741 tatgggtaaa tttttagaac ttctagctat tgccattgtt gcagatatga tggaattaag
     7801 agatttaaat agagccttgg ttagacgagg gattgagtgt attaacaaat ccaaaagagt
     7861 tgcttttaag gcgattaagc aatattatca aaaagataaa tttgcactcg ataatatagg
     7921 atttttaatc gctcctctta tcaatagtgc tggaagaatg gatgatgcaa gcatttctta
     7981 tgaattttta catacaaagg acttggataa agcttcggct tatttagaac aaatcattag
     8041 ctttaatgaa agccgtaaag atgaggaaaa acagcttttt gaagatagtt taagtcaaat
     8101 tgatgaaaat gattcttgta ttgttgtatc gggtttaaat tggcatgagg gagttttagg
     8161 gatagtagca agccgtttag caaaacattt caataaaccc gcttttgtat tttcacaaaa
     8221 cgatcagcgc ttaaaaggaa gtgcaagaag tgttggaaaa atcgatattt tagctttgat
     8281 ttctaaggca aatttcatat tgagtaatta tggcgggcat aagggtgctg caggtcttag
     8341 tttagatctt gattcttttg aaaaatttaa aaccataata aaaaaagaat gtatggaaat
     8401 ttctcaaagc gaatttttag acacagatga gattttaggt attttagatc ctaatgaaat
     8461 cgattttgaa atgcttgaaa ttttagaatc tttcgagcct tttgggcata aaaatccgcg
     8521 tccttttttt attttggaaa atctttatgt taaaaataaa aaatttttag gaaaagatga
     8581 aaagcatcta aaactcatac tcacaaaaga taataaaacc atagaagctt tattttttaa
     8641 ttttgacaaa gaaccccaat tgtatgaaaa tattagtttg cttggaagta tttctaagaa
     8701 tgaatttaga ggattggcaa ctccacaatt tattattaaa gaaattttgt aaaaatttat
     8761 aaaattttta tttaatatgt attaatatta tataagtttc atcaatgaaa cttaatttta
     8821 ataaataagg gggctttgtg aaaaagttac ttttgtgtgt atgggtattt ttatctatag
     8881 gagtatgtat ggcagaagcc aaaccaaaaa ttgctatttt ggcaacgggc ggaactatag
     8941 caggttctat tgatagtgct gtggctacta caggctatac agcaggtgtt gtgggtgtag
     9001 atgttttaat caaagcagtg ccacaaattc aagatttggc taatatcagc ggggaacaag
     9061 tagcaaatat tgacagctct aatatgcgtg atgaaatttg gttaaagctt gctaaaaaaa
     9121 tcaataagct ttttgatgag ggtgtagatg gtgtagtcat tactcacggt actgatacca
     9181 tggaagaaac cgcttatttt ttaaatttga ccattaaaag tgataagcct gtagttttag
     9241 ttggtgctat gcgtccatca actgctataa gtgccgatgg cccaaaaaat ctttacaatg
     9301 ctgtagcatt agctgccgat aaagaagcta aaaataaagg cgttatggtg gctatgaatg
     9361 ataaaatttt aagtgctagg ggcgtggtaa aaacccatag tttaaatgtt gatgcttttt
     9421 cttctcctga ttttggagat ttgggctata tagtagatgg aaaagttttc ttctataata
     9481 acataagcaa agcacacaca aaaaatagcc cttttgatgt aagtaaactc acaagcttac
     9541 caaaggtaga tatactttat acttactcaa atgatggtag cgctattgct gcaaaagctt
     9601 tatttgacaa tggaaccaaa ggtattgttg tagcaggaag tggcgcagga agcatacatg
     9661 aagatcaaaa aaatacttta aaagaactca tcaaacaagg gcttgatgtt gttgtaagtt
     9721 caagggttgc agcaggacgc gttgcggtga gtgatgcgga taagaaattg gattttatca
     9781 gtgctgaaga tttaaatcca caaaaagcta gagttctttt gatgctagct cttacaaaaa
     9841 caaatgatcc taaaaaaatc caagaatact ttttaaaata ctgaatttag gcatttctaa
     9901 aagtttagag aggatattta tcttctctaa attcagtat
//
LOCUS       DARAII010000063         9890 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.063, whole genome shotgun sequence.
ACCESSION   DARAII010000063 DARAII010000000
VERSION     DARAII010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9890
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.063"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..989)
                     /locus_tag="SB143_001222"
     CDS             complement(<1..989)
                     /locus_tag="SB143_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEF9749757.1"
                     /translation="MKSVKIKVSLIANLIAIVCLIFLGIITFIFVKDEVFNQVVKSES
                     NYVRTAKNSMEAFKARNTAALESLAKNILKLPYEQISNQEALMRYVGKDLKVFRDAGG
                     FLAVYIAQPDGELVVTDPDSDEKGLNFGIYGKADNYDARTRDYFKGAVKANGLYVTPS
                     YLDLTTNLPCFTYATPLYKEGKFIGVLAIDILVKDLQREFENLPGRTFVFDSENSVFV
                     STDKELLKPGYDVSPVANIAKDKKDYEPFRYARPLDGTQRFGVCAKVLGEYTACVGEP
                     IDYIEEPVFKIAYIQIAIVIITSIISVLLLYFIVSRYLSPLAAIQTGLTSFFD"
     gene            1196..2050
                     /locus_tag="SB143_001223"
     CDS             1196..2050
                     /locus_tag="SB143_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEF9749758.1"
                     /translation="MKKIFLLFIFLGLFNSFLCAKTLQPSENLNLPLISVSIAPQAFF
                     VKKIAGDTLNINILSTNTHKPKSKSNPMKKLEKSELYFTIGLEFEKKLTDKLEQKFPK
                     VKIIDMQENISLAKASSSDSEEILDPFTWLDPILVQNIALNTYNALVQKYPQNKSLYK
                     HNLDKFLTELDVLNLQISSKLQKVKNKEFITYHPAWSYFAKRYDLVQNHIEFLGKKLK
                     NKDIKNLGALIKEKNIKVIFVQTRFPEKTAKTLEKEYNVKIYKIDYLSYDWENELLKT
                     ANAFYENL"
     gene            2063..2917
                     /locus_tag="SB143_001224"
     CDS             2063..2917
                     /locus_tag="SB143_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEF9749759.1"
                     /translation="MLFFEISNINYAYNNETILKNINLSYDSKDFLSIIGPNGAGKST
                     LVKLILGLLKTKKTISFHGIKKNEIGYVPQHTLANPNFCPRVIEIVLMGLVNKKIFGF
                     YSKKDKNKALEALASVGMQDFWDRKINELSGGQKQRVFIARALVDECKMLILDEPTAS
                     VDSKSAIQIFELLSSLHEKGIGILLICHDINLVLAYSDKIAYLNKELFLHTNTKEKDK
                     SVFLKHLYENHSHFCDVEMSLNSCFCDEENCEKKKICEQEFARRNLKKSNFKKENFCL
                     KFSKESHV"
     gene            2910..3716
                     /locus_tag="SB143_001225"
     CDS             2910..3716
                     /locus_tag="SB143_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEF9749760.1"
                     /translation="MFEILNFTFFQNALLAAVLVSIACGVVGTLVMINRLFSIAGGIT
                     HGAFGGIGIAFYFSLPILISTGIFTLFLAFLVAFLSKRYEHRSDSIVAVIWAFGMAFG
                     IILIDLSPGYSTDLMAYLFGNILAVGMQDLWLMAIVDGVVIVLMLLFYRQFEALSFDV
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGIILIMALLSIPSFIAENFTKKLGLI
                     MILASVLSMIFCILGLIISYYFNLSSGACIIAVACFGFLIHLLAKFLLKR"
     gene            complement(3705..5078)
                     /locus_tag="SB143_001226"
     CDS             complement(3705..5078)
                     /locus_tag="SB143_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEF9749761.1"
                     /translation="MMGKINQKMINNNTFSIIEHQAFSKEDLQGIFKEKAKKFYQELE
                     DFAKNNENFLGFKNKNTLTAKNYVGIIQTKSGVLEILPKCTNLDSYKDKECKLSTISK
                     EKLLKNYILNQISQAKTSENFYGEDFAFNPKTLLINMLKTLKNSPFKKSQISSLQISK
                     MPLLEVFIAMFLDELDGVYKKGLKKDYISIEENRNFLKGKLQFSQHLKQNLVHKERFF
                     TQSDEFMLDIAPNRLIKSTLNLLKSKTTHHKFKIIKALEMFDEVGFSTNYEKDFTYKI
                     SRHFDYYENLLSWCKIFLQNQTFAPYKGKNEAFALLFPMEKLFEDYVAHMLKKANPTQ
                     NIKTQSSGKYLISKKGEKCFMLKPDLYIENETILDTKWKIPDSNEDKKHGIAQSDLYQ
                     MFAYACKFKIHDIKLIYPLCERTMSLQNTIKELEFNANEHLAFLNDNSPLKTNIKVQV
                     IFTPLPF"
     gene            complement(5041..7133)
                     /locus_tag="SB143_001227"
                     /pseudo
     CDS             complement(5041..7133)
                     /locus_tag="SB143_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830163.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
     gene            complement(7145..7432)
                     /locus_tag="SB143_001228"
     CDS             complement(7145..7432)
                     /locus_tag="SB143_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749762.1"
                     /translation="MLEDKYDWKISKADQNGNVYYYFPKDEDEFKEAVVKNGGMSVYI
                     YQEGELIDEFHAKSQGYRWKTPIFTYIKNMNKDREKFRRYYKNCKFFAIVD"
     gene            complement(7506..7949)
                     /gene="rimP"
                     /locus_tag="SB143_001229"
     CDS             complement(7506..7949)
                     /gene="rimP"
                     /locus_tag="SB143_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEF9749763.1"
                     /translation="MNLEALCKEVNLELYDSELTSENGKKIYRVYVMKPLDEKGERRG
                     VNLDDCARLSEILSPIFDVEPPVSGEYFLEVSSAGLERKLSKIEHFAKSINELVKITT
                     GEKEKIEAKIISVEDENITLENLENQEKTTLKFSDIKKARTFIQW"
     gene            complement(7939..8301)
                     /gene="rbfA"
                     /locus_tag="SB143_001230"
     CDS             complement(7939..8301)
                     /gene="rbfA"
                     /locus_tag="SB143_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEF9749764.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            complement(8298..>9890)
                     /gene="infB"
                     /locus_tag="SB143_001231"
     CDS             complement(8298..>9890)
                     /gene="infB"
                     /locus_tag="SB143_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEF9749765.1"
                     /translation="IEINIINEADEFDYVKDYEEEVDEKDLVSRAPVITIMGHVDHGK
                     TSLLDYIRKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASIT
                     DIVIIVVAADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIM
                     PVEWGGSYEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGR
                     GAVATIIVQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVAD
                     AGEILIAVKSDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILK
                     ADVQGSLEALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPT
                     GEIKERAKDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKI
                     GQIAGCMVTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEG
                     CDDMRVGDYIESYKEVEEQASL"
BASE COUNT         3124 a         1737 c         1307 g         3722 t
ORIGIN      
        1 aaatcaaaga atgaagttaa acctgtttgg atagctgcaa gtggggagag atagcgtgat
       61 acaataaaat aaagtaaaag aacgctaata atacttgtaa taattactat agcaatttgt
      121 atataagcaa ttttaaacac aggctcttct atataatcaa taggttctcc tacacaagct
      181 gtatattctc ctaacacctt agcacataca ccaaatcttt gagttccatc aagtggtctt
      241 gcataacgga aaggctcata gtctttttta tctttagcga tattcgcaac agggctaaca
      301 tcataacctg gttttaaaag ctctttatca gtagaaacga aaactgaatt ttcgctatca
      361 aacacaaaag ttcttcctgg taagttttca aattctcttt gcagatcctt taccaaaata
      421 tcaattgcta aaactccgat aaattttcct tctttataaa gcggtgtagc ataagtaaaa
      481 caaggtaggt tagtagttaa atcaagataa gaaggagtta catacaagcc atttgctttt
      541 acagctcctt taaaataatc ccttgttcta gcatcataat tgtctgcttt accataaatt
      601 ccgaaattta aacctttttc atcagaatca ggatctgtaa caacaagttc accatcaggc
      661 tgagcaatat aaactgctaa aaaccctcca gcatctctaa acacctttaa atccttacct
      721 acataacgca ttaaagcttc ttgattgctg atttgttcat aaggaagttt taaaatattt
      781 ttagccaagc tttcaagagc tgcggtattt cttgctttaa aagcctccat agaattttta
      841 gcagttctta cataattact ttcagactta accacttgat taaaaacctc atccttaaca
      901 aagataaatg ttataatccc taaaaaaatt agacacacaa ttgctatcaa atttgcaata
      961 agtgagactt taattttgac acttttcaca gattttacac ctttctttaa aaaattttaa
     1021 aagagaattt ttgatgttgc aattataaat aagcaaactt aaacttaaat taaaaaatat
     1081 accctatgaa acaataattt catatagatg tgctataaaa atttagaaat tctaatttat
     1141 aaacttaata ttgttataat tttttaaaat ttcattctct ttaggatata aaataatgaa
     1201 aaaaatattc cttcttttta tatttttagg actttttaat tcctttcttt gcgctaaaac
     1261 cttacaacca agtgaaaatc taaatttacc tttaatcagc gtaagcatag ccccacaagc
     1321 tttttttgtt aaaaaaatag caggtgatac tctaaatata aacatcttat ccacaaatac
     1381 acacaagcca aaatccaaat caaaccctat gaaaaagctt gaaaaaagtg agctttactt
     1441 taccataggc ttagaatttg aaaagaaatt aacagataaa ctagaacaaa aatttccaaa
     1501 agttaaaatc atagacatgc aagaaaatat ttccctagct aaagctagtt ctagtgactc
     1561 tgaagaaatt ttagatcctt ttacttggct tgatcccatt ttagttcaaa acatagcctt
     1621 aaatacctac aatgctctag ttcaaaaata tcctcaaaac aaaagcttat acaagcataa
     1681 tttagataaa tttttaacag agttagatgt cttaaattta cagatctctt caaaattaca
     1741 aaaagtaaaa aataaagaat ttataacata tcatcccgct tggtcatatt ttgccaagcg
     1801 ttatgatctt gtgcaaaatc atatagaatt tttaggaaaa aaactaaaaa ataaagatat
     1861 aaaaaatttg ggtgcgttga ttaaagaaaa aaatattaaa gttatttttg tacagactcg
     1921 ttttcctgaa aaaacagcaa aaactttaga aaaagaatac aatgtaaaaa tttacaagat
     1981 agattattta tcttatgatt gggaaaatga acttttaaaa acagcaaatg ctttttatga
     2041 aaatttatag ttaggttttt taatgctttt ttttgaaata tcaaatatta attacgctta
     2101 caataacgaa acaatcttaa aaaatatcaa cttaagctat gatagtaaag attttctttc
     2161 tatcatcggc cctaatggtg cgggaaaatc tacgcttgta aaactcatcc tagggctttt
     2221 aaagactaaa aaaactatca gttttcatgg gattaaaaaa aatgaaatcg gctatgtccc
     2281 tcaacacact ttagcaaacc ctaacttttg cccaagggtt atagaaatcg ttttaatggg
     2341 acttgtcaat aaaaaaattt ttggttttta tagtaaaaaa gataaaaaca aagccttaga
     2401 agctctagca agtgtaggta tgcaggattt ttgggataga aaaatcaatg aattaagcgg
     2461 aggtcaaaaa caacgcgttt ttattgctag agctttagtc gatgaatgta aaatgctgat
     2521 cttagatgag cctacagcaa gcgttgatag caaatccgcg attcaaattt ttgaactttt
     2581 gagctctttg catgaaaagg gcataggaat tttactcatt tgccacgata tcaatctcgt
     2641 gcttgcttat agtgataaaa tcgcgtattt aaacaaagaa ctctttttgc ataccaatac
     2701 caaagaaaaa gacaaaagcg tatttttaaa acacctttat gaaaatcatt cgcatttttg
     2761 cgatgtagaa atgagtttaa attcttgctt ttgcgatgaa gaaaattgtg agaagaaaaa
     2821 aatttgtgaa caagaatttg caagaagaaa tttaaaaaaa tcaaatttta aaaaagaaaa
     2881 tttttgtttg aaattttcaa aggaaagcca tgtttgaaat tttaaatttc accttttttc
     2941 aaaatgcttt attggctgcg gttttagtca gcattgcttg tggagtcgta ggtacgcttg
     3001 tgatgataaa tcgactcttt tccatagcag gaggcatcac gcatggggct tttgggggta
     3061 ttggtatagc attttatttt tctttgccta tattgatcag cacaggtatt ttcacgctct
     3121 ttttagcctt tttggtagca tttttatcga agcgttatga gcacagaagc gatagcatag
     3181 tcgctgtgat ttgggctttt gggatggctt ttgggatcat acttatagat ttaagtccag
     3241 gttatagcac ggatttgatg gcttatcttt ttggaaatat tttagcagta ggaatgcaag
     3301 atctatggct gatggcgata gtagatgggg tggtgattgt tttaatgctt ttattttata
     3361 gacaatttga agctttaagc tttgatgtcg aatttgcaaa agtgcgaggg ataaatacaa
     3421 gcttttttca ttatctttta atcgcactta tggcattttg catagtgatt tctatacgcc
     3481 ttgtggggat tattttgatc atggctttac ttagcatacc tagctttata gctgaaaatt
     3541 ttacaaaaaa actaggttta ataatgattt tagcaagtgt attgagtatg attttttgca
     3601 ttttagggct tataataagc tattatttta atctctcaag cggtgcttgt atcatagctg
     3661 tagcttgctt tggctttttg atacacttgc tagcaaagtt tttactaaaa aggtaaaggt
     3721 gtaaaaatca cttgcacttt tatatttgtt ttcaaagggc tattatcatt taaaaatgcc
     3781 aaatgctcat ttgcattgaa ttctaattct tttattgtat tttgcaaact catcgttctt
     3841 tcacataaag gatagatcaa tttaatatca tgaattttaa atttacaagc ataagcaaac
     3901 atttgataca aatcactttg cgctatgcca tgctttttat cttcattgct atctggaatt
     3961 ttccacttgg tatctaaaat cgtttcattt tctatataca aatcaggctt taacataaag
     4021 catttttcac ccttttttga gatcaggtat tttccgctgc tttgagtttt gatattttga
     4081 gtcggatttg ctttttttag catatgagct acataatctt caaaaagttt ttccatagga
     4141 aaaagcaagg caaaagcttc atttttgccc ttataaggtg caaaagtttg attttgcaaa
     4201 aagatcttac accaagaaag tagattttca taataatcaa aatgtcttga aattttataa
     4261 gtgaaatctt tttcataatt tgtagaaaat cccacctcat caaacatttc caaagctttg
     4321 atgattttaa atttatggtg agtggttttg gattttaaaa gattgagagt ggattttata
     4381 aggcgattgg gcgcaatatc gagcataaat tcatcacttt gagtgaaaaa tctttcttta
     4441 tgaactaaat tttgttttaa atgttggcta aattgcaatt ttcctttaag aaaatttcta
     4501 ttttcttcaa tgcttatata atcctttttc aaaccctttt tataaacccc atccaattcg
     4561 tccaaaaaca ttgcgataaa tacctctagc aaaggcattt tagaaatttg caaagatgaa
     4621 atttgggatt ttttaaaagg agaatttttt aaggttttta gcatattgat taaaagggtt
     4681 ttgggattga aagcaaaatc ctctccataa aaattctcac tggttttagc ttgacttatt
     4741 tgatttaaaa tataattttt tagtagtttt tctttcgaga tagtagataa tttgcactct
     4801 ttatctttat aactgtccaa atttgtacat tttggtaaaa tttctaaaac tccacttttg
     4861 gtttggataa tgcctacata atttttagct gttagggtgt ttttgttttt aaagcctaga
     4921 aaattttcat tatttttagc aaagtcttct agctcttgat agaatttttt agccttttct
     4981 ttgaaaattc cttgcaaatc ttctttagaa aaagcttggt gctcgatgat ggaaaaggtg
     5041 ttattgttta tcattttttg attgattttc cccatcatta taaatagctt gataagtttt
     5101 tatatcgttc caaattttat tatcaaatga agcaatatta taaataatct tctcgctatc
     5161 tacattgtcc aaatttttta ttttttgtag atatttatca tttttttcac atttttcaat
     5221 cataccatta tcatttaaaa ctgcgctaat taaagcatag tcattgtaaa aatactcttg
     5281 caaaagcggg atgattttat tttgaaaaat actttttaat tttgagatac ttaaaacata
     5341 ccaatcttct tcatattcat ctggtttaca ccaattatct ttattaaatt taacagcttc
     5401 actcataaaa aatgcgtgtc ctatggtttt tccctatcca ataaaaactc aattctttta
     5461 tttatactta ttaaaatatt ttgaagtatc tctgcaaaac cttctgtttt agcatcatct
     5521 cctaaataat cttcatcttt atttggattt tctacatctt tgcaaataaa aacattctta
     5581 agcaaatcag gatcaggcat catctctaca aattcaaatc ttcttcttaa ggctgtatca
     5641 agagaagtga tacttctatc agctgtattc atagtgccta ggatatatac atttttaggt
     5701 actccaaatt ttttaccgct ataaggcaaa gtaactttta attcctcgct ttcacctatc
     5761 cttttactag gttctattaa ggtgataagc tcaccaaaaa tcttactcac attaccgcga
     5821 ttgatctcat ctatgatgat tatataaggt aaatttattt tttcatcttt ttctttataa
     5881 tcttttaaac cttgtgattt caaatagttt aagatagctt taacatatgc tgaattatat
     5941 atttcatcta tattagaagt tttatataat ttttctatat tatctatact tactggatag
     6001 tctttatgat ttttgctcat atcatcaaat ttaattctaa atgtttttcc acctctatat
     6061 tgaatagaat attttgtatt tggcaattga aaatattttt caggattatt ggcatcttct
     6121 tttgtttttt ctttcaagtc atttatataa aaattaaaac tttctatgtc atctctattc
     6181 tccaaagctt tcttgcaaag ctctttaaaa attccatctt taaccttata attaatttgc
     6241 gaattttcat cactatttaa actaggcttt ataccttcta caaattcttc atatccgtag
     6301 ctttgatgaa aagttgtaaa gactatttgt ccatttttta catactcatc aaatttagct
     6361 tttttctcat ctctactttc taaattttca cccaagattt ccaaggcctt atctatagta
     6421 tggtaagttt ttcctgttcc tggaggccca taaagaattt gatttaaaga tagattttga
     6481 ttttcgctta gtatcttttc attttcaaaa tgctgttctt tataaatttt ttcattttcg
     6541 cttagcttga ttatgctaag gtttgaatta tttaatatat cttcaaacaa tggtttagca
     6601 tagcttgaat cttcttcaat tttacctaaa acgctatatc ttaaaaacct ttccaaagaa
     6661 tatgttctaa taatattatc aacactggca ataacttcta ttttttgatt ttttatttct
     6721 accttaaatt ctttatctcc gcctcttgtt tttaaatact taaccatatc ttttgaggta
     6781 tattctttat aggcattgac atattttaca aattctaaat aatgggaatt aatgcaagca
     6841 tgcggacatc cattaccact tttattattg tattcttgca acaatccttt ttttaattca
     6901 aataataatt tttttaaaag ttctatagag tttatttgaa atgtatcaaa atcatctcta
     6961 ttaacgatat ttagtctttt gcattcttca attatccctt ttgtagcttt gatatattga
     7021 tcaaaattct ttagtctttt ttctaaaaat gctctaaagt tttcttcatt tgattctttt
     7081 atttcggttt gtattttttc tccatttgaa aaattaaact cgacaaattt cataccattt
     7141 cctttcaatc tacaatcgca aaaaatttac aatttttata atatctacga aatttttctc
     7201 tatctttatt catatttttt atataagtaa agataggagt tttccaccta taaccttgac
     7261 ttttagcatg aaattcatct atcaattcac cctcttgata aatatacaca ctcataccac
     7321 catttttcac aactgcttct ttaaattcat cctcatcttt tggaaaataa taatacacat
     7381 taccattttg atctgcctta cttattttcc aatcgtattt atcttctagc attgtatgcc
     7441 ttttgaattt ttgtgtttaa ttttaattat ataaaagata ggtaaaaatt taaaaatcta
     7501 aatttttacc attgtatgaa ggttctggct tttttaatat cgctaaattt taaagtagtt
     7561 ttttcttgat tttctaaatt ttctaaagtg atattttcat cctctacgct gatgattttt
     7621 gcttcgattt tttctttttc acctgttgtg atttttacaa gctcattgat actttttgca
     7681 aaatgctcta tcttgctaag ttttctctca agtcctgctg aagatacttc taaaaaatac
     7741 tccccactta caggtggttc cacatcgaaa ataggtgata aaatttcact aagccttgca
     7801 caatcatcca aatttacacc ccttctttca cccttttcat ccaagggctt catcacataa
     7861 acgcggtaaa ttttcttgcc attttcgcta gttaattcgc tatcataaag ctctaaattc
     7921 acttctttgc ataaagcttc aagattcatt tttatccttt tttatttttt caaaaagtgc
     7981 atccatatgg ttttgatact caagcctatc atcaaattta aaatgaaaat tcggacacct
     8041 ataccaaccc tgctcactca tgcagtaatt ttgcaaagct ctacttgcct tttttaaaga
     8101 agataaaatt ttttcttgct catgaacatt aaaaaacatc ttatcaagat acacaaaagc
     8161 atcatatctg ccttttttac actctacatc cactacacac aaatttttca aattttcatc
     8221 atctaaattt gctaaagctt cagggatcag ctcttttaag atactttcag tgcgtagttt
     8281 tttaatctca cttgggttca tagacttgct tgttcctcta cttctttata gctttctata
     8341 taatcaccca ctctcatatc atcgcaccct tctataccta cgccacattc atagcctttt
     8401 gccacttctt tagcatcatc tttaaagcgt ttaagtgagc ttacatttcc ctcataaacc
     8461 acaactccat cacggataag gcgaatttta gccccacggt taatcacccc ttcggttacc
     8521 atacaacctg caatttgtcc gatttttggt acattgatca cttgtctaat ctctgcttgt
     8581 ccaagttgtt cttcagagat gatagggctc atcataccac ctagcaaggc ttttacatca
     8641 tcaagtagat tataaataac attataagtt tttatttcca cgcctttatc tttagcacgc
     8701 tctttgatct ctccggttgg gcgtatatta aagcctagta cgatggagtt ttcacttgca
     8761 cttgcaagct ctatatcgct ttgcgtgatc cctcctactc cactgtgtat gatattgact
     8821 ttaatttcat catttctaag cttttctaag cttgctttta aggcttctaa agatccttgt
     8881 acatcagctt ttaaaatcac aggaagggct tttaagtttc cttctttgat cttcgcccca
     8941 agctcatcta tacttacttt agtggatttg ctaagttctt tttggcggtt gtattcgtgg
     9001 cgcttgttag catactctct tgcttcttta tcactcttta ctgcgattaa aatttcaccc
     9061 gcatcagcca cttcactaag ccctacgata acaccacatt cacccggttt gatctctttt
     9121 aaagccttgc cttgatcatc gctcattgcg cgcacttttc cataagcttc acctgcaacc
     9181 acagtacttc ctacagtaag tgttccattt tgcacgataa tagtagctac cgcaccacgc
     9241 cctttttgca cagaactttc tataatgctt gctttagcaa aactttttgg attggcttta
     9301 agttctaaaa tatcagcttg taaaagcacg atttcaagca aatcttcaat acccattccc
     9361 gttttagcag aaactcctac aaattcataa gatccgcccc attctactgg catgatttcc
     9421 atttcggcaa gttgagtttt taccatatcg ggatttgctg cttctttatc cattttatta
     9481 atagcaataa taataggcac acccgctgct ttagcatgat ttatcgcttc tttagtttgt
     9541 ggttttaccc catcatctgc ggctacaacg atgattacaa tatcagtgat acttgcaccc
     9601 cttgcacgca tagcagtaaa agcttcgtga cctggagtat ctataaaagt gattttacgc
     9661 ccattttttt ccaccatata agcgcccaca tgttgagtga tcccccctgc ttcgccacta
     9721 gcgacacgag attttctgat ataatcaagc aaagaagttt taccatgatc aacatgcccc
     9781 atgatagtaa tcaccggtgc tctacttacc aaatctttct catcaacttc ttcttcatag
     9841 tcttttacat aatcaaactc atctgcttcg ttgatgatat tgatctctat
//
LOCUS       DARAII010000064         9876 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.064, whole genome shotgun sequence.
ACCESSION   DARAII010000064 DARAII010000000
VERSION     DARAII010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9876
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.064"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..918
                     /locus_tag="SB143_001232"
     CDS             <1..918
                     /locus_tag="SB143_001232"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEF9749766.1"
                     /translation="LVVNNNAAAVFLVLHSLCFDKELVTSRGELVEIGGSFRVSEVIK
                     AAGVKLCEVGTSNKTHLKDYEKAINENTKMLLKTHKSNFALIGFHSEVGIKDLGNLAK
                     EKGLLSYYDLGSGWCENLNPKLIKNEPKIKDLIKHCDILSFSGDKLFGSVQAGIILGK
                     KELIDKIKENQLLRMLRVDKITLALLNESLKIYLEKDYEKITSLKLLNDEIAHIKEKA
                     LRVQNEIQIKSELKMRKSLVGGGSMPDKTLETYVLAFNGNALKLQEKFRAKNIIGRIE
                     NEAFVLDFRTIREKDLSKLIQIINTMENL"
     gene            915..2714
                     /gene="selB"
                     /locus_tag="SB143_001233"
     CDS             915..2714
                     /gene="selB"
                     /locus_tag="SB143_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEF9749767.1"
                     /translation="MNSLLIGTAGHIDHGKTSLIKAINGFEGDSLKEEKERQITINLS
                     FSNLNYKQKHLSFIDVPGHKDLVKTMISGAFGFSACLFVVDINEGLKEQSIEHLEVLE
                     LLGVKDIILVLSKCDLCENPKEQEQKILNSLEFIPMKVFHTSIKDQESIERLKNYLLN
                     LECKNANANLVFRYYIDRVFSLKGIGTIVTGSLNEGKISLNEKIICLDNQKELVVKNI
                     QNHESNFAEISAFNRVALSLNCDYKELKKGYVLSKKGFFKGFKECDVLIKAKRLKNEK
                     MLFCVGAKSIECKISILKELENNEFFAHLEFEKNLFLCFNEKFILLQNNRVVGGGEVL
                     NPVSEPLKKEQKNKFLMLLKNKELKKAFEFLKNTHKYGFGLLSSYQRFKLSHEEALNL
                     AKELNGVFIDEKNLNIYNLLALDELKKFISFILEKNPYAMLSASSLALRLPWASAEFC
                     EFGLQNLSNLLEFEKGVYFKKGIDYEKLREKNNDELYNILKKQGIKPQAPYNLYEFLE
                     LDRKSGDEILKKLTKQNRVIRLSHNLFIEKNALDKLMQECLEILKSQSLDIQSMKERF
                     NLSRKYAIAYLEYLDKDERVQKKDEKRFLKTNI"
     gene            2763..3473
                     /locus_tag="SB143_001234"
     CDS             2763..3473
                     /locus_tag="SB143_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEF9749768.1"
                     /translation="MKKISLILACSMSLFAASNSEISDFYSKSIKAQFPNATVSVGNR
                     QKVGNTGFESVIVTITLEGQKQEQILFTKDNLIVPDIIDLKTKTSYAQEYEMKKFQEA
                     RANFTKNVKPVVQKETMLIALGDKSKPAIYVFSDPECPYCRDHLAQIKDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKESKKAKSDDEKIAILNKYYDANIKSYPKVSDSELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            3518..4000
                     /locus_tag="SB143_001235"
     CDS             3518..4000
                     /locus_tag="SB143_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749769.1"
                     /translation="MSACAKPAFVQSSIQTSNEGIFLKAKQGQSFSITLQNPSKIQST
                     LKDELALRLKNLGLKEVSLNADYEILINLVDFKKHSYAQRITSSGRFFYDFDPFENNG
                     EWYIENYYTMQVNIQIGSKNTLQKTSLFARTAYLSDKKRCQLSLENKIIDQISSFFYF
                     "
     gene            complement(4002..5297)
                     /locus_tag="SB143_001236"
     CDS             complement(4002..5297)
                     /locus_tag="SB143_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749770.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSFYALELQGANEFLVGLL
                     VGVYALTQMALQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSWADNIYTMLIGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAIMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAVLSLLCIILLYTVVPKENKLTHENTKTPFFHLIKQKNLALMNFTNFMQKMLMSIA
                     FLSIPIILVKHLGFDEHKLWIVYTASMIAGFIAMGFAGSLGEKRGLAKQILLLGIAFF
                     VLSYIFFVFSSTITFFIVAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLNKLELLAIILVILSIVWFIALLYLKNPSEFKNIYLPLETTL
                     NLSEFGKNLGVVDIYKNSKNLVIKFDSKLTNKEELESKI"
     gene            5439..5894
                     /locus_tag="SB143_001237"
     CDS             5439..5894
                     /locus_tag="SB143_001237"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HEF9749771.1"
                     /translation="MNRFQTFSLAMEGKVNIELLAAYKDKIETLSDETLFRFWYLELK
                     NPIIGLILGVVPAFILSGLTFDRFYKGDMGLGFAKMAMWAFIFIGLLIAGFFDSSSML
                     VVWIFNIVALFIWNILDFFLVWQGIKNDNLAKIIQFLEQDNENFISNKQ"
     gene            5866..6474
                     /gene="rdgB"
                     /locus_tag="SB143_001238"
     CDS             5866..6474
                     /gene="rdgB"
                     /locus_tag="SB143_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEF9749772.1"
                     /translation="MKILLATSNKHKVIELKELLKEFEIYAFDEILTTFEIEENGNSF
                     KENALIKARAVFNALDENQKNEFIVLSDDSGICVDVLGGKPGIYSARFSGKGDDKSNR
                     DELVKQMRVLGFEKSKVHYVAAIALVSLEGEWTMHGTMHGHVINTERGENGFGYDSLF
                     IPKGFDKTLAELSHNEKNQLSHRFKALELTRIVLKVLNKGKG"
     gene            complement(6508..8970)
                     /locus_tag="SB143_001239"
     CDS             complement(6508..8970)
                     /locus_tag="SB143_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEF9749773.1"
                     /translation="MFAKFLKIFIYHPKSTFFATLFICLFLSFFASKLSVDASAESLL
                     LEDDKDLKIFRELSKHYKSDNFLLLAFKPEDENPFSGKNLNKLKELHQELEQVSLVER
                     VFSIINAPLLQSSENTDLKELLKNIPNIQSKDINLTKAQNEILNSPFYKNNIISKDGK
                     TTGLIIYLKPDTIYNELIEKRDLSTDENKKEQIRLAIKKHQEQQKIITKQGLDTIKNI
                     IKKYEKNEDRFYLGGVSMIADDMITYIKSDLMLYGISLVFLLACALYCFFRAWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSIVIHLITHFIEISKLYPK
                     AKIERLVLQTLLAKANPSFYAIITTMIGFFSLMLSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKLKKYYKKEFKFNFLAFCAKTSLDPKKRSIIYILSITTIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLDIIIRFPDNKNNPSLNDVFDSFE
                     SEFDALATKDTYWFNSQKTRIAKKVHEFLENKEFIGSVLSLNSLLSLGKNINDGKDLD
                     DFTLAFLNENLPPELKQELLSPFVNIEENELRFSIRIIDSDPKLRRNEFLTNLKQELE
                     TLLKNDGVEIQITGIMLLYNNMLQSLFSSQFDTLVFVILVIFVLFIIIFRSLKFSIIA
                     LLVNIIPLSMVFALMGILGIPLDMMSITIAAIAIGIGVDDTIHYIYRFKEEIKTKSVE
                     EAILASHLSIGSALYYTTIGIVLGFSVMMSSNFIPTIYFGVLTVFVMILLLSGSLFLL
                     PSLLVTIYTKKTKALNPHKAHK"
     gene            complement(8970..9539)
                     /locus_tag="SB143_001240"
     CDS             complement(8970..9539)
                     /locus_tag="SB143_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEF9749774.1"
                     /translation="MKKIFLILALSLNIFALQLDEISNTMQKNINKSLQLLQNNKEDK
                     KQAADGIFLIFDHIIDYKLMAQLSLSKDYAKLNPKEQEKFASAFEASLKKSFTDKLDL
                     YKDQVLMVKNGELKNAKRYFLTSSMIVDGEEKNIIFKFYNNNNDWLIYDIDVLGVSIV
                     QTYRSQFGDILANQDFDTLLQKLENITIE"
     gene            complement(9549..>9876)
                     /locus_tag="SB143_001241"
     CDS             complement(9549..>9876)
                     /locus_tag="SB143_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEF9749775.1"
                     /translation="ASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPSNLRDTLTL
                     PATWYASPTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYYNTPNLYPFIRDAYEQR
                     RNELSK"
BASE COUNT         3591 a         1322 c         1632 g         3331 t
ORIGIN      
        1 ttggttgtaa ataataacgc cgcagcagtt tttttggtac ttcattctct ttgttttgac
       61 aaagaacttg taacttcaag gggtgagctt gttgaaattg gcggaagttt tcgtgtgagt
      121 gaagtgatta aagctgcagg agtaaagctt tgtgaagtag gtacgagcaa taaaacgcat
      181 ttaaaagatt atgaaaaagc tataaacgaa aatactaaaa tgcttttaaa aacccataaa
      241 tctaattttg ctttgattgg ttttcatagc gaggttggca tcaaggattt aggaaatttg
      301 gctaaagaaa aaggactttt gagttattat gatttaggtt cgggttggtg tgagaattta
      361 aatccaaaac taataaaaaa tgagcctaaa atcaaagatt tgataaagca ttgcgatatt
      421 ttgagcttta gtggggataa gctttttggt agtgtgcaag ctggaattat actgggtaaa
      481 aaagaattga ttgataaaat taaagaaaat caactgctaa gaatgctaag agtagataaa
      541 atcacacttg ctttgttaaa tgaaagtctt aagatttatc ttgaaaaaga ttatgaaaaa
      601 atcacaagtt taaagctttt aaatgatgaa atcgctcata ttaaagaaaa agctttaagg
      661 gtacaaaatg aaattcagat taaaagtgaa ttgaaaatgc gtaaaagttt ggtagggggt
      721 ggttctatgc ctgataaaac tttagaaact tatgttttag cttttaatgg caatgcttta
      781 aaactgcaag aaaaatttag agcaaaaaat atcataggtc gcatagaaaa tgaagctttt
      841 gtgctggatt ttaggacaat tagagaaaaa gatttatcaa aattaattca aattatcaat
      901 accatggaaa atttatgaat tcgctattaa ttggtactgc agggcatatt gatcatggaa
      961 aaacttcttt gattaaagct ataaatggtt ttgaaggaga tagtttaaaa gaggaaaaag
     1021 aaagacaaat taccattaat ttaagttttt ctaatttaaa ctataagcaa aaacaccttt
     1081 cttttattga tgtgccaggt cataaagact tggttaaaac gatgataagc ggggcttttg
     1141 gttttagtgc ttgtttgttt gtagttgata tcaatgaggg cttaaaagaa caaagtatag
     1201 agcatttaga agtacttgaa cttttaggtg tcaaagatat tatcttggtg cttagcaaat
     1261 gcgatttatg tgaaaatcct aaggaacaag agcaaaaaat tctaaactca cttgagttta
     1321 tacctatgaa agtgtttcac acttcgataa aggatcaaga gagcattgag cgcttaaaaa
     1381 attatctttt aaatttagaa tgtaagaatg ctaatgcaaa tcttgttttt cgttattata
     1441 tcgatagggt tttttcttta aaaggtatag gaactatagt tactggaagc cttaatgagg
     1501 gcaaaatttc cctcaatgaa aaaatcattt gtcttgacaa tcaaaaagaa cttgtggtta
     1561 aaaatataca aaatcatgaa agtaattttg ctgaaatttc agcttttaac cgtgtggctt
     1621 tgagcttaaa ttgtgattat aaagaattaa aaaaaggtta tgttttaagt aaaaaaggtt
     1681 tttttaaggg ctttaaagaa tgtgatgttt tgattaaagc taaaagatta aaaaatgaaa
     1741 aaatgctttt ttgcgtgggt gcaaaaagca tagagtgcaa gataagcatt ttaaaagagt
     1801 tagaaaataa tgaatttttt gctcatcttg aatttgaaaa aaatcttttt ttatgtttta
     1861 atgaaaaatt tattttattg caaaataatc gtgttgtggg cggaggagag gttttaaatc
     1921 ctgtgagtga gcctttgaaa aaggagcaaa aaaacaaatt tttaatgctt ttgaaaaata
     1981 aagaattaaa aaaagctttc gaatttctaa aaaatacgca taaatatggc tttggcttgc
     2041 tttcaagtta tcaaagattt aagttaagtc atgaagaagc tttgaattta gccaaagaat
     2101 taaatggagt ttttatagat gaaaaaaatc ttaatattta taatctctta gccttagatg
     2161 agcttaaaaa attcatttct tttatacttg aaaaaaatcc ttatgccatg ctttcagcaa
     2221 gctctttagc tctaagactt ccttgggcta gtgcggaatt ttgtgaattt ggacttcaaa
     2281 atctatcaaa tttacttgaa tttgaaaagg gagtgtattt taaaaaagga attgattatg
     2341 aaaagcttag ggaaaaaaac aatgatgagc tatacaatat acttaaaaaa caaggcataa
     2401 aacctcaagc accttataat ttatacgaat ttttagaatt agacagaaaa agtggagatg
     2461 aaattttaaa aaaacttacc aagcaaaatc gcgttataag actttctcat aatcttttta
     2521 tagaaaaaaa tgccttagat aagcttatgc aagagtgctt agaaatttta aagagtcaaa
     2581 gccttgatat acaaagtatg aaagagcgtt ttaatctttc aagaaaatat gccatagctt
     2641 atttagaata tcttgataaa gatgagaggg tgcaaaaaaa ggatgaaaaa agatttttaa
     2701 aaacaaatat ttagaatatc attataaaat aaaatcttaa tatttgattt taaggaaaat
     2761 aaatgaaaaa aataagctta atccttgctt gctcaatgtc tttatttgct gctagcaatt
     2821 ctgaaatcag tgatttttat tccaaaagca ttaaagcaca atttccaaat gcaacagtga
     2881 gtgtaggtaa tcgccaaaag gttggaaata caggttttga aagcgtaatt gttacgataa
     2941 cgcttgaagg acaaaagcaa gagcaaattc tttttacaaa agataatctt atcgttcctg
     3001 atattattga tttaaaaact aaaacttctt atgctcaaga atatgaaatg aaaaaattcc
     3061 aagaggctag agcaaatttc actaaaaatg ttaaacctgt agttcaaaaa gaaacaatgc
     3121 ttatagcttt aggcgataaa agcaaacccg ctatttatgt attttcagat ccagaatgtc
     3181 cttattgtag agatcatttg gcacagatta aagatgagct taaaaattat caagtcaatt
     3241 atatcttaac cccagtgcat ggtaaatcag cttttgaaaa atcagcattg atttacaaag
     3301 agagtaaaaa agctaagagt gatgatgaga aaatagctat tttaaataaa tattatgacg
     3361 caaatatcaa atcttatcca aaggtgagcg atagcgagtt aaaagaagta ttttctcttt
     3421 atgaaaaata tcgttcttta ggccttagtg ctactccaac catcatcaaa taatgagaaa
     3481 aattcgtcta atttcagttt tatttctagc actctttttg agtgcttgcg caaagcctgc
     3541 ctttgttcaa agctctatac aaacaagcaa tgaaggcatt tttttaaagg ctaaacaagg
     3601 gcaaagtttt agtatcactt tgcaaaatcc aagcaaaatt caaagtactc taaaagatga
     3661 attagcttta agacttaaaa atttaggatt aaaagaagta tctttgaatg ccgattatga
     3721 aattttaatc aatcttgtag attttaaaaa gcattcctac gctcaaagaa ttacaagttc
     3781 gggaagattt ttttatgatt ttgatccttt tgaaaataat ggggaatggt atattgaaaa
     3841 ttattatacc atgcaagtaa atatacaaat tggctctaaa aatactctgc aaaaaacgag
     3901 tttgtttgct cgcacagctt atcttagtga taaaaagcgt tgtcagcttt ccttagaaaa
     3961 taaaattata gatcaaattt caagcttttt ttatttttga tttaaatttt actttctaat
     4021 tcttctttat ttgttagctt gctatcaaat ttaatgacta gattttttga gtttttgtat
     4081 atatctacaa cgcctaaatt tttaccaaat tcgctcaaat ttaaagtcgt ttctaaaggc
     4141 aaataaatat ttttaaattc agaaggattt tttaaatata acaaagctat aaaccaaaca
     4201 atagacaaaa tcactaaaat aatagccagt aattctaatt tattaagatg taaaaatata
     4261 cctcctatta tacctcctat aaaacttcca ccatatccaa aagcattaaa aagtcctaaa
     4321 gctgcgcctt tttcatgtac tttacaaaat ttagaagcac agctttgcat aatgggctcg
     4381 tgcaagttaa aacctataaa aaatatcaca accgcaacga taaagaaagt aattgtgcta
     4441 gaaaaaacaa aaaagatata agaaaggaca aaaaaagcta tccctaaaag taaaatttgc
     4501 tttgctaagc ctcttttttc gcctaaactt cctgcaaatc ccatggcgat aaagcctgct
     4561 atcatagatg ctgtataaac aatccaaagt ttatgttcat caaagcctaa atgttttact
     4621 aaaatgatag gaatgcttaa aaatgctata ctcataagca ttttttgcat gaaattagta
     4681 aaattcatta gggctaaatt tttttgttta ataagatgaa aaaaaggagt tttggtattt
     4741 tcatgggtga gtttattttc ttttggaacg acggtataaa gcaagataat acacaaaagc
     4801 gataaaacag cactaagatc aaaaagacta gaaagccccc atttagcact cattaaaggc
     4861 gagattacca tagaagctgc aaaagatagt cctataaaag atcccattat tgccatagct
     4921 ttaccgcgat tttcttcagt gataaaatca ctaatcattg ctgtagctac tgcaccaata
     4981 gcccctgcac cttgaagcat tctgcctatt agcattgtat aaatattatc agcccaagag
     5041 cagattaaag agcctatgat aaagataatc agtcctataa gcatggtttt tttgcgtcca
     5101 attttatcac ttagtattcc aaaaggcatt tgtaaagcca tttgagttag agcataaaca
     5161 cccactagaa gtcctactaa aaattcattt gcaccctgga gttcaagagc ataaaagcta
     5221 agcacaggca aaactataaa aagtccaaaa aatcttgttc caacgataaa agataggggt
     5281 aagacattat ttagcattat ttggtttcct aaaaatctta aattttacaa aaaaagataa
     5341 ttttactatg aattatatta aggattgtta agttttttat tttatctttt taaaaggctt
     5401 aaaaaagtaa gattttaatt ttttaaaagg atgggtttat gaatcgtttt caaacttttt
     5461 ctttggcaat ggaaggtaaa gtaaatatag agctgctggc agcttataaa gataaaattg
     5521 aaactttaag cgatgaaaca ttgtttcgtt tttggtattt agaattgaaa aatcctatta
     5581 tagggcttat tttaggcgta gtacctgctt ttattttatc agggcttact tttgatcgtt
     5641 tttataaagg ggatatgggg cttggttttg caaaaatggc aatgtgggct tttattttta
     5701 taggtttact tattgcaggt ttttttgatt catcttctat gcttgtagta tggattttta
     5761 atatcgtcgc tctttttata tggaatatac ttgatttttt cttagtttgg caagggatta
     5821 aaaatgataa tttagcgaaa ataattcaat ttttggagca agataatgaa aattttatta
     5881 gcaacaagca ataaacacaa agttatagaa ttaaaagaac ttttaaaaga atttgaaatt
     5941 tatgcctttg atgaaattct aaccaccttt gaaatagaag aaaatggcaa tagttttaaa
     6001 gaaaatgctc ttataaaagc aagagcggtt tttaatgctt tggatgaaaa tcaaaaaaat
     6061 gaatttattg ttttaagcga tgatagcgga atttgtgtcg atgttttggg cggtaagcca
     6121 ggaatttatt ctgcgcgttt tagtggtaag ggagatgata aaagcaatcg tgatgagctt
     6181 gtaaaacaaa tgagagtttt gggttttgaa aaaagtaagg ttcattatgt agctgctatc
     6241 gctttggtaa gcttagaggg tgaatggaca atgcatggaa ctatgcacgg acatgtaatt
     6301 aacacagaaa gaggtgaaaa tggctttggc tatgatagcc tttttatccc taaaggcttt
     6361 gataaaactt tagcagaact tagccataat gaaaaaaacc aactttcgca tcgttttaaa
     6421 gctttggaac ttacaaggat tgttttaaaa gttttaaata aaggaaaagg gtgagaaatt
     6481 ttatcaagta tattttagcg gttatattta tttatgtgct ttatgcgggt ttaaagcttt
     6541 ggttttctta gtataaattg taaccaaaag acttggaagc aaaaataagc ttccacttaa
     6601 aagtaaaatc atcacaaata cagttaaaac tccaaaataa atcgtaggaa taaaattact
     6661 actcatcata acgctaaaac ctaaaactat accaatggtt gtataataaa gtgccgatcc
     6721 tatgctaaga tgtgaagcta aaatcgcttc ttctacgctt ttggttttta tttcttcttt
     6781 aaaacgatag atataatgta tggtatcatc cacgcctata cctatggcta tagcagctat
     6841 ggtaatactc atcatatcta aaggtatgcc taaaattccc ataagggcaa aaaccatact
     6901 taaaggaatg atattaacca gtagggcaat aattgaaaat ttcaagcttc taaaaataat
     6961 gataaacaat acaaagataa ctaagataac aaaaacaagt gtatcaaatt gtgatgaaaa
     7021 aagactttga agcatattat tataaagtag cataatgcct gtgatttgaa tttccacacc
     7081 atcatttttt aaaagtgttt cgagctcttg cttgagattt gttagaaatt cattacgcct
     7141 tagttttgga tcagaatcta taatgcgtat gctaaatctt aactcatttt cttctatatt
     7201 aacaaagggt gaaagaagtt cttgcttaag ttctgggggt aaattttcgt ttaaaaacgc
     7261 aagagtaaaa tcatctaaat ccttgccatc attgatattt tttcctagac ttaaaaggct
     7321 attaagactt aaaaccgaac ctatgaattc tttattttct aaaaattcat gcaccttttt
     7381 tgcaatacgc gttttttgag aattgaacca ataagtatcc tttgttgcta gagcatcaaa
     7441 ttcgctttca aagctatcaa atacatcatt taaactaggg ttgtttttat tatcaggaaa
     7501 acgaatgata atatccaaag gcagggttcc gcctaaattt ttatcaataa ccaataagcc
     7561 ttttttgatt tcacttccat ctttaaaata atttacaaaa gaattttcaa ctcttagttt
     7621 agaaattcct attagagcca agataatagt agtaatagag agtatgtata taatagagcg
     7681 ttttttagga tctaggcttg ttttagcaca aaaagctaag aaattaaatt taaattcttt
     7741 tttgtagtat tttttgagtt taagaagcac taaaatactt gctaaaaata aatagctaaa
     7801 aataagtgca agtcctatac ctatactcat cataatacca agttttatga taggctctat
     7861 atttgaaagc atgagggaga aaaagcctat catggttgta atgatggcat aaaaactagg
     7921 atttgctttt gcaagtaggg tttgaagtac aaggcgttcg attttagctt ttggataaag
     7981 cttgctaatt tctataaaat gtgtgatgag gtgaatgact atgcttagag tgatgattaa
     8041 gaccaaagca acatagtttg aagaaataac cgtgatttga aaatttaaaa gagcaaaaac
     8101 gccacttgcc gcacttaaac ttataaaaca aataaagaga ggtaaaaata caaaacgcca
     8161 cgcacgaaaa aagcaataaa gtgcacatgc taataaaaac acaagagaaa ttccatagag
     8221 catgagatca gattttatat aagttatcat atcatcagca atcatactca ccccgccaag
     8281 atagaatcta tcctcatttt tttcatattt tttgatgata tttttgattg tatctaagcc
     8341 ttgttttgta atgatttttt gttgttcttg gtgtttttta attgctaagc gaatttgctc
     8401 ttttttattc tcatctgtgc taagatcgcg tttttctatg agttcattat agattgtatc
     8461 gggtttaaga tagatgataa gtcctgttgt tttgccatct tttgaaatga tattgttttt
     8521 ataaaaagga ctgtttaaaa tttcattttg agctttggtg aggttaatat ccttgctttg
     8581 tatattggga atatttttta aaagttcttt taagtctgta ttttctgaac tttggagcaa
     8641 aggagcattg ataatgctaa aaacacgctc gactaatgaa acttgttcta attcttgatg
     8701 aagctctttt aatttgttta aatttttacc tgaaaaaggg ttttcatctt caggtttaaa
     8761 agctaaaagt aaaaaattat cacttttata atgtttagaa agttctctaa aaatttttaa
     8821 atctttatca tcctctaaaa gcaagctttc agcacttgca tctacgctta atttagaagc
     8881 gaaaaagctt aaaaataagc atataaaaag agtagcaaaa aaagtacttt ttggatgata
     8941 aataaaaatt tttaagaatt tcgcaaacat tattctatgg ttatattctc aagtttctga
     9001 agtagagtat caaaatcttg gtttgctaaa atatccccaa attgagatct ataggtttga
     9061 actatactaa cacccaaaac atcgatatcg tagataagcc aatcattatt attgttataa
     9121 aatttaaaga tgatattttt ttcttcccca tctactatca tcgaagaggt taaaaaatat
     9181 cgttttgcgt tttttaattc tccatttttt accattaaaa cttgatcctt ataaagatcg
     9241 agtttatctg taaagctttt tttaaggctt gcctcaaaag cactagcaaa tttttcttgt
     9301 tctttagggt ttaatttagc ataatcttta gaaaggctca gttgagccat gagtttataa
     9361 tcaattatat gatcaaaaat tagaaaaatt ccatcagcag cttgtttttt atcttctttg
     9421 ttgttttgta gaagttgtag gcttttattg atattttttt gcatggtatt agaaatttca
     9481 tctaattgta aggcaaaaat atttaaagat aaagctagaa ttaaaaatat ttttttcatt
     9541 tttttccttt atttactaag ctcattgcgt ctttgctcgt aagcatcgcg tataaacgga
     9601 tataagttag gagtattata ataaatctca tcaatctcat caagtctaaa gctaagttca
     9661 tttccaaagc cataggcgct tatggctatg cttgcccaag tgggatcgat ataagctgtt
     9721 gggcttgcat accaagttgc aggtagggtt aatgtatctc ttaaattgct aggtccaagt
     9781 atgggcaaaa cgatatgaaa accgcttccc actccccaat gcgctaaaac agttcctaaa
     9841 tcagcagggt gttttttaag tcccatttta cttgca
//
LOCUS       DARAII010000065         9788 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.065, whole genome shotgun sequence.
ACCESSION   DARAII010000065 DARAII010000000
VERSION     DARAII010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9788
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.065"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..176)
                     /locus_tag="SB143_001242"
     CDS             complement(<1..176)
                     /locus_tag="SB143_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEF9749776.1"
                     /translation="MTIIEGKLNLDSNTKIAIINARFNHIITDRLVEGARDAFLRHGG
                     KEENLSLILVPGAF"
     gene            complement(178..990)
                     /gene="kdsA"
                     /locus_tag="SB143_001243"
     CDS             complement(178..990)
                     /gene="kdsA"
                     /locus_tag="SB143_001243"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEF9749777.1"
                     /translation="MKKMILIAGPCVIENKDLVFKVAQNLQEFNENENIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKVLQSVKNEFGMKILTDIHESTQAAPVSEVVDVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKVLQTRGIEEEGYEVADKNGIF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGVDGFFFETHTNPCEALCDGPNMLDLNRLKACVKTLLEIQNIIEGK"
     gene            complement(987..1919)
                     /locus_tag="SB143_001244"
     CDS             complement(987..1919)
                     /locus_tag="SB143_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEF9749778.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGVLFIVYLLKRSKVHKEGGHFWLLVFRGVTGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFIIFKENIGAKGWLGILIAFSGVLLIAQPWADSSTHSGFDLKNSIIGV
                     MSGFLAALALTSVRELRKFYTTEQIAFSFILLGALMPLISMIGAEFFEPKHLDSLHLD
                     FILAPFVMPSLTAWLIIAVMGALGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMVV
                     GIILGDDLPSAMVFLGIIGIIFGGIILVKNKGKK"
     gene            2035..3417
                     /gene="der"
                     /locus_tag="SB143_001245"
     CDS             2035..3417
                     /gene="der"
                     /locus_tag="SB143_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEF9749779.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSEISGTTRDTNKTEV
                     FINSKKALLIDSGGLDESNELFKNVKKNTLKIAKQSDIILYLVDGKLSPDDEDRQFFH
                     SLKKLGKPIALVINKVDNKKDEERSWEFANFGVKEVFNLSVTHNIGLDELYNWLENFL
                     DEQFLIPDEEENLEDFLEHYEEGKEFQFKELDQNYIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESIVYKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSN
                     SQIALLVLDANEGFNELDERIAGLAAKHYLGVIIVLNKWDKTEFEFDKVVKELKLDRF
                     KFLAYAPVVSVSALSGKRVHVLLEKILEVFTNFTQKIPTSKLNDLIASATKAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            3407..3901
                     /locus_tag="SB143_001246"
     CDS             3407..3901
                     /locus_tag="SB143_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEF9749780.1"
                     /translation="MKVKNIIFIGFMGSGKSTIARALAKDLDLVFLDSDGLIEMKFDQ
                     KISEIFKEKGEAFFRQEEQKVANFLCSCNGASIASGGGFIHVLDFDKIGFCIYLKASF
                     EYLKKRLSENEIAKRPLFYDEVQAKRLYNERLNKYEQKANLILDVENKSIDELVIEIK
                     KVIK"
     gene            3898..4857
                     /gene="trpS"
                     /locus_tag="SB143_001247"
     CDS             3898..4857
                     /gene="trpS"
                     /locus_tag="SB143_001247"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEF9749781.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIRQMVEAQEKSEMFMFIANYHAM
                     TSSQDGKKLEQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQLVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEAKINEEVAVVVGTDGAKMSKSYQNTIDIFASQKALKKQISSIVTDS
                     TALEDPKDYQNCNVFKIAKLFLNEVEQKELQARYEKGGEGYGHFKMYLNDLVNEYFKE
                     ARMKYDELLEKPSHLKEILELGASKARKIAQEKMQKIYEKIGL"
     gene            4867..6102
                     /gene="serS"
                     /locus_tag="SB143_001248"
     CDS             4867..6102
                     /gene="serS"
                     /locus_tag="SB143_001248"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEF9749782.1"
                     /translation="MLDLKNLQNNFDEVAKKLQNKKVDENILKNLAELFTNLKKEKAS
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKIKINEQNAKVNALENELETIAHAIPN
                     IPDECVPVGEDEEENVEIKKVLTPPQFDFTPKEHHDLGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNSPTMFGTGQLPKFKDDMYKIED
                     EDLYLISTSEIPVTNLYSGEILTSESLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSIFNEMVECASDLLSSLGLAHRHLMLCTGDLGFSAAKTIDLEV
                     WIPSQNKYREISSVSNCRDFQARRAKIRYKNEKGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGRIQIPDVLKKYF"
     gene            6112..8574
                     /locus_tag="SB143_001249"
     CDS             6112..8574
                     /locus_tag="SB143_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEF9749783.1"
                     /translation="MADKEDIVLEKPEDTLNEPRLDESLGEFKGQEGQAPEDEEFASL
                     PEELPRENSDGGFKFTRESAPEESSTFEEVKEDEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFNEGKVKPDIIASKPIEQPVVMPDESYNYNDMTRVDGMIQKANALYLKGE
                     VEQALKVYEQIAVYNESLSNYNLGVSQMNEGKFDEAFDSFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFKYYIDLAQVYLPKEGKSKLYDYYLALINYYKGYYPEALQMLQRVNS
                     EPYTDVAKYLSAKIYAKMDFDAKSVQQLNTQGSFEPSLSLGLLYARMGEYDKAKIALN
                     TAMKIERDFNQSLSALTLIDIKTGDFQDMLLRLQDTYRNDEDKYKILDRYKIKVRLNK
                     ELFNIAIAQRNFSNDILKKQKDQFDLLFYFAPYQVFDSKQASLYIKKANITNFVDDSS
                     DGQSYLARSQALSSTNVKISNIINDALNQKLRLANKEFQALLEDYPEHSILQYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCGKLSDNDTTKLYHEILDNIAADSN
                     FKANMQKNMLFLANGDYISMLPYLDENGQKTPLNLIFETIIAKNNNLNNQVDVRIAKL
                     RSELPQDIVANILYFNSLNSNLNIKEYAQNAQIHFKNLQVDYRSVFGGSNIARELYVN
                     LMHIAGLLNLERQKFKTLINTSKVKDEGMIQTLAYLDIFAQQYEESYALYNTLIDEYG
                     AKDSRTLFLASVAAVGANNPNSAIALLQLSKLTDKNNKESKVALGLLYQEVGNYEAAM
                     TQYRTLPNDFKSEFFTFDIKNQ"
     gene            complement(8603..9229)
                     /locus_tag="SB143_001250"
     CDS             complement(8603..9229)
                     /locus_tag="SB143_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749784.1"
                     /translation="MQINTFSNVASMAQAQVSNKKADGNATENTKDTNVQSANSNQDI
                     LDKLNALGGKGISQIYLVQFQQQTMSTVLNTSNAQAGINDLLGGNDLNSVKSMLSDID
                     FASLGYNGKNPLTMNTDELNQLISEEGFFGIDNTANRIADFVIKGAGNDVEKLKKGLE
                     GIKQGFEQAEKIWGGELPQISQDTIEATIKKVSDRIDELGGKTLDLKA"
     gene            complement(9321..>9788)
                     /locus_tag="SB143_001251"
     CDS             complement(9321..>9788)
                     /locus_tag="SB143_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEF9749785.1"
                     /translation="AVDVMCQTIIETEKRYPYNKFNEFENLDNTDKIMRSSAHLATDL
                     NADAIFSLTSSGKSAIKISRYRPDMEIIAVAHSEKTLNSLSIVWGVNPAILVNKSEDL
                     TDLLRDSVKSSVEKGFMNKEKCYLLTAGFPTGVEGTSNLIRILAKEQIAYYLK"
BASE COUNT         3392 a         1443 c         1761 g         3192 t
ORIGIN      
        1 tcaaaagcgc ctggaacaag tataaggcta agattttctt ctttgccacc atgtcttaaa
       61 aaagcatctc ttgcaccttc tacaaggcga tcggtgatga tgtgattaaa tcttgcattg
      121 atgatagcaa ttttggtatt tgagtctaaa tttaattttc cttcaatgat agtcatatta
      181 ttttccttca atgatatttt gaatttctaa aagtgttttt acacaagctt taagacgatt
      241 aagatcaagc atattaggcc catcgcataa agcttcgcaa ggattagtat gtgtttcaaa
      301 gaaaaagcca tctactccta cagctgctgc tgctcttgct aaaggctcta caaattcgct
      361 ttttcctcca ctacttcccc ctgcagcccc tggcatttgc acactatgag tagcgtcaaa
      421 tataacagga gcaaattcac gcatgataac caaagatctc atatccacga ctaaatttcc
      481 atagccaaag ctagctcctc tttcagctac aaaaatacca tttttatcag ctacttcata
      541 gccttcttct tctataccgc gtgtttgaag tacttttttg acactgtatt taatatcgct
      601 tgggttaaga aattgccctt ttttaatatt tactttcgcc tttgttttgg ctgctgcgac
      661 tagcagatca gtttgtctgc ataaaaaagc aggaatttgt aaaacatcaa ccacctcgct
      721 tacgggtgct gcttgcgtgc tttcgtgtat gtcagttaag attttcatac cgaattcatt
      781 ttttacactt tgtaaaactt tcaatccttc ttcaagacca gggcctctaa aagaattaat
      841 acttgtacga tttgctttgt caaagcttga tttaaaataa aattctatat tttcattttc
      901 attaaattct tgtaaattct gtgctacttt aaaaaccaaa tccttatttt caatgacgca
      961 aggaccggca atgagtatca tttttttcat ttttttcctt tgtttttaac caaaattatt
     1021 ccaccaaaaa taatgcctat tatacctaaa aaaaccatag cacttggtaa atcatcaccc
     1081 aaaattatac ccactaccat actaaagact acatcaagat agcttacacc tgctacaaca
     1141 cctgcttgtt tggctatgcc ataagctttg gttacatgaa tttgataaat agtgcccaag
     1201 gctcccatga cagcaatgat aagccaagct gtaaggctag gcatgacaaa aggtgctaaa
     1261 ataaaatcca aatgcaaaga atcaagatgt tttggctcaa aaaattcagc acctatcata
     1321 gagattaaag gcattaaagc ccccaaaagg ataaaagaaa atgcaatttg ttctgtagtg
     1381 taaaattttc taagctctct tacacttgta agagccaagg ctgctaaaaa tccactcata
     1441 acacctatga tagaattttt taaatcaaaa cccgaatgag ttgaactatc cgcccaaggt
     1501 tgcgcaatta aaagcacccc gctaaatgcg attaaaatcc ccagccatcc cttggctccg
     1561 atattttctt taaaaataat aaaagctatt aaagtgatga aaattggagc agttttttga
     1621 aaagcaaaag caccccctag ggtaatattt gaaacattgt aaaaaaacat ataaagcgaa
     1681 agtgttcctg ttaccccgcg aaagactaaa agccaaaaat gtcctccttc tttgtgaact
     1741 tttgagcgtt ttagtagata aactataaac aatacgccga tgatatttct aaaaaacata
     1801 atttcaatcg aactcatttc tttgctaaga attttcgcac aagctcccat aagtgcaaaa
     1861 tctaagcacg ctaaaatcat aaaataaatt cctaaattat gtttgatgac ttttagcatc
     1921 ttttttcctt gattaaatta tggttaattc tagtcttttt ttgcttaata ttaaggcaaa
     1981 ttttatataa ttttttaaaa aaatatacat taaaaatttt tattaggtaa acaaatgcaa
     2041 agcatcatac ttataggtaa gccaaatgtt ggaaaatcaa gtttatttaa cagaatggca
     2101 aggcaaagaa tagctattac aagtgaaatt tcaggtacta caagagatac caataaaaca
     2161 gaagttttta taaattcgaa aaaagcccta ttgattgata gtggtggtct tgatgaaagc
     2221 aatgagcttt ttaaaaatgt taaaaaaaac actctaaaaa ttgcaaaaca aagtgatatt
     2281 atcctttatt tggttgatgg aaaactaagt cccgatgatg aagataggca attttttcat
     2341 tctttaaaaa aattaggaaa gcctattgct ctagtaatca acaaagtgga taataaaaaa
     2401 gatgaagaaa gatcgtggga atttgctaat tttggtgtaa aagaggtttt taatctttct
     2461 gttactcata atatagggct agatgagctt tataattggc ttgagaactt tttagatgaa
     2521 caatttttaa tccctgatga ggaagaaaat ttagaagatt ttttagaaca ttatgaagag
     2581 ggaaaagaat ttcagtttaa agaactcgat caaaattata tcagagtggg tatagtaggg
     2641 cgtgttaatg tcggaaagtc aagcctttta aatgctttgg taaaacaaga gcgcagtgtg
     2701 gtgagttcta ttgcgggaac gacaattgat cctgttaatg aaagcatagt ttataaggat
     2761 aaagtgatag aatttgttga tactgcaggt attagaaagc gaggtaaaat tcaagggctt
     2821 gagcgttttg cattaaaccg cacagaaaag attttatcta attctcaaat cgcacttttg
     2881 gttttagatg ccaatgaagg ttttaacgag cttgatgaaa ggatagctgg acttgcagca
     2941 aagcattatt tgggcgtgat tattgtatta aataaatggg ataaaactga atttgaattt
     3001 gataaagtgg taaaggaatt aaaacttgat cgctttaaat ttttagctta tgcgcccgtt
     3061 gtcagtgttt ctgctttgag tggaaaaaga gtacatgttt tattagaaaa aattttagaa
     3121 gtctttacta attttacaca aaaaattcca acctcaaaac ttaatgattt aatcgcaagt
     3181 gcgactaagg ctcatccttt accgcacgat tatggaaaat tggtaaaaat ttattatgca
     3241 gtgcagtatg atttagcacc tcctaaaatc gcacttatta tgaatagacc taaggctttg
     3301 cattttagtt ataagcgtta tttacaaaat caaatcagaa aagaatttaa ctttgaaggt
     3361 gttcctttag tcattgcttc gcgcaaaaaa ggaagcaagg aaaatgatga aagttaaaaa
     3421 tattattttt attggtttta tgggtagtgg aaaaagtact atagctagag ctttggctaa
     3481 ggatttagat cttgtttttt tagatagtga tggtttgatt gagatgaaat ttgatcaaaa
     3541 aatcagtgaa atttttaaag aaaagggcga ggcttttttt agacaagaag agcaaaaagt
     3601 agcaaatttt ctttgctctt gtaatggagc ttctatagct agtggcggag gttttataca
     3661 tgttttggat tttgataaaa taggtttttg tatttattta aaagcaagtt ttgaatatct
     3721 aaaaaagcgt ttaagcgaga atgaaattgc taaaagacct ttattttatg atgaagttca
     3781 agcaaaaaga ttatataatg agcgtctaaa taaatacgag caaaaagcga atttgatttt
     3841 agatgttgaa aataaaagca ttgatgagct tgtgatagaa ataaaaaagg tgataaaatg
     3901 agagtattaa caggacttca gccaagtgga gatttgcaca taggtaatta ttttggtgct
     3961 ataaggcaaa tggtggaggc tcaagaaaaa agtgaaatgt ttatgtttat agcaaattat
     4021 catgctatga cttcaagtca agatggaaag aaattagagc aaaattcact caaagccgct
     4081 gcggcttttt taagtcttgg tatagatccg caaaaaagtg ttttttggtt gcaaagcgat
     4141 gtaaaagaag taatggagct ttattggatt ttatctcaat ttactcctat gggtttatta
     4201 gagcgcgctc atagttacaa agataaggtg gctaagggtt tgagtgcgtc acatggactt
     4261 ttttcttatc ctgttttaat ggcagcagat attttgcttt tcgatactca acttgtgcca
     4321 gtaggtaagg atcaaattca gcatgttgaa atagctcgcg atattgcctt aaaagtaaat
     4381 aatgaatggg gtgaaatttt taccttgccc gaagccaaga taaatgaaga ggtagctgta
     4441 gtcgtaggaa ctgatggggc caaaatgagt aaatcttatc aaaataccat agatatattt
     4501 gctagtcaaa aggctttaaa aaagcaaatt tcttccatag tcacagacag tacagcctta
     4561 gaagatccta aggattatca aaattgtaat gtttttaaaa tcgcaaaatt atttttaaat
     4621 gaagtagagc aaaaagaatt gcaggctcgc tatgaaaaag gtggtgaggg ttatggacat
     4681 tttaaaatgt acttaaatga tcttgtcaat gaatacttca aagaagcaag aatgaaatac
     4741 gatgagttgt tagaaaaacc ttcgcattta aaagaaattt tagaattggg tgcaagcaag
     4801 gctaggaaaa ttgctcaaga aaaaatgcaa aaaatttatg aaaaaatagg actttaagga
     4861 gtaaaaatgc ttgatttgaa aaatttacaa aataatttcg atgaggttgc taaaaagcta
     4921 caaaataaaa aagtagatga aaatatatta aaaaatcttg ccgagctttt tacaaatttg
     4981 aaaaaagaaa aagcgagttt ggaagaattt caagcttttc agaataaatt cagtaaagaa
     5041 ctagccactg cagaagataa ggaaagtttg aaggcaaaac tcagtgaaaa taaaattaaa
     5101 atcaatgagc aaaatgcaaa agtaaatgct ttggaaaatg agttagaaac cattgctcat
     5161 gctattccaa atatccctga tgaatgcgtt cctgtgggtg aagatgagga agaaaatgtt
     5221 gaaataaaaa aagttttaac accccctcaa tttgatttta ctccaaaaga acaccatgat
     5281 ttaggagaga gtttaaactg gcttgatttt gtgcgagggg taaaaatttc acaaagccgt
     5341 ttttgtgtgc ttaaaaatga aggagctttg ctaagccgtg ctttggtaaa ttatatgata
     5401 gattttaacc gaagtcgtgg gtttgaattt gtaaatgtgc cttttttggt aaatagtcct
     5461 acgatgtttg gcacaggaca gcttcctaaa tttaaagatg atatgtataa gatagaggat
     5521 gaggatttgt atttaatctc aacttctgaa attcctgtga caaatcttta tagtggagaa
     5581 attttaacga gtgaaagttt gcctattaaa atgacttgct atagtgcttg ttttagaaaa
     5641 gaagcaggaa gtgcagggcg tgacacaaga ggcattatcc gtcagcatca atttgaaaaa
     5701 gtagagcttg tgagcattac caaacctgaa caaagtgaca gtatttttaa tgaaatggta
     5761 gaatgtgcaa gtgatttact cagctcttta ggtttagctc atagacattt gatgctttgt
     5821 accggagatc taggttttag cgcggcaaag actatagatc ttgaggtatg gataccatcg
     5881 caaaataaat atcgcgaaat cagttctgtt tctaattgtc gtgattttca agcaaggcgt
     5941 gcaaaaattc gctataaaaa tgaaaaaggg aaaaatgaat tagttcatac tttaaatggc
     6001 tcttctttag cagtaggtag aactttggtt gctattatgg aaaattatca agataaagag
     6061 ggtagaattc aaattcctga tgtattgaaa aaatattttt aaagagtata aatggcagat
     6121 aaagaagata tagttcttga aaaacccgaa gatactttaa atgaaccaag acttgatgaa
     6181 agtttgggtg aatttaaagg gcaggaaggt caggctcctg aggatgaaga atttgcatct
     6241 ttaccagagg aattgcctag ggaaaatagt gatggcggtt ttaaatttac aagagaaagc
     6301 gcaccggagg aatcatcgac ttttgaagag gtgaaagaag atgagcctac tccgtggtat
     6361 aaagatcgta aatttatgtc tcttgtgggc ttgtctttgg gaatcatttg tattttggta
     6421 tttactttat tttatttaac ttttaatgaa gggaaggtta agcccgatat tatcgcatca
     6481 aagcctattg aacagcctgt ggttatgcct gatgaatcct ataattataa tgatatgaca
     6541 agagttgatg ggatgataca aaaggcaaat gcgctttatt taaagggtga agtggagcaa
     6601 gctttgaagg tttatgagca aattgccgtt tataatgaat ctttgtctaa ttataaccta
     6661 ggggtttctc aaatgaatga gggtaaattt gatgaagcct ttgatagttt taaaaaggca
     6721 atagctaatg gagaaaatca aagtgtggca gctattaatg ctgctgtttg cgctttaaag
     6781 cttaatgata aggaaaaatt taaatattat atagatttag cgcaagttta tcttcctaaa
     6841 gaaggaaaat ctaaattgta tgattattat ttggctttaa ttaattatta taagggttat
     6901 tatcccgaag ctttgcaaat gcttcaacgc gtaaattcgg aaccttacac agatgtagct
     6961 aaatatttat ccgctaaaat ttatgcaaag atggattttg atgcaaaatc tgttcaacaa
     7021 ttaaatactc aaggaagttt tgaacctagc ctttctttgg gacttttata tgcaagaatg
     7081 ggagaatacg ataaggctaa aatagcctta aatactgcaa tgaagatcga aagagatttc
     7141 aatcaaagtc tttcagcttt aactttaatt gatattaaaa caggagattt tcaagatatg
     7201 ttattgcgtt tgcaggatac atatagaaat gatgaagata agtataaaat tttagataga
     7261 tataagatca aagttcgttt aaataaagaa ctcttcaata tagccatagc gcagagaaat
     7321 ttttccaatg acatcctaaa aaaacaaaaa gatcagtttg atttactttt ttattttgcg
     7381 ccttatcaag tttttgactc aaaacaagca tcactttata taaaaaaagc caatattaca
     7441 aattttgtag atgatagttc agatggtcaa agctatttgg ctaggagtca agccttatct
     7501 tcaactaatg taaaaatttc taacattatc aatgatgcat taaatcaaaa attaagactt
     7561 gcaaataaag aattccaagc tttattggaa gattatcctg aacatagtat tttacaatac
     7621 aatcttgctt taacttatgc acaaatgcaa aattatgaac ttgcttataa gcatttttct
     7681 agctcttatc atttaaatcc taaaaattat ttagccggtg cttttgcgat gttttgcgga
     7741 aaattaagtg ataatgatac aaccaaactt tatcatgaaa ttcttgataa tattgcagca
     7801 gattcaaatt ttaaagccaa tatgcaaaaa aatatgctat ttttagctaa tggtgattat
     7861 atttctatgt tgccttattt ggatgagaat ggacaaaaaa cacccttaaa tcttattttt
     7921 gaaactatta ttgcaaaaaa taataatctt aacaatcaag tagatgtaag aattgccaaa
     7981 ttaagatcag aacttccgca agatattgtg gcaaatattt tgtattttaa ttctttaaat
     8041 tcgaatttga atattaaaga atatgctcaa aatgcccaaa ttcattttaa gaatttacaa
     8101 gttgattacc gcagtgtttt tggaggttca aatattgcta gggaattgta tgttaattta
     8161 atgcatattg caggattgtt aaatttagaa agacaaaaat ttaaaacctt gattaatacc
     8221 tctaaggtta aagatgaggg tatgatacaa actttagctt atttggatat ttttgcgcag
     8281 cagtatgagg aatcttatgc tttgtataat actctaatcg atgaatatgg agcaaaggat
     8341 tctaggactt tgtttttagc ttctgtagct gctgtgggtg cgaataatcc aaactcagct
     8401 attgctcttt tgcaactttc aaaactcaca gataagaata ataaagaaag taaggtagct
     8461 ttaggtttgc tttatcaaga agtaggtaat tacgaagcgg caatgacgca gtatagaact
     8521 ttgcctaatg attttaagag tgaatttttt acttttgata ttaaaaacca ataaggtgct
     8581 tggtatagtc caaacacctt tgtcatgctt taaggtctaa agtttttcca ccaagttcat
     8641 cgatacgatc gctaactttt tttattgtag cttcgattgt atcttggctg atttgaggaa
     8701 gctctccgcc ccaaattttt tctgcttgct caaacccttg ttttatacct tctagtccct
     8761 ttttaagctt ttcaacatcg tttccagcac ctttgatgac aaaatcagca atgcgatttg
     8821 ctgtattgtc aataccaaaa aatccctctt cactgatgag ctgattgagt tcatcagtat
     8881 tcattgtaag tggatttttt ccattataac ctaaagacgc aaagtcaata tctgaaagca
     8941 tagactttac agaatttaaa tcattgcctc ccaaaagatc attaattcca gcttgagcat
     9001 tgcttgtgtt taaaacagta ctcatggttt gttgctgaaa ttgcacaaga taaatttgac
     9061 taataccctt accgccaagt gcattgagtt tgtctaggat atcttgattt gaattggcac
     9121 tttgaacatt tgtgtctttt gtattctctg tagcgttacc atctgccttc ttattgctaa
     9181 cttgagcttg tgccatacta gcgacatttg aaaaagtatt gatttgcatt tctgctcctt
     9241 tttataatga ggctaattgt atatcgacta tttttaatta aattttagaa gtggatttaa
     9301 atagacttaa aaatttaagt ctatttaaga tagtaagcaa tttgctcttt tgcaagtatg
     9361 cgtataagat tgcttgtgcc ttctactcca gttggaaagc ctgcagtgag caaatagcac
     9421 ttctctttat tcataaaacc tttttcaacg ctagatttta cagaatctct aagtaaatcc
     9481 gttaaatcct cgcttttatt aaccaaaatg gcaggattga caccccaaac tatacttaaa
     9541 gaattcaatg ttttttcaga atgagccact gctataatct ccatatctgg acgatatctt
     9601 gaaattttaa tagcggattt tccactacta gtcaaggaaa aaatagcatc agcattaaga
     9661 tctgttgcaa gatgggctga agagcgcatg attttatctg tattgtcaag attttcaaat
     9721 tcattaaatt tgttataagg atagcgcttt tcagtttcta tgatggtttg acacatgaca
     9781 tcaactgc
//
LOCUS       DARAII010000066         9747 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.066, whole genome shotgun sequence.
ACCESSION   DARAII010000066 DARAII010000000
VERSION     DARAII010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9747)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9747)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9747
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.066"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..267
                     /gene="ribH"
                     /locus_tag="SB143_001252"
     CDS             <1..267
                     /gene="ribH"
                     /locus_tag="SB143_001252"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEF9749786.1"
                     /translation="AIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIANVSLNHNI
                     PVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEF"
     gene            267..665
                     /gene="nusB"
                     /locus_tag="SB143_001253"
     CDS             267..665
                     /gene="nusB"
                     /locus_tag="SB143_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEF9749787.1"
                     /translation="MATRHQVRQSVISLLYALEMNEKNENFIDEFLNEKKIRNEQKNF
                     TLSLYEGIIKNLDDIDKNLNPYLNENEIEKLGHIERAILRLGAYELLFTDTPNAIVIN
                     EAIELAKELANDNSPKFINGVLDTLVKAKQ"
     gene            662..1501
                     /gene="pyrF"
                     /locus_tag="SB143_001254"
     CDS             662..1501
                     /gene="pyrF"
                     /locus_tag="SB143_001254"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEF9749788.1"
                     /translation="MKLCVALDLATKEECLRLAKELKGLDLWLKVGLRAYLRDGFKFI
                     EELKKIDEYKIFLDLKIHDIPNTMADACEEISKLGVDMINIHASAGKVAMQEVMSRLN
                     RFNKRPLVLAVSALTSFDEENFYSIYKQNIDEAVIHFSKMSYQNGLDGMVCSVFESKK
                     IKEHTNSNFLTLTPGIRPFGEASDDQKRVANLTMARENLSDYIVVGRPIYKNENPRAV
                     CEKILDKIHRKNISENDIEQNYEAMQQKEWDMCNHFEEWIKTQPDKEQALKEFYTKCG
                     IKY"
     gene            1498..2277
                     /locus_tag="SB143_001255"
     CDS             1498..2277
                     /locus_tag="SB143_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749789.1"
                     /translation="MNYQQLECDYFNLYNQFISVDFQISLFEKNHKSLIKDFIFFYHQ
                     ILKQKDLNFLLGVRNKIALKVHNYMQEYSTSPKDLSLICLREHKHIEFFQRFYKALAY
                     FVAFRKKLNEEQKIKNLISNINDCFGCHFINSDFNNLQNFQKNDFFTLPEKCLQYFHL
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLIDGTFEIYELIFKEYFLLFPKDEELKDEL
                     KKIKNLEFKILMQEVSRVKLLNHYKEFCEEIFYNIELEKII"
     gene            2339..3232
                     /gene="msrP"
                     /locus_tag="SB143_001256"
     CDS             2339..3232
                     /gene="msrP"
                     /locus_tag="SB143_001256"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEF9749790.1"
                     /translation="MIVTPEKLYKQRRDFFKLGAGALIGSSLIVSKLSALNFINDTNA
                     NKLEISNEELATNYINFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPFTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIDMAKPTSEAKFIKFTTLLDKNQFPD
                     QDALFPTVEYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVIPWKYGFKSI
                     KSIVKIEFVKEQPIGTWEKYAPNEYGFYANVNPNVSHPRWSQANERALGDFFTKLTLM
                     FNGYEKEVASLYAGMDLKANY"
     gene            3232..3780
                     /locus_tag="SB143_001257"
     CDS             3232..3780
                     /locus_tag="SB143_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric reductase-like transmembrane
                     domain-containing protein"
                     /protein_id="HEF9749791.1"
                     /translation="MRTKYFKFLAYFAFLASLIYGFYHILKAFDFVKEAYIYTGVFAL
                     FFLNLSLLFSLCKFKKTKSYPKLLGIFAAFWAFLHFLNYFIFDRNANFLRLFDDISHR
                     LLEASGFFAFIIIFFMFLSSFRFFKRIEKIRKLGYVCLVLASYHYFLSPKVPMFWEWS
                     ALMLSLVYFMIRYLKFFKFKKA"
     gene            complement(3777..5489)
                     /locus_tag="SB143_001258"
     CDS             complement(3777..5489)
                     /locus_tag="SB143_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9749792.1"
                     /translation="MVRLKEFLSLKNIEESQIYKELKCSKNEALILRELCKNYVISIS
                     SINAFTLLTGIFGSEKYSYLDTLEDLKRLIERGFINQNSGFFKNIESNKSQNLILSLL
                     QSELSLSEYFLEFLEAKPRLNLDKKEAYGEYLEYLKDEFMRVELYERLSFIRSSTYSD
                     ELKAQIKLYEKHIKERLKKSKFYNILADIFKEYSLEYKEQIIFLALLKEEYTLSNENS
                     VSREMNSLLSLVSENDLEKHKNKSLLQENAPLLNLIEYDEYLNAFGDISKSFFITDEI
                     LQRIINFEPKQNKKIKIENVLKEQDIFELIEPSIDINDIIMPQNTKELLENILKQQDK
                     KVLERLNSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKTVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVESSSGSDKMHNQMQNIF
                     LEQIERFNGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKMWEKFLPRKASFE
                     KAFDVNLLANYELSGAQILMVVKNTALKVAVTEDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(5491..6312)
                     /locus_tag="SB143_001259"
     CDS             complement(5491..6312)
                     /locus_tag="SB143_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749793.1"
                     /translation="MKIGLLLCFFVSLVCAQIYKGEIYFYDLKDKQVFAIVYDNAPFV
                     PIFDRDVNQTSSSFLILSDLDTNIEIALFQTANSWEDGEKKYKISSSKELAFDNKKIQ
                     GNKLGTTTLELIKEQNNIRIKRSLDFLAHQDEIRQFRPMHNDIVSFEQIRQKPIVLKD
                     GKLSFEEWYYFYEEDNRAILELNNFVFDMDKKVFLSLNELYDVDNLKFKELLHQKLNL
                     VCDECFDDMEQVFFNNNFLITNLGLRLCYLPYENHYLNENICVDFNENEIKEFRK"
     gene            complement(6309..6791)
                     /locus_tag="SB143_001260"
     CDS             complement(6309..6791)
                     /locus_tag="SB143_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749794.1"
                     /translation="MRKIFIFFLILFFSACALKNQDYSSQKMKVVFSTPTIKINDFGF
                     LKKENKALNLEVYKLGQAFFKLKIREDICLNSVCYSKMVFNQKFFKNAYYEDILKDIL
                     EAKPLWNGKNMQKTQCGFNQNLNSANYEIFYEVCDNKISFVDRISRIKIVLMNFKDKI
                     "
     gene            complement(6802..7293)
                     /locus_tag="SB143_001261"
     CDS             complement(6802..7293)
                     /locus_tag="SB143_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEF9749795.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIEF
                     SEKDGVFKLHSSSEAKLDVLKDIVISKLIKRGINSSAIKELSRESGAMFRLNLKANDS
                     IDSENAKKINKAIKDSKLKVSSSIRGDEIRVVAKQIDDLQAVMKMVKELNLELNLSFK
                     NLK"
     gene            complement(7283..8218)
                     /locus_tag="SB143_001262"
     CDS             complement(7283..8218)
                     /locus_tag="SB143_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEF9749796.1"
                     /translation="MKIVCLDAATLGDYDLSIFKNFGEFQSYALTDRKETIERLKDAD
                     VVMTNKVVIDKEVMDACPNLKLILETATGVNNIDVEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFIFAFLNHIPYYDKWSKEGKWCDSPIFTDFGRILNSMEGKKHGIIGLGSIGKEV
                     AKISSAFGAKICYYSTSGLNQNAEFECLNLEELLRTCDIVSIHAPLNEKTKNLLTYEK
                     LKLLKDNAILVNVGRGGIINENDLAKIMDEKNIRVGLDVLESEPMIKNHPLLNIKNKE
                     NLIITPHVAWASKEAVEKLMSMVYDNLKEWIENGK"
     gene            complement(8221..9390)
                     /locus_tag="SB143_001263"
     CDS             complement(8221..9390)
                     /locus_tag="SB143_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEF9749797.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISDKLVCVSENEAN
                     AYYEAVNELYDMFVAAAQNVIDNNRFDELGIPFNLVDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWAILKQNGMDESKQFNSIYESLMDNFKRLI
                     TLEEDTQGFEEYYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFETDFSFVDEVEFS
                     EEGIFKEGVNYEYWFKLVPWEDIAIEEGELAMLLTQIMRNQKAIILNPAYTLLFQSKG
                     ILKILWELFPNHPLLLETRDVPLEGKDYVKKPVFGREGANISIIKEGKILHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(9400..>9747)
                     /locus_tag="SB143_001264"
     CDS             complement(9400..>9747)
                     /locus_tag="SB143_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749798.1"
                     /translation="EMDALIKEEAAKIDNGTSNLTKEGGQISSGGLSLGETLLASAAG
                     AILGSWIGSKLFNNQNFANQQRGAFSNQSAYQRSVNSFNKAGTAGSASSASKSGFFGG
                     GSKATSSSSSFGS"
BASE COUNT         3327 a         1668 c         1267 g         3485 t
ORIGIN      
        1 gctatagaaa gtaaaaaatt tgatgcgatt tgttgtgtgg gtgcggtcat tcgtggctca
       61 actccgcatt ttgattatgt ttcggcagaa accactaagg gcattgccaa tgtaagttta
      121 aaccacaata tccctgtaag ctttggagtt ttaacaactg atactataga acaagccata
      181 gaaagagcgg gaagcaaagc aggaaataaa ggctttgaag caatgacaac tgttattgaa
      241 atgctaaatt taagcaagga attttaatgg caacgcgtca ccaagtaaga caaagtgtga
      301 tttctttgct ttatgcccta gaaatgaatg aaaaaaatga aaattttatt gatgaatttc
      361 tcaatgaaaa aaaaatccgc aacgagcaaa aaaatttcac actgagttta tacgaaggaa
      421 ttataaaaaa tcttgatgat atagataaga atttaaaccc ctaccttaac gaaaatgaaa
      481 ttgaaaaatt aggacatatc gaaagagcca tactgcgact tggtgcctat gaattgcttt
      541 ttacagacac gcctaatgcc atagtgatta atgaagctat agaacttgct aaagaacttg
      601 ctaatgataa ttctccaaaa tttatcaatg gggttttaga tactcttgtt aaggcaaaac
      661 aatgaaactc tgcgtagctc ttgatcttgc caccaaagaa gagtgcttaa ggcttgctaa
      721 agaattaaaa ggtttagatc tttggctaaa agtgggttta agagcctatt taagagatgg
      781 ctttaaattc atagaagaac ttaaaaaaat cgatgaatat aaaatttttc tcgatcttaa
      841 aattcatgat attcctaata ccatggcaga tgcttgcgag gaaatttcaa aacttggcgt
      901 tgatatgatt aatatccatg caagtgctgg aaaagtcgct atgcaagaag tgatgtctag
      961 actcaatcgc ttcaataaaa gacccttggt gttagcagtt tcagcactta ctagctttga
     1021 tgaagaaaat ttttacagca tttataagca aaacatcgat gaagctgtga ttcatttttc
     1081 aaaaatgtct tatcaaaatg gacttgatgg tatggtatgt tcggtttttg aaagtaaaaa
     1141 aattaaagaa catacaaatt caaatttctt aaccctcact cctggaattc gtccttttgg
     1201 ggaagcaagt gatgatcaaa aacgcgttgc taatcttaca atggctagag aaaatttaag
     1261 tgattatatc gttgtgggaa gacctatata taaaaatgaa aatcctagag ctgtatgtga
     1321 aaaaatttta gacaaaatac acagaaaaaa tataagcgaa aatgatatag agcaaaatta
     1381 tgaagcaatg cagcaaaaag aatgggatat gtgcaatcat tttgaagaat ggatcaaaac
     1441 tcagcctgat aaagaacaag ctttgaaaga attttatact aagtgcggga taaaatattg
     1501 aattatcagc aattagaatg tgattatttt aatctttata atcaatttat tagcgtagat
     1561 tttcaaattt cattatttga aaaaaatcat aaaagcttga ttaaagattt tatatttttt
     1621 tatcatcaaa ttttaaaaca aaaagactta aattttttac tcggagtgag aaacaaaatt
     1681 gctcttaaag ttcataatta tatgcaagaa tactccactt ctccaaaaga tttgagtctt
     1741 atttgcttaa gagaacacaa acatattgaa ttttttcaga gattttataa agccttggct
     1801 tattttgtag cctttagaaa aaaacttaat gaagagcaaa aaattaaaaa tttgatttca
     1861 aatatcaatg actgttttgg ctgtcatttt atcaattctg actttaacaa tttacaaaat
     1921 tttcaaaaaa atgatttctt tacactgcct gaaaaatgtc ttcaatattt tcatcttgct
     1981 atgattcatc tttgttttat ggttttaaat cctttaaatt ttaaggattc taatcgacac
     2041 cttgataaag caattaacta tcttatcgat ggaacttttg aaatttatga gctcatcttt
     2101 aaagaatatt ttctattatt tccaaaggat gaagagctta aagatgaact taaaaaaata
     2161 aaaaatttag aatttaaaat tctcatgcaa gaagtttcaa gagttaaact actcaatcat
     2221 tataaagaat tttgtgaaga aatattttac aatatagagc ttgaaaaaat catataaaat
     2281 taatcctata ttaacattgt tatagtttaa taataaaaat ttttaataag gaaaaattat
     2341 gattgtaacg cctgagaaac tttataaaca aagaagagat ttttttaaac ttggagcagg
     2401 agctttaatc ggctcttctt taattgtttc caaactttct gctttaaatt ttataaatga
     2461 tacaaatgca aataaacttg aaattagcaa tgaagaactt gcaacaaact atatcaattt
     2521 ttatgaattt tcaacggata aaagaaaggc agtatcttta gcgcaaaatt ttaatactca
     2581 aaattggaaa atcgatataa gcggggaaat agaaaagcct ttcactctta gcatggagga
     2641 tattttaaaa tttcctttag aagaaagaat ttatcgtttt cgctgtgttg aaacttggtc
     2701 tatggtagtg ccttgggtgg gttttgaact acgccgttta atcgatatgg caaaaccaac
     2761 tagcgaggca aaattcatta aatttaccac tcttttggat aaaaaccaat tccccgatca
     2821 agatgctttg tttccaactg ttgagtatcc ttatgtggaa ggcttacgta tggatgaggc
     2881 tatgcatcca ctcactctac ttgcagtggg tatgtataaa aaggctttaa aaccacaaaa
     2941 tggagcacca atccgccttg ttataccttg gaaatatgga tttaaaagta ttaaatccat
     3001 agttaaaatc gaatttgtaa aagagcagcc tattggcact tgggaaaaat atgctccaaa
     3061 tgaatatggc ttttatgcca atgtcaaccc taatgtatcc catcctagat ggtcgcaagc
     3121 taacgaaagg gctttaggag acttttttac caaacttact ttaatgttta atggctatga
     3181 aaaagaagta gcaagtcttt atgcgggcat ggatttaaag gcaaattatt aatgcgcact
     3241 aaatacttta aatttcttgc ctattttgct tttttagcaa gcttgattta tggcttttat
     3301 catatattaa aagcctttga ttttgtcaaa gaggcttata tttatacagg agtttttgct
     3361 ttattttttt taaatttaag ccttttgttt tctttatgca aatttaaaaa aaccaaaagc
     3421 tatcctaagc tactaggaat atttgctgca ttttgggcat ttttacattt tttaaattat
     3481 tttatctttg atagaaatgc aaatttttta agactttttg atgatatctc tcatcgttta
     3541 ttggaagcga gtggtttttt tgcttttatc atcatctttt ttatgttttt aagctctttt
     3601 agatttttta aaagaattga aaagataaga aagttaggtt atgtatgctt ggttttagca
     3661 agttatcatt attttttaag ccctaaagtt cctatgtttt gggaatggag tgctttgatg
     3721 cttagccttg tttattttat gatacgctat ttaaaatttt tcaaatttaa aaaagcttaa
     3781 aaaccgacaa ttttgctttt atcaaaacta gaatttaatt ctttttgtat actctctata
     3841 aaatcttgca ttttaaatac tccatcttca gtcacagcta ccttcaaagc agtattttta
     3901 acaaccatta aaatttgcgc tccacttaat tcgtaatttg ctaaaagatt aacatcgaat
     3961 gctttttcaa aggatgcttt tctaggtaaa aatttctccc acattttaag cctatcttta
     4021 aaatcaggct ttttaaattc gatcttataa tcaaatcttc tcgaaaaagc actgtctaaa
     4081 ctttctaaaa agttagttgt agcaatgata acaccattaa aacgctcaat ttgctctaaa
     4141 aaaatatttt gcatttgatt atgcatctta tcacttccgc tactgctttc aacccttgtg
     4201 cttaaaaact gatcagcttc atttaaaagc aatataggac tttgtttgca agtttgaact
     4261 atgtttttgt aagtatcaaa aattttcctt acattttgtt cgctctcacc cacccattta
     4321 cttaaaattt tagaacaatc aaagctaagc actgtttttt tcatcgattt tgccatagct
     4381 agggctgaca tcgttttccc cgttccagca ggtccataaa aaataatctt tgcttctata
     4441 tttttattgc tctttatccc ccaagaattt agcctttcaa gtactttttt atcttgttgt
     4501 tttaagatat tttccaaaag ctctttagta ttttgaggca tgataatatc atttatatct
     4561 atacttggct ctataagctc aaaaatatct tgctctttta aaacattttc gattttaatt
     4621 tttttatttt gttttggctc gaaatttata attctttgta aaatttcatc tgtaataaaa
     4681 aaactcttag aaatatcacc aaaggcattt aagtattcat catattctat taaattaaga
     4741 agaggagcat tttcttgcaa taaactttta tttttatgct tttctaaatc attttcactg
     4801 actaaagaaa gtaaagaatt catctctcta gatactgagt tttcattgct tagtgtatat
     4861 tcttctttaa gaagagctag aaaaataatc tgctctttat actcaagact atactcttta
     4921 aaaatatctg ctaaaatatt ataaaattta cttttcttaa gtctttcttt aatatgtttt
     4981 tcataaagct tgatttgtgc tttaagttca tcactatatg tgcttgaacg tataaaactc
     5041 aatctctcat acagttcaac tcgcataaat tcatctttta aatattctaa atactctcca
     5101 taagcttctt ttttatccaa atttaaacga ggcttggctt ctaaaaattc taaaaaatac
     5161 tcacttaaac tcaactcgct ttgcaataaa ctaagaatta aattttggct tttattgctt
     5221 tctatatttt taaaaaagcc agaattttga tttataaaac ctctttcaat aagccttttt
     5281 aaatcctcta aagtatctaa atacgaatat ttttcactac caaaaattcc tgtcaataaa
     5341 gtaaaagcat tgatagaaga tatggaaatg acataatttt tacaaagttc tctcaaaatc
     5401 aaagcttcat tctttgaaca ctttaattct ttataaattt gactttcttc tatattttta
     5461 agacttaaaa attcctttag cctgaccatt ttattttcta aattccttta tctcattctc
     5521 gttaaaatca acacaaatat tttcattcaa ataatgattt tcataaggaa gatagcacaa
     5581 tcttaaaccc aaatttgtaa ttaaaaagtt attattaaaa aaaacttgtt ccatatcatc
     5641 aaaacattca tcgcaaacaa gattcagttt ttgatgcaag agttctttaa atttcaaatt
     5701 atccacatca taaagctcat ttaaacttaa aaaaactttt ttatccatat cgaaaacaaa
     5761 attattaagc tctaaaattg cgcgattatc ctcttcataa aaataatacc attcttcaaa
     5821 actaagcttt ccatctttta gtacgatagg cttttggcga atttgttcaa aactaacaat
     5881 gtcgttatgc ataggacgaa attgtctgat ctcatcttga tgggctaaaa aatcaagact
     5941 gcgtttgatt cttatattgt tttgctcttt gataagttca agagttgttg ttcctagttt
     6001 atttccttga atttttttat tatcaaatgc cagttcttta gaagaagaaa ttttatattt
     6061 tttttctcca tcctcccatg aatttgctgt ttgaaacaaa gctatctcga tatttgtatc
     6121 aagatcgctc agtattaaaa aactagaact agtttgatta acatccctat caaaaatggg
     6181 tacaaaagga gcattatcat aaactatagc aaaaacctgc ttatctttta agtcataaaa
     6241 ataaatttca cccttataaa tttgcgcaca aaccaaactc acaaaaaagc ataacaacag
     6301 ccctattttc aaattttatc cttaaaattc attaaaacaa tttttatacg cgaaattcta
     6361 tcaacaaaac tgattttatt atcacaaact tcatagaaaa tttcataatt tgcgctgttt
     6421 aaattctgat tgaatccgca ttgagttttt tgcatattct taccattcca caaaggcttt
     6481 gcttccaaaa tatcttttaa tatatcttca taataggcat ttttaaaaaa tttttgatta
     6541 aataccattt tgctatagca caccgaattt aaacaaatat cctctctgat tttaagttta
     6601 aaaaaagctt gtccaagttt ataaacttct aaatttaaag ccttattttc tttttttaaa
     6661 aagccaaaat cgttgatttt aatagttggt gtgctaaata caaccttcat tttttggcta
     6721 gaataatctt gattttttaa agcacaagca ctaaaaaaca aaattaaaaa aaagataaaa
     6781 atttttctca acactcttaa cctattttaa atttttaaaa ctaagattta attctaaatt
     6841 aagctcttta accattttca tcacagcttg caaatcatca atttgctttg caactacacg
     6901 aatttcatct cctcgtatag aagagcttac ttttagctta ctatctttaa tagccttatt
     6961 gattttctta gcattttcac tatcaatgct atcattggct tttaaattta aacgaaacat
     7021 cgctccactt tcgcgcgaaa gctctttaat agcacttgaa ttaatacctc ttttgataag
     7081 ttttgaaatc acaatatctt ttagaacatc aagctttgcc tcacttgaag aatgaagttt
     7141 aaaaacacca tctttctcgc taaattcaat ttcacactta atacctttta aatcatagcg
     7201 agaatcaagc tctttttttg cttgctcaaa agcattttta agctcttgtt tatccaaagc
     7261 cgctgaaata tcaaaactat gttcacttgc cattttctat ccattctttt aaattatcat
     7321 aaaccataga catcaatttt tccaccgctt ctttgcttgc ccaagccaca tgtggagtaa
     7381 tgatgagatt ttctttattt ttgatattta agagaggatg attttttatc ataggttcac
     7441 tctctaaaac atcaagtcct acgcgtatat ttttttcatc cattattttt gccaaatcat
     7501 tctcattaat gattccgccc ctgcctacat tgaccaaaat cgcattatct tttaaaagtt
     7561 ttaacttctc ataagtaagc aaatttttcg ttttttcatt taaaggagcg tgaatgctaa
     7621 caatatcgca agttcttaaa agctcttcca aatttaagca ttcaaattcg gcattttgat
     7681 tgagtccgct tgttgaataa taacaaattt tagccccaaa agcactagaa attttagcca
     7741 cttctttacc tatactgccc agtcctataa taccgtgctt ttttccttcc attgaattta
     7801 aaattctacc aaaatctgta aagatagggc tatcgcacca tttgccctct ttgctccatt
     7861 tatcatagta aggaatatga tttaaaaaag caaaaataaa tgcaaaagta tgctgaacta
     7921 cgctcatagt agaatatcca gcagcatttt taacgataat gcccttttct ttagcatatt
     7981 caacatcgat attatttaca cccgtagctg tttctaaaat aagctttaaa ttagggcaag
     8041 catccataac ttctttatca ataacaactt tatttgtcat aaccacatcc gcatctttta
     8101 aacgctctat ggtttctttt ctatctgtta aagcataact ttgaaattct ccaaaattct
     8161 taaaaatact taaatcataa tcccctaaag ttgccgcatc taaacaaaca attttcattt
     8221 ctaatccttt ataatatgtc ctacaaattt agaataatta tcaagcacaa gtcctccttt
     8281 tctaaatcct aagccacacc cttcataagc aaagaaaaca cctgcttgat agtattcgtt
     8341 ttcacatgaa ttaaactcta catattcttg ataaatagcc ttattattcc cataaggacc
     8401 tacattctca tgtaaaattt taccttcttt gattatacta atatttgccc cttctctacc
     8461 aaaaacaggt tttttcacat aatcttttcc ctctaaagga acatctcgtg tttctaaaag
     8521 taatggatga tttgggaaaa gttcccataa aatttttaaa attcccttag attgaaataa
     8581 aagcgtataa gcaggattta aaataatagc tttttgattt ctcatgattt gcgttaaaag
     8641 catggctagt tcgccctctt ctatggctat atcttcccaa ggaacgagct taaaccaata
     8701 ttcataattt acaccctctt taaaaattcc ctcttcgcta aattctacct catctacaaa
     8761 agaaaaatct gtttcaaatc ctgcttcatt tgcaatatga gcaagtaatt ttgtagtgat
     8821 ttcttcctct ttacttcctg ccacacttga aaaaagaatt ttccatcctt gataatattc
     8881 ttcaaagcct tgagtatcct cttcaagggt aatcaatctt ttaaaattat ccatcaagct
     8941 ttcataaatg ctattaaatt gcttactttc atccatgcca ttttgcttta aaatcgccca
     9001 ttgtaaaatc gcactttcaa aaagagcagt gggggtatct gcattaaatt ctataagctt
     9061 tataggcttg ccatcaagtc cacccgctaa atcaaaacgg ccatataaat gccaatgaac
     9121 ctcattttcc caactcattt taatagcatc aacaagatta aaagggattc caagctcatc
     9181 aaaacgatta ttatctataa cattttgtgc tgcagctaca aacatatcat aaagctcatt
     9241 gactgcctca taataagcat tggcttcatt ttcacttaca catactaatt tatcacttat
     9301 ataatcactt ccatcttcat ctgtatgcca agaaaaacct atattttcta aataatcttt
     9361 ttgaagtttg tctacttgta gtaattgcat tatttatcct taagagccaa aagaagaact
     9421 agaacttgtg gctttagagc ctccaccaaa aaaacctgat tttgaagcac ttgaggcaga
     9481 gcctgctgtg cctgccttgt taaaactatt aacacttctt tgataagcac tttgatttga
     9541 aaaagcgcct cgttgttgat tggcaaaatt ttgattatta aagagcttag agcctatcca
     9601 gctacccaaa attgcacccg cagcacttgc aagtaaggtc tctcctaagc ttaatcctcc
     9661 actgctgatt tgaccgccct ctttagtcaa atttgaagtt ccattatcaa tcttagctgc
     9721 ttcttctttg atgagcgcat ccatttc
//
LOCUS       DARAII010000067         9577 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.067, whole genome shotgun sequence.
ACCESSION   DARAII010000067 DARAII010000000
VERSION     DARAII010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9577)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9577)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9577
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.067"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..332)
                     /locus_tag="SB143_001265"
     CDS             complement(<1..332)
                     /locus_tag="SB143_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEF9749799.1"
                     /translation="MNSKTKLIHCGRGDQNVEVRSVNPTLMRASTILFKDHATWQKYR
                     ELRKTDRVLSYGARGTTTNFELEKLICSLEGGYRAQLFPTGLAALAMVLLNYASKDAH
                     FLITDAIYG"
     gene            complement(344..1783)
                     /gene="dcuC"
                     /locus_tag="SB143_001266"
     CDS             complement(344..1783)
                     /gene="dcuC"
                     /locus_tag="SB143_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HEF9749800.1"
                     /translation="MLGIVFSLFSIFLLVFMLYKKINAHMALLLSGLLLLSLAAIFGL
                     SPHIVAKGSLNLGFFDIFQVFNQTMSNTLAGLGLTLMTIAGFSAYMDHVGASYALFKV
                     FEKPLKAVKSPYVLLIVAYFIVQFLVLFIPSHAGLALLLMVTMYPILVRSGVSKLSAL
                     SVIAICQYIDHGPGSGNVIMASKVAEVDPAIYFVHYQLPTTLPIIIAVGIAIYLCNKF
                     FDKKDNFVFNAQEIEKELNENEGKEKELKKPPRIYAILPIIPLVLILGFSSVLDSILV
                     LMGISSAQEVKAAASTAIKMNVPVAMVISTFVAIIFEMIRYKSIVETLNSIMIFFKGM
                     GHLFVITVSLIVCGQVFASGLLSVGFVDTLIEFCKNAGFGVLAIIIAVSILLAVCAFL
                     MGSGNAAFFSFAPLIPNIAKHFGIETITMIAPIQIMTGFGRCVSPIAPAILAISAIAK
                     VSPFAVVKRTAIPMLVAAIVNIIMTYIYL"
     gene            complement(1787..2149)
                     /locus_tag="SB143_001267"
     CDS             complement(1787..2149)
                     /locus_tag="SB143_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEF9749801.1"
                     /translation="MSNYPKAIGPYSAYREANGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            2325..2993
                     /locus_tag="SB143_001268"
     CDS             2325..2993
                     /locus_tag="SB143_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEF9749802.1"
                     /translation="MDEKQKEQFIKLTNFLGQVLGKQYEVVFHVLSKEGAYIAAIANS
                     HVSGRTLESPLSAFASELVQNKAYLKEDFLCDYKALIGKSKLVRGSTFFIKNSDELVG
                     ILCINHDTSMMRDLVCRIIDIEKLGDMSEFLNQDKENNTSVDSLGNIETLSHSIEEIL
                     AQSIDMNYLNSDYQLSMAQKEEITKTLYQKGIFNIKGSVPIVARLLKISEPSVYRYLK
                     NFKS"
     gene            complement(2997..3464)
                     /locus_tag="SB143_001269"
     CDS             complement(2997..3464)
                     /locus_tag="SB143_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEF9749803.1"
                     /translation="MMTLSLEEEKRFAELCKMAFNFARNNEYENLKIMIEAGLNVNLK
                     THKGDTLLMLAAYNNSYECAKMLLEKGALVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYSFAIMFGRKDVAEFLLKSSKKSLSKRLSLGILKLFKK"
     gene            complement(3521..4945)
                     /locus_tag="SB143_001270"
     CDS             complement(3521..4945)
                     /locus_tag="SB143_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEF9749804.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSAAYGEIKITADLSAYTKAKIFQKGEVTPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTLQGI
                     KNLSNKEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDADKLGFNPFDLT
                     KIWPHSVVPLMDIGEMILNQNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRSRSEVNTYNVAGAMNFDSYRNGAAYYEPNSYEESPKEDK
                     SYLEPDLVLEGNAQRYAPLDNDFYTQPRALFNIMNQNQKEQLFENIAASMEGVEEKII
                     TRALGHFEKISPDYAQGVKKALGK"
     gene            5132..5449
                     /locus_tag="SB143_001271"
     CDS             5132..5449
                     /locus_tag="SB143_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEF9749805.1"
                     /translation="MSVLVIGADEITPIKAVLYDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLDKEFSCS
                     KVK"
     gene            5449..6144
                     /locus_tag="SB143_001272"
     CDS             5449..6144
                     /locus_tag="SB143_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749806.1"
                     /translation="MLFGFDDKREFIPRVYSSLCKQELVKTFLIQYNASIDSALRIPL
                     SYAKSAKDLKMPFQNFLQDVIHTPFGKIKNIDKNLTLNISYFQKRKSLIFKTKIFQNV
                     DILRLLRAYFRGICFDAQVLFDFYVYDKISHQNQNRSIVQNDNLIIIDNKIAVLPLCK
                     EVDLQNLNIDNEIQKISKFIYQNQFEQIYIVCPRNKKFTHFIQIKHFLCDLNKTMLKL
                     VPYSITNKLIRRK"
     gene            6144..6635
                     /gene="fldA"
                     /locus_tag="SB143_001273"
     CDS             6144..6635
                     /gene="fldA"
                     /locus_tag="SB143_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEF9749807.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVLNVADIDAAKINSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAE
                     NLKNAGANLVGEVSTDGYTFESSDAVVDGKFVGLALDNDNQEDQTEARIDAWVEQIKA
                     HFA"
     gene            6602..7480
                     /locus_tag="SB143_001274"
     CDS             6602..7480
                     /locus_tag="SB143_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEF9749808.1"
                     /translation="MGRTNQSSFCLIFKNIGFLCRYCIVFLILTIPLFSKPDQKITPI
                     IEKAKDYFFIEKDLKLTHYHTSYRIFVAKSKIKYKKYKVIYLLDGNAFFSRFLNLYNY
                     LPKEDILIVGIGYDSPLAFDTTHRTKDYTPKVQGLEFQNGGGSFEFRQFIKTELLPYI
                     NTHYETSEDFQILFGHSFGGLFALDTLFNDTKLFSHYFIISPSLWWGGSEFIPKRISL
                     SNCPQIYMALGSAESNSSIKKAKAKISVKELGMQILNHSACEVEFKLFENETHGSVIE
                     KAMIWAIENIKSEPID"
     gene            complement(7485..9146)
                     /locus_tag="SB143_001275"
     CDS             complement(7485..9146)
                     /locus_tag="SB143_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEF9749809.1"
                     /translation="MKDFVFIQNENLIPLPDEINIWENCKDEEVLISNEKAQKAQIYA
                     PEINFYLKSSQDEILEKSKNILKLYEARANVYDLGLDLEQNKEVKNRIILVDSDDTMA
                     DFLKKQNFKIISLKNEEILAVFGSIGELCAVILNQGEEVEIDFDILLFNTNSNDIRKD
                     FTRQSGCYNISNFKNQESLLKFLQDKSPKYTYKTYITYDSSVCQYHERRSEHCAKCAE
                     ICPTIAILKDDENKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFELCEFYKEK
                     KILIIPKKMSLENLNIKLPKDVLPFMIEGEKWLSSMHFLTLLQSSGANLVFYTDFISR
                     GSAEAIDLLNTFFERKFQKEAIFTAKDEKELQNALGKQEFIENLSFDFHNNTLTTREN
                     FAKRMQNLIQNDDFGVKESGEWLRYGKIEINANTCTLCLSCVGACNVGALIADTKENA
                     LKFNASLCTTCGYCEVSCAEKDTLKLTRSGMEFNPNYFEYQTMAKDELFACIECGKEF
                     ATKKAVEKIANLMKPKFGNDESKIKTLYCCADCKAKVMIEAMRKG"
     gene            9216..>9577
                     /locus_tag="SB143_001276"
     CDS             9216..>9577
                     /locus_tag="SB143_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEF9749810.1"
                     /translation="MNKFRTFPQIGSLIDDESLKEYPFYLRSYFCKSVIAKLKANISE
                     DLLDKNTILEKIQQEIQKHLRKDLQSVINATGVVIHTNLGRSVIDESIFEKSKDVLCN
                     YANIEFDLESGKRGSRYA"
BASE COUNT         3228 a         1455 c         1532 g         3362 t
ORIGIN      
        1 ccatagattg catcagtgat taaaaaatgt gcgtctttac tagcatagtt taaaagtacc
       61 atagcaagtg ctgcaagtcc tgttgggaaa agttgagctc tgtagccgcc ttctaagctg
      121 cagataagtt tttcaagttc gaagttagtt gtcgttcctc tagcaccata gcttaataca
      181 cgatcagttt ttcttaattc tctatatttt tgccaagtgg catgatcttt aaaaagtatg
      241 gttgatgcac gcataagtgt aggattgact gatcttactt caacattttg atcacctcta
      301 ccgcaatgaa taagtttggt ttttgagttc attttgtctc cttttaaaga taaatataag
      361 tcataatgat atttacaata gccgctacaa gcataggaat agctgttctt ttaactacag
      421 caaaaggact tacttttgcg atagctgaga tagctaaaat agcaggtgct atagggctca
      481 cacatcttcc aaagcctgtc atgatttgaa taggtgctat catggtgata gtttcaatgc
      541 caaaatgttt tgctatattt gggataagtg gggcaaagct aaaaaatgct gcatttccag
      601 aacccattaa gaaagcacaa actgcaagta aaattgaaac tgcgatgatg atagcaagta
      661 ctccaaatcc tgcattttta caaaattcta ttaaggtatc tacaaagcca accgataaaa
      721 gcccgcttgc aaatacttga ccgcatacta tcaaagaaac agtgataaca aataaatgtc
      781 ccattccttt aaagaaaatc ataatagaat taagagtttc tactatactt ttatagcgta
      841 tcatttcaaa aataatagcc acaaaagttg aaatcaccat tgctactgga acattcattt
      901 taatggcagt actagcagct gctttaactt cttgggcact acttattccc attaaaacca
      961 agatgctatc aagcacggaa ctaaatccta ggattaaaac caaaggaatt ataggtaaaa
     1021 tcgcataaat tctaggaggc tttttaagtt ctttttcttt accttcattt tcatttagtt
     1081 ctttttcaat ttcttgtgca ttgaagacaa aattatcttt tttgtcaaaa aatttattgc
     1141 aaagatatat cgcaatacct acagctataa tgataggcaa ggttgtaggg agttgataat
     1201 gaacaaaata aattgcagga tcaacttcag ctacttttga cgccatgatc acatttccac
     1261 ttccaggtcc atgatcgata tattgacaaa tcgcaatcac acttaaggca gaaagttttg
     1321 aaacaccaga gcgtacaagt ataggataca tagtaaccat aagtaaaagt gctaagcctg
     1381 cgtgagaagg gatgaaaaga actaaaaatt gcacgataaa ataagcaact atgagtaaaa
     1441 cataaggaga ttttacggct tttaaaggtt tttcaaaaac tttaaaaagt gcataagaag
     1501 cccctacatg atccatataa gcagaaaaac ctgctatagt cataagtgta agtccaagcc
     1561 ctgctaatgt atttgacatg gtttgattga aaacttgaaa aatatcaaaa aaacctaaat
     1621 ttaaagaacc tttagcgaca atgtgtggag aaagtccaaa aatagcagct aaggaaagta
     1681 aaagtaaacc acttaaaagc aaagccatat gagcattgat ttttttataa agcataaaaa
     1741 caagtaaaaa aatactaaat aaagaaaaaa caatacctag catgttttat cctttttgag
     1801 cgatgatctc tatctctact ttagcttttt ttggcagatc ttttactgca aaagcacttc
     1861 ttgctggata aggagcttta aaaaattcag cataaatttc attaaatgct acaaaatcat
     1921 taatatcagc taaaaagcaa gtggttttaa tcactttatc ataactgata ccattttctt
     1981 ctaagatagc gccgatattt tttaaagatt gtttggtttg ttctttgata tcagagcttt
     2041 ctatttctcc tgaagcaggg ttgataggaa gttgtcccga gataaaaagc aagccgtttg
     2101 cttctctata agctgagtaa gggccgatag cctttggata atttgacatt ttctctcctt
     2161 ttttattaat gtaaattaaa taaacgtatt ttatcacgat aataataatt tgtcaatatt
     2221 ttattatcac gataatgaaa tattatcttt aagaatattt ttaaaaaatt aaagttaaaa
     2281 tttaagcttt ggattctaaa ttttattatt ttaggaatat tttcatggat gaaaaacaaa
     2341 aagagcaatt tataaagctc acgaattttt taggacaagt tttaggtaag cagtatgaag
     2401 tggtttttca tgttctttct aaagagggtg cttatatagc agctattgca aatagtcatg
     2461 tcagcggtag aactcttgaa tctcccttga gtgcttttgc aagtgaactt gtgcaaaata
     2521 aggcttattt aaaagaagat tttttgtgtg attataaggc tttgattgga aaatcaaaac
     2581 ttgttagagg ttcgacattt tttataaaaa attctgatga attggtagga attttgtgta
     2641 tcaatcacga tacgagcatg atgagagact tggtttgtag gattatagat atagaaaaat
     2701 taggcgatat gagtgaattt ttaaatcaag acaaagaaaa taataccagt gtagatagtt
     2761 taggaaatat agaaacccta agtcattcta tagaagaaat tttagctcaa agcattgata
     2821 tgaattattt aaattcggat tatcaactta gcatggcaca aaaagaagag attacaaaaa
     2881 ctttatatca aaagggtatt tttaatatca agggttctgt gcctatagtg gctagactct
     2941 taaaaatttc agagcctagt gtctataggt atttaaaaaa ttttaaatca tagaaattat
     3001 tttttaaata attttaaaat tcctaaagaa aggcgtttac ttaggctttt tttagagctt
     3061 ttgagtaaaa actcggctac atctttacgg ccaaacatga tagcaaaact ataaggtgtc
     3121 atacctaagc cattattttc atctatattt gctccatatt ttactaaaag ctcgcacata
     3181 ggcaaatagc ccttaaagca aactcctgct aaaggtgttt gtcctcgatc atttttttca
     3241 tcaacaagcg cacccttttc taaaagcatt tttgcgcatt cgtaagaatt attataagct
     3301 gcaagcataa gcaaggtatc gcctttatgt gtttttaaat tcacattcag tcctgcttct
     3361 atcatgattt taagattttc atattcgtta tttctagcaa aattaaaagc cattttgcaa
     3421 agctcggcaa atcttttttc ttcttctaag ctaagtgtca tcatcgtttt tcctttgttt
     3481 ataatcttta gtttgccacc taaaaagtgg caagtaaaaa ttattttccc aaagcttttt
     3541 taacaccttg tgcataatca ggtgaaattt tttcaaaatg tcctaaagct ctagtaatga
     3601 ttttttcttc tacaccttcc atagaagctg ctatattttc aaaaagttgt tctttttggt
     3661 tttgattcat gatgttaaac aacgctcttg gttgagtgta aaaatcatta tctaaaggag
     3721 catatctttg cgcattacct tctaaaacta aatcaggctc aagatagctt ttgtcttctt
     3781 ttgggctttc ttcatagctg tttggctcat aatacgcagc accatttcta tagctatcaa
     3841 aattcatagc acctgcaaca ttgtaagtat ttacttcact tctagaacga tttacaggta
     3901 aaagatgata attagttcct attctatatc tttgtgcatc aggatatgag aaaattctag
     3961 cttgtagcat tttatcagga ctaaaaccta taccaggtac tatattgctt gggctaaaag
     4021 ctgcttgttc tacttcatta aaataatttt gtggattttg atttaagatc atttcgccta
     4081 tatccattaa aggcactacg ctatgtggcc aaattttagt taaatcaaaa ggattaaagc
     4141 ctagtttgtc agcatctttt tcagcaagaa tttgaacttg aactttccat tttgggaaat
     4201 ctttattttc tatagcattg taaagatctc tttggtggct ttctctatct ttggcgataa
     4261 gttcagcggc ttctttattg ctaagatttt taataccttg tagggtttta aaatggaatt
     4321 tcacccaaaa tctctcgttt ttgtcattga taaagctata agtatggctt ccaaaaccat
     4381 gcatatggcg ataacttgcc ggaattcctc tatcgctcat aagaatagtt acttggtgta
     4441 agctttcagg acacaaactc caaaaatccc aagcggcatt attacttctt aagtgcgttc
     4501 ttggatctct tttttgagtg tggataaaat caggaaattt ataagcatca cggatgaaga
     4561 atgttggggt attgtttcct actaaatccc agtttccttc tttggtataa aatttaatag
     4621 caaaacctct aacatcgcgt tcagcatcgg ctgcacctgc ttcgccagct actgttgaaa
     4681 aacgcaaaaa caatggagta acttcacctt tttgaaaaat tttagctttg gtataagcac
     4741 ttaaatctgc tgtaattttt atttcgccat aagctgcgct tccttttgca tgcactgttc
     4801 tttctggaat tctttctcta ttttgatgag caagtttttc aagtaaaaga taatcttgca
     4861 taagtaaagg gccttttgca cctgcactta aagagttttg attatcggct ataatgtttc
     4921 cgaagtcgtt agttaatttt ttcattattt tctcctaaat aataattttt attagttgag
     4981 aaattatatc tattaaaaat taaaattagc tgaattaata taaattaata aaaaatatta
     5041 atgataataa atttcaaaat aaatttagtt tgattatatt ataataataa ttatcaaaat
     5101 aatttaaaat aaaaatcaca aaggagagct tatgtcagtt ttggttattg gtgcagatga
     5161 aataacacct attaaggctg ttttgtatga tttaggtgca aaaaaaatag agcattggga
     5221 tgcgcgcaat gaaaatagag tcaatcgcaa acctattcct tgtgatacag aatgtatagt
     5281 aatgcttacg agtttcttaa atcacaatac tatgaaaaaa attaaaaacg aggctaaaaa
     5341 acgaaaaatt ccattagttt gcgcaaaaag aagcgtaagt tgcgtgtatt gtgagtattg
     5401 taagatattt aatttagata aagaattttc ttgctctaag gttaaataat gctatttgga
     5461 tttgatgata aaagagaatt tatccctcgg gtttatagtt ctttgtgcaa gcaagagctt
     5521 gtcaaaactt ttttgattca atacaatgct agtattgata gtgctttaag aatcccgctt
     5581 tcatatgcaa aaagtgcaaa ggatttaaaa atgccttttc aaaacttctt gcaagatgtg
     5641 atacatacgc cttttggcaa gataaaaaat atcgataaaa atcttacttt gaacatttct
     5701 tattttcaaa aaagaaagag tttgattttt aagactaaga tatttcaaaa tgtcgatatt
     5761 ttaaggcttt taagagctta ttttagagga atttgttttg atgcgcaagt tttatttgat
     5821 ttttatgtat atgataaaat ttctcatcaa aatcaaaatc gaagcattgt tcaaaatgat
     5881 aatttgatta tcatagataa taaaattgcc gttttacctc tttgcaagga agtggatctt
     5941 caaaatttaa atatcgataa cgaaattcaa aaaatatcta aatttatata tcaaaatcaa
     6001 tttgaacaaa tctacatagt ttgtccgcgt aacaaaaaat tcacacattt tattcaaata
     6061 aaacattttt tatgcgattt aaataaaact atgttaaaat tagttccgta ttcaataaca
     6121 aataaactta taaggagaaa ataatgtcag tagcagtaat ttatggaagt gctatgggaa
     6181 atacagaagg agcagcaaat acaatcgctt caaaattagg aattagtgat gttttaaatg
     6241 ttgcagatat tgatgcagct aaaattaatt cttatgataa attaatttgt ggaacttcta
     6301 cttggggaag tggtgattta caagatgatt gggatggttt tgatttttca ggtcttagcc
     6361 ttggtggaaa aactgtagct gtatttggaa tgggtgatag tgaaagctat tcagacactt
     6421 tctgcggcgg tatgggaaaa cttgcagaaa atttaaaaaa tgcaggcgca aatttagtag
     6481 gtgaagtttc aactgatggc tatacatttg aatcaagcga tgcagttgtt gatggaaaat
     6541 ttgtaggtct tgcacttgat aatgacaatc aagaagatca aactgaagca agaattgacg
     6601 cttgggtaga acaaatcaaa gctcattttg cttaattttt aaaaatatcg gctttctttg
     6661 ccgatattgt attgtatttt taattttaac tattccactt ttttcaaaac cagatcaaaa
     6721 aattactcct attatagaaa aagcaaaaga ttactttttt atagagaaag atttaaaatt
     6781 aacgcattat catacaagtt atcgaatttt tgtggcaaaa agtaaaataa aatataaaaa
     6841 atataaggta atttatttgc ttgatggcaa tgcgtttttt tcgagatttt taaatcttta
     6901 taattatttg cctaaagaag atattttaat tgttggcata ggttatgata gccctttggc
     6961 gtttgatact acccatagga caaaagatta tactcctaag gttcaaggtt tggaatttca
     7021 aaatggagga ggtagctttg aatttagaca atttatcaaa acagagcttt taccttatat
     7081 taatacacat tatgaaacca gtgaagattt tcaaattctt tttggacatt cttttggcgg
     7141 actttttgct ttagatactt tatttaatga tacaaagctt tttagccatt attttattat
     7201 ttcaccttct ttgtggtggg gtggtagtga atttatacct aaacgaattt ctttatcaaa
     7261 ttgtcctcaa atttatatgg ctttaggttc ggctgagagt aattctagca ttaagaaagc
     7321 taaagctaaa ataagtgtta aagaacttgg tatgcaaatt ttaaatcata gtgcttgtga
     7381 agttgaattt aaactttttg agaatgaaac tcatgggagt gtaatagaaa aggctatgat
     7441 ttgggctata gaaaatatca aatcagagcc aattgattga ttatttatcc ttttctcatt
     7501 gcttctatca ttacctttgc tttgcagtct gcacaacaat aaagggtttt tatcttgctc
     7561 tcatcattgc caaatttagg cttcatcaaa ttcgcaattt tttctaccgc ttttttagtg
     7621 gcaaactctt ttccacactc tatgcaagca aaaagttcat cttttgccat ggtttggtat
     7681 tcaaaatagt tgggattaaa ttccattcca ctacgcgtaa gttttagagt atctttttca
     7741 gcacaactta cttcgcagta tccacaggtg gtgcataatg aagcattgaa tttaagtgca
     7801 ttttctttag tatcagcaat caaagctcct acattacagg ctcctacgca agaaaggcag
     7861 agagtacagg tatttgcatt gatttctatt tttccatatc ttaaccattc gccactttct
     7921 tttacgccaa aatcatcatt ttggatcaaa ttttgcattc ttttggcaaa attttctcta
     7981 gtagtaagag tgttattgtg aaaatcaaaa cttaaatttt ctataaattc ttgctttcct
     8041 aaagcatttt gcaattcttt ttcatcttta gcggtaaaaa tagcttcttt ttgaaatttt
     8101 ctttcaaaaa aagtatttaa aagatctatt gcttcagcac ttcctcgtga aataaaatcc
     8161 gtgtaaaaaa ccaaatttgc accactgctt tgcaaaagag ttagaaaatg catagaagaa
     8221 agccactttt caccttctat cataaaaggc aaaacatctt tgggtagctt tatatttaaa
     8281 ttttctaaag acattttttt aggtatgatt aaaatctttt tttctttata aaattcacaa
     8341 agttcaaaaa aactttccct aggcatgggt gcataatcaa gcgaaccact agggcacacg
     8401 ctgatacagc ctccacagcc taggcaatct acttgagaaa attctaaatg cttgttttca
     8461 tcatctttta aaatagctat cgtagggcaa atttcagcac actttgcgca atgctcactg
     8521 cgtctttcgt ggtattgaca tacgctagaa tcataggtaa tataggtttt gtatgtgtat
     8581 tttgggcttt tatcttgtaa aaatttcagt aaactttctt gatttttaaa attgctaata
     8641 ttataacagc cactttgtct tgtaaaatcc ttgcgaatgt cgttagaatt tgtattaaaa
     8701 agtaaaatat caaaatcaat ttctacttct tctccttgat ttaaaatcac agcacaaagc
     8761 tcgcctatgc tgccaaatac tgctagaatt tcttcatttt ttaagcttat gattttaaag
     8821 ttttgttttt ttaaaaaatc agccatagta tcatcagaat ctactaaaat aatgcggttt
     8881 tttacttctt tgttttgttc taaatcaagc cctaaatcat agacatttgc cctagcttca
     8941 taaagtttta atatattttt acttttttct aaaatttcat cttgtgaact tttaagataa
     9001 aaattgattt ctggagcata aatttgtgct ttttgtgctt tttcattaga aattaaaact
     9061 tcttcatctt tgcaattttc ccaaatattt atctcatcgg gcaagggaat aagattttca
     9121 ttttgtatga aaacaaagtc tttcattgat tttccttgat ggtcaatttg ccaaattcta
     9181 tggtaaaata accaaatatt ttcttaaggc ttaagatgaa caaatttaga acttttccac
     9241 aaattggaag cttgattgat gatgagagtt taaaagaata tcctttttat ttaagatctt
     9301 atttttgcaa aagtgttatc gctaaactca aggcgaatat aagcgaagat ttgctagata
     9361 aaaatactat tttagaaaaa atacagcaag aaattcaaaa acatttacgc aaagatttac
     9421 aaagtgtcat taatgctacg ggtgtggtta ttcatacaaa tttggggcgt agtgttattg
     9481 atgagagtat ttttgaaaag tccaaagatg tgctttgtaa ttatgctaat atcgaatttg
     9541 acttagaaag cggtaaaaga ggaagtcgtt atgcctt
//
LOCUS       DARAII010000068         9441 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.068, whole genome shotgun sequence.
ACCESSION   DARAII010000068 DARAII010000000
VERSION     DARAII010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9441
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.068"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            37..714
                     /locus_tag="SB143_001277"
     CDS             37..714
                     /locus_tag="SB143_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HEF9749811.1"
                     /translation="MKFTAVIPVKADSSRLPRKNIKPFGNENLLTRKIRQVKISNIAD
                     RIIVSSDSEEMLQMARNMGVEAILRPKDLADESKPFSDFLDYITKLIPEGHLVWACAT
                     SPFFDEQLMMQAKQEYLKALTEGHDSLIAVYKFKHYMLDENGPLNYKLGLAHQNSQDL
                     PPLDFFTNGIIMAPIISVAKWHYHYGPNAYRFIVDQKASIDIDTKYDYLTALAWLDED
                     KLMGGGN"
     gene            775..1503
                     /gene="kdsB"
                     /locus_tag="SB143_001278"
     CDS             775..1503
                     /gene="kdsB"
                     /locus_tag="SB143_001278"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEF9749812.1"
                     /translation="MKILGIIPARYGSTRFPGKPLADILGKPMIWWVYNQAKKAKKLT
                     DLIVATDDERIMRACDQFDIPNIMTNIHENGISRVHEVSQKIKADLYVQINGDEPLIE
                     SRIIERIIPRVIGRDFVANLICKIKSPNELLDLSNIKIIFDKNKKAIYMSRTPIPTPY
                     KSLEFEYYKHIGVLAYTKSMLDFFALSKPSKYEKIEGLEILRFVEYGKDFYCIEVKNF
                     KSLSVDTPKDLEKIKNNLKNKKRL"
     gene            1530..2645
                     /locus_tag="SB143_001279"
     CDS             1530..2645
                     /locus_tag="SB143_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEF9749813.1"
                     /translation="MHNYKFLLLSGNDLVGIKFQKYFKRYFPNQLQIFDCDEQFLSIM
                     RNDIFEKTEYIIINSLESKKENVKKIVGYFSRFSKIIIIQKSIRNTYRTFKNITLIKI
                     SNFIGFNDRVNEIQSFASAEVLIDYFIESIVEGVKHGHILVKYDSFNSKIISQRQKFC
                     SLRLLYQGDPNENIFLQNVGNFRIKLGEILADYLNIGDLNDIDYIVPVPSSGIFYAVG
                     LSKALKIPMLPALKKIQISERAFEIQDVDTRKRYLYNNMEINSELIKNKNIILVDEAI
                     FTGATLKVVCDILKDCDVSKIHLAIPSPKCFLQCDYLVQPKRILLLKKINERYLSNYF
                     NVNSVNFLPLEQYAKILNKIDNNICYECFLKEKRCLL"
     gene            2633..3268
                     /locus_tag="SB143_001280"
     CDS             2633..3268
                     /locus_tag="SB143_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749814.1"
                     /translation="MFTVIIPIRQKDEQLEIAKCNNFSLLERKINCFKKNSLISEIIV
                     ASNSLEIREYVSNFDVKFYFRKEEEVQDNLEEFIINLIQNIENPYVIWTSCMNPFIDE
                     KIFSEAIDEFLNLDFAIYDSLITCGKLDKFILDENGALNFKTGHYHIHSSSLPKFYYL
                     VNGCFIISKNLMEKYRYPWGKVPYKKILEHKFTFEIKDTNDFLFFKQILDK"
     gene            3281..4270
                     /locus_tag="SB143_001281"
     CDS             3281..4270
                     /locus_tag="SB143_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-2-ketovalerate aldolase"
                     /protein_id="HEF9749815.1"
                     /translation="MNKIKILDCTLRDGAHVNKGNFGKENILLILQKLAEASIDLIEV
                     GFLQNAIFDKDSSIFDSIEYIDEVLEEINKVKSSFGVMLRTDRCDFEKIKKTKNIDFI
                     RMALYKEHLQDIKKYTSKAKDLGYSVYLNPIGVTKYSLGEIKNILQELVVLHPEGISI
                     VDTFGSLTNEEFSKFLLLFDEIIPSDIEIGIHLHENLSSSLSLALQAIKTLSHRNIII
                     DSSVLGMGRIPGNLPTELLVSHLQNSRYHIDSLYSLIDIIREYKKINEWGYNPIYVHS
                     AVINIDRTYPEYFFEQGFSTYDNIKLQKLVKANGYGEKFNSTYAQEIISKYEI"
     gene            4260..4901
                     /locus_tag="SB143_001282"
     CDS             4260..4901
                     /locus_tag="SB143_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEF9749816.1"
                     /translation="MKYELILFDLDGTLVDSASGVIKSIDYTIDFLSLPQLSEEEKKA
                     LVGLPIFNSFKERYKMDDCSAEHATKIFRDIYRKDFLYDASLYKNVAPTLGRLRDCRY
                     KLAIASYKKDDYCRLLLKYLQVDKMFDFIQGSNSNNKLTKTDIIRHCIKKFNIALDKI
                     LMVGDTAHDALGAENVGIDFVGVSYGFGNKNELYNYKNIAIIDDIEKIFDVLS"
     gene            4907..6934
                     /locus_tag="SB143_001283"
     CDS             4907..6934
                     /locus_tag="SB143_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEF9749817.1"
                     /translation="MKFHTTSKKLIKNVKDFYKIVLYKAYKSIGKEDVFVGWGRKNSG
                     LKAIALAKKHHAKFMLLEDGFLRSLNLGVENSPSFSIVKDDVGIYYDASTPSRLENIL
                     NTYEFSPKELAWAKKAIELIKKEKLSKYNNNLCIPQELFSANEERVLIITQVANDASL
                     RFGLASDFSTQDIINDALKENPNAKIYIKIHPDVLSGKKQSDFSMQDLPSRCVILKEN
                     YNPIELLSHFKKVYTKTSGMGFEALILGCECVCYGMPFYAGWGLTQDKLECKRRVKKR
                     SLEEVFYAAYILYSEYFNPYLNQKSDIFDTIHTLAKYKKIEQVNSHTLYFLGFTLWKR
                     WFMKPFFKAKNNKIIFLNSLDELYKANLNSEDKIFIWGKKYDKALLAKDFNNEIFLVE
                     DGFLRSVFLGSDLTRPFSLIVDSKGLYVDPNHPSDLEELLQNHEFDDNLRQRAKKLIT
                     TITQNKFSKYNGLKHEKLDFNTNKKIILIPAQVEDDASMILGGADFDTLKLLQSVRKA
                     NENAFIVFKPHPDVLSGNRKGLKDKDIILKYCDEIIENVSIDSAINACDEVHTITSTS
                     GFDALLRGKKVVVYGKPFYAGWGLTQDLHHISRRTRVLSLEELVAGVLILYPRYIHPK
                     SKNLCEVELALDTMLALQKDYFSKRWLKILIDFRILMLRKIRRIGEVFIKR"
     gene            6931..8112
                     /locus_tag="SB143_001284"
     CDS             6931..8112
                     /locus_tag="SB143_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEF9749818.1"
                     /translation="MKFSDKIKKEFSGKTVLLLQGPVGTFFHRLAIKMKKNKTKVFKL
                     NFNGGDFLFYPSGKRCKCDEKDLENFYENFFKEKKIDAIVMYNDCRLIHAKAIKVAKE
                     LGIGIWIFEEGYLRPYCITFEKDGVNANSSLPRDKNFYLSCNILTKESIKEIPGGFKF
                     MAFSAFLYWLFSFLLAPFFNNKLHHRTLFPFEFLFWFRSLYRKYLYKLTEKKLNQKIY
                     SLEKKYFLAILQVYNDTQIKHHYKKSIEEFIEELILSFANHARAKSYLVFKHHPMDRG
                     YRNYSKLINELSQKYHVEGRILYVHDTYLPTLLKKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYNFEGLAYPKKLQFFWREAHAYKPNPSLVINFKNYLLNTNQFNGNFYKNSFL
                     G"
     gene            8181..9302
                     /locus_tag="SB143_001285"
     CDS             8181..9302
                     /locus_tag="SB143_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEF9749819.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHRFDFKAEISGIE
                     KNENFPSFKIDCKDVQTRYHFLTWNDIVKKNWSQSYKDALMDCYSFFRIYTITGLFLK
                     FGKESIYQLVTGYYPFFYVIFSLLLSLDLALGSFVFLQNHIPSFLAIVIGIVLGFLLN
                     RFLFKLGRKLAVFWIARICAFCATWKEKRLGAMEQRIKLFADEILKSLKQNENRQDYE
                     LILVAHSVGTIVCIEVLEHILKQNLDKRVLDKLKILTLGECIPLTSYQKNADDFRKKL
                     EFVSAFDLKWYDYTSIIDGACFPQVDFFRTSGVQANFTPPFLSAKFHTLYEKNEYKKI
                     KRDKNKAHFLYLYSPHIKGSYDFFAFVVAPKFLEEKVKI"
     gene            9299..>9441
                     /locus_tag="SB143_001286"
     CDS             9299..>9441
                     /locus_tag="SB143_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEF9749820.1"
                     /translation="MSQCPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMP"
BASE COUNT         3405 a         1154 c         1623 g         3259 t
ORIGIN      
        1 aatcaaacta gaatttaaga ataaaaagga gaaaaagtga aatttacagc agtgattcct
       61 gttaaagctg atagttcaag acttcctagg aaaaatatca agccttttgg caatgaaaat
      121 ctacttacta gaaagataag acaggttaaa atctcaaata tagcagatag aattatcgta
      181 agttccgata gtgaagaaat gctacaaatg gctagaaata tgggcgtaga agccatatta
      241 agaccgaaag atttagcgga tgaaagtaaa ccttttagtg attttttaga ttatattaca
      301 aagttgattc ccgaaggtca tttagtttgg gcttgtgcaa cttcaccttt ttttgatgaa
      361 caattaatga tgcaagcaaa acaagagtat ttaaaagctt tgacagaggg tcatgattct
      421 ttgattgctg tttacaagtt taaacattat atgcttgatg aaaatggccc attaaattat
      481 aaattaggtt tggcacatca aaattcacaa gatctacctc ctttggattt ttttacaaat
      541 ggtataatta tggctccaat tatctctgtg gccaaatggc attatcatta tggaccaaat
      601 gcttatagat ttatagtgga tcaaaaagct tctatagata ttgatacaaa gtatgattat
      661 ttgactgctt tagcttggct ggatgaagat aagcttatgg gggggggtaa ttgataaatg
      721 ctttacgcag tatctagctc atccctatgg tttattgaca ttaaaggttg cctaatgaaa
      781 attttaggca ttataccggc aagatatgga tcgacaagat ttccaggaaa acctttggca
      841 gatattttgg gaaaacctat gatatggtgg gtatataatc aggcgaaaaa agctaaaaaa
      901 ttaacagact taattgtagc tacagatgat gagaggatta tgagagcatg tgatcaattt
      961 gatataccaa atataatgac aaatattcac gaaaatggta tttcaagagt acatgaggtt
     1021 tcgcaaaaaa taaaagctga tttgtatgta caaattaatg gcgatgagcc tttgattgaa
     1081 tcaaggataa ttgaacgtat tattccgaga gttatcggta gagattttgt tgcaaattta
     1141 atttgtaaga ttaaatcccc aaatgaactt ttagatctaa gtaatataaa aattattttt
     1201 gataaaaata aaaaagctat ttatatgtct agaaccccta tacctactcc ttataaaagt
     1261 ttagagtttg agtattataa acatattgga gttttagcat atacgaaatc aatgctagat
     1321 ttttttgcct tatcgaaacc atcaaaatat gaaaaaatag aaggtttaga aattttaaga
     1381 tttgttgagt atggtaaaga tttttattgt attgaagtaa aaaattttaa atccttatct
     1441 gtagacacac caaaagattt ggagaaaatt aaaaataatt taaaaaataa aaaaaggctt
     1501 taaaatgtat ataatttttt ggaatattaa tgcataatta taaatttcta ttgcttagtg
     1561 gtaatgattt agtgggaata aaatttcaaa aatattttaa aagatatttt cccaatcaat
     1621 tacaaatttt tgattgcgat gagcagtttt tgagcattat gcgaaacgat atttttgaaa
     1681 aaacagaata tattattatt aattctttgg agtcaaaaaa agaaaatgtt aaaaaaatag
     1741 taggttattt ttcccgattt tctaaaatta tcattattca aaaatcaata agaaatacct
     1801 atagaacatt taaaaatatt actcttatta aaatttcaaa ttttattggt tttaatgata
     1861 gggtgaatga aattcaaagt tttgcaagtg cagaggtttt gattgattac tttatagaaa
     1921 gcattgttga aggtgtaaaa catggtcata ttttagttaa atatgatagt tttaactcaa
     1981 aaattatatc tcaaagacaa aaattttgtt ctttaaggct tttatatcag ggagatccca
     2041 atgaaaatat ctttttgcaa aatgttggaa attttcgtat aaagttaggg gagatattgg
     2101 ctgattatct taatataggc gatcttaatg acattgacta catagttccg gtgccttcta
     2161 gtggaatatt ttatgctgta ggcttgtcaa aagccttgaa aattccaatg ctacctgcgc
     2221 ttaaaaaaat tcaaatcagc gagagggctt ttgagattca agatgtggat acacggaaaa
     2281 gatatttgta taataatatg gagataaatt ctgagttgat taaaaacaaa aatattattt
     2341 tggttgatga ggctattttt acaggagcta ctttgaaagt ggtttgcgat attttaaaag
     2401 attgtgatgt ttctaaaatt catcttgcga tcccatctcc aaaatgtttt ttgcaatgtg
     2461 attatttggt tcaacctaaa agaatcttgc ttttaaaaaa gattaacgaa agatatttgt
     2521 caaactattt taatgtaaat tctgttaatt ttttacctct agaacaatat gctaaaattt
     2581 taaataaaat cgataataat atatgctatg agtgtttttt gaaggagaag agatgtttac
     2641 tgtaataatt ccaattagac aaaaagatga acagttagaa attgccaaat gtaacaattt
     2701 cagtttatta gaaagaaaga ttaattgttt taaaaaaaat agccttatta gtgaaatcat
     2761 tgttgctagt aattctttgg aaataagaga atatgttagt aattttgatg taaaatttta
     2821 ttttagaaag gaagaagaag tacaagataa tttagaagaa tttattataa accttattca
     2881 aaatattgaa aatccatatg ttatatggac atcttgcatg aatcccttta tagatgaaaa
     2941 aattttttcc gaagcgatag atgaattttt aaacttagat tttgctattt atgattcttt
     3001 aattacttgt ggaaaacttg ataaatttat cttagatgaa aatggagctt taaattttaa
     3061 aactggacat tatcatattc attctagtag tttgcccaaa ttttattatc ttgttaatgg
     3121 atgttttatt ataagtaaaa atttaatgga aaaatatagg tatccttggg gtaaggtacc
     3181 atataaaaag attttagaac ataaatttac ctttgaaatt aaagatacaa atgatttttt
     3241 attttttaaa caaattttag ataaataagg aagataaaca atgaataaaa ttaaaatatt
     3301 agattgtaca ttaagggatg gggcgcatgt taataagggt aattttggca aagaaaatat
     3361 ccttttgata ttgcaaaaat tagcagaggc aagcatcgat ttgattgagg ttggttttct
     3421 gcaaaatgct atttttgata aagactcatc catatttgat tctattgagt atattgatga
     3481 agttttagaa gagataaata aggtcaaaag tagctttggg gtgatgcttc gaacagacag
     3541 gtgtgatttt gaaaaaataa aaaaaactaa aaatatagat tttataagaa tggctttata
     3601 taaggaacat ttacaagata taaaaaaata cacttctaaa gctaaagatc taggatattc
     3661 tgtatattta aatcctatcg gtgttacaaa atattctttg ggggaaataa aaaatatatt
     3721 acaagagctt gttgttttgc atcctgaagg tatttcaatt gtagatactt ttggctcttt
     3781 aacgaatgaa gaattttcaa aatttctttt acttttcgat gagataatcc caagtgatat
     3841 tgagataggt attcatttgc acgagaattt atcctcatct ctttctcttg ctttgcaagc
     3901 tataaagaca ctttctcata gaaatattat tattgactct tctgtattgg gtatggggag
     3961 aattcctgga aatttgccga cagaattact agtttctcat ttacaaaata gtcgctacca
     4021 tatagattct ttatattctt taattgatat tattagggag tataaaaaga ttaatgaatg
     4081 gggatataat cctatatatg tacactctgc agtgataaat attgatcgaa cttatccaga
     4141 atattttttt gagcaaggat tttcaactta tgacaatatt aaacttcaaa agttagtcaa
     4201 agcaaatggc tacggagaaa aatttaattc tacttatgca caggaaatta tttcaaaata
     4261 tgaaatatga attaatatta tttgatttag atggtacttt ggtagattcg gctagcggtg
     4321 ttattaaaag catagattat actattgatt ttttaagttt accacagttg tctgaagaag
     4381 aaaaaaaagc tcttgttgga cttcctattt ttaattcttt taaagaacgg tataaaatgg
     4441 atgattgtag tgctgagcat gctaccaaaa tttttagaga tatatataga aaggattttt
     4501 tatacgatgc tagtttgtat aagaatgtag ccccaactct tggcagattg agagattgta
     4561 ggtataaatt ggctattgct tcgtataaaa aagatgatta ttgtaggtta cttttaaaat
     4621 atttgcaagt agataaaatg tttgatttta ttcaaggttc gaattctaat aacaagttaa
     4681 caaaaacaga tataatacga cattgtatta aaaaatttaa tattgcttta gataaaatac
     4741 taatggtcgg agatactgca cacgatgctt taggtgctga aaatgtagga attgattttg
     4801 tgggtgtttc ttatggtttt ggaaataaga atgaattata taattacaaa aatatcgcaa
     4861 ttatcgatga tatagaaaag atttttgatg tattaagtta attagaatga aattccacac
     4921 cacttcaaaa aaacttataa aaaatgttaa agatttttac aagatagtct tatataaggc
     4981 ctataaaagc ataggtaaag aagatgtttt tgtaggctgg ggcagaaaaa attcaggttt
     5041 aaaagctata gctctagcca aaaaacatca tgctaaattt atgcttttag aagatggctt
     5101 tttgcgctca ttaaatttag gcgtagaaaa tagtccgagt ttttctatag ttaaagatga
     5161 tgtggggatt tattatgatg cgagcactcc ttcaaggctt gaaaatattt taaataccta
     5221 tgagtttagc cccaaagagc tagcttgggc aaaaaaagcc atagagctta ttaaaaaaga
     5281 aaaactcagc aagtataata acaatctttg catacctcaa gagcttttca gtgccaacga
     5341 agagcgcgtt ctaatcatca ctcaagtggc aaatgacgct tcacttcgat ttggtttggc
     5401 aagtgatttt tcgacccaag atatcataaa tgacgcccta aaagaaaatc caaatgctaa
     5461 aatatatatc aaaatccatc ctgatgtgct aagtggtaaa aaacaaagtg attttagcat
     5521 gcaggatttg cccagtagat gcgtgatttt aaaagaaaat tataatccca tagaactgct
     5581 aagtcatttt aaaaaagtct atactaagac ttcaggtatg ggttttgaag ctttgatatt
     5641 aggatgcgaa tgtgtgtgtt atggtatgcc tttttacgca ggatgggggc taactcaaga
     5701 taagctagag tgcaaaagaa gagttaaaaa aagatcttta gaagaagttt tttatgctgc
     5761 ttatatctta tacagcgagt attttaaccc ctacttaaat caaaaaagtg atatttttga
     5821 tactattcat actttagcaa agtataaaaa gatagagcaa gtaaattctc atactttata
     5881 ttttttaggc tttactttat ggaagcgttg gtttatgaag ccatttttta aagccaagaa
     5941 taataaaatc atttttttaa actcacttga tgaactttat aaagcgaatt taaattccga
     6001 agataaaatc ttcatttggg gtaaaaagta tgataaagct ttgctggcca aagattttaa
     6061 caatgaaatt tttttagtag aagatggctt tttgcgctcg gtttttttag gttcagatct
     6121 tacgcgtcct ttttctttga tagtagatag taaaggtttg tatgtagatc ctaatcaccc
     6181 tagcgattta gaagaacttt tgcaaaatca tgaatttgat gataacctaa gacaaagagc
     6241 caaaaagctc atcactacca taacgcaaaa taaattttca aagtacaacg gcctaaagca
     6301 tgaaaaactt gactttaata caaataaaaa aatcatttta attcccgctc aagtagaaga
     6361 tgatgcttcg atgatcttag gtggagcaga ttttgacacc ttaaagcttt tgcaaagcgt
     6421 aagaaaggcc aatgaaaacg cctttatagt ttttaaacct caccctgatg ttttaagtgg
     6481 aaatcgcaag ggtttaaaag ataaggatat tattttaaaa tactgcgatg aaatcataga
     6541 aaatgtcagc atagacagcg ccataaatgc atgtgatgaa gtacatacta tcacttctac
     6601 tagcggtttt gatgctcttt tacggggcaa gaaagtagtg gtttatggaa agccttttta
     6661 tgcaggttgg ggtttgactc aagatttgca ccacatctca agacgcacaa gagtgcttag
     6721 tttagaagag cttgtggcag gagttttgat cctttatcca agatatattc atccaaagag
     6781 taaaaattta tgtgaagttg agcttgcttt ggatacaatg ttagctttgc aaaaagatta
     6841 tttttcaaaa agatggctaa aaattttaat tgattttaga attttaatgc ttagaaagat
     6901 aagaagaata ggtgaagttt ttataaaaag atgaaattta gcgataagat taaaaaagaa
     6961 tttagcggta aaactgtctt gcttttacaa ggacctgtag gcactttttt tcaccgcctt
     7021 gctataaaga tgaaaaaaaa taaaaccaaa gtttttaagc ttaattttaa tggaggggat
     7081 tttcttttct atccaagcgg aaaaaggtgc aagtgcgacg aaaaggatct tgaaaatttc
     7141 tatgagaact tttttaaaga aaaaaagata gatgctattg tgatgtataa tgattgtcgt
     7201 ttgattcatg caaaagctat caaagtagct aaggagcttg gcattggtat ttggattttt
     7261 gaagaggggt atttaaggcc ttattgtatc acttttgaaa aagatggggt caatgcaaac
     7321 tcctccttgc ctcgcgataa aaatttctat ctttcttgca atatccttac aaaagaaagc
     7381 ataaaagaaa ttccaggtgg ttttaaattt atggctttta gtgctttttt gtattggctt
     7441 ttttcttttc tgctagctcc tttttttaac aacaagcttc atcatcgcac cttatttcct
     7501 tttgaatttt tattttggtt tagatcttta tatagaaaat atctttataa actcacagaa
     7561 aaaaaactta atcaaaaaat ttatagcctt gaaaaaaagt actttttggc tattttgcaa
     7621 gtttataatg atacgcaaat taagcaccat tataaaaaaa gcatagaaga atttatagaa
     7681 gagcttatcc tttcttttgc aaatcacgca agagcaaagt cttatcttgt ctttaaacat
     7741 catcctatgg acaggggata tagaaattat tctaaactga taaatgagct aagccaaaaa
     7801 taccatgtag aaggaagaat tttatatgtg cacgatactt atttacccac tcttttaaaa
     7861 aaggctttgg gttgcatcac gattaattct acagtgggtt taagtgctat tttagagggt
     7921 tgtcctacta aggtttgtgg aaatgcattt tacaattttg aaggcctagc ttatccaaaa
     7981 aaacttcaat ttttttggcg cgaagctcat gcttataaac ccaatcctag cttggttata
     8041 aattttaaaa attatctttt aaatacaaat caattcaacg gcaattttta caaaaattcg
     8101 tttttaggtt gataaaagtc cgattaagac agcttttaaa acaaaatgtt ataatcaatc
     8161 taaaaaagaa atgaattttt atggatagag aagtatttta tatagcgggc tatgatccta
     8221 agagttatag attttattat gatttattta agaaaaattt aaaagattat tctcatagat
     8281 ttgattttaa agcagagata agcgggattg aaaagaatga aaactttcct tcttttaaga
     8341 ttgattgtaa agatgttcaa acacgctatc attttttaac ttggaatgat atagttaaaa
     8401 aaaattggtc tcaaagttat aaagatgctt tgatggattg ttatagtttt tttagaattt
     8461 ataccattac tgggcttttt cttaaatttg gtaaagaatc gatttatcag ctagttacgg
     8521 gttattatcc tttcttttat gttatttttt ctttgttatt atctttagac ttagctttgg
     8581 gaagttttgt ttttttgcaa aatcatatcc cttctttttt ggcgattgtt ataggtatag
     8641 ttctaggatt tttactcaat cgttttttat tcaagctagg tagaaaattg gctgtatttt
     8701 ggatagcaag gatatgtgct ttttgtgcta cttggaaaga gaaaagattg ggggctatgg
     8761 agcaaaggat aaagcttttt gcagatgaaa ttttaaagtc tttaaaacaa aatgaaaaca
     8821 ggcaagatta cgaacttatc ttagtagctc acagtgttgg aaccatagtt tgcatagaag
     8881 ttttagagca tattttaaaa caaaatttag ataaaagagt attggacaaa ttaaaaattc
     8941 ttacactagg agaatgcatt cctttaacaa gctatcaaaa aaatgcagac gattttagaa
     9001 aaaaacttga atttgtttct gcatttgatt taaaatggta tgattatact tcaataatcg
     9061 atggggcgtg ttttccacaa gtggattttt tccgcacaag cggggtgcaa gctaacttta
     9121 ccccaccgtt tttaagtgct aaatttcata ccttgtatga aaaaaatgaa tataaaaaaa
     9181 tcaaaagaga taaaaataaa gcacattttt tatatcttta tagtcctcat attaaaggga
     9241 gttatgattt ttttgctttc gttgtggcac ctaaattttt agaagaaaag gtaaagatat
     9301 gagtcagtgt ccattttttc ccaaacccta taaaaataaa gcttcaacac ttttaacctt
     9361 tttattaaaa cgcagatcat ggcttgatgg tctttatgag cgtagctata aaatgcaaac
     9421 aggttatgta aaaatgccaa a
//
LOCUS       DARAII010000069         9354 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.069, whole genome shotgun sequence.
ACCESSION   DARAII010000069 DARAII010000000
VERSION     DARAII010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9354
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.069"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..323)
                     /locus_tag="SB143_001287"
     CDS             complement(<1..323)
                     /locus_tag="SB143_001287"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1445 domain-containing protein"
                     /protein_id="HEF9749821.1"
                     /translation="MNPKELREKIAKGEIKEQTSGMALGYAQANLVILPKEYAKDFQT
                     FCMLNPKPCPLLEIVHGKFTQKIAKNANIYTDIPKYFIYENGIKTKEAYDISEYYNDD
                     LIGFLL"
     gene            complement(332..1297)
                     /locus_tag="SB143_001288"
     CDS             complement(332..1297)
                     /locus_tag="SB143_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEF9749822.1"
                     /translation="MSIKVIEASINSTIQDLGRKNYAKLGIARSGVMDELSLRIANIL
                     LGNKQDEAGLELCLKGGKYEFLDESYFVLSGAEFEAKLNNKKIQTCKVYQAKKGDILE
                     LGLAKIGFRGYLCVAGGFKIKSFLNSKSSDVKMGVGVFNGRALQKDDVLELNNSFIPF
                     NLSKRECENPVFQFAKEPTIRVILGTNDDAFTQNGLNTFLNTSYKIGLKSDRMAIYAE
                     AKTTIEHKNSADIISDPAVFGSIQVPKNGLPIILMAGRQSTGGYTKIASVIENDLPLL
                     AQAKLGTNFKFENISMQNALELYKQREEKFKTLDKKINLDFENLI"
     gene            complement(1278..2018)
                     /gene="pxpB"
                     /locus_tag="SB143_001289"
     CDS             complement(1278..2018)
                     /gene="pxpB"
                     /locus_tag="SB143_001289"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEF9749823.1"
                     /translation="MFSVHFSGSKAVLLRFKQEISPQINALVLSTEARIQKGINENEI
                     YGIDELVSAYSSLLIYFNPCVLSLNSLLDFLEKIKKDIKITEKKSNLCIKVPLCYDEE
                     FGLDLEFVCKYHNLSKEELINLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLASPR
                     TKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFNKEDEKNPTLLKAGMLLKFKA
                     ISKDEFYDIKEQVLKKAYQKEIYEYKSH"
     gene            complement(2020..3189)
                     /locus_tag="SB143_001290"
     CDS             complement(2020..3189)
                     /locus_tag="SB143_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent metal cation transporter"
                     /protein_id="HEF9749824.1"
                     /translation="MINKTALLGAAFLMATSAIGPGFLTQTATFTGSLLASFGFVILV
                     SIILDIGAQLNIWRIIGISGKRGTEVANMVLPNLGYFVAFLIALGGFFFNIGNIAGAG
                     LGLNIVLGISVENAAVISAIIAIGIFIFKKAGELMDKFIVLAGFVMIVLTAYVAFASK
                     PPIGEALFRTFIPTQIDVISIVTLVGGTVGGYIVFSGAHRLIDAKLYGKENLNYINKA
                     AVSGIIITGIMRVILFLAVLGVVSSGFILDKENPAGSVFHHALGDLGLKIFGVVLFLA
                     AISSVIGAAYTSVSFIRSFHPWIEKYNRFVVIFFIIVSTLVFYILGKSPASILIIVGT
                     INGWILPITLFIMIIAAHKKSVVGDYKHPKWMSAFGLLIVALMSYLSVLSMIKLM"
     gene            complement(3211..3981)
                     /locus_tag="SB143_001291"
     CDS             complement(3211..3981)
                     /locus_tag="SB143_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEF9749825.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDKTLNLAKQNNVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     DMKIQHFKAHGALYNMAVLDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLTKEQIQIKALNDFIN"
     gene            complement(4121..4930)
                     /locus_tag="SB143_001292"
     CDS             complement(4121..4930)
                     /locus_tag="SB143_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEF9749826.1"
                     /translation="MKKIISLALALTLSASAAELKMATTTSTDNTGLLDALKPLYEQE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFIKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEAKKFINWLTSDDTLSFISGFKLLYKPLFVVDAKTRKD"
     gene            5011..5697
                     /locus_tag="SB143_001293"
     CDS             5011..5697
                     /locus_tag="SB143_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9749827.1"
                     /translation="MDYILEGFTQALFLLFNADESVISAIKTTLFSSSISIVLSLIVG
                     FPLGFALGFFEFKLKRFIKLIVDTSLSFPTVAVGLILYALISSRGPLGDLGLLFTVKA
                     LILGQFVLALPIVIALFSNLIENMNKKHFLLIKSLHLSTLKLVMTIIYELRFALVSVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLIFIAFIL
                     NFIIHKLKRY"
     gene            5698..6693
                     /locus_tag="SB143_001294"
     CDS             5698..6693
                     /locus_tag="SB143_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749828.1"
                     /translation="MIELCNFKFNYGQKNILNIKHLCLDTDKISILMGSNGSGKSTLL
                     RILKFLEGEFDNITYFGNKHLNSDEKRQIYLLFPEPVFLNRSVEKNFYFLLKTYKLDS
                     KEIKKRLNEVLNLLEIDRSLLKKYPSELSSGQGQKIAFALALSVRAKYYLLDEPSAFL
                     DKDTMILFKKAILYMQKTYKSGFLIASHDKNFLDFLAQKKYYLHAGEILEFENTNIFE
                     LENKGVNFSNFIDFSMCKNYICKDEISNKIAIDPYKISFLYPDDFSKQTFDFTLQKCI
                     IIALRTRKEFVFIRVECGGKILEFALESERFKQEKLSLYQELCLVFNEEAICFLN"
     gene            6834..8807
                     /gene="acs"
                     /locus_tag="SB143_001295"
     CDS             6834..8807
                     /gene="acs"
                     /locus_tag="SB143_001295"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEF9749829.1"
                     /translation="MRYQNTQGLFKPNKQLSRNARIKNLCEYYDLCDEVREDFEGFWK
                     RQALEKIDWFSPFSRVLNDDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAAIVFEGE
                     MGDYEVYTYRRLLHEVCKAANLLKRFGVKKGDRVIIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYVKGRDYIYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQVSKFYTSPTAIRMLHADAPDEPKKYDLNTLEVLGTVGEPINP
                     SAWQWFYENIGNSKCSIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNVKDVAEDGLLCITKPWPSMIRGIWGDENRYIESYFSQAKKEGKPVYFSGDGAFY
                     DDNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSVLDAIKGESLFAF
                     VVLNPTSSCDLGGAIETLKELNDILRAEIGPIAKIEKILYTTGLPKTRSGKIMRRILR
                     TIARGEELKQDISTLEDSGVVQSIIDAAKTGIQ"
     gene            8915..>9354
                     /locus_tag="SB143_001296"
     CDS             8915..>9354
                     /locus_tag="SB143_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase"
                     /protein_id="HEF9749830.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKALPKEMLPILTKPLIHYGVDEAL
                     EAGMDNMGFVTGRGKRALEDYFDISYELEHQISGTNKEYLLKDIRSLIYRCTFTFTRQ
                     NEMRGLGDAVLKGRPLAGDEAFGVILADDLCINEEGVNVMAQMV"
BASE COUNT         3032 a         1497 c         1550 g         3275 t
ORIGIN      
        1 agtaaaaaac ctatcaaatc atcgttataa tactcgctta tatcgtaagc ttctttagtt
       61 tttatcccat tttcatagat aaaatatttt ggaatatcgg tgtaaatatt tgcatttttg
      121 gcaatttttt gagtaaattt accatgtact atttctaaaa gtgggcaggg ttttggatta
      181 agcatgcaaa aggtttgaaa gtctttagcg tattctttgg gtaaaatcac caaatttgct
      241 tgtgcgtagc ctaaggccat gcctgaagtt tgttctttta tctcaccttt tgcgattttt
      301 tctcttagtt cttttggatt catctttatc cttaaatcaa attttcaaaa tcaagattga
      361 tttttttatc caaagtctta aatttttctt ccctttgctt ataaagttct aaagcatttt
      421 gcatgctaat gttttcaaat ttaaaatttg ttcctaattt cgcttgtgca agcaaaggca
      481 agtcattttc tataacagag gctatttttg tataacctcc agtgctttgt cttcctgcca
      541 ttaaaatgat aggtaggcca ttttttggca cttgaatact tccaaaaacc gcaggatctg
      601 aaataatatc ggctgaattt ttatgttcta tcgtagtttt agcttctgca taaattgcca
      661 ttctatcgct ttttaagcct attttataac tagtatttaa aaaggtattt aagccatttt
      721 gcgtaaaagc atcatcattt gtgcctaaaa taacacggat agtgggttct ttagcaaatt
      781 gaaaaacagg attttcgcat tctctttttg atagattaaa ggggataaag ctgttattta
      841 gttctaatac atcatccttt tgcaaagctc ttccattaaa taccccaaca cccattttta
      901 catcgcttga ttttgaattt aaaaagcttt ttatcttaaa tccacccgct acgcatagat
      961 agcctcgaaa acctattttt gctaaaccaa gttctaaaat atcacccttt tttgcttgat
     1021 aaactttgca agtttgaatt tttttattat ttaatttagc ttcaaattct gccccgctta
     1081 atacaaaata gctttcatct aaaaattcgt attttccacc ctttaaacaa agctcaagtc
     1141 ctgcttcatc ttgtttattt ccaagtaaga tatttgcaat ccttaaagaa agttcatcca
     1201 tcacaccgct tcttgctatg cctaatttag cataattttt acgcccaaga tcttgtatgg
     1261 tggaatttat agaagcttca atgactttta tactcataaa tttccttttg ataagccttt
     1321 tttaaaactt gttctttaat atcgtaaaat tcatcttttg aaatggcctt aaattttaaa
     1381 agcattcccg cttttaaaag tgtaggattt ttctcatcct ctttgttaaa aaattccaaa
     1441 ggagttctag caatgatttg ccaaccgcct gggcttgaaa tcggataaac tcctgtttgc
     1501 ttatcggcaa tacctacact tcctgcctca attttagttc tagggcttgc aagtcttggg
     1561 gtaaaaagtc tttcatcaag tcctccaaga tagggaaaac ctgccataaa tcctagcata
     1621 aaaacaagat aatagggttt tgtgtgaaga tttatcaatt cttccttgga aagattgtga
     1681 tatttgcata caaattctaa atcaagccca aattcttcat cataacaaag tggaacttta
     1741 atacagagat tggatttttt ctccgttatt ttaatatcct ttttgatttt ttccaaaaaa
     1801 tcaagtaaag aatttaagga taatacgcaa ggattaaaat aaataagcaa gctagaataa
     1861 gcacttacaa gctcatctat gccataaatt tcattttcat ttatgccttt ttgaattcta
     1921 gcttctgtac ttaaaaccaa agcattaatt tgaggtgaaa tttcttgttt aaagcgcaaa
     1981 agcaccgctt tacttccact aaaatgtacg ctaaacattt tacattaact ttatcataga
     2041 aagtacagat aaataagaca tcaaagccac gatcaaaagc ccaaaagcac tcatccattt
     2101 aggatgttta tagtctccaa ctacgctttt tttatgcgct gcaattatca ttataaatag
     2161 ggtaataggc aaaatccaac cattgatcgt cccaacgatg attaatatac ttgcaggaga
     2221 ttttccaagt atataaaaaa ctaaagttga aacaataatg aaaaaaatta ccacaaagcg
     2281 gttatatttt tcaatccaag ggtgaaagga tcttataaaa gatacagaag tgtaagcagc
     2341 cccgataact gatgaaatag cagctaaaaa tagtactacg ccaaagattt ttaagcccaa
     2401 atcccctaaa gcatgatgaa atactgaacc agcaggattt tctttatcca gtataaaacc
     2461 agaactaact actcctaaaa ctgctaaaaa caaaatcaca cgcatgattc ctgtgatgat
     2521 gattccgctt actgcagctt tattaatata gtttaaattt tcttttccat aaagctttgc
     2581 atctataagt ctgtgcgcgc ctgaaaatac tatatatcca cccactgttc cgcctactaa
     2641 ggttactata gaaataacat caatttgtgt aggtataaag gttctaaaaa gagcttcgcc
     2701 aatgggaggt tttgaagcaa aggctacata agcagtaagt acaatcatca caaaacctgc
     2761 taaaacgatg aatttatcca tcaattcccc agctttttta aagataaaaa taccaatagc
     2821 gataatagcg ctaataactg ctgcattttc tacgctaata cctaatacta tatttaatcc
     2881 aagcccagct cctgctatgt ttcctatatt gaagaaaaag ccacctagtg caattaaaaa
     2941 agctacaaaa tagcccaaat tgggtaaaac catattggct acttcagttc ctctttttcc
     3001 acttatccct ataatgcgcc aaatattaag ctgtgctcct atatccaaaa taatagaaac
     3061 aagtattaca aaaccaaaac tagccaataa gcttcctgta aatgttgctg tttgggttaa
     3121 aaatccaggg ccaatagcag aggttgccat caaaaaagca gcgcccaaaa gagcggtttt
     3181 gtttatcatt tttatccttt cttatagttt ttaatttata aaatcattta aggcttttat
     3241 ttgaatttgt tcttttgtta aattttcttt gattttttta acaaattcta aagcttttgc
     3301 attatcccca tgaacacaaa tgctatccgc ttttaaatca atttctttgc catttatgct
     3361 tgtaactttg ctttctttta tcatttttat cacgcgtttg atggctaaat tttcatcgtg
     3421 tattaacgct ccttctaatt ttcttgaaac taaagtgcca tcatcattat aggcacgatc
     3481 cgcaaaaact tcattagcat atcttaagcc ttttttctta gctgcttcat tcatagcaga
     3541 attactaagc cctagaaaaa taatattttc atcaaaactc gccactgcct cacaaagtgc
     3601 taaagctaaa ttttcatcaa ggactgccat attataaagt gctccatgag ctttaaaatg
     3661 ctgtattttc atatcttttg ccttagcaaa gccaaataaa gctcctagtt gatacaaggc
     3721 atagttttta gcctcttcaa agcttatttg catattgcgt cttccaaaac ccaaaagatc
     3781 aggataagat gggtgtgctc ctatgcaaac attattttgc ttggctaaat ttaaggtttt
     3841 atccatcaca caaggatcac ccgcatgaaa gccacaagcg acatttactg aacttacaaa
     3901 ttttaaaatt tcttcatcca ttcccatttt ataggcacca aaactttccc ctaaatcact
     3961 atttaaatcc actttgaaca ttatttgacc ttgtatattt aattattgat tttattatat
     4021 ctaaagaaga aatttaaata agctaaaagt tttgaaaaat aaataaaaag gttacaataa
     4081 gtaaaaataa tattttaagc aggctaaaac ctgcttaatt ttaatccttc cttgtttttg
     4141 catcaactac gaataaaggt ttatagagca gtttaaatcc gctaataaaa cttaaagtat
     4201 cgtcacttgt aagccaattg ataaattttt tagcttcagt ataattaaca tttttgcaat
     4261 gcttgggatt tgttgctata acagaataaa aatttttaag actatcatcg ccttcattta
     4321 cgattactaa gtttggcttg cctttttcat tggcttcgta tttgatataa gtgccacgat
     4381 cggttaaaat cacacctttt ttttcttcag cgattttgat acttgctaac attccttgtc
     4441 cgctttgttg ataccagctt tgtttttcag gcacacctcc aagatttttc caaagacttt
     4501 tttctttatt atcagtgcct gatttatcac ctcttgatat aaaagtgagt ttttcatttt
     4561 tgataagttc taagctttct tttaaatttt tacctttaaa tttagaagct aaagatttat
     4621 ctgcgatgat gataaaatca ttatacatca caggggttct atccacgcca aaaccttttt
     4681 ttataaattc tttttctgct tttggagagt gtacaaaaag tacatcagca ttgcaatctt
     4741 cacccatttt taaagccgca cctgttccta ctgcaaccca ttttaaggta ttgccacttt
     4801 cttgttcata aagaggtttt agggcatcta aaagtcctgt attgtcagtg cttgttgtgg
     4861 ttgccatttt aagttctgct gcacttgcac ttaaagttaa agcaagggct aaagaaatga
     4921 tttttttcat tttttttcct tataaattta cataaaaaaa tattttagca taattatgct
     4981 aaaattactt attttaaata aggaaacttt ttggattata tcttagaagg ctttactcaa
     5041 gctctatttt tgctttttaa cgctgatgaa agcgttattt ctgcaatcaa aacaacactt
     5101 tttagctcca gcatttctat cgttttatct ttgattgtag gttttccttt gggctttgct
     5161 ttaggttttt ttgaatttaa attgaagcgt tttataaaac ttatagttga taccagtctt
     5221 tcttttccta cggttgcggt tgggcttata ctttatgctt tgatttcaag cagagggcct
     5281 ttgggggatt taggcttgct ttttactgta aaagcattga ttttagggca gtttgtttta
     5341 gctcttccta ttgttatcgc acttttttct aatttgatag aaaatatgaa taaaaagcat
     5401 tttttactca tcaaatcttt acatttaagc actttaaagc ttgtgatgac tatcatttat
     5461 gagttgcgtt ttgctctagt aagcgttgtg gctttagctt atggcaggat agttgctgaa
     5521 gtaggagtag cgatgatagt gggtggaaat atcaaatacg atactagaac tattaccaca
     5581 gccatttccc ttgaaaccaa caaaggtgaa tttgctagcg gtattgctct tgctttagtt
     5641 ttgattttca tcgcttttat tttaaatttt attatacaca aactcaaaag atattaaatg
     5701 atagaacttt gtaattttaa atttaattat ggacaaaaaa atattttaaa tatcaaacac
     5761 ttatgtttag atactgataa aatcagtatt ttaatgggtt caaatggaag tggaaaatct
     5821 acacttttaa gaatactcaa atttcttgaa ggagaatttg ataatatcac ttattttggc
     5881 aataagcatt taaattcaga tgaaaaacgc caaatttact tactatttcc cgagcctgtc
     5941 tttttaaatc gcagtgtaga aaaaaatttt tattttttgt taaaaactta taaattagac
     6001 agcaaagaga ttaaaaaacg ccttaatgag gttttaaatt tacttgaaat tgatagaagt
     6061 ttgttaaaaa aatatcctag cgagctttca tctggacaag ggcaaaaaat agcatttgct
     6121 ttagctttaa gtgttagagc gaagtattat ttacttgatg agccaagtgc ttttttggat
     6181 aaagatacga tgatattgtt taaaaaagct attttatata tgcaaaaaac atacaaaagt
     6241 ggttttttaa tcgctagtca tgataaaaat ttcttagact ttttggcgca aaaaaaatat
     6301 tatttgcatg caggagagat tttagaattt gaaaatacaa atatttttga actcgaaaac
     6361 aaaggtgtga attttagtaa ttttatagat tttagtatgt gtaaaaacta tatttgcaaa
     6421 gatgaaattt caaacaaaat agctatcgat ccttataaaa tttctttttt atatcctgat
     6481 gatttttcca aacaaacatt tgattttaca cttcaaaaat gtatcatcat agcacttaga
     6541 acaagaaaag aatttgtttt tatcagagtg gagtgtggag gtaaaatttt agaatttgcc
     6601 ttagaatcag agcgatttaa acaagaaaaa ctaagcttgt atcaagaact ttgcttagtt
     6661 tttaatgaag aggctatttg tttcttaaat taacataatt tagaaatatt ttctttaatt
     6721 tattacaaat attcacattt ttgtaatttt cttcattaat tatttttaaa tttgtataaa
     6781 acacaaaaaa agtcttatat aatgtttata aataacttaa agaaggagga tttatgcgtt
     6841 atcaaaatac tcaaggactt tttaaaccta acaaacaact ttctcgcaac gcaagaataa
     6901 aaaatttatg cgaatattat gacttatgcg atgaggtaag ggaagatttt gaaggttttt
     6961 ggaaaagaca agctcttgaa aaaattgatt ggttttcgcc tttttctcgt gttttaaatg
     7021 atgataaagc cccattttat aaatggtttg agggtgggac tttaaatgta agttatcagt
     7081 gcttagatcg ccatatgaaa acaagacgca ataaagctgc tattgttttt gaaggggaaa
     7141 tgggtgatta tgaggtttat acttatcgta gattattgca tgaagtttgc aaggcggcaa
     7201 acttacttaa acgctttggt gtaaaaaaag gcgatagggt tataatttat atgcctatga
     7261 ttccagaaac ggctattgtt atgttagctt gtgcaagaat tggagctatt catagtgtgg
     7321 tatttggagg cttttcgcct gaagctttaa gagatagaat catagatgca ggagccaaac
     7381 ttgtagtaac agccgatgga gcttttcgtc gtggcaagcc ttatatgtta aaacctgctg
     7441 ttgataaggc tttgagtgag ggttgtgaaa gtgtagaaaa agtgcttata gttatacgca
     7501 ataacgaacc tatagaatat gtcaaaggaa gggattatat ctataatgag ttagtaaaaa
     7561 atgaatctta taaatgcgaa cctgaaatta tggatagtga agatttgtta tttttacttt
     7621 atacttcagg ttctacgggc aagccaaaag gagtaatgca tgcaagtgca ggttatatac
     7681 tttgggcgca aatgactatg gaatgggtat ttgatataaa agattatgat aattattggt
     7741 gtagtgcgga tgtgggttgg atcacaggac atacttatgt tgtttatggc cctttagcat
     7801 gtggagcaac tactattatg catgaaggaa cgcctactta tccaaattca gggcgttggt
     7861 ggagaatgat agaagagtat caagtgagca aattttatac ttcgcctact gctataagaa
     7921 tgcttcatgc agatgctcct gatgagccta aaaaatatga tttaaacact cttgaagtgc
     7981 ttggaactgt tggagaaccc atcaatccta gcgcttggca gtggttttat gaaaatatag
     8041 gaaattcaaa atgctccatc gttgatactt ggtggcaaac tgaaacagga gggcatatga
     8101 taacaccttt acctggagct actcctttaa aaccaggttg tgctaccttg cctttaccag
     8161 gaatttttgc agaagttatt gatgaagagg gtaatgtaaa agatgtggct gaagatggct
     8221 tgctttgtat taccaagcct tggccttcga tgattcgtgg aatttgggga gatgaaaacc
     8281 gctatataga aagttatttt tcacaagcca aaaaagaagg aaagccagtt tattttagcg
     8341 gggatggggc tttttatgat gataatggct atattactat cacgggaaga actgatgatg
     8401 tggtaaatgt tgcagggcac cgtataggaa cagctgaaat agaaagtgcc atcgctaaac
     8461 atccaagcgt agcagaatca gcagttgtaa gtgtgcttga tgcgattaag ggtgagtctt
     8521 tatttgcttt tgtggtttta aatccaactt caagttgtga tttaggaggg gctatagaaa
     8581 ccttaaaaga attaaatgat attttaagag cagagattgg acctatagct aagatcgaaa
     8641 aaattcttta tactacaggc ttgcctaaaa caagaagtgg taagatcatg agaagaattt
     8701 taagaaccat agcaaggggc gaggaattaa aacaagatat ttcaactctt gaggattcag
     8761 gagtggttca aagtattatc gatgcagcta agacaggaat tcaataaggc aaaaaattct
     8821 ttgccttatt tttaaataca tgttaaactt agttttgatt tatttaaaaa ttgtagtttt
     8881 tggttataat accaaaaaca aataaaggat aattatgctt caaacttgta tttttcctgc
     8941 agcaggatat gggactaggt ttctacccgc aaccaaagct ttacctaaag agatgttgcc
     9001 tatacttacc aaacctttga ttcattatgg agtagatgag gctttagaag caggtatgga
     9061 taatatgggt tttgttacag gtcgtggaaa aagagctttg gaggattatt ttgatatttc
     9121 ttatgagctt gagcatcaaa tttcgggtac aaataaagag tatttgttaa aagatatccg
     9181 ctctttaatt tatcgttgta cttttacctt tacaagacaa aatgaaatgc gcgggctcgg
     9241 cgatgcggta ttaaagggta ggcctttagc aggcgatgag gcttttggtg tgattttggc
     9301 tgatgatttg tgtatcaatg aagagggtgt taatgtgatg gcacaaatgg ttaa
//
LOCUS       DARAII010000070         9287 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.070, whole genome shotgun sequence.
ACCESSION   DARAII010000070 DARAII010000000
VERSION     DARAII010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9287
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.070"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..450
                     /locus_tag="SB143_001297"
     CDS             <1..450
                     /locus_tag="SB143_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEF9749831.1"
                     /translation="EASLFVRQAKLIGLNTPMGSADGVADATFIKLAGNASEGYIFTD
                     SFDANNPTTQLSKDFIAKYAKENQSKEVPNFTAMGADAYFVMFNAMNACQNTLTSECI
                     NEKIHQTNNYEGVSGVISIDKSGNATRSVVVKEIKNQKQTYKDTINP"
     gene            458..1417
                     /locus_tag="SB143_001298"
     CDS             458..1417
                     /locus_tag="SB143_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEF9749832.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYIALLLINFFSPIINHLNQTFFGSDELGKYLVVIFAAALVASMIFSSIVGILI
                     DKIAYKPLRKAPRISLLITAIGISFFLQNLFNVIFTSTEQQFPAPPIFETLVSIGGVS
                     TTLGSLLVPLVTLVVMLGVLFILYKSKYGIAIRALAFDIQTVNLMGINANRIIAIVFA
                     LGSALAALAGIFWSSNYYSAYPTMGTLVGLKAFAAAVLGGIGSVVGAVLGGLIIGLTE
                     VMAVAFFPELSGFKDAFAFIFLVFILLFRPTGILGINFEKSRF"
     gene            1420..2460
                     /locus_tag="SB143_001299"
     CDS             1420..2460
                     /locus_tag="SB143_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEF9749833.1"
                     /translation="MVKIKISALVYIVLAIAFIMLAPQFFDGYGIGILNQIAIYITLA
                     VSYNLINGVTGQFSLEPNGFIAVGAYAAALVLLSSEQKLDLFSLEDPNPIILALHTNS
                     FILALLVAGFSACVLSLILAFAVFRVRGDYLAIVTLGFGIIIQKLAINFPSWTNGSMG
                     LNGIPLLSNLYWTGGVAIISVILILNLVYSKFGRAMQAIRDDEDAASAMGVNTFWTKT
                     LAFGTSAFLEGVGGGLLVCLLASVSPEQFGFEFTFMLLIIIVLGGLGSTTGAILGAIL
                     IIGGREWLRFLDEMQIKIDFLGIDMGSMPGLRMVVFSLILILVMLFARRGIFGDRELN
                     SFFKRPSKKGLK"
     gene            2460..3230
                     /locus_tag="SB143_001300"
     CDS             2460..3230
                     /locus_tag="SB143_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749834.1"
                     /translation="MILELKNITKKFGEVRAINETSFHIKEGEIFALIGPNGAGKTTL
                     FNIITGNYKPTSGEVFFQNKKINDLKPHKIVHLGIARTFQNIRLFSSMSVLENVMIGF
                     DKQMKYSVLEAFLHLGRFHRVEQEFKNKAYKLLEELGISEFADEKATSLSYGQQRKVE
                     IARAMATNPKLLLLDEPAAGMNSSESDELAELILKLRKDYKISVLLIEHDMKFVNRLC
                     DKVLVLDYGKTIFEGKISDAVNHKEVIAAYLGDFDASS"
     gene            3217..3912
                     /locus_tag="SB143_001301"
     CDS             3217..3912
                     /locus_tag="SB143_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749835.1"
                     /translation="MLVVKNLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNAVKRTGEINFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAYN
                     NSENYEHLREQMYKLFPRLASKKHAMAGNLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGLIAMQGEAKKL
                     IGDDNIRKKYLGL"
     gene            3928..7188
                     /gene="ccsB"
                     /locus_tag="SB143_001302"
     CDS             3928..7188
                     /gene="ccsB"
                     /locus_tag="SB143_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome biogenesis protein CcsB"
                     /protein_id="HEF9749836.1"
                     /translation="MKNIIKSVGDLRISIVLFLLFALSCGLATFIESAYGTPTAWAMV
                     YDSFWFEYIQLLLGINLLFGMFRYKMFALKKMPLMIFHFSFLFILLGSAMTRYGGFEG
                     LLAIREHTQNALVESSKTSLRISTIKDGERYTSVNDRYIGNLPFANSFKLNLNMGDEK
                     AVLKYENLILDADYTYKEDNVSSPLLVLTISEKKSQGANLEFRSGEVQNINGINFAFM
                     NDDVAKPYIKIDKNLKLSSSENLSVFNMKKGENSTLKIGEKADAKDLRLYSLDNLNFV
                     VKFASLHGAQEIQGVNRPQDESFWLWFKSAWLEFARTIMISSFGEPQNWKASWLTNFK
                     DFAMSKDYQALELKGAHALKLQLDYKNESKEFYVFEYNKPTVVELAGQKFFISWALAY
                     EQLPFEIYLRDFVIDRYPGSMSPASYASEITVKNNEDNFDYRIFMNNVLDYKGYRFYQ
                     SSYDQDEKGTILSVNKDPGKIPTYIGYFLLCLGMFLNFLNPHSRFRTLARLINKDALK
                     HTASVLALFVALFGADKMLAQDLNISLEQNIPIVDKAHVKELKALIVQKSVDGRMIPF
                     DTLAREILEKIHKSADYKGQEASAIMLSMLINVDLWQNEAFILMPSNKNVREAIAEIL
                     EISPELKYVKYKDFFDANNRYKLQKYVENANRKNPNARGVFDKEIIYLDERANVVNLV
                     FSGELFKFIPIQNHDNNAWLAPFSAITTLKDEEGQFVFTLIKNYFSSVDSAFHDGNWT
                     RANEALGFIKQYQEKIGHEVMPNKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLIVLL
                     IKMVAPKLKISLIFKVIYILNILAFIVHTVGLGLRAYLADHAPWSNGYESMVYIAWAL
                     SLSGIFFSRKSPIALSLTSILAGIVLAVAHLSEMNPQITNLMPVLNSYWLSIHVSVIT
                     ASYGFLGLCSLLGIFTLLLMCFLKENNQYNQSILRNITEATRINEMSMIFGLCLLTVG
                     NFLGAIWANESWGRYWSWDPKETWALVSILVYAAILHIRMIPKYSNQFTFALWSMFAY
                     WVVIMTYFGVNYFLVGLHSYAAGEAVQIPSYVYWGVVIMIVLALLARRKREFVGKL"
     gene            7188..7643
                     /locus_tag="SB143_001303"
     CDS             7188..7643
                     /locus_tag="SB143_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749837.1"
                     /translation="MSHIFWVIICTSGALLLFLSLIAYLILSDNKKKNKKQKNTENTA
                     KARKFDNDLNKMIAAASDLKYSDRDLKELVKLFVQTHKLGSKTSKELDEKTKNKLEFV
                     SALAANPKASPQTVSFLNQELKKISASYKKEIDAYEQMGLAKRKIKEEK"
     gene            7809..7949
                     /locus_tag="SB143_001304"
     CDS             7809..7949
                     /locus_tag="SB143_001304"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749838.1"
                     /translation="MQDASRKYLVVLHTMINYSVESYGLFGDEREVGSFTSVGHKGVD
                     GG"
     gene            8019..8189
                     /locus_tag="SB143_001305"
     CDS             8019..8189
                     /locus_tag="SB143_001305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749839.1"
                     /translation="MRFYKMLLALILSTNLANAYDTTIIYNEDKPIFKLDFYNKGENT
                     VFLVKLLPLPIL"
     gene            8360..8509
                     /locus_tag="SB143_001306"
     CDS             8360..8509
                     /locus_tag="SB143_001306"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749840.1"
                     /translation="MQGESIDTIRQELIGVSEDFFTKASVEYLGHINMGKLDWYIAFS
                     SYYPT"
     gene            8604..>9287
                     /locus_tag="SB143_001307"
     CDS             8604..>9287
                     /locus_tag="SB143_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749841.1"
                     /translation="MGQCFNGFLNSFSDHLYDLNGVKAQIGMRIVKTQAEVEEAKLKG
                     ETVFLVKDDGVYINGSFSNASGNVYFKGENVAEVIKNAKLGYDGVNGIPINAWEGIIL
                     DMSHIELDNSLMSHQSWRNYNFYMEAELALLQDIGYNFDRKLYYGDSIYESNLLNWQS
                     DHGYYARKDGKWLIGEYNPTEYGVSLHIYSKNNIATQSHDILSSGVAASGIRIDGSNN
                     QLIIANDTKV"
BASE COUNT         2990 a         1197 c         1823 g         3277 t
ORIGIN      
        1 gaagcttctt tgtttgttag gcaagcaaag ctcataggtt taaatacccc aatgggttca
       61 gctgatgggg ttgcagatgc tacttttatt aaattagcag gcaatgcaag cgaaggatat
      121 atttttacag atagctttga tgcaaacaat cctacaaccc agctaagtaa agattttata
      181 gctaaatacg caaaggaaaa tcaaagtaaa gaggttccaa attttacagc tatgggagcg
      241 gatgcttatt ttgtaatgtt taatgctatg aatgcttgcc aaaatacact tacaagtgag
      301 tgtattaatg aaaaaattca ccaaacaaac aattatgaag gagtttctgg ggttattagt
      361 atcgataaaa gcggaaatgc aactcgttct gtggtagtga aagaaattaa aaatcaaaaa
      421 caaacttata aagatactat aaatccttag gaaaaatatg gactctactt tatttttaca
      481 acaacttgtt aatggtctta gtctaggcag tatgtacgca cttattgccg tgggctatac
      541 catggtatat ggtgtattaa ggctgatcaa ttttgcacac ggtgatatta tgatggtggg
      601 tgcttatata gcccttttgt tgataaattt tttttctcca attatcaatc atttaaatca
      661 aacttttttt ggtagcgatg agcttggaaa atatcttgtt gttatttttg cagctgcact
      721 tgtggcttct atgatctttt cttctattgt gggaatattg atagataaaa ttgcctataa
      781 gcctttaaga aaagctccta gaatttcatt attgataact gcaatcggta ttagcttttt
      841 tttacaaaat ctttttaatg tgatttttac ttcaaccgaa cagcaatttc cagcaccacc
      901 aatatttgaa actttggtta gcataggcgg tgttagtaca actttaggtt cgttgcttgt
      961 acctttagta actctagtag taatgcttgg agtccttttt attctttata aaagtaaata
     1021 cggcatagcc attcgtgctt tggcttttga tatacaaact gtaaatttaa tgggaattaa
     1081 tgcaaataga attattgcca ttgtttttgc tttaggatct gctttagctg ctctagcagg
     1141 gattttttgg tcgagtaatt actattctgc ttatcctact atggggactt tagttggact
     1201 taaggccttt gcagcagcag ttttaggagg gattggctct gtagtaggag cggttctagg
     1261 aggactcatc ataggattga ctgaagttat ggccgtggct ttctttccag agctttcggg
     1321 ttttaaggat gcttttgctt ttatttttct tgtgtttatc ttacttttta gaccaacggg
     1381 aattttgggc ataaattttg aaaagagtag gttttaaaaa tggtaaaaat taaaatttca
     1441 gctttagttt atattgtttt agctattgct tttattatgc ttgctccaca attttttgat
     1501 ggctatggta ttggtatatt aaatcaaatt gctatttata ttactttagc agtaagttat
     1561 aatttaatca atggtgtcac aggtcagttt tctttagagc caaatggttt tatagcagta
     1621 ggtgcttatg ctgcggctct agtgctttta agctcggaac aaaaattaga tttattcagt
     1681 ttagaagacc caaatcctat cattttagct ttgcatacaa attctttcat cttagcactt
     1741 ttagtcgctg gctttagcgc ttgtgtttta tctttaatcc ttgcttttgc tgtttttcgt
     1801 gtaagagggg attatctagc tattgtaact ttaggttttg gtattattat ccaaaaatta
     1861 gcgattaatt ttccaagttg gacaaatgga tctatgggct taaatggtat tcctttgctt
     1921 tcaaatcttt attggacagg tggagtggcg attatatctg ttattttgat tttaaatttg
     1981 gtttattcta aatttggcag ggcaatgcaa gcaattaggg atgatgaaga cgctgcgagc
     2041 gctatgggag taaatacttt ttggactaaa actcttgctt ttggaacttc tgctttttta
     2101 gagggcgtag gtggaggact tttggtttgt cttcttgcct ctgtttctcc agagcaattt
     2161 ggttttgaat ttacttttat gttgcttata attatagttt taggcggctt aggttctact
     2221 acgggagcta ttttgggagc tattttgatc ataggtggaa gagagtggtt aagattttta
     2281 gatgaaatgc agattaaaat cgattttcta ggtatcgata tgggttctat gccaggactt
     2341 agaatggtgg ttttttcttt aattcttatt ttagttatgc tttttgcacg acgcggaatt
     2401 tttggcgata gagagcttaa ttccttcttt aaaagacctt ctaaaaaagg acttaaataa
     2461 tgattttgga gcttaagaat attactaaaa aatttgggga agtgagagct attaatgaaa
     2521 cttcttttca tattaaagag ggtgaaattt ttgctctaat tggtcctaat ggtgcgggca
     2581 aaacaacact ttttaatatt attacaggca attataaacc aacaagcgga gaagtatttt
     2641 ttcaaaataa gaaaattaac gatttaaagc ctcataaaat tgtgcattta ggcatagcaa
     2701 gaacctttca aaacattaga ttattttcaa gtatgagtgt gcttgaaaat gttatgatag
     2761 gttttgataa acaaatgaaa tatagcgttt tggaagcttt tttgcattta ggtcgtttcc
     2821 atagggttga gcaagaattt aaaaataaag cttataagct tttagaagaa ctcggtatta
     2881 gtgaatttgc agatgagaaa gctacgagtt taagttatgg tcagcaaaga aaagttgaaa
     2941 ttgcaagagc tatggctaca aacccaaaac ttcttttact tgatgaacct gctgcaggta
     3001 tgaattctag cgaaagcgat gaattagcag agcttatttt aaagcttaga aaagactata
     3061 agatcagcgt tttgcttata gagcacgata tgaaatttgt taataggctt tgtgataaag
     3121 ttttggtgct tgattatggt aagactattt ttgaaggaaa aataagtgat gctgtaaatc
     3181 ataaagaggt aattgctgct tatttgggag attttgatgc tagtagttaa aaatttgcat
     3241 gtttattatg gcttgattga agcagttaag ggtatagatt ttaaagtaga aacaggtcat
     3301 atagtttctc ttattggctc taatggagca ggaaagactt ctactctcaa tgcgctttta
     3361 aatgcagtaa aacgaactgg agaaataaat tttttaggtt atgatacaaa aaggcatcta
     3421 actcatactt tggtgcaaaa aggtatagct ttagtgcctg aaggaaggcg cgtttttatc
     3481 aatcttagtg tcgaagaaaa tttaaaaata ggtgcttata ataatagtga aaactatgag
     3541 cacttaagag agcaaatgta taagttattt ccaagacttg cgagcaaaaa acatgctatg
     3601 gcaggaaatt taagtggagg ggaagctcaa atgcttgcta tttcaagagc tttgatgagc
     3661 gaacctaagc ttttaatgct tgatgagccc tcgcttggac ttgctcctaa gatagttgga
     3721 gaggtttttg atatcatagt gcgtttaaag gaagagggca ttactatact tttagtggaa
     3781 caaaatgctt actctgcgtt aaagataagt gattatgctt atgttttaga aaatggactt
     3841 attgcaatgc aaggtgaggc taaaaaactc ataggcgatg acaatattag aaaaaaatat
     3901 ttaggattat gatacagagg ttaggatatg aaaaatatta ttaaaagtgt gggtgattta
     3961 agaatttcta tagttttatt tttgcttttt gctttatctt gtggcttggc aacctttata
     4021 gagagtgctt atggtacacc tactgcatgg gcaatggtat atgatagttt ttggtttgag
     4081 tatatacagc ttttgttagg cataaattta ttatttggaa tgtttcgtta taagatgttt
     4141 gctctaaaaa aaatgccttt gatgattttt catttttctt ttctttttat cttgcttggc
     4201 tctgctatga ctcgttatgg tggttttgaa ggtttattag cgattcgaga gcacactcaa
     4261 aatgctttag ttgaaagctc taaaacctct ttaagaattt ctactattaa agatggcgag
     4321 cgttatactt ccgtaaatga tcgttacata ggaaatttac cttttgcaaa ttcttttaaa
     4381 ttaaatttaa atatgggaga tgaaaaagct gttttaaaat atgaaaattt aattttagat
     4441 gcagattata cttataaaga agataatgtt tcttcaccct tgcttgtttt gactatttct
     4501 gaaaaaaaat cccaaggtgc gaatttggaa tttagatcag gagaggtaca aaatatcaac
     4561 ggaattaatt ttgcctttat gaatgatgat gtggctaaac cttatatcaa aatagataaa
     4621 aatttaaaat taagctcaag tgaaaattta agcgttttta acatgaaaaa aggcgagaat
     4681 tcaactctta aaattggcga aaaggcagat gctaaagatc ttagattata tagtttggat
     4741 aatttaaatt ttgtagtgaa atttgcttct ttacatggag ctcaagaaat tcaaggtgtt
     4801 aacaggccgc aagatgaaag cttttggcta tggtttaaat cagcttggtt agaatttgca
     4861 agaactataa tgatatcaag ctttggggag ccacaaaact ggaaagcttc atggcttaca
     4921 aattttaaag attttgctat gagtaaggat tatcaagctt tggaattaaa aggagcacat
     4981 gcgctaaaac ttcaattaga ttataagaat gaaagtaaag aattttatgt atttgaatac
     5041 aataaaccta ccgtagtaga acttgctggg caaaaattct ttatttcttg ggcgcttgca
     5101 tatgagcaat tgccttttga aatttattta agagattttg ttatagatcg ttatcctgga
     5161 tctatgtctc ctgcttctta tgcaagtgaa attacggtta aaaataatga agataatttc
     5221 gattatagga ttttcatgaa taatgtgtta gattataagg gttatagatt ttatcaaagt
     5281 tcttacgatc aggatgaaaa agggacgata ttatcagtca ataaagaccc gggtaaaatt
     5341 cctacatata taggttattt cttgctttgt ttaggtatgt ttttaaattt cttaaaccca
     5401 cattcaagat ttagaactct agcaagactt atcaataaag acgctctgaa gcatactgct
     5461 agtgttttgg ctttatttgt agctttattt ggagcagata aaatgcttgc tcaagattta
     5521 aatataagct tagagcaaaa tatacctata gtggataaag cacatgttaa agagcttaaa
     5581 gcccttatcg tgcaaaaatc tgtagatggt agaatgatac cttttgatac tttagctaga
     5641 gaaattttgg aaaaaattca taagagtgca gactataaag gacaagaagc aagcgctata
     5701 atgctttcaa tgcttatcaa tgtagattta tggcaaaatg aagcctttat tttaatgcca
     5761 agcaataaaa atgttcgtga ggctatcgct gaaattttag aaatttctcc agaattaaaa
     5821 tatgtcaaat ataaggattt ctttgatgct aataatcgtt acaaacttca aaaatatgtg
     5881 gaaaatgcta accgcaaaaa cccaaatgct agaggggtat ttgataaaga aatcatttat
     5941 ttagatgaaa gagcaaatgt tgtaaatttg gtttttagtg gagaactttt taaatttatt
     6001 cctatacaaa atcatgacaa taatgcatgg ttggctcctt tttctgctat tacaacactt
     6061 aaggatgaag agggtcagtt tgtttttaca cttataaaaa attatttttc ttctgtggac
     6121 tcagcttttc atgatggaaa ttggacaaga gctaatgaag ctttaggttt tatcaaacaa
     6181 tatcaagaga aaatagggca tgaggttatg cctaataaaa caaaagtaga gatggaaatt
     6241 ttttcaaata aagctgaaat ttttgtcaaa cttgctcctg tatatttaat cgcgggattt
     6301 ttattgttga ttgttctttt gattaaaatg gttgcgccaa aacttaaaat ttctcttata
     6361 tttaaagtca tttatatttt aaatatttta gcctttatag tccatactgt aggacttgga
     6421 ttgcgtgctt acttagcaga tcatgctcct tggagtaatg gatatgagag tatggtttat
     6481 atagcttggg ctttatctct ttcaggaatt ttcttttcta gaaaaagtcc gattgcttta
     6541 tctttgactt ctatacttgc gggtattgtt ttagctgtgg ctcacttaag tgagatgaat
     6601 ccacaaatta caaatcttat gccagtgctt aattcgtatt ggcttagtat ccatgtgtca
     6661 gttattactg ctagctatgg atttttagga ctttgttctt tgcttggaat ttttacttta
     6721 ttgttaatgt gttttttaaa agaaaacaat caatacaatc aaagtatttt aagaaatatc
     6781 acagaagcaa ctcgaattaa tgaaatgtca atgatttttg gactttgttt gcttactgtt
     6841 ggaaatttct taggtgcaat ttgggccaat gagagttggg gtagatattg gagttgggat
     6901 ccaaaagaaa cttgggcttt ggtaagtatt ttggtttatg cggctatttt gcatattaga
     6961 atgattccaa aatattctaa tcaatttacc tttgcattat ggagtatgtt tgcttattgg
     7021 gttgttatta tgacttattt tggagtaaat tatttcttag taggtttgca ctcttatgct
     7081 gcaggagaag ctgttcaaat tcctagttat gtttattggg gagttgtgat tatgattgtt
     7141 ttagcattac ttgcaagaag aaagcgtgag tttgtaggca aactttaatg agccatattt
     7201 tttgggtgat tatttgcacc tctggagctt tgctcctctt tttgagtttg atagcttatt
     7261 tgattctcag tgataataaa aagaaaaata aaaaacaaaa aaatactgag aatacagcta
     7321 aagcccgcaa atttgataat gatttaaata agatgatagc agcggcgagt gatttaaaat
     7381 atagcgatcg tgatttaaag gagttggtaa agctctttgt tcaaacacat aagctaggct
     7441 ctaaaacttc taaagaatta gatgaaaaaa caaaaaataa attagaattt gtatccgctt
     7501 tagctgctaa cccaaaagct agccctcaaa ctgtaagttt tttaaatcaa gagcttaaaa
     7561 aaatttctgc ttcttacaaa aaagaaatcg atgcctatga gcagatgggt ttagcaaaaa
     7621 gaaaaatcaa agaagagaaa taaaaccaga tttaaatttt ttaagcgtat gtgtttttaa
     7681 agaaattaca agcaattatg gtggagttta tattttgata aagagataag agaagagata
     7741 ttacagagag aaagcatatt ttaaaggcgc taaaggacga gagtttgggt gatgatattt
     7801 gagattggtt gcaagatgca agcagaaaat atcttgttgt tttacatacc atgataaatt
     7861 atagtgtaga aagctatgga ttatttggag atgaaagaga ggtgggtagc tttacaagcg
     7921 taggacacaa aggtgttgat ggtggataag ttaaaacaaa attttattat cacatctaat
     7981 aattacgcgg acaaaaatat gcctatcaag gagtaagtat gcgtttttat aaaatgcttc
     8041 tggctttaat cttaagtaca aatttagcca atgcttatga tactactatt atttataatg
     8101 aagataaacc tatttttaaa cttgattttt acaataaagg agaaaatacg gtttttttgg
     8161 tgaaactgtt gcctcttcct atactttaaa tgagatccaa agaaatgaaa tcattcgtgc
     8221 gactcaattt tgggctaata ttataggagc tagtgcaatc aattcttccc ccattcctat
     8281 cagtgtaagt acctttgata ttccaaatgc caatgcatta tcttatgatt tcttttctaa
     8341 tcctatattt aatagggtat tgcaaggaga aagtatagat actattagac aagaacttat
     8401 aggtgtatca gaagattttt ttactaaagc aagtgtagaa tacttagggc atattaatat
     8461 gggaaagctt gattggtata tagctttctc atcctactac cctacctaaa aatgggaatc
     8521 agtttgatac tttttctacc ttcacccatg agctttttca tgctttaggc gtgttatctt
     8581 tagctggtag ttgtggagga aatttgggac aatgttttaa cggtttttta aacagtttta
     8641 gtgatcattt atatgatctt aatggagtaa aagctcaaat aggaatgaga atagttaaaa
     8701 cccaagcaga ggtagaagaa gctaagttaa aaggagagac ggttttctta gttaaggacg
     8761 atggtgttta tattaatggc agttttagca atgcttcggg caatgtttat tttaaaggag
     8821 aaaatgtcgc agaagttatt aaaaatgcta aactaggtta tgatggggtt aatggtattc
     8881 ctatcaatgc ttgggaaggg attatattag atatgtctca tattgagctt gataattctt
     8941 taatgagtca tcaaagttgg cgtaattata acttctatat ggaagcagaa ttagccttgc
     9001 ttcaggatat aggttataat tttgatagaa aactttatta tggagattct atttacgaaa
     9061 gcaatctttt aaactggcaa agcgatcatg gttattatgc tagaaaagat ggcaaatggc
     9121 ttataggaga atacaatcct acagaatacg gagtgagttt gcatatctat agtaaaaata
     9181 atatagccac tcaaagccat gatattttat caagtggcgt agctgcaagt ggtattcgta
     9241 tagatggatc gaataaccaa ttgattatag ccaatgatac taaggtt
//
LOCUS       DARAII010000071         9013 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.071, whole genome shotgun sequence.
ACCESSION   DARAII010000071 DARAII010000000
VERSION     DARAII010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9013)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9013)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9013
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.071"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1154)
                     /gene="glmU"
                     /locus_tag="SB143_001308"
     CDS             complement(<1..1154)
                     /gene="glmU"
                     /locus_tag="SB143_001308"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEF9749842.1"
                     /translation="MKTSILILAAGLGTRMKSQKPKVLQELCQKSMILHILEKAFAIS
                     EDVSVVLSHQKERVEKEILKHFPKTQILEQDLINFPGTAGALKEFRPKNEKVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAP"
     gene            1304..2038
                     /gene="fliP"
                     /locus_tag="SB143_001309"
     CDS             1304..2038
                     /gene="fliP"
                     /locus_tag="SB143_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEF9749843.1"
                     /translation="MLTLLFISGFFSVIFAAEATIPTVNLSLSAPDTPNQLVTTLNIV
                     IVLTILALAPSIIFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEQIGYEEAFARGVKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPVMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            complement(2035..2259)
                     /locus_tag="SB143_001310"
     CDS             complement(2035..2259)
                     /locus_tag="SB143_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749844.1"
                     /translation="MLEFIFTLILDFTFYSIKTLEKVFLGRTALVILFVVFIALFCVK
                     GLFLYILLALELFLLLYLFLGILFLRFYKS"
     gene            complement(2279..2512)
                     /locus_tag="SB143_001311"
     CDS             complement(2279..2512)
                     /locus_tag="SB143_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749845.1"
                     /translation="MKKVVFFLLFLFLSCTVLNAAREYCKYAYQEDRAIPLILNYGIR
                     LGVVGAGVANAPAPGGSTYNSKIDMMAARCHQA"
     gene            complement(2605..3375)
                     /locus_tag="SB143_001312"
     CDS             complement(2605..3375)
                     /locus_tag="SB143_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEF9749846.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDERKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVRKGDEALKDK
                     LDNFIDESRKNGFLDFLGNKYLKDIKEVFKQNNITFFL"
     gene            complement(3470..4771)
                     /locus_tag="SB143_001313"
     CDS             complement(3470..4771)
                     /locus_tag="SB143_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749847.1"
                     /translation="MSIFSINDNSNYGSILSQAKANKESKENSKISFANAFLKQNASK
                     LNEIQNANSQTLARSEVLNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQVDTSNIVSLAYGYGVDVNGYMGSDFNKAAGLPEDFKIHKSTLDEIYSFNTSFKEHT
                     ANDLGVSNYYTNIDMADTIRQYYSKFNQIINHSFGNSNKTSFSVEDLNSLPKGYSIHN
                     TDFKFMFQNLDSQTITNFYNTQERYNEAEQLGMFGHINIGLQPLNFTPQSMQTQNLDE
                     NSAKYTFNPDMSVYPQNEDGSYSKEALFMSFLKSSGGEALEGGNTTLNPLVKAHIEAM
                     TKESFDGSLASLDDIMTGKVDFASLLKGYAQDGWLDADIYAMEKGVAWQNTSIGYGGA
                     WFDNQFNQAKANGWKASSESINSYVGSIMDRLNNLIGQTRV"
     gene            complement(4847..6208)
                     /locus_tag="SB143_001314"
     CDS             complement(4847..6208)
                     /locus_tag="SB143_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749848.1"
                     /translation="MSIFSINDNSNYNSILSQAKANKESKENSKISFANAFLKQNASK
                     LNEIQSANSQTLARSEILSNNNALSNNSNSTNISNSSNTNLSINNATKTSSPNYDISS
                     EFKNSIYTLKYKQADISNIVSLAYGYGVDANGYMGSDFNKAAGLPEDFKIHKSTLDEI
                     KKAAENEPYIADMKQYFGVSEYYTNIDMAETIKQYYNLFSNALGQSFPNDKTSFSEAD
                     INSMPSGYGVSGTQWMDFNDPSNRMNITHLKDFSNSLISNVYQTPEQAKEANEIWFDS
                     GCMIKGLSSETLGLSLEEIKNVSKGEDWQFNPDMSVYPQNEDGSYSKEALFMSFLKSQ
                     GGQPIESPKTTLNPTIEAYNRAMAKESFSGPAIHLDSIMTGKSDFKSFFRYWAERGIA
                     EGDLYMYENNIPKESAMGNWALDAEIKQAIANGWKAKPSTINSYADSIMDRLNNLIGQ
                     TRV"
     gene            complement(6294..7013)
                     /gene="kdsB"
                     /locus_tag="SB143_001315"
     CDS             complement(6294..7013)
                     /gene="kdsB"
                     /locus_tag="SB143_001315"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEF9749849.1"
                     /translation="MIIIPTRLASTRFPEKILCDIGGVPMFIATAKQVSSVDEVCIAV
                     DDEKVLEIAKQYGFKAVLTSKNHESGTDRINEACKKLGLKDDEIIINVQADEPFIECE
                     NLAKFKEFANSCLKQEAFMASCYKDISKDDASDPNLVKVVCDKNDFALYFSRAKIPYE
                     RADYEESFKGHLGIYAYSVKALREFCTLENSALEKAEKLEQLRAIENGKKIKMLQINT
                     SSMGIDTKEDYERALRIYLGK"
     gene            complement(7010..8422)
                     /locus_tag="SB143_001316"
     CDS             complement(7010..8422)
                     /locus_tag="SB143_001316"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEF9749850.1"
                     /translation="MLLVESRNINNKVDFKNALVNPNAPQGGLYSPLSLPQFDGEKYA
                     NLSYKEFALKLIESFEFGHEALFDKALKSYEKFDDKNSPIALKKIKDKTYINELWHGP
                     TRAFKDMALQPFGVLLNEFSQNEKILIICATSGDTGPATLKSFENLENIKVLCMYPKG
                     GTSAIQELQMRALDKGNLKVFAIRGDFDDAQRTLKNLLAKETFKDELSKVGYGLCAAN
                     SVNFGRILFQIIYHYYASLKLYHEFKEEIEILIPSGNFGNALGAYYAKLMGAKISKIK
                     IVSNANNILTDFFTKGEYDLRDRSLKKTISPAMDILISSNIERLLFSKFSDLRTNELM
                     NLLKTEKYFKLEKEELQSLQEDFEADFCTDEECMKFIKESKILIDPHTATCFKMLDTS
                     KPSIITSTAEWTKFTPSMVKALFGRECKDEKADFELLAKEFKVDIKKDLLELFDLKNA
                     DEKVYEIGDIEGEILEWIKK"
     gene            complement(8409..>9013)
                     /locus_tag="SB143_001317"
     CDS             complement(8409..>9013)
                     /locus_tag="SB143_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEF9749851.1"
                     /translation="SQSGDEAMEYAFEECVKGVIVSEDRVAGIQKAFELGAKIVLLDD
                     AFSKFHIQKFDILLESKIKPYFNFTLPSGAYRLPKFYEKKADFIACEGRDFIRYSYVK
                     ENPKAVLVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELQALLDKHHCDTLMLTFK
                     DYVKVKDFGFKCQIIELNIELKENFKEKLYQYIRSFNVAS"
BASE COUNT         2907 a         1634 c         1114 g         3358 t
ORIGIN      
        1 ggtgcgataa attgtgtatc cgaacctaca aaaacatttt ttcctataat ggttttatgc
       61 ttttttaccc catcataatt acaagtgata gtcccacagc ctatattagt tccactatct
      121 atctcacaat ctcctaaata actcaaatgt cctgctttta cggtatttaa ctttgcattt
      181 ttgcattcta caaaatttcc tatatgagtg ttttttaact cacaatttgg acgcaaatgt
      241 gccaaaggcc ctacatcgct attttctacg atggaatttt ctatcacgct tgaactttta
      301 atgatagagt ttataatctt acttttgccc tctatcctta cattttcata tacttcacat
      361 tcacctacaa attcaacatc tgcacctata aaagtgcttt gcggtaaatg aaaaatcaca
      421 ccctgttgca tccagtattt tttaattttt tcttgcatga aattttcagc tatactgagt
      481 tcaaatttat cattaatccc cataaattca tcttcatcta caaaaactgc tttaatcatc
      541 acatcttttt cttttgctag ttttacaatg tcggttaaat aatactcttt tgccgcatta
      601 ttgttatcaa tcaaaggtaa aagctctttt aaaagtctcg agtcaatcac ataaacccca
      661 gcattgcaag tatttatctc tttttcttgc gtatttgcat ctttaaattc aacaattttt
      721 tcaacgctat cgttttttat caccacccta ccataacttt taggatctct tgctttaaaa
      781 actgctagat ttaattttgc attattactc aacaaagctt ccaaacttgt ttgctcaacc
      841 aaaggcatat ccccgcaaag aattaaaact ttttcatttt taggcctaaa ttcctttaaa
      901 gcgcccgcag tgcctgggaa attgatcaaa tcttgttcta aaatttgcgt tttaggaaaa
      961 tgttttaaaa tttctttttc aacgcgttct ttttgatgag ataaaaccac gctcacatct
     1021 tcacttatag caaaagcttt ctctaagata tgtaaaatca tgcttttttg acacagttct
     1081 tgcaatacct ttggtttttg tgatttcatt cttgttccaa gtcctgctgc taaaatcaaa
     1141 atggaagttt tcattataaa aagccttttg aggataattt tattttaatt ttaacatttt
     1201 aaagttaaat ttttctctaa attaaaacaa gttaaactct tttttagtga gtaaaagtta
     1261 aaattaagtt tcatttttta atcaaggttt atttttgaaa aaaattttaa cattattgtt
     1321 tatcagcggt ttttttagcg ttattttcgc tgccgaagca acaattccta cagtaaattt
     1381 aagcctaagt gctcctgata ctcctaatca acttgttaca acattaaaca tagtcatagt
     1441 cttaaccata cttgcattag ctccaagtat aatttttgtt atgacttctt ttttacgctt
     1501 gattgtagtt ttttcattct tgcgtcaagc tatgggaact caaagtatgc cgcctaatac
     1561 catcttagta accttggcat tgattttaac cttttttata atggagcctg tggctacaaa
     1621 gtcttataat gaaggcatca agccttattt agcagagcaa ataggctatg aagaagcttt
     1681 tgcaagaggt gtgaaacctt ttaaagattt tatgcttaaa aatacacgcg aaaaagactt
     1741 agctttattt taccgcatac gaaacctgcc taatcctaaa accatagatg atgttccact
     1801 tacggtttta gttcctgctt ttatgatttc agaacttaaa actgcttttg agataggctt
     1861 tttgatttat ttgccatttt tggttatcga tatggttgtg agttcggttt tgatggcgat
     1921 ggggatgatg atgcttcctc ctgttatgat ttcattgcct tttaaacttt tgatttttgt
     1981 attagtggat ggatggaatt tgctagtgca aaggcttgtg gaaagctttg taacctaaga
     2041 tttataaaat cttaaaaaca aaattccaag aaaaagatac aaaagcaaaa ataattctaa
     2101 agctaaaagt atatacaaaa acaagccttt aacgcaaaaa agagctataa aaacaacaaa
     2161 aagaattact aaggctgttc gccctaaaaa gactttttct agggtcttga tagaataaaa
     2221 agtaaaatct aaaataagag taaaaataaa ttctagcatt gtaaaataca cccaaaaact
     2281 aagcttggtg gcatcttgca gccatcatgt caatttttga attgtaagta cttccgcccg
     2341 gtgcaggtgc attcgcaacc ccagcaccta ctacccccaa tcttattcca taatttaaaa
     2401 ttaaaggtat agctctatct tcttgataag catatttaca atactcccta gctgcgttta
     2461 gtacagtgca agataaaaac aaaaataaca aaaaaaatac aacttttttc attaccttaa
     2521 atccttttat ttaaaattta gataatgata ttgtatatca aaatttataa aattaatatt
     2581 aattatcaat attttattaa aagcctacaa gaaaaaagtg atattatttt gcttaaaaac
     2641 ttctttaatg tcttttaaat acttattgcc caaaaaatct aaaaagccat ttttcctact
     2701 ctcatcaatg aaattatcaa gcttgtcctt taaagcttca tcaccttttc ttacagctat
     2761 accccaaaac tcaggatttt cttgaaaagg cgctaaaatg gctctggttg tatcttgatg
     2821 cttttgccaa gtccgataaa tcgtaagttg atcataaaaa aatccatcag ccttgccttg
     2881 aatcacttcc aaaatagcag cattttcttt atcgaataaa ttaatagttg cattttttaa
     2941 atttttaacc gcatataaat gccctgtaga accacgcttt aaagccaaaa ctttgccctt
     3001 tttatctaaa tctttgatat ttgtaatatc agagttcaaa ggagttaaaa tagccaaatt
     3061 tgccttagca taaggaatgc taaaatccac cactttcttt ctctcatcgg taattgtcat
     3121 agaggacata ataagatcta tcttggctgt ttttaaagca ggtattaaac catcccaagc
     3181 gatatttttt actacaagtt tatagccgtt tttctttgca aaagcttcta aaaaatccac
     3241 gctaattcca cttgctttgc ctgttttatc gctcatttca aaaggcggat atccaagctc
     3301 cattcctaca accaaatctt ttgcactcaa atttaaagca aaaaaagaga taaaaatcaa
     3361 aataattttt ttcataattt cctttcaaat ttttttgtaa aaaaattata ctaattttat
     3421 cttattttgt tattagcaat ttatttcaaa cttaaaaaat taatacttcc taaaccctag
     3481 tttgtcctat aagattatta agtctatcca ttatagatcc aacataagaa tttatacttt
     3541 cactgcttgc tttccaacca ttagcctttg cttgattaaa ctgattatca aaccaagctc
     3601 caccataacc tatgcttgta ttttgccaag caactccttt ttccattgca tatatatctg
     3661 catcaagcca accatcttgt gcatagcctt ttaataaact tgcaaaatct actttgcctg
     3721 tcataatgtc gtctaaggaa gctaaagagc catcaaagct ttctttcgtc atagcttcaa
     3781 tatgtgcttt aactaatgga tttaatgttg tattaccacc ttctaaagct tctccaccgc
     3841 tagattttaa aaaactcata aacaaagctt ctttagaata acttccatct tcattttgtg
     3901 gataaactga catatcagga ttaaaagtat attttgcact attttcatct aaattttgag
     3961 tttgcatact ttgcggagtg aaatttaatg gttgtaagcc tatattaata tgcccaaaca
     4021 ttcctaattg ttctgcttca ttatatcgtt cttgtgtatt atagaaattt gttatagttt
     4081 gactatctaa attttgaaac ataaacttaa aatccgtatt atgaatacta tacccctttg
     4141 gtaaagaatt taaatcttct acactaaagc tagttttatt agaattacca aaactatgat
     4201 ttataatttg attaaatttg gaatagtatt gtcttatggt atcggccata tctatgtttg
     4261 tataataatt tgaaacgcct aaatcgtttg cagtgtgttc tttaaaactt gtattgaaac
     4321 tatatatctc atccaaagta gatttatgta tcttaaaatc ttcaggcaat cctgcagctt
     4381 tgttgaaatc acttcccata taaccattaa catctactcc ataaccataa gctaaagata
     4441 caatattgct tgtatctact tgtttatatt ttagagtata aatagagttt ttaaattcac
     4501 ttgatatatc ataattagga gaacttgtct tactacttat actaaaatta gtattattgc
     4561 tagtatttgt tgtattagta gaatttaata cttcacttct tgctagagtt tgtgaatttg
     4621 cattttgaat ttcatttaat ttactagcat tttgttttaa aaaagcatta gcaaaactta
     4681 ttttagaatt ttctttactt tctttattag cttttgcttg tgaaagtata gaaccatagt
     4741 ttgagttatc attgatgcta aagatactca tattaattcc ttaatttaga tttttctatt
     4801 tttttatata gataaacaag tttttaaacc tacttatcca taacccttaa accctagttt
     4861 gtcctataag attatttaat ctatccatta tagaatcagc gtaggaatta atggtgctag
     4921 gttttgcttt ccagccattg gcaatggctt gtttaatttc agcatctaaa gcccaattac
     4981 ccatagcaga ttctttagga atgttatttt catacatata taaatcacct tctgctatgc
     5041 cacgctctgc ccagtatcta aaaaagcttt taaagtcact tttacctgtc ataatactat
     5101 ctaagtgtat ggctggacca ctaaaactct ctttagccat agccctatta taagcttcta
     5161 ttgtgggatt aagtgtggtt tttggactct caataggttg accaccttga gattttaaaa
     5221 aactcataaa caaagcttct ttagaataac ttccatcttc attttgtgga taaactgaca
     5281 tatcaggatt aaactgccaa tcttcaccct tagaaacatt tttgatttct tctaaggata
     5341 gacctaaagt ctcagatgat aatcccttga tcatacatcc tgaatcaaac caaatttcat
     5401 tagcttcttt tgcttgttca ggggtttgat aaacatttga aattaaagaa tttgaaaaat
     5461 cttttaggtg agtgatattc attctattgc ttggatcatt aaagtccatc cattgcgttc
     5521 cacttacacc ataaccacta ggcatagaat ttatatctgc ttcactaaaa cttgttttat
     5581 catttggaaa actttgacct aaagcattgg aaaaaagatt ataatattgt tttatggttt
     5641 cagccatatc tatattagta taatactcgc ttacgccaaa atattgtttc atatctgcaa
     5701 tataaggttc attttcagca gcttttttaa tctcatccaa agtagattta tgtatcttaa
     5761 aatcttcagg aagtcctgca gctttattaa aatcacttcc catataacca ttagcatcta
     5821 ctccataacc ataagctaaa gatacaatat tgcttatatc tgcttgttta tattttagag
     5881 tataaataga gtttttaaat tcacttgata tatcataatt aggagaactt gttttagtag
     5941 cattattaat actaaggtta gtattactac tatttgatat gttggtagaa tttgaattat
     6001 tgcttaatgc attgttgtta cttaatattt cacttcttgc tagagtttgt gaatttgcac
     6061 tttgaatttc atttaattta ctagcatttt gttttaaaaa agcattagca aaacttattt
     6121 tagaattttc tttactttct ttattagctt ttgcttgtga aagtatagaa ttatagtttg
     6181 agttatcatt gatgctaaag atactcatat taattcctta atttagattt ttctgccttc
     6241 aatctaaata tattaaaata atataagcaa aatctgttcc actttggaat aaattatttt
     6301 cctaaataaa ttcgcaaagc cctttcatag tcttctttgg tatcaatccc catgctacta
     6361 gtgttaattt gaagcatttt tatcttttta ccattttcaa tagctcttaa ttgttccaat
     6421 ttttcagctt tttcaagggc ggaattttcc aaagtgcaaa attcacgcaa agctttaaca
     6481 ctataagcat aaattcctaa atgtccttta aaactttcct catagtctgc cctttcgtaa
     6541 ggaattttcg ctcttgaaaa atataaagca aaatcatttt tatcgcaaac cactttcacc
     6601 aaattcggat cgcttgcatc atctttactg atatctttat aacaacttgc cataaaagct
     6661 tcttgtttca aacaagaatt agcaaattct ttaaatttgg ctaaattctc gcattctata
     6721 aagggttcat ctgcttgtac attgatgatg atttcatcat cttttagacc aagcttttta
     6781 caagcttcat tgatcctatc tgtgccactt tcatgatttt tgcttgttaa aaccgcttta
     6841 aaaccatatt gtttggcaat ctctaacact ttttcatcat ctactgctat gcaaacctca
     6901 tccacactag aaacctgttt agcagtagcg ataaacatag gcacaccacc tatatcacaa
     6961 agaatttttt caggaaaacg cgttgaagct agtcttgtgg gtatgataat cattttttaa
     7021 tccattctaa aatttcacct tcgatatctc ctatctcgta gactttttca tcagcatttt
     7081 taagatcaaa aagctctaaa agatcttttt tgatatctac tttaaattct ttagccaaaa
     7141 gctcaaaatc tgctttttca tccttgcatt ctctaccaaa aagtgctttt accatactcg
     7201 gagtaaattt agtccattct gctgttgaag taataatact tggctttgaa gtatcaagca
     7261 ttttaaagca agttgctgta tgaggatcga ttaaaatttt actctcttta ataaatttca
     7321 tacattcttc atcagtacaa aaatcagctt caaaatcctc ttgtaagctt tgcaattctt
     7381 ctttttctaa tttgaaatat ttctcagttt ttaacaaatt catcaattca ttagtcctaa
     7441 gatctgaaaa tttagaaaat aacaatcttt caatatttga agaaataagt atatccatag
     7501 ctggagaaat cgtctttttt aaacttctat ccctaagatc atattctcct ttggtgaaaa
     7561 aatcagtaag gatattgtta gcattagaaa caatttttat cttagaaatt ttagctccca
     7621 ttaatttagc ataatacgct cctaaagcat tgccaaaatt cccacttggt ataagaattt
     7681 caatctcttc tttaaattca tgataaagtt ttaagcttgc atagtagtga tagatgattt
     7741 gaaataaaat tctaccaaaa tttacagaat tagcagcgca aagtccgtat cctactttgc
     7801 ttaactcgtc cttaaaagtt tcttttgcaa gcaaattttt taaagtgcgt tgtgcatcat
     7861 caaaatctcc cctgatagca aaaaccttta aatttccctt atctaaagct ctcatttgaa
     7921 gctcttgtat agcacttgtt ccaccttttg gatacatgca aagcacttta atattttcta
     7981 aattttcaaa gcttttaagc gttgcaggtc ctgtatctcc actcgtagca caaatgatta
     8041 aaattttttc attttgagaa aattcattta aaagcactcc aaaaggttgc aaagccatat
     8101 ctttaaaagc tcttgtaggc ccatgccaaa gctcgttgat gtatgtttta tcttttatct
     8161 tttttaaagc gataggtgag tttttatcat caaatttttc ataacttttt aaagctttat
     8221 caaacaaagc ctcatgtcca aattcaaaac tctctatcaa ctttaaagca aattctttat
     8281 aagataagtt cgcgtatttt tccccatcaa attgaggtaa acttaaaggc gaataaagcc
     8341 caccttgtgg agcattggga ttaactaatg catttttaaa atctacttta ttgtttatat
     8401 ttctactttc aactagcaac attaaaactc cttatatatt gatataattt ttctttgaaa
     8461 ttttctttta attctatatt caattctata atctgacact taaatccaaa atccttcacc
     8521 ttaacataat ccttaaaagt tagcattaaa gtatcacaat gatgcttatc caacaaagct
     8581 tgcaattctt cttttttaaa ttcataatga tctttaaaaa aataacaagc cctagccttt
     8641 ataaaatgct cataaagcct aaaaggcttt gcaatcgctg taactaaaac tgccttagga
     8701 ttttctttta cataagaata gcgtataaaa tccctaccct cacaagctat aaaatcagct
     8761 tttttttcat aaaatttagg caaacgataa gcaccgcttg gtaaggtaaa attaaaataa
     8821 ggcttgatct tgctttcaag caaaatatca aatttttgga tatgaaattt agaaaaagca
     8881 tcatctaaaa gcactatttt agcccctaac tcaaaagctt tttgaattcc tgctacccta
     8941 tcttcactta cgatcacacc ctttacacac tcttcaaatg cgtactccat cgcctcatcg
     9001 ccactttgtg aaa
//
LOCUS       DARAII010000072         8835 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.072, whole genome shotgun sequence.
ACCESSION   DARAII010000072 DARAII010000000
VERSION     DARAII010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8835)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8835)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8835
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.072"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1047
                     /locus_tag="SB143_001318"
     CDS             <1..1047
                     /locus_tag="SB143_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEF9749852.1"
                     /translation="DISMQSTNNLENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIF
                     TLPRGATVLDFAYEVHTKVGLHAKSAYVNRVKVPLLTELKNGDIVRVVTSNDRFYRCS
                     WVDSVKTGKAKASIREFCKQKMREINLLSAINMLSFIFSVDKNKIENWIERENLGRRI
                     RQVASDSAYLKDIVNGLKKYAKKSYWFDKYEIKEQKIGNFLLYSNHKIANVDFDYCCH
                     PKRGDAVLAFIENGNAIVHHKLCDRADKMIDNNKDMVLIKWDSNIPKSYKLIFSLENK
                     KGILAEFLAVLAKMQINLLTISLSSDINTVVDYFEITIEIPDNINPDNVRDRLKSYCK
                     ILDFTSLNDAYKEA"
     gene            1063..2268
                     /locus_tag="SB143_001319"
     CDS             1063..2268
                     /locus_tag="SB143_001319"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEF9749853.1"
                     /translation="MDIKNILAEIKRGCAEIIDEERIENLIKNYYEKGENFFVKAGFD
                     PTAPDLHLGHSVVLTKMAYLQKHGAIVQFLIGDFTGQIGDPSGKSVTRKKLDKEQVLQ
                     NAKTYEEQVFKILDPQKTQLKFNSQWLNELGATGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKCDIEMGGTDQKFNLLMGRTLQRIYNIGKEQAVMM
                     MPLLEGLDGVNKMSKSLGNYIGVTEKANDMYAKILSISDELMWRYYELLSTKSLEEIE
                     NMKKEISSGNLHPKLVKENLALEITTRFHNEESAKAAKAEFDSVHSGNALPSDIKEFE
                     IEGEIWLAKALVECGLENSTSAARRSINANAVSVNSQKVSDEQMQLGTGEYILQVGKR
                     KFAKLKVNI"
     gene            2265..3356
                     /locus_tag="SB143_001320"
     CDS             2265..3356
                     /locus_tag="SB143_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEF9749854.1"
                     /translation="MSLKSLQIGKHTIKYPIFQGGMGLGISWDKLASAVSLNGGLGII
                     SSVGTGYYENRTHISKELNAKPYGSENFYSREGLQTLINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNIIVSGAGLPTNLPEFTADFPDVALVPIISSPKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLENLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASDEFKNVLLACKKEDIELIKSPVGY
                     PARGVRTNLLDLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLEKLISVKELMDKLVNGE"
     gene            3356..5326
                     /locus_tag="SB143_001321"
     CDS             3356..5326
                     /locus_tag="SB143_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEF9749855.1"
                     /translation="MFRILVFCIALFSICFGAYENELANFDKNFIASKNDAQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNALNLDDKSYANELEESGVSKASINALRKA
                     VIKDKQKVQPDSKNVEVSSFEPPKSTSKPPQTKQESTKTQNNKPQQTKKVDKVYVLKS
                     SKTSQGVVLDLNTNLEQKDIKSFALDEKGNYRYISDFEGILEGGRKEYKFDDYRIVIS
                     QYNPKMIRIVAYAKEKIPLNFDFEDEKISISKKSQAIQKSTPSKQESKTAAKQESEKV
                     VAKQESKPVKTQEAKTNTKKEQENDEPLYVLDVDKSSNSVVLNLSDELDEKDITSFST
                     KDQKFFRQVVSFQGILEGSRKNFTFGQNAVTVTQYNPKTVRIVLSSTKEFKLFKDLDD
                     KSLTLGFSGSTSKSTSTSSKSTSKTASKNVLNSNFKSDKLIVLDAGHGGKDSGALSDK
                     KGSLKEKDIVLSTTLKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLFLSI
                     HANAAPNASKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILNFLN
                     REKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGYITH
                     PSEGKRIANKSFQDTLVKGIADGVENYFYNNR"
     gene            5323..7158
                     /gene="mnmC"
                     /locus_tag="SB143_001322"
     CDS             5323..7158
                     /gene="mnmC"
                     /locus_tag="SB143_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEF9749856.1"
                     /translation="MKKANLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYSEAFEFEE
                     NDTFIIAESGFGIGLNFFLTLKRFLQAKKRPKKLFYTSIEGFYIEKDKLREIYQKLGF
                     YEEFKEILEAFLKFYPKAKKGYYRFYFKDCFLDLIFDDIAILRELDFNADVWFLDGFS
                     PSKNSAMFDENFIAQVARLSKTNTQICTFSASSALQKNLIKYGFEIQKTKGFRKREMI
                     KAFLRKEYPTLDKEAYFQRIPSLYKNKKVAIIGSGICGATLAYELSLRDFEVSVFEKN
                     DSLGCGASGNESGILSSLILKPDVALGEFSQLAFIEASRFYKQILDLNLKGVIEFAHT
                     PLMQERFISQKDNILFKIDKNEAFLEDGGHIKPKEILKSLFEKSQAKMYFNHEYDFFQ
                     YQEDKFILHFKNQKAMQDFDILIYAMGADTKDFLVYDGMLLSKVRGQVTHLKPFLDNA
                     FALSSKAYICPSDGDLQVIGASYDRLNSNPNPQKADDEENLQNIQEFLKGDEEIIIKG
                     SRVGFRSYSSDRFAIVGAAYDEAFYKQEYKALLWTKNKAQVLPQNIPNLYLNLAHGSR
                     AFSTSVLAARYLCALINEEPLGVFKNFIPCIHPARFLIRKLKKGI"
     gene            7291..8430
                     /locus_tag="SB143_001323"
     CDS             7291..8430
                     /locus_tag="SB143_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEF9749857.1"
                     /translation="MIDYNQIESRLSALEKLPSLNPENSIPKALERSGFTRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVIWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIEKYKNKYILMVEGGIPMGDTENFLTIGPHGKS
                     GYELSKVASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVQNFGDEGAK
                     NGYCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADNVSDKIGIGVLTLTGVAIAAHAVIASMKKNEE"
     gene            8436..>8835
                     /locus_tag="SB143_001324"
     CDS             8436..>8835
                     /locus_tag="SB143_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEF9749858.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASD"
BASE COUNT         3106 a         1176 c         1786 g         2767 t
ORIGIN      
        1 gatatttcga tgcaaagtac gaacaatctt gaaaacgcag aagattataa tgctatcgag
       61 ctttatgagt atgcaaaaga tagtctttat gtagaagatg tggctgttta ttctccaaag
      121 ggtgaaattt ttactttgcc aagaggagct actgtgcttg attttgctta tgaggtgcat
      181 actaaagtag gacttcatgc aaaaagtgct tatgttaacc gtgtaaaagt ccctctttta
      241 accgagctta aaaatggaga tatagtaagg gttgtaactt ccaatgatag gttttatcgt
      301 tgttcttggg ttgatagtgt aaaaacagga aaagcaaaag cgagcataag agaattttgt
      361 aagcaaaaaa tgagagaaat caatctttta agcgcgatta atatgttaag ttttattttt
      421 agtgtagata aaaacaagat agaaaattgg attgaaagag agaatttagg cagacgcata
      481 cgacaagtag ccagtgatag tgcttatttg aaagatatag tcaatgggct taaaaaatac
      541 gctaaaaaat cttattggtt tgacaaatac gaaatcaaag aacaaaagat tgggaatttt
      601 ttattgtatt ctaatcataa aattgctaat gtggattttg attactgctg tcatccaaaa
      661 agaggcgatg ctgtacttgc atttattgaa aatggaaatg ctatagttca tcataaactc
      721 tgcgataggg cagataagat gatagacaat aataaagaca tggttttgat taaatgggat
      781 tctaatatcc ctaaatcata caaattaatc ttttctttag aaaataaaaa aggaatttta
      841 gcagagtttt tggcagtttt ggctaaaatg cagattaatt tattaacgat tagtttgtca
      901 agtgatatta atacagtggt ggattatttt gagatcacga tagaaattcc tgacaatata
      961 aatcctgata atgtccgaga caggttaaaa tcttattgta aaattttaga ttttacttca
     1021 ttaaatgacg cttataaaga agcttaaact aaaaggtaga aaatggatat aaaaaatata
     1081 cttgcagaaa tcaaacgagg gtgcgcagaa atcatcgatg aggaaagaat tgaaaatttg
     1141 attaaaaatt attacgaaaa gggagaaaat tttttcgtaa aagcaggatt tgatcctaca
     1201 gcacctgatt tgcatttagg tcatagtgtg gttttaacca aaatggcata tttgcaaaaa
     1261 cacggagcta tagttcaatt tttaatcggt gattttacag gacaaattgg cgatcctagt
     1321 ggaaaaagcg ttacgcgtaa aaaacttgat aaggaacaag tattacaaaa tgctaagact
     1381 tatgaggagc aggtatttaa gattttagat ccgcaaaaga cacaattaaa attcaattct
     1441 caatggctta acgaactagg agctactggg atagtagagc ttacttcgac ctttagtgta
     1501 gcaagaatgc tagagcgtga tgattttacg aagcgtttta aagagcaaag ccctatttct
     1561 atatgtgagt ttttatatcc tttacttcaa ggatatgata gtgttgcttt aaaatgcgat
     1621 atagaaatgg gcggaacaga tcaaaaattc aatctcttaa tgggaagaac cctgcaaaga
     1681 atttacaata tcggaaaaga acaagctgtg atgatgatgc ctcttttaga aggcttagat
     1741 ggtgtaaata aaatgagtaa aagcttaggg aattatatcg gcgttacaga aaaagctaat
     1801 gatatgtatg ctaaaattct aagcattagt gatgagttaa tgtggcgtta ttacgagctt
     1861 ttaagtacta aaagtttaga agaaattgaa aatatgaaaa aagaaatttc tagtggcaat
     1921 ttacatccta agcttgttaa ggaaaatttg gcgctagaga ttactacgcg ttttcacaat
     1981 gaagaaagcg ctaaggctgc aaaagccgaa tttgacagcg tacatagcgg aaatgctttg
     2041 ccaagcgata taaaagaatt tgagatagag ggtgaaattt ggcttgctaa agctttagta
     2101 gaatgcggtt tggaaaattc tacctctgca gcaagaagaa gcattaatgc aaatgcggtg
     2161 agtgtaaatt cacaaaaagt aagcgatgag caaatgcaac ttggcacagg ggagtatatt
     2221 ttacaagtag gtaagagaaa atttgcaaaa ttaaaggtga atatatgagt ttaaaatccc
     2281 ttcaaatagg aaaacacact ataaaatatc ccatttttca aggtggaatg gggcttggta
     2341 taagctggga taaattggct tcagcagtgt cattaaatgg cggtcttggt atcatctcat
     2401 ctgttggaac aggatattat gaaaatcgca cccatattag caaagaattg aatgctaagc
     2461 cttatggtag tgaaaatttt tattcacgag aaggcttaca aactttgata aataatgcaa
     2521 gaaaagtttg cggtgatgcg cctttgggtt gtaatatttt atgcgcaagt aatgattatg
     2581 caagaattgc tcgtgatgct tgtgaagtgg gttttaatat tatagtttca ggtgctggac
     2641 ttcctaccaa tttacctgaa tttacagcag attttcctga tgttgcttta gttcctataa
     2701 tctcttcacc taaggcttta aaaatcatct gtaaaagatg gcaaagtaga tacaaccgtc
     2761 tgcctgatgc tgttgtgctt gaaggaccta agagcggcgg acatcaaggt tttacctatg
     2821 agcaatgttt agatcctaat tatcaacttg agaatttaat cgcacctgtg gttgaagagg
     2881 ctaaaaattg gggttctttt ccagtgattg cagcgggtgg aatttgggat aaaaaagata
     2941 tagaaaatgc catttcttta ggtgctagcg gggttcaaat gggaactcgt tttataggta
     3001 cttttgaatg cgatgcaagt gatgagttta aaaatgtatt gcttgcatgt aaaaaagaag
     3061 atatagaact tatcaaatct ccagtgggat atcctgcaag aggagtaagg actaatttac
     3121 ttgatttagt cgataaaaga atgggaccaa agatcaattg tatcagcaat tgtgtagcgc
     3181 catgtggccg aggtaaagag gcgacaaagg tgggttattg tatagcagat aggctttttg
     3241 atgcatggtc gggaaaaaaa gaaacaggat tattctttac aggagccaat ggctatcgtt
     3301 tagaaaaatt aatcagtgtt aaagagctta tggataaact cgtcaatggt gaataatgtt
     3361 tagaatttta gttttttgta tcgcactttt tagtatttgt tttggggcat atgaaaatga
     3421 gcttgctaat tttgataaga attttatcgc gtcaaaaaat gatgctcaag ttaagttcca
     3481 tcatcagcta aaaagtcttt atatacaaag tgtgatcaat gaagatgaaa aaactaaaat
     3541 tgaaatttta aaaagattga ttataagttc taatgcttta aatttggatg ataaatctta
     3601 tgcgaacgaa ttagaagaaa gcggagtgag taaggctagc atcaatgctt taagaaaagc
     3661 tgtgattaag gataagcaaa aagttcagcc tgattctaaa aatgtcgagg tttcaagctt
     3721 tgaacctcct aaaagtactt caaaaccccc acaaaccaaa caagaaagca caaaaacaca
     3781 aaacaataaa ccccaacaga caaaaaaagt agataaggtt tatgttttaa aatcaagtaa
     3841 gacaagtcaa ggagtggtac ttgatttaaa taccaattta gagcaaaaag atataaaaag
     3901 ttttgccttg gatgaaaaag gaaattatcg ttatatcagt gattttgagg gtattttaga
     3961 aggcggaaga aaagaatata aatttgatga ttatcgcata gtaatttcac aatacaatcc
     4021 taagatgatt cgtatcgttg cttatgctaa ggaaaaaatt cctctaaact ttgattttga
     4081 agatgaaaaa ataagtattt ctaaaaaatc acaagctata caaaaaagta ctccgagtaa
     4141 gcaagagtca aaaacagcag caaaacaaga aagtgaaaaa gtagtcgcaa aacaagagtc
     4201 caaaccagtt aaaactcaag aagctaaaac aaataccaaa aaagaacaag aaaatgatga
     4261 acctttatat gttttagatg tagataaaag ttctaattct gttgttttaa atttaagcga
     4321 tgagcttgat gaaaaagata ttacaagttt tagcacaaaa gatcaaaaat tctttagaca
     4381 agtagtgagc tttcaaggaa ttttagaagg tagtcgcaag aattttactt ttgggcaaaa
     4441 tgctgttaca gttactcagt ataatccaaa aacagttcgt attgtactca gctcaactaa
     4501 agaatttaag ctttttaaag atttagatga taaaagtttg actttaggtt ttagtggcag
     4561 tacaagcaaa agcacttcta cttcaagcaa aagcacttca aaaactgcta gtaaaaatgt
     4621 tttaaattct aatttcaaat ccgataaact catagtctta gatgcaggac atgggggtaa
     4681 ggatagcggt gctttaagcg ataaaaaagg gagtttaaaa gaaaaagata tagttttaag
     4741 cacgacctta aagcttggaa atgagcttaa aaaacgcggt tataaagtac tttatacaag
     4801 aagttcagat aaatttatca atcttagaga tagaacaaaa tatgccaatg ataaaagagc
     4861 ggatttgttt ttatctatcc atgcaaatgc agcgcctaat gcatcaaaag caaaaagcag
     4921 tgagggtgtg gagacttttt tcttaagtcc tgctagaagt gaaagaagta aaaaagctgc
     4981 tgaaaaagaa aatcagggtg attttgaaga gattaattat ttttcaaagc aaagtatttt
     5041 gaatttttta aacagagaaa agatcgtggc ttcaaacaaa cttgctatag atgtgcaaaa
     5101 aaatatctta acccaaactc gtaagaagta taaaattgtc gatggtggag taagagaagc
     5161 tcctttttgg gttcttgttg gagctcaaat gcctgctatt ttgatagaaa ttggatatat
     5221 cactcatcca agtgagggaa aaagaatcgc aaataaaagt tttcaagaca ctttggttaa
     5281 gggtatagct gatggtgtgg agaattattt ttataacaat agatgaaaaa agctaattta
     5341 atctttaaag acaatacccc attttctttg gattttgatg atttttattt taactcaaaa
     5401 gatggtttaa atgagagcaa atttgtttat agtgaggctt ttgaatttga agaaaatgat
     5461 acatttatca ttgctgaaag tggctttggt atagggctta atttcttttt aacccttaaa
     5521 agatttcttc aagcaaagaa gcgtcctaaa aaattatttt acaccagcat tgagggtttt
     5581 tatattgaaa aagacaagct tagagaaatt tatcaaaagc ttggatttta tgaagaattt
     5641 aaagaaattt tagaagcttt tttaaagttt tatcctaagg ctaaaaaagg gtattatcgt
     5701 ttttatttta aagattgttt tttggattta atctttgatg atattgctat tcttagagag
     5761 cttgatttta atgctgatgt ttggttttta gatggttttt ctccgagtaa aaattcagcc
     5821 atgtttgatg aaaatttcat agctcaagtt gctcgacttt caaagactaa tacccaaatt
     5881 tgcacctttt ctgcttcgag tgctttgcaa aaaaatctta taaaatatgg ctttgaaatc
     5941 caaaaaacca aaggttttag aaagcgagag atgatcaaag cttttttacg caaagaatat
     6001 ccaaccctag ataaagaagc ttattttcaa agaattccaa gtttatataa aaataaaaaa
     6061 gtagccatca taggttcggg catatgtggt gcaactttag cttatgagct ttctttgcgt
     6121 gattttgaag tcagtgtttt tgaaaaaaac gatagtttag gatgtggcgc aagtggcaat
     6181 gaaagtggaa ttttaagctc tttgatttta aagcctgatg ttgctttggg tgaattttct
     6241 caacttgctt ttatcgaggc gagtcgtttt tataagcaaa ttttagattt aaatctaaaa
     6301 ggagtgatag aatttgctca tactcctttg atgcaagagc gttttataag ccaaaaagat
     6361 aatattttat ttaagattga taagaatgaa gcttttttag aagatggcgg acacatcaag
     6421 cctaaagaaa ttttaaaatc tctttttgaa aaaagtcaag caaaaatgta ttttaatcac
     6481 gaatatgatt tttttcaata ccaagaagac aaatttattt tgcattttaa aaaccaaaaa
     6541 gcaatgcaag attttgatat tttaatctat gctatgggtg ctgatactaa ggatttttta
     6601 gtttatgatg gaatgctttt aagtaaggtt agaggacagg ttactcatct aaaacctttt
     6661 ttggataatg catttgccct ttcttcaaaa gcttatattt gtcctagcga tggggatttg
     6721 caagttattg gcgcaagtta tgataggctg aattcaaatc caaatccaca aaaagccgat
     6781 gatgaagaaa atttgcaaaa catacaagag tttttaaaag gcgatgagga aatcatcatc
     6841 aaaggctcta gagtaggttt tagatcttat tctagcgata ggtttgctat tgtgggagca
     6901 gcttatgatg aagcttttta taagcaagaa tataaagctt tattatggac aaaaaacaag
     6961 gcgcaagttc tgcctcaaaa tatccctaat ttatatctta atcttgctca tggctcaaga
     7021 gcttttagca cttctgtttt ggctgcaaga tatctttgtg ctttgattaa cgaggagcct
     7081 ttgggggtgt ttaaaaattt tattccttgt atacatcctg caagattttt gatccgcaag
     7141 ctaaagaaag ggatataaat tttttagctt ttattaatat atctttaagt tttgtttata
     7201 tttttctatt gaaatttaaa ttttaataca tttttaattt gctttgtttt attattaagt
     7261 ggaataaatt acattaatta aggaatttca atgattgatt ataatcaaat agagtcccgt
     7321 ttaagcgcac ttgagaaact tccttcttta aatcctgaaa attctatacc aaaagctttg
     7381 gaaagatctg gctttactag aagagatttt atgaaatggg caggggcgat gacagcattt
     7441 ttagcattgc cagcgagttt tacccctatg gtggcaaaag ctgcagaact tgcagataga
     7501 cttcctgtga tttggcttca tatggctgaa tgtacgggct gtagcgagag tttattaaga
     7561 agtgatactc caactattga tagcttaata tttgattata tttctttaga ataccatgaa
     7621 accgttatgg ctgcagcggg ttggcaggct gaagaaaatt tagaaagtgc cattgaaaaa
     7681 tataaaaaca agtatatttt aatggttgaa ggtggtatcc ctatgggaga tacagagaat
     7741 tttttaacca tagggccaca tggaaagagt ggatatgagc tttctaaagt agcgagtgaa
     7801 aatgctttgg cgatttttgc gataggaacc tgttcgagct ttggcggaat tcaagctgca
     7861 agaccaaatc caagcaatgc tcaacctcta agcaaggtaa caagcaaaac cgttatcaac
     7921 gtgccaggtt gtccgccaag tgaaaaaaac atagtaggaa atgttttaca ttatcttctt
     7981 tttggtgagt tacctgcgct tgatgtttat aatagaccaa aatgggctta tggtttaaga
     8041 attcatgatc tttgtgaaag acgcggacat tttgatgcgg gtgaatttgt acaaaacttt
     8101 ggcgatgagg gtgcaaaaaa tggttattgt ctttataaag taggttgtaa aggtccttat
     8161 acttttaata actgctctag agaaagattt aaccaacaca cttcttggcc tatccaagca
     8221 ggacatggct gtataggttg ttctgagcca aatttttggg atactatggg accttttgaa
     8281 gagcctatgg caagtcgtaa atttgatact gtttttggat taggagctga taatgtatca
     8341 gataaaatag gcataggtgt tctaacgctt acaggcgttg ctatcgcagc gcatgcggtg
     8401 atcgcatcca tgaaaaagaa tgaggaataa aatacatgag tcaaaagata atagtagatc
     8461 caattacaag aatagaagga cacttaaggg ttgaagttgt tgttgatgat aacaatgtgg
     8521 taaaagaagc ttatgcgggc tctactttgt ggcgtggtat tgaaaccatt gttaaaggac
     8581 gcgatccaag agatgcgggt tttatgacac agagaatttg cggtgtttgt actttttctc
     8641 actataaagc gggtatagtt gcggttgaaa atgctttggg tattaccccg cctttaaatg
     8701 cgcttttaac aagaacttta atgaatgcag cgcttttctt acacgatcat atcgtgcatt
     8761 tttatcaact ccatgggctt gattgggcag atgttgtaag tgctttaagt gctgatgtta
     8821 aaaaagcaag tgatg
//
LOCUS       DARAII010000073         8788 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.073, whole genome shotgun sequence.
ACCESSION   DARAII010000073 DARAII010000000
VERSION     DARAII010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8788
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.073"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            1..272
                     /locus_tag="SB143_001325"
                     /pseudo
     CDS             1..272
                     /locus_tag="SB143_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864048.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
     gene            252..863
                     /locus_tag="SB143_001326"
     CDS             252..863
                     /locus_tag="SB143_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbM"
                     /protein_id="HEF9749859.1"
                     /translation="MGSNAFADDVLTGDTKLACEAILCLSSGTRPAECGPSLARYFAI
                     HFKKPWKTINARRAFLNLCPIQNDANIEDLVLNNLVDDVLPVSDPRQCTPNYLNTQVE
                     TKRSYSTFGIMSYRINPNMPNFCHALINHAYTDYKTPKYKCTGEFYNSLEWKLSAKLQ
                     LITQQAYESLSDDQRYMISRTCGDRNCYDYYQKIPFTKECWTY"
     gene            875..1288
                     /locus_tag="SB143_001327"
                     /pseudo
     CDS             875..1288
                     /locus_tag="SB143_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815581.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
     gene            1306..1848
                     /locus_tag="SB143_001328"
     CDS             1306..1848
                     /locus_tag="SB143_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein"
                     /protein_id="HEF9749860.1"
                     /translation="MLFENEELGQVRTIRDKNNEPLFCLNDICKILNIKKTNSVRDSI
                     NKEFDKGGVFEWHPFKTLGGIQKFIVINEPELYFVLMRSDKPKAKPFRQWVIKEVLPS
                     IRKQGYYASNNAPKLENYNKYKIPNTPYKENIIKAIMQTEQNRNCEFEELIAYEIKEI
                     YKDNKSHIEQKINFKVKGLI"
     gene            2436..3188
                     /gene="trbJ"
                     /locus_tag="SB143_001329"
     CDS             2436..3188
                     /gene="trbJ"
                     /locus_tag="SB143_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbJ"
                     /protein_id="HEF9749861.1"
                     /translation="MKKSLFGVKKATSTIIATLIIGTNNAFAGGIPVIDLSAIANQVK
                     DYAMQLQQYEQMYSQLQQQIQMVQMQKQNLERLTKEDWDNLGTVLYQTRNVMNKVNGI
                     SYDIGNVSRKFEDTYKNFEGYSNDLENATNESERNKIYSDRYKQIAETNQNTFNGTLQ
                     QLELRYQDLESEDALIAKLKQNSQNSNGNLQAVQATNDLLAYQIDEIRKLRSVIMDQS
                     NMLTNYLASQNNEKILDDAKYKKISIRTIREF"
     gene            3232..3456
                     /locus_tag="SB143_001330"
     CDS             3232..3456
                     /locus_tag="SB143_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEF9749862.1"
                     /translation="MKKIVFCIAISLTLIYLSGCGESAKTKEYYKSHLEEAKIRVAEC
                     KKMEKINETQQLDCENANEALLSKRTIKAF"
     gene            3410..4624
                     /gene="trbL"
                     /locus_tag="SB143_001331"
     CDS             3410..4624
                     /gene="trbL"
                     /locus_tag="SB143_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbL"
                     /protein_id="HEF9749863.1"
                     /translation="MLTKLYLAKELLRRFKNLIIFIFLLLPNLAFGLENSNGVLDLLQ
                     NGLESWIPLIKTACLWVFWTLVVIDLVWTFGLKALSGFEFGDFLATLIKKIMYIGIFL
                     FLFNTDQWLQILFNSFSQLATGVSNGIKITPSNIVTSGVEILLSIWEAAGLNLAKTLF
                     LLICGLIILIGFLLMAIDLLIVYLKFFLMNVIVFFALALGGLNHFKQIGLNPIMTAIK
                     IGIELLMIQGLMALAINITNSAFKEIAQNLTIDLTLQILVIALIFCMITKMVPGIIEA
                     VFNGSIGESAGASAGFRAVATMAAGAATGAAVGAVGVTRAMNAAKALHLAEGGAGGMD
                     LVKGVAKNLASAGGEHLRDNLTRGRMPNQMANRLQEKLRDIQGKASEGGISAGTPKEE
                     SYQSGVNPDVAK"
     gene            4955..5650
                     /locus_tag="SB143_001332"
     CDS             4955..5650
                     /locus_tag="SB143_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbF"
                     /protein_id="HEF9749864.1"
                     /translation="MNIFRQKQKIEKNEFDTSSNPYLNAKTEWLERYGDYITRAKNWQ
                     MVAIISLAMCFVCVLFIGYIGSQNKLIPYVIEVDKLGNTAKVGMVQNIDLKNPNVIKY
                     SLNTFIYSWRSVWGNAETQRKFIFDAYAYVEPRSKAFNYLNSEFQKNNPFTRSTKENV
                     RVKIKNIVPQNIDTWQVEWEETTTNLNEDILSKETYRGLIRIKQIIPNTEEQILKNPL
                     GIFITDLNFAKIL"
     gene            5661..6815
                     /gene="trbG"
                     /locus_tag="SB143_001333"
     CDS             5661..6815
                     /gene="trbG"
                     /locus_tag="SB143_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbG"
                     /protein_id="HEF9749865.1"
                     /translation="MKKFIFNTNTATREIHHTPTSGARLKSLDYNYTKEYNYNYDEFY
                     GIHLSSFRGLDFRHKGDDLVANTPKNYTQKLKKLSLIASLLLFIGSSAYANNLNERDF
                     SNLTPKEKKDLAIAQKWINSKTTTIQGNNGEVIFLYGEAMPSIVTAPLRLTDISLEPG
                     EVIKDVQIGDSIRWAISLSISGEEPYLVSHIIVKPTDKNLQTTMNIMTNKRVYRLNLI
                     SEAKKFMPAVSFNYTNQIIHTLEDYKNQMKAKSESKNFYKTKDDEIPSNIENLDFGYS
                     IEGNAPFKPLRIYNDGIKTYIQMPKNLKFYEAPALMVLDSSNEKQIVNYRLKYDTFIV
                     DRLFNKAILLSNVGSKQEKITITKHSNKANQDIVNNVLYDLSLQNKKENK"
     gene            6812..7255
                     /locus_tag="SB143_001334"
     CDS             6812..7255
                     /locus_tag="SB143_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749866.1"
                     /translation="MKILFLALIAFFITSCAKMNSDYFNSSFAVEETKINYNKIADDF
                     SQFIISYYAPNKTTFFINEDKNNQDFSNYFINTLRKKGYAISNDNSKKDLTFLSYQIS
                     QIDNENIVAIFNINESKINVIYKIIENKLVKPNITSFNFTPKTKG"
     gene            7259..8500
                     /locus_tag="SB143_001335"
     CDS             7259..8500
                     /locus_tag="SB143_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbI"
                     /protein_id="HEF9749867.1"
                     /translation="MLEVNMSPNKFLPKNNKRLSKVPIIIIFAIIAIVLFSIFYVALS
                     RKQNLERQTAQTTPKEETQIATNHNNDLNLYIDELQVQKAQENNIISPPMPNATQQPI
                     QETNSQTTQQPPNNTPILVQNNAIDEKEMKIKKDMQLKALLSNTKLDIKTEATDSKKN
                     QAINFNPPNNNEDINLGAINPQNTGLGLESGTNKDVQGQQFLSQKKDNGYLKYVKQKP
                     LSTYEIKAGWNIPAILITGVNSDLPGQILAQVTQNVYDSATGKYLLIPQGTKVVGAYS
                     SNIIYGQSRLLVAWNKLIFPNGDTLNLDGMQGTSQDGYTGFEDQVDNHYFRIFGSAFL
                     LSSISAGIALSDNSDTNSEKETASDKAIAQAIQQMGQVASEMIRKNMNISPTLKIRPG
                     YKFNIFVTKDIILEPLELNND"
     gene            8493..>8788
                     /locus_tag="SB143_001336"
     CDS             8493..>8788
                     /locus_tag="SB143_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEF9749868.1"
                     /translation="MIDIALIEQCKNRNVETQIIQKIIQVESNNQQFAININKVGSFI
                     LKNKKEAENLANNFIKGGYSVDIGLMQFNSNNLKSSTFSHYSVEDLLDTCKNIKA"
BASE COUNT         3499 a         1296 c         1390 g         2603 t
ORIGIN      
        1 aaaattttat ttttggtgtt aataaagcca tagggaaatc tcacccccat aaaaatgggg
       61 caaggctaaa aagccttgac tataattata caaaggagta taattataac tatgagattt
      121 gtgtaactca atttaaccac ctcttttctg aggttaaatt tagccacagg gttgcagccc
      181 tatggctaac cccaaaaaat tatactcaaa aactcaaaaa actttcttta attgcgtctt
      241 tacttttatt tattggtagt aacgcttttg ctgatgatgt tttaactggg gatacaaaat
      301 tggcatgtga agcgattttg tgcttaagta gcggaactcg tcctgctgaa tgcggtcctt
      361 cgttagctag atattttgca atacacttta aaaaaccttg gaaaacgatt aatgcaagaa
      421 gagcattttt aaatttatgc cctatacaaa atgacgcaaa catagaagat ttagtgttaa
      481 ataacttagt cgatgatgta ttacctgtaa gtgatcctag gcaatgcaca ccaaattatt
      541 taaacacgca agtagaaact aaaagaagtt attctacttt tggaattatg agctatagaa
      601 tcaatccaaa tatgcctaac ttttgccacg cattaatcaa ccatgcttat accgattata
      661 aaactccaaa atataaatgc acaggggaat tttacaattc cttagaatgg aaactaagtg
      721 caaaattaca gcttataact caacaagctt atgaaagcct ttctgacgat caaagatata
      781 tgatttctcg aacttgcgga gataggaatt gttatgacta ttatcaaaaa ataccattca
      841 ctaaagaatg ctggacttac taaaaggagt agatatgagc aatacaagca taatcaacat
      901 aaacaatcaa gaagttattt ttgaaaacaa agacgaacaa gttttttgca caagtttaga
      961 tgtggctaag gtttttggta aacaacataa agatatttta gaaataatca gaagcaaaat
     1021 aagaaataaa gaaattcaaa attttaacgg gcggaatttt tcgcccgtta aatataaaga
     1081 tgctaaagga gaaatgagac cagcatatca acttacaaaa gatggtttct catttatagc
     1141 tatgggatta acgggtagaa aagcggataa attcaaaatc gctttcatta atgcttttaa
     1201 tgaaatggaa agaattatta aaaatcaata cacaccaaaa ctagaaaatt ataataaata
     1261 taagattcct aacacattct acaaggagat agcatgagca aagttatttt atttgaaaat
     1321 gaagaattgg gacaagtaag aacaattaga gataaaaata atgagccttt gttttgccta
     1381 aatgatatat gcaaaatatt aaatattaaa aaaacaaata gcgttagaga ctctataaat
     1441 aaggagttcg ataaaggggg cgtttttgag tggcacccct ttaaaactct tggtggaata
     1501 caaaaattta ttgtaataaa tgaacctgaa ctttactttg tcttaatgag aagtgataag
     1561 ccaaaagcaa agccttttag acaatgggtt attaaagaag tcttaccaag cattagaaag
     1621 caaggttatt acgcgtctaa caacgcacca aaactagaaa attataataa atataagatt
     1681 cctaacacac cttataaaga aaatattatt aaagcgatta tgcaaaccga acaaaatcgt
     1741 aattgtgaat ttgaagagct aatcgcatat gaaattaaag aaatatataa agacaataaa
     1801 tctcatatcg aacaaaaaat taattttaaa gtaaaaggat taatatgaaa ttttaatttt
     1861 tggcgataca aaataaacat taaaaattta aaagaaagga gaagtagaag tttaagaggt
     1921 aggttaccgc ataaccccaa caagtagggc aaggctaata agccttgact attattatac
     1981 ataatagtat aataacaatg attacgcggt caatcatgga cataaaatca cccactttca
     2041 cgggtaaaat ttagccatag ggggtcagac ctacggctaa cccttaatgg gtattctaac
     2101 taaaacctac ttaaacttca aaaatataca aaatgaaaaa aaccaacata gaaattgttt
     2161 aatcaatcaa aataaacatt aaaaattaaa agaaaggaga taaataaagt tagtataaaa
     2221 gccaaagggt ttctagtaac ccccttaaag aaagggagaa gtcaaagcta ataagccttg
     2281 actattatta tacatagtag tataataatt actagaattt tgttaatcaa ggtttctcac
     2341 cttctttcta aggcaagttt tgattaacca aaggctggaa ccctttggtt aatcagcctt
     2401 aactgcaatt atactaactt atttcaaaat tacaaatgaa aaaatcttta tttggcgtaa
     2461 aaaaagccac ttcaacaata attgcaactt taattatagg aactaataat gcctttgcag
     2521 gtggtattcc tgtaattgat cttagcgcta ttgccaatca agtaaaagat tatgcaatgc
     2581 aacttcaaca atacgagcaa atgtattctc aattgcaaca gcaaatacaa atggtgcaaa
     2641 tgcaaaaaca gaatttagaa agattaacta aagaagattg ggataactta ggaacggttc
     2701 tttatcaaac ccgaaatgta atgaacaaag taaatggaat ttcttatgat ataggtaatg
     2761 tttcgcgcaa atttgaagat acttacaaaa attttgaagg ttatagtaat gatcttgaaa
     2821 acgcaacaaa tgaaagcgag agaaataaaa tttattctga tagatacaag caaattgcgg
     2881 aaacaaacca aaatacattt aacggaacat tgcaacaact cgagcttcga tatcaagact
     2941 tagaaagtga agatgcgctt atcgcaaaac ttaagcaaaa ttcacaaaat tctaatggaa
     3001 atttgcaggc tgtgcaagcc accaatgatc ttttagctta tcagattgat gagataagaa
     3061 aactaagatc ggtcattatg gatcaaagca atatgcttac taattattta gcatcgcaaa
     3121 ataatgaaaa aattttagat gatgcaaaat ataaaaaaat atctataaga acaattaggg
     3181 aattttaaat ggtaagatat aattatttaa attttataaa aggagaattc aatgaaaaaa
     3241 atagtttttt gtatagcaat aagtttaacc ttgatttatt tatcaggttg tggagaaagt
     3301 gcaaaaacga aagaatacta caaatcccac ttagaagaag caaaaataag agttgcggaa
     3361 tgcaaaaaga tggagaaaat caatgaaacg caacaacttg attgtgaaaa tgctaacgaa
     3421 gctttactta gcaaaagaac tattaaggcg ttttaagaat ttaataatat ttattttttt
     3481 attactgcct aatctagctt ttgggctaga aaattcaaat ggggttttag atctattaca
     3541 aaatggttta gaatcttgga taccactcat taaaaccgct tgtttatggg tgttttggac
     3601 tttagttgtt attgacttag tttggacttt tggtttaaaa gctttaagcg gttttgaatt
     3661 tggtgatttt ttagccactc ttatcaaaaa aataatgtat ataggcatat tcctattttt
     3721 atttaacaca gatcaatggc tacaaattct ttttaatagc ttttcacaat tggcaacagg
     3781 tgtaagcaat ggcatcaaaa taacccctag taatattgtt acttcaggag ttgaaatatt
     3841 gttatctata tgggaagcag cgggcttaaa tttagcaaaa acattatttt tactaatttg
     3901 tggtttgatt attttgatcg gatttttact aatggcaatt gatctgctga ttgtctattt
     3961 aaaatttttc ttaatgaatg taattgtatt ttttgctttg gcgttaggtg gattaaatca
     4021 ttttaaacaa ataggcttaa atcctataat gacagctatt aaaataggca tagaactcct
     4081 tatgatacaa ggtttaatgg cattagctat caatattaca aattcagcat ttaaagaaat
     4141 agcacaaaat ttaactattg atctaacatt gcaaatttta gtaatagcct taatcttctg
     4201 catgattaca aaaatggttc cgggaattat tgaagccgta tttaatggta gtattggcga
     4261 aagtgcaggg gcttcagcag gttttagagc agttgccaca atggcagcag gagctgcgac
     4321 aggtgcagcc gttggagctg ttggggttac tcgggctatg aatgcagcta aagccttaca
     4381 tttagcagaa ggtggagctg gtggaatgga tttagttaaa ggagtagcta aaaatctagc
     4441 aagtgcggga ggcgaacatt taagagataa tcttacaaga ggtagaatgc caaaccaaat
     4501 ggctaatcgc ttacaagaaa agcttagaga tatacaagga aaagctagtg aaggtggtat
     4561 atcggcagga acaccaaaag aagaaagcta tcaatcagga gtaaatcccg atgttgcaaa
     4621 ataataaaac taacgcaagg gtggtaagtc cttgcattag cgtttcacaa acggcgataa
     4681 tttacttttt aggcttaaaa aagatttttc ttatttcttc tctaaaaagt gtaattacta
     4741 ctgcaattac cgcaatgaaa agattaaaaa gttccattat ggactcctgt aaaataaagt
     4801 gtttccaccc caagcccaac ttaatagcca aaaaaaaagc tcaattccta ttgaaagaat
     4861 tgagccaaac acattataaa caggttgtga aacttttagt ccatctacca aatggattaa
     4921 attaattata tcataaaaag gagtaaaaaa aataatgaat attttcagac aaaagcaaaa
     4981 gatagaaaag aatgagtttg acacttcaag taatccttat cttaatgcaa aaaccgaatg
     5041 gctagaaaga tacggagatt atatcactcg tgctaaaaac tggcaaatgg tagcgataat
     5101 tagtttagcc atgtgctttg tatgtgttct ctttataggc tatatcggct ctcagaacaa
     5161 gcttatccct tatgttattg aagttgataa gttaggcaat acagctaaag taggaatggt
     5221 gcaaaatatc gacttaaaaa acccaaatgt aataaagtat agtctaaata cttttattta
     5281 ttcttggcgt tcggtttggg gaaatgccga aactcaaaga aaattcatat ttgatgccta
     5341 tgcttatgtg gagccaagat caaaagcatt taattattta aattcagaat ttcaaaaaaa
     5401 caatcctttc acacgatcta caaaggaaaa tgtgcgagtg aaaattaaaa atatcgttcc
     5461 acaaaatatt gacacttggc aagttgaatg ggaagagacg actacaaatt taaatgaaga
     5521 tattctttct aaagaaactt atcgaggatt aatccgaatt aaacaaatca ttccaaatac
     5581 agaagaacaa attttaaaaa atcctttagg gatttttatt acagatctta attttgcaaa
     5641 aattttataa ggagttaaat atgaaaaagt ttatttttaa tacaaataca gccacaaggg
     5701 aaatccacca caccccaaca agtggggcaa ggctaaaaag ccttgactat aattatacaa
     5761 aggagtataa ttacaactat gatgaatttt atggcattca tcttagctcc tttaggggct
     5821 tagattttcg ccacaagggt gatgaccttg tggcaaacac cccaaaaaat tatactcaaa
     5881 aactcaaaaa actttcttta attgcgtctt tacttttatt tattggtagt agtgcatatg
     5941 ctaacaatct aaatgaaaga gatttttcaa atctcacacc aaaagaaaaa aaagatttag
     6001 caatagctca aaaatggata aattcaaaaa ccactactat acaaggaaat aatggagaag
     6061 ttatttttct ttatggcgaa gctatgccaa gcattgtaac tgcaccttta agacttactg
     6121 atatttcttt agaacctgga gaagtgatta aagatgttca aataggcgat agtataagat
     6181 gggctatatc tttaagtatt agcggggaag aaccttattt agtttctcat attatagtta
     6241 aacctaccga taaaaaccta caaacaacca tgaacataat gacaaataaa cgagtttatc
     6301 gcttaaattt aatatctgaa gctaagaaat ttatgcctgc agtttcattc aattatacaa
     6361 atcaaatcat tcatacacta gaagattata aaaaccaaat gaaagcaaaa tcagaatcta
     6421 aaaatttcta taaaacaaaa gatgatgaaa ttccaagcaa tattgaaaat ttagactttg
     6481 gttatagtat tgaaggtaat gcacctttta aacctttaag aatttacaat gacggcataa
     6541 aaacttatat tcaaatgcca aaaaatttaa aattctatga agcacccgca cttatggttt
     6601 tagattctag taatgaaaaa caaatcgtaa attatcgctt gaaatatgat acttttattg
     6661 tagataggct ttttaacaaa gcgattttac tttcaaatgt aggctcaaaa caagaaaaaa
     6721 tcacaatcac aaagcattca aacaaagcta atcaagatat agttaataat gtgctttatg
     6781 acttatcact ccaaaataaa aaggaaaaca aatgaaaatt ttatttttgg cgttaatcgc
     6841 tttctttata acctcgtgtg ctaaaatgaa ttcggattat tttaactcta gctttgcagt
     6901 tgaagaaaca aaaataaact acaataaaat tgcagacgat ttttcgcagt tcattatttc
     6961 atattacgca cctaacaaaa ctacattttt tatcaatgaa gataaaaata atcaagattt
     7021 ttctaactat tttatcaata ccttaagaaa aaaaggttat gcaataagca atgacaattc
     7081 taaaaaagat ttaaccttct taagctatca aatttcacaa attgataatg aaaatatagt
     7141 tgcgatattt aatatcaatg aaagtaaaat caatgtgatt tataaaatca tcgaaaataa
     7201 acttgtaaaa ccaaatataa caagttttaa ttttactcca aaaactaaag gttaaattat
     7261 gcttgaagtg aatatgtctc ctaacaaatt tttaccaaaa aataacaaaa ggctttcgaa
     7321 agttcctatt ataataatat ttgcaatcat cgcaatagta ttatttagca tattttatgt
     7381 agccttatca agaaagcaaa atttagaaag acaaactgcg caaaccacac caaaagagga
     7441 aacacaaata gctacaaatc ataacaatga tcttaattta tatattgacg aattacaagt
     7501 tcaaaaagca caagaaaata atataatttc accacctatg ccaaatgcca cacaacaacc
     7561 tattcaagaa acaaattctc aaactacaca acagccacct aacaatactc ctatccttgt
     7621 ccaaaacaat gctatagatg aaaaagaaat gaagattaaa aaagatatgc agttaaaagc
     7681 tttattaagc aataccaagc ttgatatcaa aacagaagca acggatagca aaaaaaacca
     7741 agcaattaat ttcaatccac ctaataataa tgaagatatt aatcttggag caatcaatcc
     7801 acaaaataca ggactgggct tagaaagtgg cacaaacaaa gatgtgcaag ggcaacaatt
     7861 tttatctcaa aaaaaagaca atggctattt aaaatatgta aaacaaaaac cattaagcac
     7921 ttatgaaatt aaagcgggtt ggaatatacc tgccatttta attacaggtg ttaattcgga
     7981 tttacctggt caaatattgg cacaagtaac acaaaatgtt tatgatagcg caactggaaa
     8041 atacctttta attccacaag gaactaaagt tgtaggagct tattcaagta atattattta
     8101 tggtcaatca agactcttag tagcatggaa taagcttatt tttccgaatg gtgatacctt
     8161 aaatcttgat ggcatgcaag gaacttcaca agatggatat acaggctttg aagatcaagt
     8221 ggataatcat tattttagga ttttcggctc tgctttttta ctttcatcga tcagcgcagg
     8281 tattgcgttg tctgataatt cagacacaaa cagcgaaaaa gaaactgctt cggataaagc
     8341 aatcgcacaa gctattcaac aaatgggtca agtcgcaagc gagatgataa gaaaaaatat
     8401 gaatatcagc cctactttaa aaattcgtcc tggatataaa tttaatatct ttgtaacgaa
     8461 ggatattatt ttagagcctt tggagttaaa taatgattga tattgctcta attgaacaat
     8521 gcaaaaatag aaatgtagaa acacaaatca tacaaaagat tattcaagta gaaagcaaca
     8581 atcaacaatt tgcaattaac attaataagg ttggctcttt tatattaaaa aataaaaaag
     8641 aagctgaaaa tttagcgaac aatttcatta aagggggata tagtgtagat attggactaa
     8701 tgcaatttaa ttctaacaat cttaaatctt caacattctc acattacagt gtagaagatt
     8761 tattagatac ttgtaaaaat attaaagc
//
LOCUS       DARAII010000074         8455 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.074, whole genome shotgun sequence.
ACCESSION   DARAII010000074 DARAII010000000
VERSION     DARAII010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8455
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.074"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1200
                     /locus_tag="SB143_001337"
     CDS             <1..1200
                     /locus_tag="SB143_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEF9749869.1"
                     /translation="IPQVYDDTLTQNAAPYVVDEVIKQLSPSIKDLKTGGYKITLNID
                     LDVQEMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLALVGGVDYEKSNY
                     NRATQSTRQPGSSFKPFVYQAAINLGYSPMSEIADISRIFEGGAGDNKDWKPKNDGGK
                     FLGLITLKEALTRSRNLATINLALGMGLDVLHSKLVEFGFRDIPANLSIVLGSFGISP
                     LEYSKFYTMFGNYGVIKEPQIIKQVQDRNDQIIMEFNSNEYRVSDEAQSFLVLDMMRN
                     VVEHGTGRNARVEGIEIAGKTGTTNKNIDAWFCGLTPEIEALIWYGNDNNKPMRYTEG
                     GARTSAPVFKEFLNKYLEKFPDTTRKFSIPNGVYRGSYKGQNAYYTIKSPLPRTNMKF
                     NESEILF"
     gene            complement(1243..3816)
                     /locus_tag="SB143_001338"
     CDS             complement(1243..3816)
                     /locus_tag="SB143_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9749870.1"
                     /translation="MANIQEFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALIVDS
                     SSILNQICNKFNISKEALELEIKSRISNLATSSNVNRENVRFSNEFINSLESAKGLMS
                     ANGDNYLSVDTWLISESEKNPIREILAKFIDIKEFQKELQNLRAGRKIESKTSDETLD
                     SLNKFGIDLTAKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKARKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQSALNSQFENEKAVFDSISAKKKEIDSLKNEAVFAKNKGEFQKAAELEYGKIPE
                     CEKEVANLEEKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYVGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNILLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQKSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADKLNENDEIVIDAKNDEIVIEK
                     A"
     gene            complement(3951..4232)
                     /locus_tag="SB143_001339"
     CDS             complement(3951..4232)
                     /locus_tag="SB143_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEF9749871.1"
                     /translation="MKHTHTHSPKHIKAISNRLSRTIGHLEAIKKMVERDEDCSDILI
                     QLAAVKAAVNNTAKAILKEHLAHCMYHAVMEKDTQSIEDLNKAIDMFVK"
     gene            4376..5713
                     /locus_tag="SB143_001340"
     CDS             4376..5713
                     /locus_tag="SB143_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEF9749872.1"
                     /translation="MLEFILSSKRFLAAITGFTGSLALCVFLASNLQAKPKNPSDLMQ
                     QRLESLDKLTKTLAIVEQYYVDDENITDLIDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTSGEFGGLGITVGMKDGALTVISPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTRDIIKVESVYAKLIEDENILYLRVTNFD
                     KNVVDMTSKELKKHPNVKGVILDLRNNPGGLLNQATGLVNLFVDKGVIVSQKGRVTSE
                     NQEYTANSKNKISDSSLVVLVNGGSASASEIVSGALQDLKRAIIVGENTFGKGSVQQI
                     IPINETEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFNIKESDLKQHL
                     ESELEKLDKNEKKEDKKEQKNDKNIITQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            5716..6426
                     /locus_tag="SB143_001341"
     CDS             5716..6426
                     /locus_tag="SB143_001341"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEF9749873.1"
                     /translation="MKKKELLYEGKGKKLYTTEDENFLISEFKDDLTAFNAEKKGSES
                     GKGALNCKISTELFHLLEKNGIKTHLVETISDNEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKNDELGDPFINDEHCLILNLVQNEAQIKEIKEMAKKIN
                     AILTPFFDAKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            6435..6680
                     /gene="purS"
                     /locus_tag="SB143_001342"
     CDS             6435..6680
                     /gene="purS"
                     /locus_tag="SB143_001342"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEF9749874.1"
                     /translation="MKILVNVFLKNGVLDPQGKAIEKALHSLNFNEIKEARVAKQIVL
                     DLDESDEQKAKERVKSMCEELLVNSVIEDYELIVSEK"
     gene            6680..7324
                     /gene="purQ"
                     /locus_tag="SB143_001343"
     CDS             6680..7324
                     /gene="purQ"
                     /locus_tag="SB143_001343"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEF9749875.1"
                     /translation="MKVAIIRFPGTNCEFDTQYAFEKLGVKAQIIWHEEKEIDADLVV
                     LPGGFSYGDYLRCAAIAKIAPAMQGVIAHAKRGGYILGICNGFQILLESGLLEGAMKH
                     NNNLSFISKNQNLRVVSNDNVFLKNFQKDEIINLPVAHGEGNYYADEATLKKMQDKDL
                     ILLKYEPNPNGSVLDIAGICDENKKIFGLMPHPERACDKILGNDIGLRMLEGFM"
     gene            7321..>8455
                     /locus_tag="SB143_001344"
     CDS             7321..>8455
                     /locus_tag="SB143_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749876.1"
                     /translation="MRIIFFLVFVCLSLFARSEISVFDGQDENMQRELQKLPKEEQQI
                     YQNIAPSDENSDFDSNIYDPFIPQSSLVLTTDDYVNKVYVGEVFPIVLHAKITEDTNF
                     DFNITLQKSKDLIFLNPDLKWEYIKGDYRAVLWFEAKTSNANLEQISVSLLRNGKIFQ
                     SASISIGAIHFENTPNNKNFSHLVASSLEVKKIKTSYFDDSSIITMIELSATNANLKS
                     FFVNGVEKQGIENLKGDFNSSNAFYYAIFPSTKTDFEFSYFNKDTKKMENMSFKLKIS
                     DDEVSTQSDLNPTNRDFNIYKQYALWALTLILALWFVWKKNYFILAGALLCFILGFLV
                     DTNTENAILKAGSRAKILPTESSTYFYTANSNEKVEVLGKRLHY"
BASE COUNT         2800 a         1269 c         1471 g         2915 t
ORIGIN      
        1 attcctcaag tttatgatga tactttaacg caaaatgcag ctccttatgt tgtagatgag
       61 gtgattaagc aattaagtcc tagcattaaa gatcttaaaa caggcggcta taaaatcact
      121 ttaaatatag atttagatgt gcaagaaatg gctcaaaatg ccttaaaatt tggttatgat
      181 gaaatagtaa agcgtgataa ggatgcaaat ttaagtacgc taaatggagc tatggtggtg
      241 gttaatcatc aaagtggaga tgttttagcc ttagtgggtg gggttgatta tgaaaaaagt
      301 aattacaacc gagctactca aagcacacga caaccaggca gctcctttaa accttttgtg
      361 tatcaagcag ctattaatct aggctattcg cctatgagtg agattgcaga tatttctaga
      421 atttttgaag gtggagcagg ggataataaa gactggaaac ctaaaaatga tggaggtaaa
      481 ttccttggct tgattaccct aaaagaagcc ttaacacgtt caagaaacct agctactatc
      541 aatcttgctc ttggtatggg acttgatgtg cttcattcaa agcttgtaga atttggcttt
      601 agggatattc cggctaattt atcgattgtt ttaggaagct ttggaatttc tcctttggag
      661 tattctaaat tttatactat gtttggaaat tatggagtta taaaagagcc acaaatcatt
      721 aagcaagtac aagatagaaa tgatcaaatt attatggaat ttaactcaaa tgaatacaga
      781 gtgagcgatg aagcgcaaag ctttttggtt ttggatatga tgagaaatgt tgtagagcat
      841 ggtacaggac gcaatgcaag ggttgaaggc atagaaatag caggcaaaac aggaactacc
      901 aataaaaata tcgatgcttg gttttgtggc ttaacacctg agattgaagc tttgatttgg
      961 tatggaaatg acaataataa gcctatgcgt tatacagagg gcggggctag gacttctgct
     1021 cccgtgttta aggaattttt aaataaatac ttagagaaat ttcctgatac tacaagaaaa
     1081 ttcagcattc caaatggggt atatagagga agttataagg ggcaaaatgc ttattatact
     1141 atcaaatcac ctctgccaag aacgaatatg aaatttaatg aaagtgagat tttattttaa
     1201 aagtatgtga agaaatagaa aaatctattt cttctaaaag agttaagctt tttcgataac
     1261 aatctcatca ttttttgcat cgataacaat ctcatcattt tcattaagct tgtctgcaag
     1321 tatcatatcg cttagcttgt cttcgattaa atcataaata gcccttctta aaggtctagc
     1381 accaaagtca ggatcaaatc cgtccttagc gattaaaagc gcagcatttt cactaagact
     1441 tgcttttata cccttatttt ccaaactttt ttgcaagtct ttaaataaaa gtttaactat
     1501 ctcatatgcc tcatcttttc caagtggatt aaaggtgatg atatcgtcta agcggtttaa
     1561 aaattcaggt ttaaagaaat tttttaactc attttttacc gcatcttctt gttcttttcc
     1621 gcttaaattc atgatagcac ttgaggcgat attagaagtt aaaataataa tggtattttt
     1681 aaaatccaca gttacaccct tgctatcagt tgccctacca tcgtctaaaa ttcctaaaag
     1741 tatattaaac acatccttgt gggctttttc gacttcatca aataaaagca cgctataagg
     1801 ttttctacgc accgcttcag taagctctcc gccttcttca tgccctacat aacctggagg
     1861 cgctcctaag agtcttgaaa cgctatgttt ttccataaat tcactcatat caaagcgaat
     1921 cattgctttt tcatcatcaa ataaaaattt cgccaaagcc ttagcagatt gtgtttttcc
     1981 tactcctgta ggccctaaaa ataaaaagct tcctataggc ttattgtctg catttaatcc
     2041 tgctttattg cgtttgatag ctcttgctaa agcgcttaga gccttatctt gcccaatcac
     2101 actttctttt aagtgttttt ctacttccaa aaatttttgc ttctctgaag tcagcatttt
     2161 ttgcacgcta attcctgtcc atttgcttaa aattccagca accaaatctt catccacttg
     2221 atttttaagc aagactccat tttcgctcat ttttttccat ttttcttcta aatttgccac
     2281 ttctttttcg cattctggaa ttttgccata ttctaattct gcagcttttt ggaattcacc
     2341 cttatttttt gcaaaaacag cttcgttttt aagactatcg atttcttttt tctttgcgct
     2401 tatgctatca aaaactgctt tttcattttc aaattgtgaa tttaaagcac tttgtttttc
     2461 ttttaaattg gccagttctt tggcaatttc atctagtctt ttttgatttt tttcatcatt
     2521 ttccatcttt agagcttcat tttctacttc taaagtttct atgtctttgc gtgcctttct
     2581 caaagagctt ggttcgcttt caatttgcat tttaagttca gccgcagctt catcgattaa
     2641 atcaattgct ttatcgggta aaaaacgatc ggcaatatag cgttttgaaa gcttagctgc
     2701 cgctactaaa gcactatcat tgatggtgac attgtgatga atttcaagtt tttctttaat
     2761 accccttagc attgctaaag cttcatttac gctaggttcg cctacattta caggttgaaa
     2821 acggcgttgc aaggccgcat ctttttcaaa gtatttacga tattctttaa gagtggttgc
     2881 tcctatggtg tgaagttcgc ctcttgcaag tgccggcttt aaaatatttg cagcatccat
     2941 acttccttcg cttgctcctg cgcctactat ggtgtgaatt tcatcgataa aaagtatgat
     3001 attttcactt ttaatgacct catttaccac cgcttttaat ctatcttcaa attctccacg
     3061 atattttgct cctgcgatca atgcactcat atcaagagct atgacttttt tattttgtaa
     3121 agattttggc acatcttttt tgataattct ttgtgctaaa gcttctacga tcgctgtttt
     3181 tcctactcct ggttcaccta aaagtatagg gttgtttttt gttttgcgta taagaatttg
     3241 cattaagcgt tcgatttctt cttctctgcc tataacagga tcaagctttc cttcacttgc
     3301 ttttgcggtt aaatctatac caaatttatt taagctatct agggtttcat cacttgtttt
     3361 gctttcgatt ttgcgtcctg ctcttaaatt ttggagctct ttttgaaatt ctttaatatc
     3421 tataaatttg gctaaaattt ctctaatagg atttttttcg ctttcgctta taagccaagt
     3481 atctacactt aagtaattat caccattggc actcataagt cctttagcac tttctaagga
     3541 attgataaat tcattagaaa aacgcacatt ttcacgattg acattagagc ttgttgcaag
     3601 atttgaaatt ctgcttttga tttcaagttc taaagcttct tttgaaatat taaatttatt
     3661 acaaatttga tttaaaatac ttgaactgtc tacaattaaa gcccataaaa gatgtaaagg
     3721 gacaacttca ttatttttag aatgaatcgc caaagacgct gcactttcaa ggtttgaaag
     3781 catattgtcg gttaaaaatt cttgtatatt tgccattgta tatccttttt caagttttat
     3841 atatgaagta ttatataact ttagtcaaat aatgtcaagt tattttataa aatttttgca
     3901 ataaaattaa gtatatttta gaaagtattg aattttaagc acttaaatag ctattttaca
     3961 aacatatcaa tagccttgtt taaatcctct atgctttgcg tatctttttc catcaccgca
     4021 tgatacatac aatgggctaa atgttcttta agtatggctt tagcggtatt gttaaccgct
     4081 gctttaaccg cagcaagctg gataagaata tcactacaat cctcatctct ttcaaccatt
     4141 tttttaatag cttctaaatg tcctatagtg cgacttaaac gattacttat ggctttgata
     4201 tgttttggag aatgcgtatg agtgtgtttc atttatattc tttcttgctt tgaaattaaa
     4261 aaatataaaa tattttagca ttaatttttt ttaaatccat taaacttata acaaatttag
     4321 tattatttac gaatttttaa gcaaaagtta ttaaaatttg ggcttaaaat atttaatttt
     4381 ggagttcatt ttgagtagta aaagatttct agccgctatt acaggtttta caggctcttt
     4441 ggctctttgt gtttttttag caagcaacct acaagcaaaa ccaaagaatc catctgattt
     4501 aatgcaacaa cgcttagagt ctttagataa attgactaaa actttggcta tagttgagca
     4561 gtattatgta gatgatgaaa atattacaga tttgattgat aaatcacttt ctggactttt
     4621 gagcaatctt gatgcgcatt cttctttttt aaatgaaaaa gattttaatg atatgaaaat
     4681 tcaaacaagt ggtgaatttg gtggacttgg gatcactgta ggtatgaaag atggcgcctt
     4741 gactgttatt tctcctatag agggaactcc agcagataaa gctgggatta aatcaggcga
     4801 tataatatta aaaatcaacg atgaggctac tttgggaatc aatttaaacg atgcagtgga
     4861 taaaatgcgc ggaaaaccaa agacgcaaat cactcttact atatttagaa aaggagcaac
     4921 taagcctttt gatgttactt taacgcgtga tattatcaaa gtggaaagtg tttatgcaaa
     4981 gcttatcgaa gatgaaaata tactttattt aagagttacg aattttgata aaaatgttgt
     5041 ggacatgaca agtaaagagc ttaaaaaaca tcctaatgta aagggtgtaa ttttggattt
     5101 aagaaataac cctggcggtc ttttaaatca agctacaggg cttgttaatt tatttgtaga
     5161 taaaggagta attgtttctc aaaaaggacg cgttacaagt gaaaatcaag agtatacagc
     5221 aaattcaaaa aataaaattt ctgacagttc tttagtagtg cttgtgaatg gcggaagtgc
     5281 gagtgctagt gagattgtta gtggggcttt gcaagatctt aagcgagcta taatcgtagg
     5341 agaaaatact tttggaaaag gcagtgttca gcaaattatt ccgatcaatg aaactgaagc
     5401 tttaagactt actattgcaa gatattattt gccaagtggg cgcactatac aagcagtagg
     5461 tgtaaaacct gatattgaag tatttccagg aaaagttaat actcaagaag atggctttaa
     5521 tatcaaagaa agtgatttaa agcagcattt agaaagtgaa ttggaaaaac ttgataaaaa
     5581 tgagaaaaaa gaagacaaaa aagagcaaaa aaatgataaa aatatcatta ctcaaaagca
     5641 aattaatgat gatgcgcagt taaaatctgc catagatacc attaaaatat taaatattaa
     5701 acaaggacaa taattatgaa aaaaaaagaa ttactttatg aaggtaaggg taaaaaactc
     5761 tacacaaccg aagatgaaaa ttttcttata agcgaattta aagacgattt aacagccttt
     5821 aatgctgaaa aaaaaggaag tgaaagtgga aagggtgcat taaattgcaa aatcagcaca
     5881 gaactttttc atttgcttga aaaaaatggc ataaaaactc atttagttga aaccattagt
     5941 gataatgagc aagtggtaaa aaaatgcaaa attgtgccta ttgaggttat agtgcgcaat
     6001 gttgcaacag gatcgcttac aaaaagattg ggtattaaag acggcacagt tttgcctttt
     6061 gctttggtgg aattttgtct taagaacgat gagttaggag atccttttat caatgatgag
     6121 cattgtttga ttttaaattt agtacaaaat gaagcacaga ttaaagaaat taaagaaatg
     6181 gctaaaaaaa tcaatgcgat tttaactcct ttttttgatg ctaaaaattt aagacttatt
     6241 gactttaaaa ttgagctagg tttaactaaa gacaatgagc ttgttttagc cgatgaaatc
     6301 agtcctgata gctgtagatt ttgggataaa tttagcaatg aaaagctaga caaagataga
     6361 tttcgtcaag atttaggaaa tgttaaaatg gcctatgaag aagttttaaa aagaatttta
     6421 aactaaggaa tatcatgaaa atacttgtca atgttttttt aaaaaatggt gttttagatc
     6481 ctcaaggaaa agctatagaa aaggctttac attctttaaa ttttaatgaa atcaaagaag
     6541 caagagtagc caaacaaatc gtgcttgatt tagatgagag tgatgaacaa aaagcaaaag
     6601 aacgcgtgaa aagtatgtgt gaagagcttt tggtaaatag tgtaatcgaa gattatgagc
     6661 ttattgtaag tgagaaatga tgaaagttgc tattattaga tttcctggaa caaactgcga
     6721 atttgatacc caatatgctt ttgaaaaact tggtgtaaaa gcacaaatca tttggcatga
     6781 agaaaaagaa attgatgcag acttagtggt tttgcctgga ggattttcgt atggagatta
     6841 tctaagatgt gcagccattg ctaaaatcgc tcctgctatg caaggtgtta tcgcacatgc
     6901 gaaaagagga ggatatattt taggaatttg caatggcttt caaatcttgc ttgaaagtgg
     6961 acttttagaa ggtgctatga agcacaataa taatttaagt tttatctcca aaaatcaaaa
     7021 tttaagagtt gtttcaaatg ataatgtttt tttaaagaat tttcaaaaag atgaaattat
     7081 caatcttcct gttgctcatg gtgaaggaaa ttattatgca gatgaagcta ccttgaaaaa
     7141 aatgcaagat aaagatttaa ttcttttaaa atacgaacca aatcctaatg gctctgtgtt
     7201 ggatatcgca ggaatttgtg atgaaaataa aaaaattttt ggccttatgc ctcatccaga
     7261 gcgcgcttgc gataaaatat taggtaatga tataggctta agaatgctcg aaggttttat
     7321 gtgagaataa tatttttttt agtttttgtt tgtctgagtc tttttgctcg aagtgaaatt
     7381 tctgtttttg atggtcaaga tgaaaatatg caaagagaat tgcaaaaact tccaaaagag
     7441 gaacagcaaa tctatcaaaa tatcgctcca agtgatgaaa attccgattt tgatagtaat
     7501 atatatgatc cttttatacc tcaaagttca ttagttctta ctactgatga ttatgttaat
     7561 aaagtatatg ttggagaagt atttcccata gttcttcatg ctaagattac agaggataca
     7621 aattttgatt ttaacatcac tttgcaaaaa agcaaggact tgatcttttt aaatcctgat
     7681 ttaaaatggg aatatattaa aggcgattat agggctgttt tgtggtttga ggctaaaact
     7741 tcaaatgcaa atttagaaca gatttcagtc agccttttaa gaaatggaaa aatttttcaa
     7801 agtgctagta ttagtatagg tgctatccat tttgaaaata cacctaataa taaaaatttt
     7861 tcacatcttg tggcaagttc cttggaggtt aaaaaaatca aaaccagtta ttttgatgat
     7921 tcaagcatta ttacaatgat tgaactaagc gccacaaatg caaatcttaa gagctttttt
     7981 gtaaatggag tcgagaaaca gggtattgaa aatttaaagg gtgattttaa ttcttctaat
     8041 gctttttatt atgctatttt tccatcgact aaaacagatt ttgaattttc ttattttaac
     8101 aaagatacta aaaaaatgga aaatatgagc tttaagctta aaatcagcga tgatgaggtg
     8161 agcactcaaa gcgatttaaa tcctacaaat agggatttta atatttataa acaatatgct
     8221 ctttgggctt tgactcttat tttggcatta tggtttgttt ggaagaaaaa ttattttatt
     8281 ttagcaggag cgcttttatg ttttatactt ggttttcttg tagatactaa cacagaaaat
     8341 gcaattttaa aagcgggttc tagggctaaa attttaccaa ctgaatcatc aacttatttt
     8401 tatacagcaa attctaacga aaaggttgag gtgttaggca aaagacttca ttatg
//
LOCUS       DARAII010000075         8355 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.075, whole genome shotgun sequence.
ACCESSION   DARAII010000075 DARAII010000000
VERSION     DARAII010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8355
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.075"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..2013
                     /locus_tag="SB143_001345"
     CDS             <1..2013
                     /locus_tag="SB143_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9749877.1"
                     /translation="YKHILKNILTSNNFSPVVAEPEVLKPMLYELFNGNHDINNIPNY
                     DRTCYLNRQVIMPTTEILIKDDELKIDGRSFISLTPQSFPQEAHIGDFGEKLGDYISR
                     ALDNNQFKDTFLITASVCALSKKKTARVKDNHSMLLTQKWSENIFRQFAAARKESVSI
                     LERIDNQKEKLYAFDLNVIVSGDNYNEASLNASTIISYWNKGGSKAIVLDEALGIHQL
                     NLIASLPMGINKEYMFDITVKYRSMFPDQISQFIPLEADFKLNIPNLILFSRRAQIAG
                     LDLFVSSSNYNAYLVATSGAGKSVLLNMLAFNSYARNDRIFIIDQDNSFINICDAVGG
                     QYLALDPSKPISFNPFSGLKNNDRDSFAEDLEYLSRLIYMLGSSKNQDRALEDERLIK
                     AKTQAIMEELFLSKGNTMEVTDIRDELAKVDDQRFRDFADQLRPFCKEGIYGKYFNGP
                     CEFNIEKEFIVTEFKGLEGYDDLKDPLIMLLIYHINQLMYMSTDRKSRIQIIIDEAHR
                     FLGKNPKMDDFIEQAYRRARKYGASAIIATQGFDDIYNAKDGGLSRAGTVIVNNSAYK
                     IFMKQTETSVNMLIKSEVFSLSETDKEILRSIRTIKGEYSELFLMTPDDVKLPYRLVV
                     DKYFYYLTTTDATDKAKIKELTDQGIPLGEAIDLLANTKTKSNEAK"
     gene            1967..2503
                     /locus_tag="SB143_001346"
     CDS             1967..2503
                     /locus_tag="SB143_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S26 family signal peptidase"
                     /protein_id="HEF9749878.1"
                     /translation="MIYLPILRQKAMKLSKNQIRTLINKALFVLIAFIIGNIVVSALS
                     QFYGIGIIHTKSIDKDVFIYQKKFQGDLKDSLIYFSLPVQTRYFDKNSNFGKYVRCEE
                     GQTLSVKDLKYYCDNVFLGIAQKTDKDGNKVEQFIFNGVIPKDKFFVMGTHPRSFDSR
                     YWGFVDRKDIKGVSIWAF"
     gene            2491..3957
                     /locus_tag="SB143_001347"
     CDS             2491..3957
                     /locus_tag="SB143_001347"
                     /inference="COORDINATES: protein motif:HMM:NF017892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraH"
                     /protein_id="HEF9749879.1"
                     /translation="MGILKKRVIISAIACAFLLPSALNANLSSFIQNNLGSSITSENS
                     GYYKSQVSGFISGGSSRIRWGGGETIRPYSVTAPSFNVGCSGIDMIFGGFSYLNFEYL
                     VEKLKKIASAAPAYAFQMALSTLCKDCQTIMDELEKIANAINSMNFDTCQMTTNWTNK
                     FGKMLSSNTESGQNDSWLTSFAKGMEGTAQTVQNFAKEANAFVNGTTPDKSGETNAAK
                     ILKQGSIIQKIIEKGKASFFADAFGENQYEDILRGVFGDLVAYTEKSTSITNKKMSDP
                     EKVMLIGPTLNTDKFIEALWNKNGENKSITLEFTAYTINKDENGLYQEPVGKETKVTI
                     DKDIRSLLIEKFKAIVTKIKAKTSLDDADKNLINAAPLPVADILNIEASTGLNGDAVY
                     EFVALLMVDAFVNELFNEFITNINTVQGLDPKFSSDHKDDLAKFNAAVAKVQETTRAL
                     LSENAQAIIRDNQQVDSIRKIISNFYGVSDIFNYGTGR"
     gene            3966..5156
                     /locus_tag="SB143_001348"
     CDS             3966..5156
                     /locus_tag="SB143_001348"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749880.1"
                     /translation="MRKYLFLIFVVCNFLQAANNAAAEGNSFGSQLNNYFKSNADAAI
                     NSLTNGGEIRTVDGKQKANVQMACDESKSGEFLNIDYTGTSDINIKIKFDKNVDGKVD
                     KIWSFDNVSGICTNGVVKCDKNSWNNCEYFQYNYGDNINLVKTTIDNLNGCYCINSSC
                     GSAAAKNRDKILSDIAGPIYSALSAKTQLVLSKTTKVGSALSYRGQDYSVCDNYGQAV
                     NIDSSSNLEGLGQELAASQSNNENSVYSVFHKGTDNTVPKDENFNNKVSNSSVSIDQS
                     AKYSKGSSKIDFSYIDTTSGKNVAGDMQATPDVDAKFCEVNVAKEDTSAFNDGTNREN
                     STNNTTVYQSEIRECTNNWTKCPVNGKNETLKHDCGKINDMGEALAQLSALDEASKDM
                     VCSK"
     gene            5144..5500
                     /locus_tag="SB143_001349"
     CDS             5144..5500
                     /locus_tag="SB143_001349"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749881.1"
                     /translation="MFKIKTTPKVVSLWSRALQKAVSYFLDLKNIFLISSLKSVINTA
                     VTAMNVFRKSIVDSFLGVISSRIPNLIAKKKARPFLRIELLSHLQGSVKPLLSIYLMD
                     KNIITQNSKKGNDENI"
     gene            5487..5825
                     /locus_tag="SB143_001350"
     CDS             5487..5825
                     /locus_tag="SB143_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749882.1"
                     /translation="MKTFNCNIEINKNKTKQPKFSFNDKGLFDSQKYDITDVGNLIFA
                     SSINKIFGFTTKSFKEMIIKCNTNNLLKNESAFESIELKKEEEEKFTLDFLIESNKTS
                     VLSVFKGKII"
     gene            5822..7987
                     /gene="traN"
                     /locus_tag="SB143_001351"
     CDS             5822..7987
                     /gene="traN"
                     /locus_tag="SB143_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraN"
                     /protein_id="HEF9749883.1"
                     /translation="MKNYNLLRFFSKNTSVEQITPKTLRLAILLSASLSFSQAAIQCT
                     DYNDFKQFNGHYYTATVQKMTFEDARKLAEDSGGYLAIPDSKAENDFLSSLFRGGQYA
                     WIGVYDPSYISNYCVEGNSGCIYDDSRFKTVKGNPLTYKNWAQTQPDNLLKKYDIVDG
                     KERVSPLGEHWVAMASPSGQWSDQGNHFGDTNNPVRNYALLEFDKIPDCAGGGSDGGD
                     NGHTATDAMQCNTNFSDDPNFKPANGQGQSIACLQNSQQKYFCPAQLTQCVNSDDAVD
                     GSSKKIEGGVLKTGKTKVKLTFSKSIGYNAWQVVTNDIYITDIDAIDSFKLVYAGADD
                     WVVPFAPNSTVAVVGNKPNNTKDALDYIPYRPNNDNYGELSKFSGKNLNIELKQYLHT
                     GINKSVAFFATVGSGGWQLTYEATGKDISCSNFGRNLNCTEESETIPFSAYKYTCPAG
                     YQPKEQGGVCSPQSVDDLIDTNGDGIGDSCNSSIAPAKNCLGVTRTCPFNSSRECVLI
                     DNKYQCSPFPCFKGVSDVENTDTPVGVNDANNNGWNDDGTCSGQIIIFNGQDNRCKNW
                     DMFGGLLGGGCCDKDNVFLGLVACKEDEKKLAKLNDAGKCHEVGTYCSKKVSLGFTKI
                     CVEKKKSFCCFNSKLGRIFNEQGRPQLGKGWGSAEGPQCKGFTPEEFQKLDFSEIDLS
                     EFIADIVGSFDTGKIQADSVKIQEKIQNNIENATKKPTN"
BASE COUNT         3021 a         1105 c         1539 g         2690 t
ORIGIN      
        1 tataaacata ttttgaaaaa tattcttact tcaaataatt tttcacctgt tgtagctgag
       61 cctgaggttt taaaacctat gctttacgag ctttttaatg gtaatcatga tattaataat
      121 attccaaatt atgataggac ttgctatctt aatagacaag ttattatgcc tacaacagag
      181 attttaatta aagatgatga attaaaaata gatggtagaa gttttattag tttaacacca
      241 caatcatttc cgcaagaagc acatattggt gattttgggg aaaaattagg tgattatatt
      301 agtagggctt tggataataa tcaattcaaa gatacttttt taattactgc ttctgtttgt
      361 gctttatcta agaaaaaaac cgcacgagta aaagataatc attctatgct tttgacacaa
      421 aaatggagtg aaaatatttt tagacagttt gcagcagcca gaaaagaaag cgtttctata
      481 cttgaaagaa tagataatca aaaagaaaag ctttatgctt ttgatttgaa tgttatagtt
      541 agtggtgata attataatga agcttcttta aatgcaagca ctattatttc ttattggaat
      601 aaaggcggta gtaaagctat tgtgcttgat gaagctttag gaattcatca acttaatctt
      661 attgcttctt tacctatggg gattaataaa gaatatatgt ttgatattac tgtaaaatat
      721 cgttctatgt ttcctgatca aatttcacaa ttcattcctt tagaagcaga ttttaaactt
      781 aatattccaa atttgatttt attttcaaga agagcgcaaa ttgcaggact tgatttgttt
      841 gtttcaagtt caaattataa tgcttatttg gttgctactt caggtgctgg aaaatcagtg
      901 ctattgaata tgcttgcttt taattcttat gctagaaatg atagaatttt cattatcgat
      961 caggataact cttttattaa tatttgtgat gcggtaggag ggcaatatct tgcgcttgat
     1021 ccttcaaaac ctatcagctt taaccctttt agcggcttaa aaaataatga tagagattct
     1081 ttcgcagagg atttggaata tctatcaagg ttgatttata tgttgggaag ttctaaaaat
     1141 caagatagag ccttagaaga tgaaagactt attaaagcta aaacacaagc aattatggag
     1201 gagctttttt tatcaaaagg caatactatg gaagttacag atattagaga tgaacttgcc
     1261 aaagtagatg atcaacgctt tagagatttt gcagatcaat tacgcccttt ttgcaaagaa
     1321 ggaatttacg gtaaatattt taatggtcct tgtgagttta atatagaaaa agaatttatt
     1381 gtaactgaat ttaaagggct tgaagggtat gatgatttaa aagatccact tatcatgctt
     1441 ttaatctatc atattaatca gcttatgtat atgagtacag atagaaaatc aagaattcaa
     1501 atcatcattg atgaggcaca ccgtttctta ggaaaaaatc caaaaatgga tgacttcatt
     1561 gaacaagctt atcgccgtgc tagaaaatat ggcgcttctg caattattgc aactcaaggt
     1621 tttgatgata tctataatgc taaagatgga ggattaagtc gtgcaggaac agttattgta
     1681 aataactcag cctataagat ttttatgaaa caaactgaaa cttctgttaa tatgttaatt
     1741 aaatcagaag tgttttccct aagtgaaact gataaagaaa ttttgcgttc tattaggact
     1801 ataaaaggag aatattcaga actctttttg atgactcctg atgatgtgaa attgccctat
     1861 cgtttagtag tggataagta tttttactat cttactacta ccgatgcaac agataaagct
     1921 aaaatcaaag aattaaccga tcaaggaata cctttaggag aagccattga tttacttgcc
     1981 aatactaaga caaaaagcaa tgaagctaag taaaaatcaa attagaacgc ttatcaataa
     2041 agctttattt gttctaattg cttttattat tggaaatata gttgtttcag ctttatctca
     2101 attttatgga ataggcataa ttcataccaa aagcatcgat aaagatgttt tcatatatca
     2161 aaaaaagttt caaggagatt taaaagattc tttaatttat ttttctttac ctgtgcaaac
     2221 aagatatttt gataaaaatt ctaactttgg aaaatatgta agatgtgaag aaggacaaac
     2281 attaagtgtg aaagatttga aatattattg tgacaatgtt tttttgggta ttgctcaaaa
     2341 aacagataag gatggaaata aagtagaaca atttatattt aacggagtta taccaaaaga
     2401 taaatttttt gtaatgggaa cacatcctag aagctttgat agtaggtatt ggggttttgt
     2461 agatagaaaa gatattaaag gagtttctat atgggcattt taaaaaagag ggtgataatt
     2521 tctgctattg catgtgcatt tttgttgcca agcgctttaa atgcaaattt atcaagcttt
     2581 attcaaaaca atttaggcag ttctatcact tctgaaaatt caggttatta taaatctcag
     2641 gtttcaggtt ttattagtgg tggtagttca agaattagat ggggtggtgg tgaaactata
     2701 cgcccttatt cagtaactgc gccaagtttt aatgtggggt gtagtggtat tgatatgatc
     2761 tttggtggat tttcttatct taattttgag tatttggttg aaaaactcaa aaagattgct
     2821 tcagctgcgc ctgcctatgc ttttcaaatg gcactttcta cgctttgtaa agattgtcaa
     2881 accattatgg atgagcttga aaaaatagca aatgctatta atagtatgaa cttcgatact
     2941 tgccaaatga caacaaattg gactaataaa tttggaaaaa tgctcagttc taatacggaa
     3001 agtggacaaa acgatagttg gttaacttct tttgctaaag gcatggaagg aacagctcaa
     3061 acggtacaaa attttgctaa agaagcaaat gcttttgtaa atggaacaac tcctgataaa
     3121 agcggtgaaa caaatgcagc taaaatttta aaacaaggat caattattca aaaaataatt
     3181 gaaaaaggta aagcaagttt ttttgctgat gcttttggag aaaatcaata tgaagatatt
     3241 ttaaggggtg tttttggtga tttggtagct tatactgaaa aaagtacttc tatcactaat
     3301 aagaaaatga gtgatcctga aaaagttatg ttaataggtc ctactttaaa tacagacaaa
     3361 ttcattgaag cgctatggaa taaaaatggt gaaaataaat ctataacgct tgaatttaca
     3421 gcttatacga tcaacaaaga tgaaaatggt ttgtatcaag aacctgtagg aaaagaaaca
     3481 aaagtaacca tagataaaga tattcgctct ttattaattg aaaaatttaa agctatcgtt
     3541 acaaaaatca aggcaaaaac ttctttagat gatgcggata aaaacttaat taatgctgca
     3601 cctttgcctg ttgccgatat tttaaatatt gaagcatcaa caggacttaa tggggatgcc
     3661 gtttacgaat ttgtggcgct tttaatggta gatgcttttg ttaatgagct ttttaatgag
     3721 tttataacaa atatcaatac cgtacaaggc ttagatccta aattttcaag cgatcataaa
     3781 gatgatcttg ctaaattcaa tgcagctgtt gctaaagtgc aagaaactac aagagctcta
     3841 cttagtgaaa atgcacaagc tattattaga gataatcagc aagttgattc aattagaaaa
     3901 atcatttcga atttctatgg agttagcgat atattcaatt atggaacagg tagataggag
     3961 aaagcatgag aaaatatctt tttttaattt ttgtagtttg taacttttta caagctgcaa
     4021 ataatgctgc tgctgaaggc aatagttttg gttcacagtt aaataattat ttcaagtcaa
     4081 atgctgatgc ggctattaat tcactcacaa atggaggtga aattagaaca gtcgatggaa
     4141 agcaaaaagc taatgtacaa atggcttgcg atgaatctaa gagtggagaa tttttaaata
     4201 tagattacac aggtacaagc gatatcaata ttaaaattaa atttgataaa aatgttgatg
     4261 gcaaagtaga taagatttgg agttttgata atgttagcgg aatatgcacc aatggcgttg
     4321 ttaagtgtga taaaaactca tggaataatt gtgagtattt tcagtataac tatggcgata
     4381 atattaatct tgttaaaact acaattgata atttaaatgg atgctactgt attaatagtt
     4441 cttgtggttc tgcagcggca aaaaatagag ataaaattct ttctgatatt gcaggtccta
     4501 tctactcagc attatctgca aaaactcaac ttgttctttc taagactact aaagtaggca
     4561 gcgccttaag ttatagagga caggactatt ccgtatgtga taattatgga caagcagtta
     4621 atattgattc atcgagtaat ttagaaggtt taggacaaga attagcggct tcacaatcaa
     4681 acaatgaaaa cagtgtttat tctgttttcc acaaaggaac ggataataca gtacctaaag
     4741 atgaaaactt caataataag gtttcaaata gttcagtatc gattgatcaa agtgctaaat
     4801 attcaaaagg cagttcaaaa atagattttt cttacataga tactacgagt ggaaaaaatg
     4861 ttgcaggcga tatgcaagct actcctgatg tagatgctaa gttttgcgaa gtgaatgtag
     4921 ccaaagaaga tacttcagct ttcaacgatg gaactaatag agaaaactca acaaacaata
     4981 ctacagtata tcaaagtgag ataagagaat gcactaacaa ttggactaaa tgccctgtta
     5041 atggaaaaaa tgaaacttta aagcatgatt gtggaaaaat caatgatatg ggtgaagctt
     5101 tagcacaatt atcagcactt gatgaagcaa gtaaggatat ggtatgttca aaataaaaac
     5161 tactccaaag gtggtaagtc tttggagtag ggctttacag aaggcggtta gctacttttt
     5221 agatttaaag aatatttttc ttatctcttc tctaaaaagt gtgattaaca ctgcggtaac
     5281 cgcaatgaat gtatttagaa aatccattgt ggactccttt ttaggtgtga tttcctcccg
     5341 catacccaac ttaatagcca aaaaaaaagc tcgacccttt ttaagaatcg agcttttatc
     5401 acacctacaa ggctctgtaa aacctttgtt gtccatctac ctcatggata aaaatattat
     5461 aacacaaaat agtaaaaagg gaaatgatga aaacatttaa ttgtaatatt gaaattaata
     5521 aaaataaaac taaacaacca aaattttcat tcaatgataa aggtttattt gattctcaaa
     5581 aatatgatat tacggatgtt ggtaatttga tttttgcaag ttctataaac aaaatatttg
     5641 gattcaccac aaaaagcttc aaagagatga taataaaatg taatacaaat aatttactaa
     5701 aaaatgaatc cgcattcgaa tctatagaat tgaaaaaaga agaagaagaa aaatttacgc
     5761 tagattttct tattgaatca aataaaacaa gtgttttatc agtttttaaa ggaaaaataa
     5821 tatgaaaaat tacaatttgt taagattttt tagtaagaat acatcggttg aacaaattac
     5881 tcctaaaaca ttaagacttg ctatactcct ttcggcgagt cttagctttt ctcaagctgc
     5941 tattcaatgt acagattata atgattttaa acaatttaat ggacactatt atactgctac
     6001 tgttcaaaaa atgacttttg aagatgcaag aaaactagca gaagatagcg gtggctattt
     6061 agcaattcct gattctaaag ctgaaaatga tttcttaagt tctttgttta ggggagggca
     6121 gtatgcttgg ataggcgtgt atgatccaag ttacataagt aattattgtg ttgaaggtaa
     6181 ttcaggttgt atttatgatg atagtcgttt taaaacagtc aaaggtaatc cattaactta
     6241 taaaaattgg gcgcaaactc agcctgataa tttactaaaa aaatatgata tcgtggatgg
     6301 aaaagagaga gtatctcctt taggggagca ttgggttgct atggctagcc ctagcggaca
     6361 atggagtgat caaggcaatc attttggaga tacaaataat cctgtgagaa attacgctct
     6421 tttagagttt gacaaaatac ctgattgtgc aggtggtggt agcgatggtg gtgataatgg
     6481 gcacactgca acagatgcta tgcaatgcaa tacaaatttt agcgatgatc caaacttcaa
     6541 acctgcaaat ggacaaggac aatccatagc ttgtttacaa aactctcagc aaaaatactt
     6601 ttgtcctgca caattaacac aatgtgttaa ttcagatgat gcagtagatg gtagtagtaa
     6661 aaaaatagaa ggtggtgttt taaaaacagg taaaacaaaa gtaaaactca ctttttccaa
     6721 aagtataggt tataatgcgt ggcaagtcgt gacaaatgat atctatatta ctgatattga
     6781 tgcaattgat agttttaaac ttgtttatgc aggagctgat gattgggtgg ttccttttgc
     6841 tccaaattct acagttgccg ttgttggtaa taagccaaat aatactaaag atgcactaga
     6901 ttacattcct tatcgcccaa acaatgataa ctatggtgag ctttcaaaat ttagcggaaa
     6961 aaacttaaac atagaattaa aacaatattt gcacacaggt attaataagt ctgtagcatt
     7021 ttttgccaca gtaggaagcg gtggctggca gctcacttat gaagcaacag gaaaagatat
     7081 aagttgtagt aattttggaa gaaatttaaa ttgtacagaa gaaagcgaaa caattccttt
     7141 tagtgcttat aaatatactt gtcctgcagg ttatcagcct aaagagcaag gtggagtgtg
     7201 ttcaccacaa agtgtagatg atttgattga tacaaatgga gatggtatag gtgatagttg
     7261 taattcttct attgctcctg ctaaaaactg cttaggtgta acaagaactt gtcctttcaa
     7321 tagtagtaga gagtgtgtgc taatagacaa caaatatcaa tgttctcctt ttccttgttt
     7381 taaaggagta agcgatgtag aaaatactga tactcctgtt ggtgttaatg atgcaaacaa
     7441 taatggttgg aatgatgatg gtacttgttc aggacaaatc attattttta atggacaaga
     7501 taatcgttgt aaaaattggg atatgtttgg cggtttactt ggtggtggat gttgtgataa
     7561 agataatgtg tttttaggac ttgtagcttg taaagaagat gagaaaaagc ttgctaaatt
     7621 aaacgatgca ggaaaatgtc atgaagtagg aacttattgt tctaaaaagg ttagtttagg
     7681 ttttactaaa atttgcgttg aaaaaaagaa aagtttttgt tgcttcaatt ctaaattagg
     7741 aagaattttc aatgaacaag gacgccctca gcttggaaaa ggttggggaa gtgcagaagg
     7801 tccgcaatgc aaaggtttca ctcctgaaga atttcaaaaa ttagatttta gcgaaattga
     7861 tttaagtgaa ttcattgctg atattgtagg aagttttgac acaggaaaaa tacaagctga
     7921 ttctgtgaaa atacaagaaa agattcaaaa caatatcgag aatgcaacga aaaaacctac
     7981 aaattaaaaa agaaaataaa ttattagaaa ggagagaagc ttagttaaaa gtttgtttgg
     8041 tgtaagccaa agggattgtt ctaaaccctg caaaagcagg ggatactcaa taagccttga
     8101 catagcaaag cattaagagt ataattataa gaacaatgtt tagcaattta atcaccgcct
     8161 ttctaggtta tgattaatgc caaaggtagc cgcctttggc atctaccttt tataattata
     8221 ccaaaaacaa actctttaac ttcttaaaac agtccatgaa aagattttac ttgttattcc
     8281 ttagcacttt gttttttgca ccttcatttt tatttggtgc aaatattgaa aatataaaaa
     8341 aatatagaaa ttcaa
//
LOCUS       DARAII010000076         8323 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.076, whole genome shotgun sequence.
ACCESSION   DARAII010000076 DARAII010000000
VERSION     DARAII010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8323
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.076"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..323)
                     /locus_tag="SB143_001352"
     CDS             complement(<1..323)
                     /locus_tag="SB143_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEF9749884.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVEVKIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIECLSRKEALPLILEDK
                     RVFAVA"
     gene            complement(387..2360)
                     /locus_tag="SB143_001353"
     CDS             complement(387..2360)
                     /locus_tag="SB143_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEF9749885.1"
                     /translation="MRKILLQILIFSVLFIVAFTINRILMQNSFIPAGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSVYIIVL
                     SCLCIGFSYAKYYYYEIYKTKFDIFMFTLKDDNTKTILSIIYHDYPILKILALMLIFG
                     VFVVFLNLKILNLKLKPVNLRLFPLIALNLILIIVYVIALRGPFKHVAINVQNYSFSE
                     YSVVNDTMLNPIMAFSWALKQYKEEAALKVITPLKAQELKEKLFDYLHQSPINLKAEK
                     NHPSVFVNLMESFGLNLADFANTEHNFLGSLDKHFKQDFLFKRFLSSSNGTIPSFANL
                     FFVSPLSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSAGNGSWQNIKNYLSILGVDE
                     IIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKNPHNTLIIALTISNHPPYKF
                     PQNDLPKLENIPQTLLNMLPYDKNKQDNIIKAYTYANNEFGKFLDKVKQSPFKDSVII
                     AATGDHRVREMSMDLNSQKAFAYSVPFYLYIPKDLQDNIYYDKDRVGSHKDIFPTLYA
                     LSLNNVKYLSVGGRNMLARPNDEKLEFGINDAVWIDKKGIYSGGKGYYFESNDTLKDM
                     NKAFNLDGYTKDFDKFYRELNLYQLAERLGISK"
     gene            complement(2372..3151)
                     /locus_tag="SB143_001354"
     CDS             complement(2372..3151)
                     /locus_tag="SB143_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEF9749886.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDSGANLVVLGEYVLNSF
                     FTELLAMPKSMIKEQSEAKKESLIRLAKKYELEIIAPYISVETKGYKKLCLKVAPNHI
                     KTYEQQVLMPYNHWNEEKFFSNKINKGNLKLFTFNHDKLKCALLFGFEVHFDIFWQQI
                     MAKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLF
                     INAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            complement(3144..3317)
                     /gene="xseB"
                     /locus_tag="SB143_001355"
     CDS             complement(3144..3317)
                     /gene="xseB"
                     /locus_tag="SB143_001355"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEF9749887.1"
                     /translation="MSFEENLKNANESLEKLNDKELSLDESVKIYKEGLKSIEKARLA
                     LEKARLEVEHIDE"
     gene            complement(3314..4768)
                     /gene="guaB"
                     /locus_tag="SB143_001356"
     CDS             complement(3314..4768)
                     /gene="guaB"
                     /locus_tag="SB143_001356"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEF9749888.1"
                     /translation="MNIIKRALTFEDVLLRPCYSEVLPKQVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVGPK
                     ASVAEALEIMAEYRISGVPVIDSDRKLIGILTNRDLRFENDYSNLVENVMTKAPLITA
                     PKGCTLDDAEKIFSKNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDSFGRLRV
                     AAAIGVGQMDRVDALVEAGVDAVVLDSAHGHSKGIIDTVKSVKEKYPNLDLIAGNIAT
                     AAAAKALCEVGADAVKVGIGPGSICTTRIVSGVGVPQISAIDECAMEAKKYGVPVIAD
                     GGIKYSGDIAKALAAGASSIMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSIGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIKSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     ARAEFVEITSAGLKESHVHDVTITHEAPNYKVNQ"
     gene            complement(4769..6133)
                     /gene="gatA"
                     /locus_tag="SB143_001357"
     CDS             complement(4769..6133)
                     /gene="gatA"
                     /locus_tag="SB143_001357"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEF9749889.1"
                     /translation="MITLKEALKYSKEELENLKKELNDKAKKENKIGAYIEQFLGKDL
                     SDGGEGIPIAIKDNISVKDWELTCASKILQGYVAPYDATAIKNLRSKGFSPYGRTNMD
                     EFAMGSSSATSFYGKTLNPLNFARVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     KVDFTPTAPNLNAEKKLRIAVIENYVNEASAEVKAALLKSIEMLKANGHEIVYKNMLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSQNAENLKDMYINTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVGKDKEGLNISAQLICKAFDEQTLLDGALSLEKI
                     IKEK"
     gene            complement(6245..>8323)
                     /gene="ileS"
                     /locus_tag="SB143_001358"
     CDS             complement(6245..>8323)
                     /gene="ileS"
                     /locus_tag="SB143_001358"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEF9749890.1"
                     /translation="VSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALL
                     ESMIAKGLTKGEIQKELNAKEFEGLEAINPLNSRKSILIMGEHVLMEGGSGLVHTAPG
                     HGEDDYYACLKYDIEVIMPVDDGGCYDETLRHKGLLPSDLLDEFIGLHIFKANEKILE
                     LLGNHLLYSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLKGKTLRECAKEQILK
                     TKFYPQSGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDAELFDFVANI
                     FEKHGADAWWEFEIKDLIPQNSKYNADNLEKVYDILDVWFDSGSTWNAVLNSGIYDAG
                     EKRASMYLEGSDQHRGWFQSSLLVGTAINEFAPYESILTHGFTTDEKGQKMSKSKGNV
                     IAPEYVAKTYGVEILRLWILLSDYSTDLKISDNILKQVGEQYRKIRNTIRFLLANTND
                     LENLEVEEFSFIDKWILTRATRVFKSAKENFLAYEFAKGFNVLLNFLSADLSGIYLDI
                     SKDRLYCDAKNSKRRKSAQVAMALIARELLNLLAPNLTYSVDEALEHANSLIKGDAKD
                     VFDLSLEEKFEYDFNIDDEFLLSVREKFFENIDILKKDKVIKSTLELNLDTNSKLLNS
                     IPKDELNDWFMVSFDENLQGEVLCEFEVENESFRIMKATLCKCPRCWKVESAKEDEPC
                     MRCAEVLKHA"
BASE COUNT         2666 a         1671 c         1078 g         2908 t
ORIGIN      
        1 gcaactgcaa aaacgcgctt atcttctaag ataagaggta aggcctcctt gcgtgaaagg
       61 cattcaatgc ctaattcttt agcgtgttta aattcaggat tttcttcttt gatagcggca
      121 gaataaataa ctaaatcttt atttaaaata ttgtctttat gatgtggaat ttttacctcc
      181 acgccttctt tttcaagttc tttagtaatt ttgctttctt taagatcact cccgctaatc
      241 ttaaagcctt tttcttttaa aaatcttgct aaagcggaaa ttcctatacc gcctataccg
      301 ataaaatgga tattttgcat tatctaagcc tttgtattgt aaagcttaaa ttttaacact
      361 tttttactaa aaagaaaata taaatcctat tttgaaatgc ctaaacgctc ggctaattga
      421 tataaattta actctctata aaatttatca aagtctttag tataaccatc aaggttaaaa
      481 gctttattca tatcttttaa agtatcatta ctttcaaaat agtacccttt accaccacta
      541 taaatacctt ttttatcaat ccatacagca tcattgatcc caaattctaa tttctcatca
      601 tttggtcttg ctaacatatt tcttccgcct acgcttaaat acttgacatt atttaaactt
      661 aaagcataaa gagttggaaa aatatcttta tgagatccta cacgatcttt atcataataa
      721 atattatctt gcaaatcctt aggaatataa agataaaaag gtacactata agcaaaagct
      781 ttttgggaat ttaaatccat gctcatttcg cgtactctat gatctccagt cgctgctata
      841 atgacactat ccttaaatgg actttgtttt actttatcta gaaattttcc aaattcatta
      901 tttgcataag tataagcttt gataatatta tcttgtttgt ttttatcata aggaagcata
      961 ttaagcaaag tttgtggaat gttttctaat tttggcaaat cattttgcgg aaatttataa
     1021 ggtggatgat tagaaatagt aagagcaatt ataagggtgt tgtgtggatt tttttgaagt
     1081 aagtcataaa cttttttata taaaaactca tcagctaccc cataaccatt ttcactatct
     1141 tttgctccat tatactcttt cattaaaata ttttcatcta taatctcatc tacccccaaa
     1201 atactgagat aatttttaat attttgccaa gatccattac ctgcacttac aaaaatcacc
     1261 ttatatcctg ctttcttata aatagcaata ggtgttaaat ccaaataagt tttctgaaat
     1321 ttgcttgtag aaatattaga caatggactt acaaaaaata agtttgcaaa acttggtata
     1381 gttccattac tagaactcaa aaaacgtttg aataaaaaat cttgcttaaa atgtttatct
     1441 aacgaaccca aaaaattatg ttctgtattt gcaaaatcag ccaaattaag cccaaaactt
     1501 tccattaagt taacaaatac actaggatga ttcttttcag cttttagatt tataggactt
     1561 tgatgcaaat aatcaaaaag tttttcttta agttcttgtg ctttcaaagg tgtgataacc
     1621 ttcaaagccg cttcttcttt atattgtttt aaagcccaag aaaatgccat aattggattt
     1681 aacattgtat catttacaac actatactca ctaaaagaat aattttgtac atttatagcc
     1741 acatgcttaa aggggcccct taaggctata acataaacaa taattaatat taaatttaaa
     1801 gctatcaagg gaaataatct taaattaaca ggttttagct ttaaatttaa tattttcaaa
     1861 tttaaaaaaa ctacaaaaac tccaaaaatc aacattaaag ctaaaatttt taaaattgga
     1921 taatcatgat aaataatact taaaatagtt tttgtattat catcttttag agtaaacata
     1981 aaaatatcaa atttagtctt gtaaatttcg taataatagt attttgcata agaaaatcct
     2041 atacaaagac aagaaagaac aattatataa acgcttgaaa aaatgaaata aaaattttta
     2101 ctatatatta ctaacttatt atttattttt atattagaaa aaattaaact taaaaaacca
     2161 caaagcaaga atggtaaaaa cgctgcgctt aaaaatctta tatcatgaaa aacacctaaa
     2221 agatacatta aaaagatttc atttttatca ctaattaaac cagcagggat aaaagaattt
     2281 tgcattaaaa tacgattaat ggtaaaagct actataaata atacactaaa aataagaatt
     2341 tgaagtaaaa tttttctcat attcaccttc tttaaaaatt cttaagaatt ttatcaaaac
     2401 cccaaagttt tcttgcttca tcactttttt taggctctat gataagcatt tcttcttcag
     2461 aacctaattt actttctatc tcaccaaaag cattgataaa caaagtatca ccgtaaaaat
     2521 tccattcatc ttttgtttta cctatgcgat tgactcttaa aatgcttgta gaatttaaaa
     2581 acgctcttgt ttttaaaagt tcttcccatc tttgtttact ttcaaaggtg caagcactag
     2641 gaacgataac taaatcaatc tttttagcca taatttgttg ccaaaaaata tcaaaatgta
     2701 cttcaaagcc aaaaagcaaa gcgcatttta atttatcgtg attaaaagta aaaagtttta
     2761 agttgccctt attgatttta ttgctaaaaa atttttcctc attccagtga ttataaggca
     2821 ttaaaacttg ctgttcataa gttttgatat ggtttggagc gacctttaaa caaagctttt
     2881 tatatccctt agtttctaca ctgatataag gagcgatgat ttcaagctca tattttttag
     2941 caagcctaat caagctttct tttttagctt cgctttgctc tttaatcata gactttggca
     3001 tagccaaaag ctctgtaaaa aaactattaa gcacatattc gcccaaaaca accaaattcg
     3061 ctccactatc cttagaagct tttagataat aatcaagcct tgattcgctc aatgctaaag
     3121 tcggaaactg caaagcagca atcttactca tcgatatgct ccacttcaag ccttgctttt
     3181 tcaagagcaa gccttgcttt ttcaatgctt tttaatcctt ctttgtaaat tttcacactt
     3241 tcgtctaagc ttagttcttt atcattgagt ttctctaagg attcatttgc attttttaag
     3301 ttttcttcaa aactcattga tttaccttat aatttggcgc ttcatgagtt atcgttacat
     3361 cgtgaacatg gctttcttta agtcccgcac ttgtgatttc aacaaattca gcccttgctt
     3421 gaaaatcttc tatatcttta gcacccacat aacccataga agaacgaagc cctcctaaaa
     3481 gctgatgtac gacacttttt atacttccta cataaggcac gcgcccttct atgccttcag
     3541 gaactaattt atcttgtgca gttccttgct gaaaatatct atctgaactt cctttttgca
     3601 tagcccctat cgatcccatg ccacggtagg atttgtattg tcttccttgg taggtaaaga
     3661 gctcacccgg gctctcatct gtacctgcta aaagagaacc tatcatgatc gaactcgcac
     3721 ccgctgccaa agcctttgca atatcacctg aatacttaat ccctccatca gcgatcacag
     3781 gaacaccata ttttttagcc tccatagcac attcatcaat ggctgaaatt tgtggcacac
     3841 ctactcctga aacgatacgc gtagtacaaa tacttcctgg gccaataccc actttaacag
     3901 catcagcgcc tacttcacaa agtgcttttg cagcagctgc ggtagcgata ttgcccgcga
     3961 ttaaatctaa atttggatat ttttctttaa cgctttttac tgtatcaatg atacctttag
     4021 aatgcccatg cgctgaatca agaactacag catctactcc agcttctacc aaagcatcta
     4081 ctcgatccat ttgtcctact ccaatcgcag ccgctacgcg caatcttcca aaactatctt
     4141 tatttgcatc tggatattct ttgcgttttt taagatcttt tatggtgata agtccttcta
     4201 agcgtccttg ctcatcaact ataggaagtt tttctacttt atttttgcta aaaattttct
     4261 ctgcatcatc taaagtgcac cctttaggag ctgtgatcaa aggagcctta gtcattacat
     4321 tttcaaccaa atttgaataa tcattttcaa atctcaaatc gcgattagta agaatgccta
     4381 tgagctttct atcgctatct atcacaggaa ctcctgaaat tctatactct gccatgattt
     4441 ccaaagcctc tgctacactt gctttaggac ctacaaaaat aggatctatg atcaccccgc
     4501 tttcactttt tttcactctt ttaacttctc ttacctgcga agctatatcc atatttttat
     4561 gaattacacc aagtccgcca agtcttgcca tcatgatagc agctctgtgc tctgtcactg
     4621 tatccatagc agcagagatt aaaggcatgt ttaaagtgat gtttttagta agtttggtgt
     4681 gaatttttac ctgtttaggt aaaacctcag agtagcaagg gcgtaaaagt acatcctcaa
     4741 aagtcaaagc acgcttaatt atattcattt atttttcctt tataattttt tctaaactta
     4801 aagctccatc tagcaaagtc tgctcatcaa aagccttgca aataagctgg gctgagatat
     4861 taagcccttc tttatccttg cccacaggca cactaatgcc tccaagtcct gctaaattta
     4921 cagagatagt ataaacatct tctaaataag tttgcatagg gcttttttga gtatcaaatt
     4981 taaaagccgt tgtaggagtt acaggcataa aaataagatc acaatcttgt aatatttctt
     5041 catattttgc cttgataaaa gccctagctt tttgtgcttt tatataataa gcatcataat
     5101 aaccactgct taaaacaaag gttcctagta aaattcttct ttttacctct tcaccaaaac
     5161 cttcgctacg agtattgata tacatatctt taagattttc tgcattttgc gagcgttttc
     5221 cataacgcac cccatcataa cgacttaaat ttgcactcgc ttcagctgtt gcgatgatat
     5281 aatacgctgc gatatcaaac ttagaatcaa gcatattttt ataaacaatt tcatgtccat
     5341 ttgcttttaa catctctata ctttttaaaa gcgcggcttt tacttcagcg cttgcttcat
     5401 tgacataatt ttctatcaca gcaattctca attttttctc tgcatttaaa ttaggagcag
     5461 taggtgtaaa atctactttc gcacttgtgc tatccatctt atcataacct gcaatggcat
     5521 cataaagaat agctgcatct tctacatttt gcgttaaaac gcctatttga tcaaggcttg
     5581 aagaataaga agcaagccca tatcgactca ctcttccata gctaggctta aaccccacac
     5641 aaccacaaaa agcagctggc tgacgcactg aaccacccgt atcgctaccc aaactagcca
     5701 aagccaaacc acctgctacg gcagcagcac taccaccact tgaaccacct ggaactcgag
     5761 cgaaatttaa aggatttagg gtttttccat aaaatgaagt tgcacttgag cttcccatgg
     5821 caaattcatc catattagtc cgtccataag gactaaaacc tttagatctt aaatttttaa
     5881 tagcagtagc atcataagga gctacatatc cttgtaaaat tttacttgcg caagttaatt
     5941 cccagtcttt tacactgata ttatctttaa tcgctatagg tataccttca cccccatcgc
     6001 ttaagtcttt acctaagaat tgctctatat aagcacctat tttattttct ttcttagcct
     6061 tatcattgag ttcttttttt agattttcaa gctcttcttt agagtatttc aaagcttctt
     6121 ttaaggttat cattcttttt ccttctgttt ctttgccaaa tttttaataa aaacaaccgc
     6181 cactgcacaa aaaatagcgg tgattgctat agtagctata ataatggaat tggggatagg
     6241 attatcaagc atgttttaaa acctcagcgc aacgcatgca aggctcatcc tctttagcgc
     6301 tttctacttt ccaacatcta ggacatttgc aaagcgtagc tttcataatc ctaaagctct
     6361 cattctccac ttcaaattca cacaaaactt caccctgtaa attttcatca aaacttacca
     6421 taaaccaatc atttaattca tctttaggta tagaatttaa aagttttgaa tttgtgtcaa
     6481 gattgagttc taatgttgat ttgatcactt tgtctttttt tagtatatcg atattttcaa
     6541 agaatttctc acgcacgctc aataaaaatt catcatctat attaaaatca tattcaaatt
     6601 tttcttccaa gctcaaatca aatacatcct tagcatcgcc ttttatcaag ctattagcat
     6661 gctctaaagc ctcatctaca ctataggtta aatttggagc taataaattt aaaagttctc
     6721 tagcgattaa agccattgcc acttgtgcag attttctgcg cttgctattt ttagcatcac
     6781 aatacagcct gtctttgctt atgtcaagat aaattccact taaatcagcg cttaagaaat
     6841 ttaaaagcac attaaaacct tttgcaaatt cataggctaa gaaattttct ttagcacttt
     6901 taaatacgcg tgtagcacga gtcagtatcc atttatctat aaagctaaat tcctctactt
     6961 ctaaattttc caagtcatta gtatttgcaa gtaaaaatct tatggtattt cttatttttc
     7021 ggtattgctc gcctacttgt tttaagatat tgtctgaaat ttttaaatca gtagaataat
     7081 cactcaaaag tatccaaagt cttaaaattt ccaccccata agttttagct acatactcag
     7141 gagctataac attacctttg gattttgaca ttttttgccc tttttcatcc gtggtaaagc
     7201 catgggttaa gatactttca taaggagcaa attcattgat agctgttcct acaagcaaag
     7261 agctttgaaa ccaacctcta tgctgatcgc ttccttctag atacatactt gctcttttct
     7321 ctcctgcatc gtaaattccg ctatttaaaa ccgcattcca tgtgcttcca ctatcaaacc
     7381 aaacatctaa aatatcataa actttttcta aattgtctgc attgtatttt gaattttgtg
     7441 gtattaaatc tttaatttca aattcccacc aagcatctgc tccatgtttt tcaaatatat
     7501 ttgccacaaa atcaaaaagc tcagcatcaa aaatcacttc tttagtattt ttatctctaa
     7561 agaaagctat aggcgtcccc caatctcttt gtcttgaaat acaccaatca ggacgatttt
     7621 ccaccataga gcctattctt tttactccgc tttgtggata aaattttgtt tttaaaattt
     7681 gctctttagc acattctctt aaagttttgc cttttaattt tggctcatcc attaaaataa
     7741 accattgctt agtcgctcta taaatcacag gtttgtgagt tctccaacaa aatggatagg
     7801 agtgtatgaa tttagaagaa tatagaagat gatttcctaa aagctctaaa attttttcat
     7861 tagccttgaa gatatgaagt cctataaact catcaagcaa atcggatggc aagagtcctt
     7921 tgtggcgtaa ggtttcatca taacaacccc catcatccac aggcataatc acttctatat
     7981 cgtatttcaa acaagcataa taatcatcct cgccatgtcc tggagctgta tgtacaagcc
     8041 cacttccacc ttccattaaa acatgctcac ccataatcaa gatggatttt cttgaattta
     8101 aaggattgat agcttctaat ccttcaaact cttttgcatt aagctctttt tgaatttcac
     8161 cctttgtcaa acctttagct atcatacttt caagcaaagc actagcaaaa atcaatcctt
     8221 ctttagtgat aacatagttt tcatttggat ttaaagcgat agcttgattt gccaccaaag
     8281 tccaaggagt agtagtccaa atcactgcac ttgcttttga gac
//
LOCUS       DARAII010000077         8038 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.077, whole genome shotgun sequence.
ACCESSION   DARAII010000077 DARAII010000000
VERSION     DARAII010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8038
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.077"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..515)
                     /locus_tag="SB143_001359"
     CDS             complement(<1..515)
                     /locus_tag="SB143_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEF9749891.1"
                     /translation="MAKEILVAYGVDIDAVAGWLGSYGGEDSPDDISRGLFAGEVGIP
                     RLLKLFKKYNIPATWFAPGHSIETFPEQMKMIVDAGHEIGAHGYSHENPIAMSAKQEE
                     DVLLKSIELIEKISGKKPSGYVAPWWEFSNITNELLLKHGIKYDHSLMHNDFTPYYVR
                     VGDKWTKIDYS"
     gene            complement(518..1369)
                     /locus_tag="SB143_001360"
     CDS             complement(518..1369)
                     /locus_tag="SB143_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEF9749892.1"
                     /translation="MQKLLKVALIQFAPKSYEVQNNLDKALKLAHLALEQGARLIVLP
                     ELYDSAYCVEDQDEKFSLNLHQAHPNLDALQKLAKNYQAYIVACSIEKDTQLYDSAYI
                     ISHKGLLGVYRKIYLWGNEKERFARGDKYPIFELEFENFKLKLGLQICYEIGFSEGSR
                     FLALQGAEIICFPSAFGKARTYVWNLASRSRALENGVFVLAANRSGSEMSKINNETLT
                     FAGKSKIINPKGEILKEILEEEGFIIAELDLEEVQIQRKNLPYLKDLNLKLNQEILTN
                     IHLNTKE"
     gene            1505..2845
                     /gene="radA"
                     /locus_tag="SB143_001361"
     CDS             1505..2845
                     /gene="radA"
                     /locus_tag="SB143_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEF9749893.1"
                     /translation="MAKNKILFECQACGNQQSKWLGKCPECGSWDSFIELKSEQIKVL
                     KEIAQASTKASEAICIEDVELEHFSRCSTDDDELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKKNKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKNYEILIIDSIQTLYSNKIASAAGSITQVREITFELMRVSKTYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTSEVGIFEMTPKGLISAK
                     DLANRFFTRGKATSGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVRVNETAADLAVVAAIISSFKNRPLSKDCVFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIIPSKPLEDVGLKCFVAKELAQVLEWM"
     gene            2997..3677
                     /locus_tag="SB143_001362"
     CDS             2997..3677
                     /locus_tag="SB143_001362"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEF9749894.1"
                     /translation="MKDLFLFSSLLDSSHTFSYFFHLGLVALIAVICASMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGDEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRTQGFIKYFAHFMGPIKFLAPLMFPIEVVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATIVEEGH"
     gene            3674..3874
                     /locus_tag="SB143_001363"
     CDS             3674..3874
                     /locus_tag="SB143_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749895.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKFHSFLYFFLGLLPGLLLS
                     LVFVCLIENYELKLKINQDKSK"
     gene            complement(3884..4732)
                     /gene="metF"
                     /locus_tag="SB143_001364"
     CDS             complement(3884..4732)
                     /gene="metF"
                     /locus_tag="SB143_001364"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEF9749896.1"
                     /translation="MCSFSFEIFPPRRDENIKNLNAILDDLGQLSPNFISVTFGAGGS
                     INSKNTLETASLIQEEYKIPSIVHLPCIHSSKEKIISILQECKERQLDKILALRGDVC
                     NDLEKSKDFSYASDLISFIRKQGEFEIYAACYPEKHNESRNFIEDIHHLKNKVDAGTD
                     KLITQLFYDNEDFYTFKQNCALAGINIPIYAGIMPITNKRQVLKISQLCGAKIPPKFA
                     KILEKYENNTLALEDAGIAYAIDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKYLL
                     KEELHA"
     gene            complement(4742..7006)
                     /gene="metE"
                     /locus_tag="SB143_001365"
     CDS             complement(4742..7006)
                     /gene="metE"
                     /locus_tag="SB143_001365"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEF9749897.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKAQSSKEELLETAKNLRAR
                     HWKDIQNAGIDFIPSNDFSLYDNVLDAAVLFNITPKRYKDLNLDPLDEYFAQSRGYQG
                     KNGDTIALAMKKWFNTNYHYLVPECDDASIIALSGDKIFKEYLEAKELGIETKPVLVG
                     IFTLFKLIAFKDENTKQLAKDKLLQAYIELLKKLNSLGVAWLELDEPYLVYDLNQEDI
                     ALFEEFYKELLKHKGEVKILLQSYFGDLRDIYTKLLESDFDALGLDFVEGKESLNLIQ
                     KHGFANDKILFAGIVNGKNIYANDYAKSLKLIKELQKYTQNIVINTSCSLLHVPYSTE
                     FETKLDSSYLKLFSFAKEKLKELQDLKAIINSNEENPLFKANQELFKNIPNRLDEKVK
                     ARLQTLKKEDFVRKPEFKERIQIQKEFLELPVLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSKKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALALRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKTKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLNLLDTLKAVNF
                     QTEVGPGVYDIHSPRVPSVEEISSTIEKILNKLPKEQIWINPDCGLKTRGYEEVVAAL
                     KNLVIATQKIREKL"
     gene            complement(7029..7799)
                     /locus_tag="SB143_001366"
     CDS             complement(7029..7799)
                     /locus_tag="SB143_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEF9749898.1"
                     /translation="MTIFAKAFCIATLFTGFAWANEELKVGSSVVPHADILKFIKPTL
                     QKQGYDLKIYEFNDGVIPNIMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFQPKTGASISIPNNPTNESRALRIVASAGLIEIKDSELVTPLDIVKN
                     PKNLKFVELKDAQLTRSLDDVDYSLINSNFAILSGLNPIKDGLYTENKYSEYGNIIAV
                     KAGNEELDKIKALVKALQSDEVKNFIEEKYQGALIPTF"
     gene            complement(7813..>8038)
                     /locus_tag="SB143_001367"
     CDS             complement(7813..>8038)
                     /locus_tag="SB143_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEF9749899.1"
                     /translation="RFSIAYFLGVQLDKDIPIFPLNPELVQESKGVDTDPKNPLLRNV
                     ASNYFKRMIRSHPDVARIYHSDLIEKFSFA"
BASE COUNT         2415 a         1285 c         1315 g         3023 t
ORIGIN      
        1 ttactataat caattttagt ccatttgtct ccaacacgca cataataagg tgtgaagtca
       61 ttatgcatta aagaatggtc gtatttgatg ccgtgtttaa gcaagagctc attggtgata
      121 tttgaaaatt cccaccaagg tgccacatat ccacttggtt tttttccgct gattttttct
      181 ataagttcta tacttttaag taaaacatct tcttcttgtt tagcactcat tgcaatagga
      241 ttttcatgtg aatatccatg ggcacctatt tcatgtcctg catccactat cattttcatt
      301 tgttcaggaa aggtttctat ggaatgtcct ggagcaaacc aagttgcagg aatattatat
      361 tttttaaaga gttttaaaag cctagggata cccacttcac ccgcaaaaag acctcttgaa
      421 atatcatcag gagaatcctc acctccatag cttcctagcc atcctgctac cgcatcaata
      481 tccacgccat aagcaactag aatttctttt gccattttta ctcctttgta ttaagatgga
      541 tgtttgttaa tatttcttga tttaatttga gatttaaatc cttaagataa ggtaaatttt
      601 ttctttgaat ttgaacttct tcaagatcaa gttcagctat gataaaacct tcttcttcta
      661 agatttcttt taaaatttct cctttaggat tgataatttt tgattttcca gcaaaggtta
      721 aagtttcatt atttatctta gacatttcac ttccagatcg gttagcagct aagacaaaaa
      781 caccattttc taaagctcta gatctacttg ctagattcca aacataagtt cttgcttttc
      841 caaaagctga aggaaagcaa atgatttcag ctccttgaag cgctaaaaat ctagatcctt
      901 cgctaaagcc tatttcataa caaatttgca aacctaattt gagtttaaaa ttttcaaatt
      961 ctagttcaaa aataggatat ttatctcctc ttgcaaatct ttctttttca ttaccccaaa
     1021 gataaatttt tctataaaca cctaaaagac ctttgtgact aatgatgtaa gcactatcat
     1081 aaagttgggt atctttttct atagaacatg ctacgatata agcttgatag tttttagcta
     1141 atttttgtaa tgcatcaaga ttaggatgtg cttgatgtaa atttaagcta aatttttcat
     1201 cttgatcttc cacgcaataa gcactatcgt aaagttcagg caaaactatc agcctagcac
     1261 cttgctctaa tgcaagatgg gcaagcttta aggctttatc gagattgttt tgaacctcgt
     1321 aagattttgg agcaaattgg attagggcga cttttagtaa tttttgcata ctctagcctt
     1381 ttttatttta tttatattat aatcatataa aacttaattt tatttgactt tttgttaaat
     1441 tttaatttaa tttttgttat aatgtgaaaa attattgcaa taaatattct ttaaagaaag
     1501 tatcatggct aaaaataaaa ttctttttga atgccaagct tgcggaaatc agcaaagcaa
     1561 atggcttgga aaatgtcctg agtgtggttc ttgggatagt tttatagaat taaaatctga
     1621 acaaattaaa gttttaaaag aaatcgcaca agcaagtaca aaagcaagcg aggctatctg
     1681 tatagaagat gtggagctcg agcatttttc aaggtgtagc actgatgatg atgagctgga
     1741 tttggtttta ggtggagggc ttgttgaggg ttctttggtg cttataggtg gtagccctgg
     1801 ggttggcaaa tctacacttt tactaaagat tgcttctaat ttggctaaaa aaaataaaaa
     1861 agttctttat gtaagtggag aagaaagtaa ggcgcaaatc aaattaagag ccgatcgtct
     1921 tgaggctaat actcctaatt tatttttact tacagagctt tgtcttgaaa atattttaga
     1981 agaattgcat aagaaaaatt atgaaattct tatcatcgac tccatacaaa ccttatattc
     2041 aaacaaaatt gcttcagcgg ctggaagtat cactcaagtg cgcgagatca cttttgaact
     2101 tatgcgagta agcaaaactt acaatatcag cacttttata ataggacata tcaccaaaga
     2161 aggagccata gcaggcccta gggttttaga gcatatggtc gatgtggtgc tttattttga
     2221 aggggatgca actaaagaaa tcaggctttt aaggggtttt aaaaatcgct ttggtggcac
     2281 aagcgaggtg ggaatttttg aaatgactcc taagggttta attagtgcaa aagatttagc
     2341 caatcgtttt tttacgcgag gtaaagctac ttcaggcagt gctttaggtg ttgtaatgga
     2401 gggttctcgt gctttggttt tagaggtgca agctctagtg tgcgagagtt cttatcctaa
     2461 acgcagtgcc acaggctatg aaaaaaatcg tcttgatatg cttttggctt tacttgaaag
     2521 aaaattagaa attcctcttg gtcattatga tgtttttgta aatattagcg gtggagtaag
     2581 ggtaaatgaa actgcggctg atttggctgt ggttgcggct attatttcta gttttaaaaa
     2641 tcgccctttg agtaaggatt gtgtttttat aggggagttg agtttaaatg gagaaataag
     2701 agaagttttt agtcttgata cccgtttaaa agaagctaaa atgcaaaaat ttaaaaatgc
     2761 tattattcca tctaaacctt tagaagatgt agggcttaaa tgctttgtag ccaaagagct
     2821 tgcccaagtt ttagaatgga tgtgatattg ctataaagcc ttatattttt tgttttaaca
     2881 tcaacaaatt tagagctatt tttttattaa attaggagta aatattttgt tggttttcat
     2941 taaaatataa gcaagatgat aatataatta gagtttaaaa aaatagcgag gaaattatga
     3001 aagatttatt tttattcagt tctttacttg actcaagtca tactttttct tatttttttc
     3061 atttaggttt ggtagctttg attgctgtca tttgtgcttc aatggctact cgttctatgc
     3121 aacttgttcc acgcggtatg caaaatttag gtgaagcgtt tttagagggt gttttgtcaa
     3181 tgggacgcga cactatggga gatgaaaaag gtgcgagaaa atatcttcct cttgtagcaa
     3241 ccttgggaat tatagttttc tttagtaata tcatcggtat tataccaggc tttcatgctc
     3301 caacagcaag tttaaattta acactttctt tggctattat tgtatttgtt tattatcatt
     3361 ttgaaggaat tcgtactcaa ggttttataa aatattttgc tcattttatg ggtcctatta
     3421 aattccttgc tcctttgatg tttcctatcg aagtagtatc tcacctttct cgcgttgttt
     3481 ctttatcttt tcgtcttttt ggaaatatca agggtgatga tttattctta atggtaattt
     3541 tggctcttgt gccttatatt gcaccgcttc ctgcatatgt tcttttaact tttatggcat
     3601 ttttacaagc attcattttt atgattttga cttatgttta tctagcaggt gcaacgatag
     3661 ttgaggaagg tcattgattt atatcttaga attcttcaaa ggtgcgtcct tagctttaat
     3721 gctttttggc gcactttttt tcttttttaa atttcattct tttttatatt ttttcttagg
     3781 acttcttccg ggtttgcttt tatctttagt ttttgtttgt cttatagaaa attatgaatt
     3841 aaaacttaaa atcaatcaag ataaaagcaa gtaagtttta tttttaagcg tgaagttctt
     3901 cttttaataa atattttacg gcttcataaa tttttatagc tgctttggat ttattcatgg
     3961 tataaagatg aattccatcc accccgctag taatcaaatc tacaatttga tctatggcat
     4021 aagcaattcc agcatcttct aaggctaaag tattgttttc gtatttttct aaaattttgg
     4081 caaatttagg tggaatttta gctccgcaaa gctgtgaaat ttttaatact tgtcttttgt
     4141 ttgtaatagg cataatgcct gcataaatag gaatattaat acccgctaaa gcacaatttt
     4201 gcttaaaagt gtaaaaatct tcattatcgt agaaaagttg agtgatgagt ttgtctgtgc
     4261 ctgcatcaac tttattttta agatggtgta tatcttctat aaaatttcga gattcgttgt
     4321 gtttttcagg ataacaagcc gcataaattt caaattctcc ttgctttcgg ataaaagaga
     4381 tcaaatcact tgcataagaa aaatctttac ttttttccaa atcattacat acatcccctc
     4441 ttaaagcaag aattttatca agttgtcttt ctttgcattc ttgaagtatg cttataattt
     4501 tttccttact agaatgaatg caaggtaggt gcactatgct aggaatttta tattcttctt
     4561 gaattaagct tgctgtttct agggtatttt ttgaatttat agagccgcca gcaccaaaag
     4621 ttacactgat gaagttagga cttaattgtc ctaaatcatc taaaattgca ttaagattct
     4681 taatgttttc atctcttctt ggtggaaaaa tttcaaaaga aaagctacac ataaaacccc
     4741 cttataattt ctctcttatt ttttgtgtgg caataactaa atttttaaga gcagctacaa
     4801 cttcttcata accccttgtt ttaagtccgc agtctgggtt gatccaaatt tgctctttag
     4861 gcaatttgtt aagaattttt tctatggttg agcttatttc ttccacgcta ggcaccctag
     4921 ggctatgtat atcataaact cctggtccaa cttcagtttg aaagttaaca gcttttaggg
     4981 tatctaaaag attgagattt gatcttgaag cttcaaaaga tattacatct gcatccattg
     5041 catcaatttc ttttaagata tcgctaaatt cgctataaca catatgggta tgaatttgtg
     5101 ttttggtttt tactccgcta tgtacaagat tgaaagcagg aatcgcccaa tctaaatatt
     5161 cactatgcca atcgcttttt cttaaaggca gtttttctct tagagccgct tcatcaattt
     5221 gtatgatttt aatgcccgca ttttcaagat ctaaaacttc atctcttaaa gctaaagcta
     5281 tttgctcggt gctttctttt aggctgatgt cttctcttgg gaaagaccaa ttgagtatag
     5341 tcacaggacc tgttagcata ccttttacga tttttttact caagctttga gcaaatttag
     5401 accatgctag agtgataggt tttgtgcgtg atacatcgcc ccaaattaca ggtggtttta
     5461 cgcatcttgt tccatagctt tgaacccagc cattttgagt aaataaaaag ccttttaaat
     5521 tttctccaaa atattccacc atatcatttc tttcaaattc cccatgcact aaaacatcaa
     5581 gtcctatttc ttcttgaatt tggatacatt ctttaatttt ttgttgattg aattcagtat
     5641 agttttgtgc tgaaattttt tcttgtttaa aagcaagacg attagagcgt acatcagcac
     5701 tttgaggaaa tgatcctatg gttgtggttg gtaaaacagg aagttctaaa aattcttttt
     5761 gaatttggat acgctcttta aattcaggct ttcttacaaa atcttctttt tttagagttt
     5821 gaagtctagc ttttactttt tcatctaaac gattaggaat atttttaaag agttcttgat
     5881 tggctttaaa aagaggattt tcttcattgc tatttatgat agcttttaag tcttgtaatt
     5941 ctttaagttt ttcttttgca aaagagaaaa gtttaagata acttgaatct aatttagttt
     6001 caaattctgt gctataagga acgtgcaaga gtgaacacga ggtatttata actatatttt
     6061 gagtgtattt ttgaagttct ttgataagtt ttaagctttt tgcgtaatca ttagcataga
     6121 tatttttacc atttactata cctgcaaaaa gtattttgtc gttagcaaaa ccatgttttt
     6181 ggattaaatt taaactttct ttgccttcta caaaatcaag ccccaaagca tcaaaatcac
     6241 tttctagaag tttagtataa atatctctta aatctccaaa atagctttga agcaagattt
     6301 taacttctcc cttgtgtttt aaaagttctt tgtaaaattc ttcaaataaa gcaatatctt
     6361 cttgatttaa atcataaact aaataaggtt catcaagttc taaccatgct acccctaatg
     6421 aattaagctt tttaagaagt tcaatgtatg cttgtaaaag cttgtcttta gcgagttgtt
     6481 tagtattttc atctttaaag gctatgagtt taaagagggt aaaaattccc actaaaacag
     6541 gttttgtttc tatgccaagc tcttttgctt caaggtattc tttaaaaatt ttatctccac
     6601 ttaaagctat aatacttgca tcatcacact caggtactaa ataatgatag tttgtattaa
     6661 accatttttt cattgctaga gctatggtat ctccattttt tccttgataa ccacgacttt
     6721 gtgcaaaata ctcatctaaa ggatctaaat ttaaatcttt atagcgtttt ggagtgatat
     6781 taaaaagcac agccgcatct agtacattat catacaacga aaaatcattg ctaggaatga
     6841 aatcaatccc cgcattttgg atatctttcc aatgtctagc tcttaaattt ttagcagttt
     6901 ctaaaagctc ttctttagaa ctttgagctt taaaatattt ttcaatagca aattttaatt
     6961 ccctatttgc acctattctt gggtaagaaa tgattgaatt tttcatattg ttctcctttg
     7021 ttgttaaatt aaaaagtagg gattaaagca ccctgatatt tttcttctat aaaattttta
     7081 acttcatcac tttgtaaagc tttgactaag gctttgattt tatcaagctc ttcatttcct
     7141 gctttaacgg cgatgatatt gccatattcg ctatatttat tttctgtata aagtccatct
     7201 tttataggat ttaagcccga taaaattgca aaattactat tgataagaga gtaatctaca
     7261 tcatctaaac ttcttgtaag ttgggcatct tttaattcta caaatttaag atttttagga
     7321 ttttttacga tatccaaagg cgtaacaagt tcgctatctt taatctcgat taatcccgca
     7381 cttgctacta tgcgtaaagc acgactttca tttgtaggat tgttaggtat tgatatactt
     7441 gcccctgttt taggttgaaa ttctttatgt tttttagaat ataccgccat aggttcgata
     7501 tgaatactag caacttttac aagatgagtg ccttgtcttt gattaaattc tttcaaataa
     7561 ggttcatgct gaaaataatt tgcatcaagt tcgccatttt ccaccataat attaggaatc
     7621 accccatcat taaattcgta aatttttaaa tcataacctt gcttttgaag agtaggtttg
     7681 ataaacttta aaatgtctgc atgtgggaca actgaagaac ctactttaag ttcttcatta
     7741 gcccaggcaa agcctgtaaa aagagttgct atgcaaaaag cttttgcaaa tatagtcatt
     7801 attccctcct ttttatgcga aactgaattt ttctattaaa tcgctgtgat aaatgcgtgc
     7861 tacatcagga tgtgagcgta tcattctttt aaaatagttg ctagcaacat ttcttaaaag
     7921 tggatttttt ggatctgtat ccacgccctt gctttcttgg acaagttcag gatttaatgg
     7981 aaaaatagga atatctttat caagctgcac tccaaggaaa taagctatac taaagcgt
//
LOCUS       DARAII010000078         7756 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.078, whole genome shotgun sequence.
ACCESSION   DARAII010000078 DARAII010000000
VERSION     DARAII010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7756
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.078"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..663
                     /gene="accD"
                     /locus_tag="SB143_001368"
     CDS             <1..663
                     /gene="accD"
                     /locus_tag="SB143_001368"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HEF9749900.1"
                     /translation="IKLLSDENTFVEYDANLEAIDPLKFVDSKSYKKRLSEGESKTGR
                     KSAVISGECLIDGLKIQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITDKTPVVIVSAS
                     GGARMQESTYSLMQMSKTSAALKLLSKEKLPYISVLTDPTMGGVSASFAWLGDLIIAE
                     PGALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERSDMKKYLSDTLKFFC
                     GK"
     gene            665..1114
                     /locus_tag="SB143_001369"
     CDS             665..1114
                     /locus_tag="SB143_001369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEF9749901.1"
                     /translation="MQVNIFHIQKNDEFKIWGEKYAKLISKFADLKEHNLFNKKIAAA
                     QNLNAQAAKLSYEEAFAPYTKGFCIVLDERGKELTSVEFAKLIADKNNLNFFIGGAYG
                     LRDEFSQSLDFRLSLSKLTLAHQFVKILLLEQIYRAFCINSNHPYHK"
     gene            1126..1479
                     /gene="dksA"
                     /locus_tag="SB143_001370"
     CDS             1126..1479
                     /gene="dksA"
                     /locus_tag="SB143_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase-binding protein DksA"
                     /protein_id="HEF9749902.1"
                     /translation="MKKNEIQVFKTILENRKKTILENLQSNSKEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISANLKQELEEIEDSLEKIKDGTYGICESCDEEIAIERLKIKPHA
                     KYCIVCRENLEKGEL"
     gene            1476..2462
                     /locus_tag="SB143_001371"
     CDS             1476..2462
                     /locus_tag="SB143_001371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749903.1"
                     /translation="MKIRLFFIASFIYIALIFALAWYLELGNYTLNFNTYSFELPIMI
                     WLILPLIPLVFFAIIHMGFYYFLLTLKFKHFFKDSTKFENFTRDLLLEKESNISFQTK
                     EFRQVAQLAKTLKTHEKIPNANKINEILDLIDGIKKEEYFNLNKFKLENNNILFLENE
                     KNHIKNDINYAYSKIKNLSQTQDEFQDLAFESLIKKGTYEQIKNIKITKKPCHILTLI
                     KRFKEGNLELNAAEYEVLLSHNILSEKDYLDIAKLSIKLLNPDAVIGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLILREKNIKIDLNQLIQ"
     gene            2459..3385
                     /locus_tag="SB143_001372"
     CDS             2459..3385
                     /locus_tag="SB143_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEF9749904.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKSLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFVSIHGRTRKQLYSGKADYESIANAKASVKIPVIANGDINAQNAKEVYEITKCDGLM
                     IGRASVGNPWIFYEIKSGKNVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYFK
                     GHKDASAFRDSVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(3406..4644)
                     /locus_tag="SB143_001373"
     CDS             complement(3406..4644)
                     /locus_tag="SB143_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749905.1"
                     /translation="MIGINSTFNNSFVNLNIKNNNNSSLNSNTSNANVKNLQDTQDTT
                     KTSNKVLGYEVDKDGFFTSEFNKAAGIPKDYKIYAKGAENFVNYITNLNFKSFTNIDI
                     AKSLGNAYKVFSQLIDEPSGNFTTEDLSKIPLGFSYNKKSFQVTNIYYSEKDFESALS
                     FEDDLKIYQNPKQLTLSFPSWKEKAPADYIKKNSDIFDPSSHINIEASFYKNDNGTIS
                     KGGVLMAFFAGMSGQNPLIEGETTIEGKLLGYDKNMSQSQVEDLNEFINQNPIEWSIT
                     GDVFADSVYITKLRNTITDIDEFKKQWLEMKAKSDEMGEIYKAEIAKQNREIALAQKN
                     SNKEKDKPFEPMQAESKSETYKDDNKMNELLKKLLETKFGTSDELEILFGMKFGDDNA
                     GEFNKILSLNSTPKSIDIKA"
     gene            complement(4680..5372)
                     /locus_tag="SB143_001374"
     CDS             complement(4680..5372)
                     /locus_tag="SB143_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749906.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELAKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDKNAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKILQENLEENKEKP
                     FKPIQAESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMKFSDDDAGEFNKILS
                     LNSAPKSVDIKA"
     gene            complement(5495..5902)
                     /gene="ybeY"
                     /locus_tag="SB143_001375"
     CDS             complement(5495..5902)
                     /gene="ybeY"
                     /locus_tag="SB143_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEF9749907.1"
                     /translation="MILSDEKCEFLEPIVSFLSSKDVELVFVESKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINIDLAKQKAKELGHSFEEEVSLLFIHAMLHLLGF
                     DHEVDNGEMREKEKELIEHFNLPKSLIIRTLED"
     gene            complement(5899..6513)
                     /gene="recO"
                     /locus_tag="SB143_001376"
     CDS             complement(5899..6513)
                     /gene="recO"
                     /locus_tag="SB143_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEF9749908.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKELIKAYRFYGLRHSSILNGY
                     KIDFALDENPSFLPRLKDVLHLGFVWIMDREKMLIWQEFIRLLYHHLKDAQVLESFYF
                     ELLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHQEFRCFACDESIENPITLIRAFLP
                     SHHTCALGYAFEKQKLKNFYESKNCAIFGDEEIGNLYQLIKEGL"
     gene            complement(6513..7034)
                     /locus_tag="SB143_001377"
     CDS             complement(6513..7034)
                     /locus_tag="SB143_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEF9749909.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEDYLKSKEGLNLPIEHCIKDSLGWQMPKDFTPFLQKAHKVFHKNTFGSL
                     EFANFIAKSEYEEIHFAGLVSHICVFCNIILAFSAKPNSRLILHQNLSASFDENLEKS
                     AFDLLRAYGIEIL"
     gene            complement(7031..>7756)
                     /locus_tag="SB143_001378"
     CDS             complement(7031..>7756)
                     /locus_tag="SB143_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine biosynthesis protein TtcA"
                     /protein_id="HEF9749910.1"
                     /translation="AQANAKFGLIKDGDRVLLGLSGGKDSLALAHLLKRMQAHAPFKF
                     ELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRENSSFCSYFSRMR
                     RGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIYQSKRGVTVIRPL
                     IFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQLLANLEKDHPKL
                     FTSLKTAFANLHTESFWLERTKI"
BASE COUNT         2672 a         1273 c         1142 g         2669 t
ORIGIN      
        1 ataaaactcc taagtgatga aaataccttt gttgagtatg atgcaaattt agaagccata
       61 gatccgctca aatttgttga cagcaagtct tataaaaaac gcttgagcga aggcgaaagc
      121 aaaaccggta gaaagtctgc agtcattagc ggagaatgtc ttatagatgg acttaaaatt
      181 cagcttgtgg tgtttgattt ttctttcatg ggaggatctt taggctctgt agaaggcgaa
      241 aaaatcgtta gggcaatcca aagagctatc acagataaaa ctcctgttgt tatcgtaagt
      301 gcaagcggtg gagctagaat gcaagaaagt acttattctt tgatgcaaat gagtaaaaca
      361 agcgctgctt taaaactttt aagcaaagaa aaactccctt atatcagcgt attaaccgat
      421 cctactatgg gaggcgtgag cgcttctttc gcttggcttg gagatttaat catcgctgaa
      481 ccaggcgctt tggtgggttt tgcaggagca agagtgatta aacaaaccat aggtgcagat
      541 ttacccgaag gcttccaaaa agctgaattt ctactcgaac atggactcat agatgcaata
      601 gtagagcgtt cagatatgaa aaaatacctt agcgatactc ttaaattctt ttgtggaaaa
      661 taacttgcaa gttaatattt ttcacataca aaaaaacgat gaatttaaaa tttggggtga
      721 gaagtacgca aaacttatct ccaaatttgc agatcttaaa gaacacaatc tctttaataa
      781 aaaaatagct gcggcgcaaa atttaaatgc acaagctgct aaattaagct atgaagaggc
      841 atttgctcct tatacaaaag gcttttgcat agttcttgat gaaagaggca aggagcttac
      901 aagcgtagaa tttgcaaaac tcatagcaga taaaaataat ttaaattttt ttataggtgg
      961 tgcttatggc ctaagggatg aattcagcca gagtttagat tttagacttt cattaagcaa
     1021 actcacctta gcacatcaat ttgtaaaaat tttactttta gaacaaattt atcgtgcttt
     1081 ttgtatcaac tcaaatcatc cttatcacaa ataaaaggtt aaacaatgaa aaagaatgaa
     1141 atacaagttt ttaaaactat cttagaaaat agaaaaaaaa ctatattgga aaatttgcaa
     1201 agcaattcta aagaaattga agccttacat aatagcgtcc caagtgatag tgtggatttt
     1261 tctgttattg aaacaggatc acaaattgat tttgctatca gtgctaattt aaaacaagaa
     1321 ttagaagaaa tagaagattc tttagaaaaa atcaaagatg gcacttatgg aatatgcgaa
     1381 tcttgcgatg aagaaatcgc catagaaaga cttaaaatca aacctcatgc aaaatactgc
     1441 atcgtatgcc gcgaaaattt agaaaaagga gagttatgaa aattagatta ttttttatag
     1501 caagctttat ttatatagct cttatatttg ctcttgcttg gtatttagaa ttaggaaatt
     1561 atactttaaa tttcaataca tatagcttcg agctacctat aatgatatgg cttattttac
     1621 ctttgatacc tttagtgttt tttgccatca ttcatatggg tttttattat tttttactca
     1681 ctttaaaatt taagcatttt ttcaaagatt ctaccaaatt tgaaaatttt acccgcgacc
     1741 ttcttttgga aaaagaatca aatatcagct ttcaaacaaa ggaatttaga caagtagcac
     1801 agctagctaa aaccctaaaa acacatgaaa aaatccctaa tgcaaataaa atcaatgaaa
     1861 ttttagatct tatagacggt attaaaaaag aagaatactt caatcttaac aaatttaaac
     1921 tcgaaaataa taatatctta tttctagaaa atgaaaaaaa tcatatcaaa aatgatataa
     1981 attatgctta ttccaaaatc aaaaacctta gtcaaactca agacgaattc caagatctgg
     2041 cttttgaaag tttgataaaa aaaggaactt atgagcaaat taaaaatatc aaaatcacaa
     2101 aaaaaccttg tcatatcctt acactcatca agcgttttaa agaaggaaat ttagagctta
     2161 atgctgctga atatgaagtt ttactttctc acaatatcct tagtgaaaaa gactatcttg
     2221 atatagcaaa actaagcatc aagcttttaa atcctgacgc agttatagga atttttaaca
     2281 aaatcaaaaa tgaaaaaagt gaagctttaa gagcgtattt atatctttta gctgaatttg
     2341 gacttttaga tgaactcaga gaacaaattc ataatgatga caaaaaattc aatgatttta
     2401 aagccttttt aatcctgcgt gaaaaaaata tcaaaatcga tttaaatcag cttatacaat
     2461 gatagatttt agcaaaaagc ctttattttt agctcctatg gcgggttttt cagacctgcc
     2521 ttttcgcaat gtggtaaaaa aatttggtgc agatatcaca ataagtgaaa tgataagttc
     2581 caatgcttta gtttatgaaa gctctaaaac cttacatatg ctagaaagag ctgaacttga
     2641 aaacccttat atagtccaaa ttgcaggggg tgataaagaa gtgcttaaaa aagcagttca
     2701 aatgcttaat gaaatggatt ttgtagatgg cattgacttt aattgtggtt gtcctgtaaa
     2761 taaagtcgtc aaacaatgtg caggaagtgc tctgctagaa aatttagagc tttttaaaag
     2821 ccttgtggga gtgattaaag aaaacaataa aaaaagcctt acaagtgtta aatttcgctt
     2881 aggctttaat gaaaaatatc ccgaaaaaat ggctaaaatt tgcgaaagct tgggggtgga
     2941 ttttgtaagt attcatggac gcacaagaaa acagctttat agtggaaaag cggattatga
     3001 atccattgcc aatgctaaag caagcgtgaa aattcctgtg atcgcaaatg gtgatatcaa
     3061 tgctcaaaat gctaaagagg tttatgagat cacaaaatgt gatggactta tgatagggcg
     3121 tgcaagtgtg ggaaatcctt ggatatttta tgaaatcaaa agtggtaaaa atgtagatga
     3181 aaaactcaaa aaagaaatca tactcactca ttttgacgaa atgataaaac actataaaga
     3241 tcaaggtgtg agtatatttc gtaaacattt acacgagtat ttcaaaggcc ataaagatgc
     3301 ttcagccttt agagatagtg ttaatcgcat cgacaatgtc gaagaaatgc gaaaaaaaat
     3361 agaagaattt tttagtttaa cttgattttt ataatttaaa aaatcttaag ccttaatatc
     3421 tatacttttt ggtgtagaat ttaaagaaag aattttatta aattcccctg cattatcatc
     3481 accaaatttc ataccaaaaa gaatttctag ctcatcactt gtgccaaatt tagtttctag
     3541 taactttttt aaaagctcat tcattttatt atcatctttg taggtttcgc ttttactttc
     3601 tgcttgcata ggttcaaagg gtttatcttt ttctttgttt gaattttttt gtgctagagc
     3661 aatttctcta ttttgttttg ctatttcagc tttatatatt tcccccattt catcactttt
     3721 ggctttcatt tctagccatt gttttttaaa ttcatctata tcagttattg tatttctaag
     3781 tttggttata tatacactat ctgcaaatac atctcctgtt atactccatt cgataggatt
     3841 ttgatttata aattcgttta aatcttccac ttgactttgg ctcatatttt tatcatagcc
     3901 aagaagcttt ccctctatag ttgtttcacc ttctataaga ggattttgtc ctgacatacc
     3961 tgcaaagaat gccattaaaa caccgccttt gcttatagtg ccattatcat ttttataaaa
     4021 tgatgcttca atatttatat gagagcttgg atcaaatata tcgctatttt ttttaatata
     4081 atcagcagga gctttttctt tccagcttgg gaaacttagg gttaattgct taggattttg
     4141 atagattttt aagtcatctt caaaacttaa agcactctca aaatcttttt cggaataata
     4201 aatatttgtt acttgaaaac tttttttatt ataagaaaat cccaaaggga ttttgcttaa
     4261 atcttcagta gtaaaatttc cactcggttc atcaataagc tgtgaaaaaa ccttataagc
     4321 attacctaaa cttttggcaa tatctatatt ggtaaaagat ttaaaattaa ggttagtaat
     4381 ataattaaca aaattttcag cacctttagc ataaatctta taatcttttg gaattcctgc
     4441 tgctttatta aattcacttg taaaaaagcc atctttatct acttcataac ctaagacttt
     4501 attgcttgtt ttagtagtgt cttgggtgtc ttgtaaattt tttacattag catttgaagt
     4561 atttgaattt aaggaagagt tgttattgtt tttaatatta agattgacaa aggagttatt
     4621 gaaagttgag ttgataccta tcatttttaa tcctttttat aatttaaatt tttatatttt
     4681 taagccttaa tatctacgct ttttggtgca gaatttaaag aaagaatttt attaaattct
     4741 cctgcatcat catcgctaaa tttcatacca aaaagaattt ctaattcatc acttgtgcca
     4801 aatttagttt ctagtagttt tcttaaaagc tcattcattt tattatcatc tttgtaggtt
     4861 tcgcttttac tttctgcttg tataggctta aaaggctttt ctttgttttc ttctaaattt
     4921 tcttgcagta ttttctgcga tgaatcaata ttgttaaaat caacaaaata ttttttttga
     4981 agctcaagat atttttcttt aaattcatct atacttttgc ttgtgtgaaa aattttaaca
     5041 taagcttcat cataactcac cccatcaata tgcatccaac gggggtgttt ggcattctta
     5101 tccatccatt gaaataaatt tttaacttct gactctggta attcattgtt tctaagttta
     5161 tcttctattg aaccctcgac taattctatt ttatcgctga attttttaga aatcttatac
     5221 aaatctatca aatcattacc taattcttct ctttgttttt ttgcaagctc aggatttcca
     5281 ttttcaatac tttcatctct tattttggta agtgtttgca aaggattgtt tccaaaatat
     5341 ctattaaaag agcttagagg aaatactatc atctttatca ccttggaata gattttattc
     5401 taaagtaaat cggcaaaaaa tgattttttt aatattttta ctcatatatt taaaatataa
     5461 agcgcaagtc ttctagccct tgaaaaaatc ttacttaatc ttccaaagtc cttataatca
     5521 aacttttggg caaattaaag tgttctataa gttctttttc tttttctctc atttctccat
     5581 tatctacctc atgatcaaat ccaagcaaat gaagcatggc atggataaaa agcaagctta
     5641 cttcctcttc aaaactatgt cctaactctt tagccttctg ctttgccaaa tctatattaa
     5701 tcacaacaga acccaaaggc aagctctcat cgatattttc aagtggaaaa gaaagcacat
     5761 cggtggtttt atcttgcttt ctttgctcta agttaatctc ttgcatttcc ttactttcta
     5821 caaaaacaag ttccacatcc ttagagctta aaaaacttac tataggctct aaaaattcgc
     5881 atttttcatc acttaatatc ataaaccctc cttgatcaat tgatacaaat tccctatttc
     5941 ttcatcacca aaaatcgcac aatttttact ttcataaaaa ttttttaatt tctgcttttc
     6001 aaatgcataa cctaaagcac aagtgtgatg cgaaggtaaa aaagcacgaa ttaaagtgat
     6061 gggattttct atgctttcat cacaagcaaa acatctaaat tcttgatgga gtcttccctc
     6121 aaattctaaa atcttaagat aagcgtccac aatcacgcgc ttgggatttt gcttttcaaa
     6181 acgctttaca cattcatcta aaagctcaaa ataaaaactt tcaagtactt gagcatcttt
     6241 taaatgatga tacagaagac ggataaattc ctgccaaatc agcatttttt cacgatccat
     6301 aatccataca aaacccaaat gcaaaacatc cttaagtctt ggcaaaaagc taggattttc
     6361 atctaaagca aaatcaattt tataaccatt taaaatacta gaatgtctaa gcccataaaa
     6421 acgatacgcc ttgataagct ctttagggct taaaatataa acaatcaaat cctcatcttt
     6481 tactttttgc gtatgaagta taaagccttg cattaaagta tttcaatgcc ataagctcta
     6541 agtagatcaa aagcggattt ttctaaattt tcatcaaaac ttgcacttaa attttgatgg
     6601 agtataagtc ttgaatttgg cttcgcgcta aaagctaaaa tgatattaca aaagacgcaa
     6661 atatgggaaa caagtcctgc aaaatggatt tcttcgtatt cactttttgc gataaaattt
     6721 gcaaattcta aacttccaaa agtattttta tgaaaaacct tatgagcttt ttgcaaaaag
     6781 ggagtaaaat ctttaggcat ttgccaaccc aagctatctt ttatacaatg ttcgataggc
     6841 aaatttaacc cttccttgct ctttaaataa tcctcatcat gagtatcata agtaagaagc
     6901 aaatgcgtgt tattaaaatc gatttgattt aaggctttaa gaatattttc tttgatcttt
     6961 aaagccttat caaaacctaa acttccatca ataaaatcat tttgataatc cactaaaaca
     7021 aaagcttttt tcatattttt gtcctttcta gccaaaaact ttctgtgtgt aaatttgcaa
     7081 aagcagtttt taagcttgta aaaagcttag gatgatcttt ttctaaattt gctaaaagct
     7141 gtttagcttc ttctctagcg tgtggaaatt ttacattttt ttcactgagt ttcataccag
     7201 gacaaaattc atttcctatc acgctaagtt cattttgcgt agcattatcc ctaagctgtc
     7261 tttctcgcac aaaaatcaaa gggcgtatca cagttacacc gcgtttgctt tgataaatag
     7321 gcgctaaggt tcttaaagct ccattatgaa taaaattcat aaaaaagctt tctgctgcat
     7381 catctaaatg atgagctata gcaagcttgt taaaaccttt ttcaagagcg taagtatata
     7441 aagctccacg acgcattctc gaaaaatagc tacaaaagct tgaattttct cttatggtat
     7501 cgcctgaaac ttcataaata tttgaatcaa gcacgctatg tttaatgccg tgttcttcac
     7561 aatgtgcatg aagatgagaa taatcctcgc ccatgccata actcaaagtt accgcttcaa
     7621 gttcaaattt aaaaggagcg tgagcttgca ttctttttaa aagatgggct aaagccaaag
     7681 aatcttttcc cccgctaagt cctaaaagaa ccctatctcc atctttaatg agtccaaatt
     7741 tagcattagc ttgtgc
//
LOCUS       DARAII010000079         7751 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.079, whole genome shotgun sequence.
ACCESSION   DARAII010000079 DARAII010000000
VERSION     DARAII010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7751
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.079"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..327
                     /locus_tag="SB143_001379"
     CDS             <1..327
                     /locus_tag="SB143_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HEF9749911.1"
                     /translation="LHGQSMRVPVIDVSSVDLTAQLSKKVSKEELNEAFRKAAATNLK
                     GILMVDDDERVSSDFITCSYGAVVVSDLTQVIADDFVKVVAWYDNEWGYSSRLVDMAV
                     YIANKA"
     gene            330..1532
                     /locus_tag="SB143_001380"
     CDS             330..1532
                     /locus_tag="SB143_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEF9749912.1"
                     /translation="MSDIISIKDIDLSKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKS
                     KAANLKASEILMLENLRFEKGETKNDENLAKELASMAEVYINDAFGVCHRAHASVEAI
                     TKFFDENHKGAGFLLQKEIEFAENLIKRPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKAQGFDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQESPMKFVPSQEIPSGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHAISDGHATTVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     VLRSGGVQ"
     gene            1529..2200
                     /locus_tag="SB143_001381"
     CDS             1529..2200
                     /locus_tag="SB143_001381"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEF9749913.1"
                     /translation="MIFAANLKCNHTRSSFKIYANILNQYLEAKNDDIIVFPPSIAFL
                     ENELNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDENLIKAKF
                     DFAKEHAYKIVFCIGEDLKLKNSNQTLDFLKKQLEVIDLDYKNLIIAYEPIYSIGSGV
                     SAKKEDIAKVLEFLSSLTQAPLLYGGSVNEDNIKDILNIKHCSGVLIGSAALKAENFI
                     KLIKG"
     gene            2204..3031
                     /gene="fabI"
                     /locus_tag="SB143_001382"
     CDS             2204..3031
                     /gene="fabI"
                     /locus_tag="SB143_001382"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEF9749914.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACYEQGASLAFTFLNDALK
                     KRVEPIAEEFGSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFIVHAVAYAPKEALENS
                     FLETSKEAFDIAMGTSVYSLLSLTRAVLPVLKEKGAILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGIKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINAPLKRNV
                     SIEDVGNSAMYLLSDLARGVTGEVHYVDAGYNIMGMGDVTKDENGNTVLCWDNQKGQ"
     gene            3031..4530
                     /locus_tag="SB143_001383"
     CDS             3031..4530
                     /locus_tag="SB143_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEF9749915.1"
                     /translation="MAKLSNEELKDILIKRIEKIENSDLVDKKTINEESVKALAKHLS
                     LGNEIPALAQKFFELAPKTKVVWLHLCECTGCSESLLRADLPSFDELVFDFFSLEYHE
                     TLMAANGTKAEELLEHVLKEDFVLAVEGGVAAIDTFFLTIGAEGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLTQKVVNIPGCPPSDVNIIATLTYLAL
                     FGILPELDEQNRPVWAYGKCLHDLCERKAKFESGIFAEHFDDEKAKSGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANPFSYAKLVNQE
                     FSTEFALEEQIQILSSMDFEFESNLKLILQNIAKNKLGALLVENYKTSFEKNFIFIEQ
                     NFDENPMPSSDIWKYFEINFILAKGEFLQDKNDFLKAAQNYSFKHASPYDFKLTLNEK
                     SKLDVSKSFRMPLIYLCGGLDFEALAYSVLKAFEKNIKSVIDFNKQKAG"
     gene            complement(4527..6370)
                     /gene="feoB"
                     /locus_tag="SB143_001384"
                     /pseudo
     CDS             complement(4527..6370)
                     /gene="feoB"
                     /locus_tag="SB143_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
     gene            complement(6367..6591)
                     /locus_tag="SB143_001385"
     CDS             complement(6367..6591)
                     /locus_tag="SB143_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEF9749916.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            complement(6673..>7751)
                     /locus_tag="SB143_001386"
     CDS             complement(6673..>7751)
                     /locus_tag="SB143_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HEF9749917.1"
                     /translation="DFDDTHTEAILHASAILTPLCLSYGFHVSKDAKKIIKAFIVGWE
                     IAARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGI
                     NEFLSNGSNSKVLHIANAIKNGIIVAHFAKNHMSGPLSIFEGRDNIFKCFGIEEECDK
                     TELNKALGEIWQTMQVSIKPYPSCHFAHGLIDCAIALKNDGLKADEIKSIHCFVDEVP
                     ISFICDPLEAKYTPNSAYEAKFSMPFLMALGFFDGKITLESYENLKREEVLEFAKKIR
                     YEKRKSQGFPKYFPGHLEASLQDGRTIQKDVFINKGNFDNPLSFEELKAKFLANAQIY
                     LDNAKANKILDQIINLENLNHFSF"
BASE COUNT         2614 a         1138 c         1420 g         2579 t
ORIGIN      
        1 cttcacgggc aaagtatgcg tgtgcccgtt attgatgttt caagcgtgga tttaaccgct
       61 caacttagca aaaaagtaag caaagaggag cttaatgaag cctttagaaa agctgcagct
      121 acaaatttaa aaggcatttt aatggttgat gatgatgaaa gggtatcgag cgattttatc
      181 acttgttctt atggagcggt tgtggtaagt gatttgaccc aagttatagc agatgatttt
      241 gttaaagttg ttgcttggta tgacaatgag tggggatact caagccgcct agtagatatg
      301 gcagtatata ttgcaaataa ggcttaaaaa tgagtgatat tatttctata aaagatattg
      361 atctaagcaa aaaaaaagtt tttataagat gtgattttaa tgtccctcaa gatgattttt
      421 taaatatcac tgatgacaga cgcatcagat cggctatccc tacgataaga tattgtttag
      481 ataatggttg cagtgtgatt ttagcttcgc atttgggtcg cccaaaagag atcagttcta
      541 aatattcttt agagcctgta gctaagcgtt tagcaaggct tttagataaa gaaattgtta
      601 tggcaaaaga tgttatagga gaagatgcaa aaagcaaagc agcaaattta aaagcaagtg
      661 agattttaat gcttgaaaat ttgcgttttg aaaagggcga aactaaaaat gatgaaaatt
      721 tagctaaaga acttgcttct atggccgagg tttatatcaa cgatgctttt ggggtatgtc
      781 atagagcaca cgctagtgta gaggctatca ctaaattttt tgatgaaaac cataagggtg
      841 caggattttt actacaaaaa gagattgaat ttgctgaaaa tcttatcaag cgtcctgcac
      901 gtccttttgt tgctgttgtg ggtggatcaa aagtaagtgg caagcttcaa gctctaacaa
      961 atctacttcc aaaagttgat aaactcatca ttggtggtgg tatggcattt acttttttaa
     1021 aggcgcaagg ttttgatata ggaaattcac ttttagaaga agagctttta gaagaagcca
     1081 ataaaattct tacaaaagga aagaatttag gtgttaaaat ttacttacct gtggatgtag
     1141 ttgctgctcc tgcttgctct caagaatcac caatgaaatt tgtaccttcg caagaaattc
     1201 caagtggctg gatgggttta gatataggtc ctgcaagtgt gagacttttt aaagaggtta
     1261 tttctgatgc acagaccatt tggtggaatg gacctatggg tgtttttgag atcgataaat
     1321 tttcaaaagg cagcataaaa atgagccatg ctatcagcga tggacatgct actactgttg
     1381 tagggggtgg cgatacggct gatgttgtcg cgcgtgctgg agatgcagat gaaatgactt
     1441 ttatttccac aggtgggggc gcttcgcttg agcttatcga aggtaaagaa ttgccaggtg
     1501 taaaagtctt aagaagtggg ggagtgcaat gatatttgct gcaaatttaa aatgcaatca
     1561 tacaagatca agttttaaaa tttatgcaaa tattttaaat cagtatttag aagcaaaaaa
     1621 cgatgatatc atcgtttttc cacctagtat agctttttta gaaaatgaat taaattttat
     1681 acaaggggcg caaaattttt atccttgtgt caatggagct tttacaggtg aacttggaaa
     1741 agagcatttg gatgaatttg gaatcaaatg tgttttgata gggcattctg aaagaagggc
     1801 tttgggtgat gaaaatttaa tcaaagctaa atttgatttt gctaaagagc atgcttataa
     1861 aatcgttttt tgcataggcg aggatttaaa gcttaaaaac tcaaatcaaa ccttagattt
     1921 tttaaaaaaa caacttgaag ttattgacct agattataaa aatctcatta tcgcttatga
     1981 gcctatttac tctataggaa gtggtgtgag tgctaaaaaa gaagatattg ctaaagtgct
     2041 tgaatttctt tcttcgctta cgcaagctcc tttgctttat ggcggaagtg taaatgagga
     2101 caatatcaaa gatattttaa atataaaaca ttgcagcggt gttttaatag gatctgctgc
     2161 attaaaagct gaaaatttta taaaactaat taaaggataa atgatgataa tgaaaggcaa
     2221 aaaaggcctt atagtaggcg tagccaataa taaatccata gcttatggta tagcaaaagc
     2281 ttgttatgag caaggagcaa gtttagcttt tactttttta aatgatgcat taaaaaagcg
     2341 tgttgagcct atagcagaag aatttggatc aaactttgtt tatgagcttg atgtaaataa
     2401 taacgagcat ttagactcta tcgctgaaaa aattaaaaaa gatttaggtg agattgattt
     2461 tatagtacat gctgttgctt atgcgccaaa agaagcttta gaaaattcat tcttagaaac
     2521 ttcaaaagaa gcttttgata tagctatggg aacttctgtg tattctttac tttctttaac
     2581 gcgtgcggta ttgccagtat taaaagaaaa gggtgcaatt ttgactttaa gctatcttgg
     2641 cggggtaaaa tatgtgcctc attataatgt tatgggtgtg gcaaaagcag ctcttgaaag
     2701 ttctgtgcgt tatttggcaa gagatttagg tatcaaagga attcgtgtaa atgctatttc
     2761 agcaggtcct attaaaactt tagcagcaag tggaataggc gattttagaa tgatattaaa
     2821 atacaatgaa atcaatgctc cattaaaacg caatgtaagt attgaagatg taggaaattc
     2881 agcgatgtat ttactcagtg atttagctcg tggtgttacg ggtgaggtgc attatgttga
     2941 tgcaggatat aacatcatgg gaatgggaga tgtcacaaaa gacgaaaatg gaaatactgt
     3001 gctttgttgg gataatcaaa aaggacaata atggcaaaac tcagcaatga agagttaaaa
     3061 gatatactta taaaacgcat tgaaaaaatc gaaaattcag acttggtaga taaaaaaact
     3121 atcaatgaag aaagcgtaaa ggctcttgct aagcatttat ctttgggaaa tgaaattcca
     3181 gctcttgcgc aaaagttttt cgaacttgct cctaagacta aggttgtttg gcttcatctt
     3241 tgcgaatgta caggttgtag tgagagttta ttgcgtgcgg atttaccaag ttttgatgaa
     3301 ttagtttttg actttttttc tttagagtat cacgaaactt taatggcagc aaatgggaca
     3361 aaagctgaag aacttttaga gcatgtttta aaagaagatt ttgttttagc ggttgaaggc
     3421 ggtgttgcag ctattgatac attttttctt actataggtg cagagggtga gagtggttat
     3481 gaaattttgg aaaaattagc agctaaagcc aaagctattt ttgctgtggg aacttgttct
     3541 tcttatgggg gaattcaagc tgcttatcca aatccaagca aaacttgcgg tatttctgaa
     3601 gttttaaccc aaaaagtagt caatatccct ggctgtcctc caagcgatgt aaatatcatc
     3661 gcaaccttga cttatcttgc tttatttgga attttacctg aacttgatga gcaaaaccgc
     3721 cccgtttggg cttatggtaa atgtttgcat gatttgtgcg aaagaaaggc taaatttgag
     3781 agtggaattt ttgcagaaca ttttgatgat gaaaaggcta aaagtggagc ttgtttattt
     3841 aaaataggct gtaaaggtcc ttatacttat aataattgtc ctaaagtaaa atttaatgct
     3901 aaaacttctt ggcctgtggc tgcagggcac ggctgtatag cctgtagtga aaagaatttt
     3961 tgggatgaat ttggaaatta tgaaaaacct atggcaaatc ctttttctta tgctaagctt
     4021 gtaaatcagg aatttagtac agaatttgcc ctagaagagc aaattcaaat cctatcttcg
     4081 atggattttg aatttgaaag taatttaaag cttatcttgc aaaacattgc taaaaataaa
     4141 ttaggtgctt tacttgtaga aaattacaaa acatcttttg aaaaaaactt tatttttata
     4201 gagcaaaatt ttgatgaaaa tcctatgcct tctagtgata tttggaagta ttttgagatc
     4261 aattttattt tggcaaaggg tgagttttta caagataaaa acgatttttt aaaagcggcg
     4321 caaaattata gctttaagca tgcaagtcct tatgatttta aacttactct taatgaaaaa
     4381 tcaaaacttg atgtgagtaa atcttttcgt atgcctttga tttatctttg cggagggctt
     4441 gattttgaag ctcttgctta tagcgttttg aaggcttttg aaaaaaatat taaaagcgtg
     4501 atagacttta ataaacaaaa agcgggttaa ttgattacaa attttgtaat atttaaccct
     4561 ataaaagcca ctatataggc gctgatgcaa gtaaaaagaa aaaggaaaaa agtatatttt
     4621 atttttccgc tttcttttga aaagactatg gttgcagcaa agcaaggatt ataaatcatt
     4681 acaaataaaa tatacgccac cgcactaggc aaaggaatat ttttagcaat aattcctttt
     4741 aaatcattat ttgtttcatc tacatctttt cctagtgaat aaagtactcc catagttgaa
     4801 atcattactt ctttagcggc caaaccactg attaaagata cgcttaattt ccaatctaac
     4861 tcaaggggtt taaaaatagg ttctatgcct ttgccaaatt gtcctagata actttgttct
     4921 atagctcttt cttgagcgtt aaaatcattt aaattttctt cattttttgg aaaattgcta
     4981 gcaaaccata tgagcaaaga ggccaaaagt atgaaagttc ctgctttttt aagatacatt
     5041 ttggctttat tataaaccat aaaccaaact aaatgccaat ttggcatacg atattttggc
     5101 atttccatca caaagggttc atcaataccg cgaaatgcag tggatcttaa gaatttggcc
     5161 gcaataagcc ctaaaatagc acctagaaga taaattccaa aaaggtaatt ccccgcttct
     5221 tcacttggga aaaatgcacc gataaacaat acataaacag gaagtcttgc cccacaactc
     5281 ataaaattaa tcacaaaaag agttaaaagc ctatctcttt tgttcttaag agtgcgtgta
     5341 gccataaaag caggtaccga acaaccaaaa ccagtgatta gcggaatgaa gctttttcca
     5401 tgtaaaccaa atttatgtaa aattccatct agtaagaaag ctactcttga catatagcct
     5461 gtggtttcta aaagagctat gcctaaaaat aaaattatta tattaggtaa aaaaaaagta
     5521 tcacagcacc aacacctgcg ataatcccat cagctaaagc tgaagcgatg aaggtattag
     5581 aaatattgtt tttaacaagt tcacctaagg cattaaagcc tgattctata taatccatag
     5641 gaatttgccc taagctaaag gtgagttgaa ataaaagcca cattaaaaat aaaaatatag
     5701 gtaagccaaa gaatttatgg ataagtaagg catcgatttt tttggttaaa tttctttctt
     5761 cttttttgtg tgtgataatt ttttttgaaa gttcattaat aaaatataat aaatcttctt
     5821 tttccggact tttttcgcaa agcggagtat aaaattgaga tcttggaata aatttacttt
     5881 caaataaaat aataattttt tgcagcaaaa gttctaaatt ttcttttgtt tttgctgaaa
     5941 tttcaacaac ttgactttga aattcttggc ttaaaacaga agtgtcaagc tctatacctt
     6001 cttttttggc ttcatcgcac atatttaaag ctaaaagcat ttttttatta aggcttaaaa
     6061 gttctgcact aaggataaga ttacgttcta aattggtagc atctaaaaca ttaacaataa
     6121 catcatagtc attttgattt aaaaaatggc gtgtgatttt ttcttcttca ctatatccat
     6181 ctaaagaata agttcctggt aaatcaatga cttcaaattc atagtttttg taaaaagttt
     6241 ttgcacttgc tttttctata gtaactccgc taaaatttcc tactttcata ttagctttgc
     6301 aaagcgcatt aataagaaga cttttgccta cattaggctg acctacaagg gctattttga
     6361 tttttttcat ataagattca cttctatggt tttagcttca tcagatctta ggataacaca
     6421 acttgtatca agttctacca ttatggtggc attttttaaa gaggaatgaa tttttttcaa
     6481 gtttttattt ttaataaatc caaagcttaa aagtctattt ttgagttctt tgtgagcgtt
     6541 taaattgaca ataatagctt tttgtccatc ttttaactcg tttaaagtca ttgtaattcc
     6601 taaattaata ataaatatta taataaaaaa gtgtaatgaa attatccttc ttgtaaaaag
     6661 aaggataaat atttaaaaag aaaagtggtt taaattttct agattgatga tttgatctag
     6721 aattttgtta gctttagcat tatcaaggta aatttgtgca ttggctaaaa atttagcttt
     6781 taattcttca aaacttaatg gattatcaaa attaccttta tttataaaaa catctttttg
     6841 gattgtgcgt ccatcttgca aactggcttc taaatgccct ggaaaatact ttggaaagcc
     6901 ttgagatttt cttttttcgt acctgatttt tttagcaaat tctagtactt cttcacgctt
     6961 taaattttca taagattcaa gagtgatttt accatcaaag aatcctagag ccattaaaaa
     7021 aggcatggaa aatttagctt cataagcact atttggagtg tattttgctt ctaaaggatc
     7081 gcagataaaa gaaataggaa cttcatctac aaaacaatga atacttttaa tttcatcagc
     7141 ttttaaacca tcatttttta aagcaatagc acaatcaata agcccatgag caaaatgaca
     7201 acttggataa ggcttgattg aaacttgcat agtttgccaa atttctccta aggctttgtt
     7261 aagttctgtt ttatcgcatt cttcttctat gccaaaacat ttaaagatat tatccctacc
     7321 ttcaaaaata ctcaaaggtc cactcatatg gtttttagca aaatgagcta ctataatacc
     7381 gtttttaata gcattggcaa tatgcaaaac ttttgaatta gatccattgg ataaaaactc
     7441 attaatccca cttgcaaaac ttcctgcaag tcctaaagca ttgatgattt gttctttgtt
     7501 aagatctagc aagattgcac ttgcacttac gcttccaaaa attcctgcaa tagcagtggt
     7561 atgaaaacca cgcttatgaa aagtaccttt gcttgcaatg cctactctag ctgcaatttc
     7621 ccagcctact ataaaagctt tgatgatttt tttcgcatct ttgctaacat gaaaaccata
     7681 acttaaacaa agtggagtta aaattgcact tgcatgcaaa atcgcttctg tatgtgtatc
     7741 atcaaaatca a
//
LOCUS       DARAII010000080         7742 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.080, whole genome shotgun sequence.
ACCESSION   DARAII010000080 DARAII010000000
VERSION     DARAII010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7742
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.080"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1279)
                     /gene="lysS"
                     /locus_tag="SB143_001387"
     CDS             complement(<1..1279)
                     /gene="lysS"
                     /locus_tag="SB143_001387"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEF9749918.1"
                     /translation="MFDNILEQQRIQKANELKNAGVNPYPHFLVKELSLADFKKKFSY
                     IFDTENKRDESISSVISGRLKLLRIAGKSIFANIEDENENLQIYFSKDSLGEEKFNLF
                     KKNLEVGDIILAKGFPFVTKTGEFSLHASEITLATKSIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNAEVRKDFLTRSKVVSLIRHFFEEKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLVVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLEKLQLGKIIEFDGQKIDFSKPFERITYKDALKKYGALSDEII
                     ENKDKILEKLKKDGFEANDKLDLGHLQAELFDNYVESKLIDPTFITDFPISISPLSRR
                     SDKNSEIAERFELFVCGRELANGFNELNDPLDQY"
     gene            complement(1279..1749)
                     /locus_tag="SB143_001388"
     CDS             complement(1279..1749)
                     /locus_tag="SB143_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEF9749919.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREILLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCNNCNQKAKVKI"
     gene            complement(1753..2313)
                     /locus_tag="SB143_001389"
     CDS             complement(1753..2313)
                     /locus_tag="SB143_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEF9749920.1"
                     /translation="MEFYWFDAFILGFTLLLGLKGIVSGLIKEVFGLLGIIGGVFIAS
                     KYASQAAEFIQNTFYKIENQSLANFAGFLAILIIFWIICLVLGNFISKLVKLSGLGFL
                     DRLGGFIFGGAKVFLIFAILVFCVARIDFLNDKLNQFAQNSFTLTPLKNIGSFIMNQS
                     LTTSSLGQIDQNLQDIRDDLSTTQGE"
     gene            complement(2394..2681)
                     /gene="gatC"
                     /locus_tag="SB143_001390"
     CDS             complement(2394..2681)
                     /gene="gatC"
                     /locus_tag="SB143_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004286380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEF9749921.1"
                     /translation="MQIDEKLLSKLEKLSALQIEEEKRSEVICELSEIVNFVEKLNEL
                     DLSSSEVTISTIKGGAPFRSDSVNSSNVVETVLNHAPKSNDHFFIVPKIIE"
     gene            2813..3391
                     /locus_tag="SB143_001391"
     CDS             2813..3391
                     /locus_tag="SB143_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749922.1"
                     /translation="MGLKDNLKAVKAEINTEEQFIENFIKGERFIKKYKLYIFALIAI
                     LIIWLTISFISGKIEQYNIEESNKIYTSLLNNPNDQALLEQLKNKNANLYAIFLMKEL
                     AKDINNTEIKSQLQSLSSNSDANHLLKNIISLPLGEKSIFLKNYDKILQAYRLLGEGK
                     IEQANILLSQIKDDSALSQIAKNLKHYQGISR"
     gene            3388..4386
                     /locus_tag="SB143_001392"
     CDS             3388..4386
                     /locus_tag="SB143_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749923.1"
                     /translation="MRQFFLISFCLIFLCACGTKRQYFEPSQTDGKLSSNDSLKSSIV
                     DWNTISAKLKNNQVILKNDAIIEDFKLDKGYILLAYQEGEFIEADDNGNLKIYNSSHD
                     EVYSYKFDAAVLGVALHGDDLALVLANNSIVLANRSLGIKFSQNLTPAPAQDSRVANP
                     IFLDNIIIYPTLDGKITIVSKNTFEVVKDVVISAESFFNNVIHLDINDDKMIAATAKK
                     VIVVSPARTLYLDADIKDIALDSNALFILEKNGNIIKTDYNLRKITEKKFDFAIFTKV
                     SIHNDHLYAFEKTGYLIKCDLNLENIQIFELPNAVEKISFMGNGKFYYGDKILDLL"
     gene            4383..4670
                     /locus_tag="SB143_001393"
     CDS             4383..4670
                     /locus_tag="SB143_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HEF9749924.1"
                     /translation="MNILNEAMKVLKLNLKPFDLTNLTKKKTYLCALNDENLLLIYTG
                     KARFINKDAIFINNLANDFDLKYKYFFTKSPLCSKAKHYLEEKGFHIHAIL"
     gene            4657..5286
                     /locus_tag="SB143_001394"
     CDS             4657..5286
                     /locus_tag="SB143_001394"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEF9749925.1"
                     /translation="MLFCDIGNSNASFLDDNKFFTLNIEQFLEFKSEQKIFYINVNEH
                     IKEHLKARKNFINLEPYFVFDTIYQGLGVDRIAACYTIEDGVVVDAGSAITVDIVSNS
                     IHLGGFILPGIANYRKIYAHISPRLKHEFNTQISLDAFPQKTSDALSYGVFKSIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDYAIYDKLLIFRGMKKIIQENPNLLF"
     gene            5413..6759
                     /locus_tag="SB143_001395"
     CDS             5413..6759
                     /locus_tag="SB143_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEF9749926.1"
                     /translation="MTQQEFDVIVIGAGISGAALFYELARYTDIKNIALIEKYHAPAT
                     LNSKGTSNSQTIHCGDIETNYTLEKAKKVKRTADMIVKYGLLQNAQNQFMFSHQKMAL
                     AVGDSECEYMKKRHEEFGELYPYMKFFNKDKIKQIEPKVALGENGRDDRPENICAMGV
                     EAGEVFTTVDFGKMSASLVEQGQKQGKNTFVAFNQEIVHIEKKDDIFILKTNTYQEYR
                     SKAVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFSMFKDP
                     TIRNYILYNYLFELPFIDKGLFVKDAKKIVPSLKTSDIYYAKGFGGVRPQVIDKTRGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLMCEYLGAKFDEDKFASELL"
     gene            6811..>7742
                     /gene="pyk"
                     /locus_tag="SB143_001396"
     CDS             6811..>7742
                     /gene="pyk"
                     /locus_tag="SB143_001396"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEF9749927.1"
                     /translation="MLKKTKIVATVGPASEKEDVLRQMIINGVNVFRLNFSHGTHEYH
                     KNNLETIRKVSRELNTRVGILQDISGPKIRTGELKTPFELKKGDRLDFYYEKIIGEQI
                     APNHYKLSINQSEILNMLKLDEYVYLYDGSIRAKVTAKDSEKIETLIENDGFLNSNKG
                     INFPNTKINIDVITQKDKKDLLWGIENEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIASSDGIMVARGDLGIEVPYYKVPNIQKAIIHKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAV"
BASE COUNT         2871 a         1216 c         1116 g         2539 t
ORIGIN      
        1 catattgatc taaaggatca tttaattcgt taaaaccatt ggctaattct ctaccacaca
       61 caaaaagctc aaagcgctct gctatctcag aatttttgtc actacgacga gaaagtgggc
      121 taatagatat tggaaaatct gtgataaaag taggatcaat aagtttactt tctacataat
      181 tatcgaaaag ctcggcttgc aaatgcccta agtcaagctt atcatttgct tcaaagccat
      241 ctttttttaa tttctctaaa atcttatctt tattttcaat aatttcatcg cttaaagcac
      301 catacttttt aagcgcatct ttataagtaa ttctctcaaa aggtttggaa aaatcgattt
      361 tttgtccatc aaattctatg atttttccta attgcaattt ttctaaaagc aaggcaaaaa
      421 gttcttcagt aagatccatt aaatctttat aattatgata agcccaataa aactcaattg
      481 tagtaaattc agggttatga gtaagatcca ttccttcatt tctaaaacaa cgattgattt
      541 caaaaactgc ctcaaaacca cccactacaa gtctttttaa ataaagctca ggtgcaattc
      601 ttaaaaatct ctcaacccct aaagaattat gaaaagttac aaaaggttta gcatttgcac
      661 cacctgcaat ggggtgcatc ataggagttt caacctctaa aaagcctttt tcttcaaaaa
      721 aatgacgaat caaacttaca actttagaac gagtcagaaa atcttttcta acctctgcat
      781 tcataatcat atctacataa cgcttacgat atctttgttc tatatctgta agtccatggt
      841 atttttcagg caaaggtact attgatttag ttgctaaagt gatctcactt gcgtgcaagc
      901 taaactctcc cgttttagta acaaaaggga agccttttgc aaggatgata tcacccactt
      961 caagattttt tttgaataaa ttaaattttt cctcacctaa agaatcttta ctaaaataaa
     1021 tttgcaaatt ctcattctca tcttctatat tagcaaatat agatttacca gcaattctaa
     1081 gaagctttaa gcgtccagaa atgacagaag agatactttc atcgcgttta ttttcagtat
     1141 caaaaatata gctaaatttc tttttaaaat ctgctagaga aagttcttta actaaaaaat
     1201 gtggataagg atttactcct gcgtttttaa gctcattagc cttttgaatt ctttgttgtt
     1261 ctaaaatatt gtcaaacatt aaatttttac cttagctttt tgattacaat tattacacac
     1321 accataaagt tgcattaaat gtcccgtaag tttaaatcca tgctctttag caatcaaggc
     1381 ttgctgtctt tcaatgatag gattttcaaa ttctataatt tttccacaat ttttacaaat
     1441 catatgatca tggtgtggtt tattggcaag ctcgtatttt tttccagccg aaccaaatga
     1501 tatagaagta accatttctg cttcttcaag caaatttaaa gtcctataaa ccgtagcaat
     1561 acctacattc aaatccggtt ctgcttgttt aatctccata tataaacttt caggagtata
     1621 atgtgtatca ctatgatata aggttttgag taagatttct ctttgtttgg tatatttaag
     1681 accaccttgt cgtaaaattt tcttaaatct ttctagtaat acatcgtatt ctacattctc
     1741 aatcaacata ttttattctc cttgagtagt acttaaatca tctctaatat cttgcaaatt
     1801 ttgatcaatt tgacccaaac tacttgttgt tagagactga ttcattataa atgatcctat
     1861 atttttaaga ggagttaaag taaaactatt ttgggcaaat tgatttaatt tatcatttaa
     1921 aaaatcaata cgcgccacac aaaaaactaa aattgcaaaa attaaaaata cttttgcacc
     1981 tccaaaaata aaccctccca aacgatctaa aaatcccaaa ccgcttaatt taaccaattt
     2041 agaaataaaa ttgccaagca cgagacaaat tatccaaaaa ataattaaaa ttgctaaaaa
     2101 tcctgcaaaa ttagccaaac tttgattttc tatcttatag aaagtatttt gaataaattc
     2161 tgcagcttgc gaagcgtatt ttgaagcaat aaaaacaccg ccgataatcc cgagcaaacc
     2221 aaatacttct ttaatcaaac cacttacaat acccttaaga cctaaaagta gagtaaaacc
     2281 taaaataaaa gcatcaaacc agtaaaattc catattttaa ttcaccttac caaagcattt
     2341 aaaaatcact taaaattata aattatacaa acaagaacca aacactagat taatcactca
     2401 atgattttag gaacaatgaa aaaatgatca ttgctttttg gggcatgatt taaaaccgtt
     2461 tctactacat tgctactatt aacactatca cttctaaaag gtgctccacc tttaatggtg
     2521 ctgattgtaa cttctgaaga acttaaatct aattcattta acttctcaac aaaattcaca
     2581 atctcactaa gttcgcaaat cacttcactt cttttttctt cttcaatttg taaagcactt
     2641 agtttttcaa gcttgctaag caatttttca tctatttgca tcttaaacct tactaaaata
     2701 aagtcaattt ttaaaattat atcataaaaa gctttaaatt gtttaggata ttttgtaatt
     2761 tatatgatac aatactgcag ttttttaaaa ttaaaaatta caaggataaa ttttgggatt
     2821 aaaagataat ttaaaagccg taaaagcaga aatcaatacc gaagaacaat tcattgaaaa
     2881 ttttatcaaa ggtgagagat ttataaaaaa atataaatta tatatatttg cacttatagc
     2941 aattttgatt atttggttga ctataagctt tatcagtggt aaaatcgaac aatacaatat
     3001 cgaagaaagc aataaaattt acacaagttt attaaacaac ccaaacgatc aagcacttct
     3061 tgaacaactt aaaaataaaa atgctaatct ttatgcaatt tttctaatga aagaattagc
     3121 aaaagatatc aacaataccg agattaaaag tcagttgcaa agcttaagta gcaattctga
     3181 tgcaaatcat ttgcttaaaa atattatttc tcttcctcta ggagaaaaat cgatattttt
     3241 aaaaaattac gataaaattt tacaagctta tagactttta ggagagggaa aaatcgaaca
     3301 agctaatatt ttactttctc aaattaaaga tgactcagcc ctaagccaga ttgctaaaaa
     3361 tctaaaacac tatcaaggca tttcccgatg agacagtttt ttttaatctc attttgtctt
     3421 atttttcttt gcgcttgtgg aactaaaaga caatactttg aaccttcaca aaccgatgga
     3481 aagctaagtt ctaacgatag cttaaaatct agtattgtgg attggaatac aatttcggca
     3541 aaactcaaaa acaatcaagt aattttaaaa aatgatgcaa taattgaaga ttttaaacta
     3601 gataagggct atatactttt agcatatcaa gagggtgaat ttatcgaagc agatgataat
     3661 ggaaatttaa aaatttacaa tagttctcat gatgaagttt attcttacaa atttgatgct
     3721 gcagttcttg gagtagcttt acatggagat gatttagcac ttgttttagc aaacaatagc
     3781 attgttttag ccaatcgctc cctaggtata aaattcagcc aaaacctaac acctgcaccc
     3841 gcacaagata gtcgcgttgc aaatcctatc tttttagaca atatcattat ttatccaact
     3901 ttagatggga aaattacaat cgtatcaaaa aatacttttg aagttgtcaa agatgttgtg
     3961 atttcagcag aaagtttttt taacaatgtc attcaccttg atataaatga tgataaaatg
     4021 atagctgcaa cagctaaaaa agttatagta gtaagccctg ctagaactct ttacttggat
     4081 gctgatatta aagatattgc actagatagc aatgcgctat ttatattaga aaaaaatggc
     4141 aacatcataa aaacagacta taatctaaga aaaatcacag agaaaaaatt tgattttgct
     4201 atctttacaa aagttagcat acacaatgac catctttacg cttttgagaa aacaggctat
     4261 ttaatcaaat gtgatctcaa tcttgaaaat attcaaatct ttgaacttcc aaacgcagtt
     4321 gaaaaaatat cttttatggg caatggaaag ttttattatg gagataaaat tttagattta
     4381 ttatgaatat tttaaatgaa gcaatgaagg ttttaaagct gaatttaaaa ccttttgatt
     4441 taacaaattt aacaaaaaag aaaacttatc tttgtgcttt gaatgatgaa aatttacttt
     4501 taatatacac aggaaaagca agatttatca acaaagatgc tatatttata aacaacttag
     4561 ccaatgattt tgatctaaaa tacaaatatt tttttactaa aagccctctg tgctcaaagg
     4621 caaaacatta ccttgaagaa aaaggatttc atattcatgc tattttgtga tattggcaat
     4681 tccaatgcta gttttttaga tgataataaa ttttttaccc ttaatataga acaattttta
     4741 gaatttaaaa gtgaacaaaa aattttttat atcaatgtta atgagcacat taaagaacat
     4801 ttaaaagcac gcaaaaactt tataaatctt gagccttatt ttgtatttga taccatttat
     4861 caaggcttgg gtgtagatcg aatcgcagct tgttacacta tagaagatgg agttgtggta
     4921 gatgctggca gtgcaattac ggtagatata gtatcaaatt ccatacattt aggaggtttc
     4981 atcttaccgg gtattgctaa ttatagaaaa atttatgctc atatttctcc tagattaaaa
     5041 catgagttta atacccaaat cagtcttgat gccttcccgc aaaaaacaag cgatgctcta
     5101 agttatggag tgtttaaaag tatttatttg cttataaaag atgctgcgca aaataaaaaa
     5161 ctttatttta caggtggaga tgggcagttt ttagcaaatt attttgatta tgctatttac
     5221 gataaacttc tcatctttag aggaatgaag aagattatac aagaaaatcc gaatctactt
     5281 ttttaatttg taatgttaca aaaattctca ttctgtatat tcttcaatca aatttaactt
     5341 tttataaaat aaattggatt acacttttat ttagaaaaat taactttact agaagcaaaa
     5401 aaaggaaaaa aaatgactca acaagaattc gatgtaattg tcatcggagc aggaatttct
     5461 ggagcagctc tattttacga gcttgcaaga tatactgata ttaaaaatat tgctttaata
     5521 gaaaaatatc atgctcctgc aacattaaat tctaaaggaa caagcaattc tcaaactatt
     5581 cattgtggag atatcgaaac aaactatact ctagaaaaag ctaaaaaagt taaaagaact
     5641 gctgatatga tagtaaaata cgggcttttg caaaatgctc aaaatcaatt tatgttttct
     5701 catcaaaaaa tggccttggc tgttggtgat tcagaatgcg aatacatgaa aaaacgccat
     5761 gaagaatttg gcgaacttta tccttatatg aaatttttta ataaagataa aattaaacaa
     5821 attgagccta aagtagctct tggagaaaat ggcagagatg atagacctga aaatatctgt
     5881 gctatgggag tcgaagctgg agaagttttt actacagtag attttggaaa aatgagtgca
     5941 agtttggttg aacaaggaca aaaacaaggc aaaaatacct ttgtagcttt caatcaagaa
     6001 attgttcata tagagaaaaa agatgatatt tttatcttga aaacaaacac ttatcaagaa
     6061 taccgttcta aggctgtagt tgtaaatgct ggtgcacatt ctttgtatct agcacataaa
     6121 atgaatttgg gtatggataa atcttgttgg cctgtagcgg gaagctttta tttaaccaaa
     6181 caaaaactac tcaatggtaa agtctatatg gtacaaaatc caaaactacc ttttgcagct
     6241 cttcatggag atcctgactt gcttgcagat atgaatactc gttttggccc tactgcccta
     6301 gttattccaa aacttgaacg ctaccatggt ttaaaatctg tccctgaatt ctttgaagcc
     6361 ttaaaacttg acaaaaccgt cttaaaggtt acttttagta tgtttaaaga tccaacgatt
     6421 agaaattata tactttataa ctatcttttt gaattacctt ttattgataa aggtttattt
     6481 gtaaaagatg ccaaaaaaat agtccctagc ttaaaaacaa gtgatattta ttatgcaaaa
     6541 ggctttgggg gagtgcgtcc tcaagtcatt gataaaacta gaggagaatt aatgctaggt
     6601 gaagcaagca ttaccgaaac tcccggaatt atttttaata tgactccaag tcctggagca
     6661 acaagctgtt taggcaatgc tgaaagagat gctaagctta tgtgcgagta tttaggagct
     6721 aaatttgatg aggataaatt tgcttcagaa ttattgtagt ctttttgttt ccaaagtttg
     6781 attataatta aacaaaaaaa ggagaacagc gtgctaaaaa aaactaaaat tgtagctaca
     6841 gttgggccag caagcgaaaa ggaagatgtt ttacgccaga tgataatcaa tggcgtaaat
     6901 gtttttcgtt taaatttctc tcatggaaca catgaatacc acaaaaacaa tcttgaaacc
     6961 atacgcaaag tttcaagaga acttaacact cgcgtaggaa ttttacaaga tataagcggg
     7021 ccaaaaattc gcacaggaga gctgaaaact ccttttgagc ttaaaaaagg tgatagactt
     7081 gatttttatt atgaaaaaat cataggcgaa caaattgctc caaatcatta taaacttagc
     7141 atcaatcaaa gcgaaatttt aaatatgcta aaattagacg aatatgtcta tttatatgat
     7201 ggttcaatca gggcaaaagt gactgctaaa gatagtgaaa aaattgaaac tctcatagaa
     7261 aatgatggtt ttttaaattc aaacaagggt attaattttc caaatactaa aatcaatatt
     7321 gatgttatca cacaaaaaga taaaaaagac ttactttggg gtatagaaaa tgaagtagat
     7381 ttcctagcta tttcttttgt tcaaaatgct catgatattg atgaagttcg tgaaatttta
     7441 gctcaaaata atgctaaaat ttctatattt gcaaaaatag aaaaatttga cgcagttgaa
     7501 aatatagatg aaattatagc atctagtgat ggtataatgg tcgcgcgtgg agatcttggt
     7561 atagaagttc cttactataa agtacctaat atacaaaaag caattattca caaagccaat
     7621 aatgcttcaa aacctgttat aacagctaca caaatgcttt tttctcttgc aaaaagcaaa
     7681 actgctacaa gagccgaaat ttcagatgtt gctaatgctg ttttagatgg gacagatgct
     7741 gt
//
LOCUS       DARAII010000081         7723 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.081, whole genome shotgun sequence.
ACCESSION   DARAII010000081 DARAII010000000
VERSION     DARAII010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7723
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.081"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..986)
                     /locus_tag="SB143_001397"
     CDS             complement(<1..986)
                     /locus_tag="SB143_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEF9749928.1"
                     /translation="MKNNKIIIFDTTLRDGEQALGSSLNINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFEAVKNIASKVKNSTICALSRALDKDIDTAYEALKVADSFRIHTFIA
                     TSTLHIQDKLKKDFDEILAMAQRAIARARNYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGARTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAVISVHCHNDLGMATGNSLSA
                     ILQGARQIECTMNGLGERAGNCALEEVVMAIKTRSDYLKGFYTDIKCENISKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSSIGLHENRML"
     gene            1333..1962
                     /locus_tag="SB143_001398"
     CDS             1333..1962
                     /locus_tag="SB143_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749929.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRRKEYEIYGPMV
                     DRVYLDNAIYVKVMASGRDVKTDNVPIKTGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NTFISTLIRSCQRFKEIISKTQATLSKASKMNVLIKTNLGEASAALKFNITIEYTKEN
                     QKLTRENTKSAGSFRDTRTYINLVVDKNTDSQICEKLLDDVERYFIGGG"
     gene            complement(1986..2630)
                     /locus_tag="SB143_001399"
     CDS             complement(1986..2630)
                     /locus_tag="SB143_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEF9749930.1"
                     /translation="MNKKFLSVIVGIALFSSSALAAEESGFFIGADAAYVQTKVKGDL
                     KHNKTGAVFNGDLSSSIPILGLRMGYRFNDLHRLYAAYNYSDEFSDIIRTPNLRIEGD
                     FNTHKFLLGYDFTPEIFKRVRAVAGGYLGYAKTSIDLKTSLLSLSQDFDGFVYGAKIG
                     AIFELGASNEIEVGFKAEQIEYNTRNYYQEAIGSNFYDPRQTNYGLYLGYTYKF"
     gene            complement(3044..3370)
                     /locus_tag="SB143_001400"
     CDS             complement(3044..3370)
                     /locus_tag="SB143_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEF9749931.1"
                     /translation="MKTKIIPAILACSAILASANMVPASTQTPAVAPAPLHPYPAYPQ
                     QAMPPQDYFNGLPKNINSQIQNLHPGAFIVDVDWEEYGYEVKLNNFMELYFDRNGNFL
                     GQKFDD"
     gene            complement(3557..3940)
                     /gene="queF"
                     /locus_tag="SB143_001401"
     CDS             complement(3557..3940)
                     /gene="queF"
                     /locus_tag="SB143_001401"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEF9749932.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYIPDQFVVELKAIKLYINTFMHRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            4099..4698
                     /locus_tag="SB143_001402"
     CDS             4099..4698
                     /locus_tag="SB143_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEF9749933.1"
                     /translation="MRKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKTQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGASKSEIKGLEDFVIPHELMPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRN"
     gene            complement(4703..5584)
                     /gene="metA"
                     /locus_tag="SB143_001403"
     CDS             complement(4703..5584)
                     /gene="metA"
                     /locus_tag="SB143_001403"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEF9749934.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGSRRAKHQDIRPQEILIINLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLDEVKKRKFDGA
                     IVTGAPVEQMDFEKVAYWKELLEIFDFLQQNVTSSMYICWGAMAALKHFHGVDKIALD
                     KKIFGIYKHDKISPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKVLLRNKKI
                     GSALLRDEKNIFILGHLEYFKDTLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(5595..5816)
                     /locus_tag="SB143_001404"
     CDS             complement(5595..5816)
                     /locus_tag="SB143_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEF9749935.1"
                     /translation="MVTLDTRGKVCPFPLVEAKNLVQTLKSGEELEILFDCTQATETI
                     PQWAAEEGHEIVDFELLGDAEWRIKLIKK"
     gene            complement(5826..6860)
                     /locus_tag="SB143_001405"
     CDS             complement(5826..6860)
                     /locus_tag="SB143_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeeE/YedE family protein"
                     /protein_id="HEF9749936.1"
                     /translation="MLSGIIVGLLLGFVLQRGRFCVVGAYRDVFLSKKFTIFIALFIV
                     VALQSIGVWALHSLGYISIKPQEFYWLSTIIGGIIFGFGMVIAGGCATGTWYRAGEGL
                     IGSIAALLFYAFSASAVKYGVLLPLQDNLNTFKISDGTFYQSLGISPWILVLALSLVV
                     GFFVIRELRKPRLKVARLKPRKQGISHILFEKSWHPFVTAVLVALIAILAWPLSSLSG
                     RNYGLGITTPSANLVQYLSTGDVQFVDWGVFLVLGIALGSFLGAKLSGEFRFRLPDKK
                     TLAYASIGGILMGVGASLAGGCTIGNGLVETSLFSYKGWVATVFFLIGAYIATFYTII
                     LPTRKATQKI"
     gene            complement(6872..>7723)
                     /locus_tag="SB143_001406"
     CDS             complement(6872..>7723)
                     /locus_tag="SB143_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEF9749937.1"
                     /translation="IDQNTKAIFFESLSNPQIAIADIEKITQIAKKHKIATICDNTVA
                     TPFLLQPFKHGVDIIVHSLSKYVSGQGSALGGALIERKDLNDLLKNNDRYKTFNTPDP
                     SYHGLNLNTLDLPIFSIRIIITWLRDLGASLAPQNAWLLLQGLETLAVRIEKHSQNAE
                     KVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFDKNFASGLLSFEARDYEHARRICDK
                     TQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQKAGIKKTTVRLSIGLENSDDLIAD
                     LKQAIES"
BASE COUNT         2704 a         1332 c         1129 g         2558 t
ORIGIN      
        1 agcatacgat tttcatgaag tcctatgctg ctagggctta taatttcata agtttgtcta
       61 tttttaagta ctccatcttg atgaattcca gaactatgag aaaaggcgtt acttcctact
      121 atggctttat gtgaaggtat gctttcatta gtgatagctg aaactaattt tgaagtttta
      181 gaaatatttt cacacttgat atctgtataa aaacctttta aataatcgct tcttgttttt
      241 atcgccatta caacttcttc caaagcgcaa tttccagccc tttcaccaag cccattcata
      301 gtacattcta tctgtcttgc gccttgtaaa atagcactta agctattgcc tgttgccata
      361 cctaagtcat tatgacaatg cacagaaata acagctttgt ctatattggg tactttgtta
      421 aataaaattt tgatgatatt agcaaattca cttggcaaag tataacccac agtatcaggt
      481 atattgatag ttctagcccc tgctttgata gcattttcta ccataaaaca aagattatca
      541 ataggagttc ttcctgcatc ttcacatgaa aattccacat catcagtata gtttctagct
      601 cttgcaatcg ctctttgtgc catagctaaa atttcatcaa aatctttttt taatttatct
      661 tgtatgtgca aagttgaagt ggctataaaa gtatgaattc taaaagaatc cgccactttt
      721 aaagcctcat aagcggtatc tatatcttta tccaaagctc tagaaagcgc acaaatggtt
      781 gaatttttta cttttgaggc tatatttttt accgcttcaa aatctccttg tgaagataca
      841 ggaaaacctg cttctatcac atcaacacct aaattttcaa gcgctaaggc aatctgtaat
      901 ttttgattta tatttaaaga actgcctaag gcttgttcac catcgcgtaa agttgtatca
      961 aaaatgataa ttttattatt cttcatattt taatccttaa aaaacgagat aaaccgaatg
     1021 aattttatta aaaattcaaa aacttaaaaa caatagtaaa ataaataaat ttcagaaatg
     1081 attaaaaaaa ataaaaattt tagtttagga tgagtgagag ttgcagcatc aggttaaagt
     1141 gattttcttt atttttttgc tctttgactt gaattgaatt tgaattttta aaaacctgtg
     1201 tcattgtcgc ctccttcata aaattatata gtttcgaatt tagcatattt ttagttaata
     1261 cacaaaataa aaatttacaa attaagaaat ttattgttat aattgtaatt ttaagtaaca
     1321 aaaaggatgt tgatgttaaa agagctttta gaaatcaaaa aagaaatgga gcctgttatc
     1381 catgaagcta atgtaaaatt aaatgtattg gctcgtgaag taatagttcg tagaaaagag
     1441 tatgaaattt acggacctat ggtagatcgt gtctatcttg ataatgcaat ttatgttaaa
     1501 gttatggcaa gtgggcgcga tgtcaaaact gataatgtcc caatcaaaac aggtttttac
     1561 atggtttttg ttgctcctga aaaagaaagt acaaaagaca tcaaaaataa acttaaagta
     1621 gcttatgaag gacttgataa tacattcatt tcaacgctca tccgctcttg ccaaagattt
     1681 aaagaaatca tatctaaaac ccaagctacc ctctctaaag cttcaaaaat gaatgtttta
     1741 ataaaaacca atctaggaga agcaagcgcg gctcttaaat ttaacatcac catagaatac
     1801 accaaagaaa accaaaaatt aacacgcgaa aatacaaaat cggcaggaag ttttagagat
     1861 actagaactt atatcaatct tgtagtagat aaaaatactg attctcaaat ttgtgaaaaa
     1921 ttgctagatg atgtagaaag atattttatc ggtgggggtt gaaatcctac cgataaaata
     1981 cttcattaga atttgtaagt ataacctaaa tataaaccat aatttgtttg tcttggatca
     2041 taaaaattcg accctatagc ttcttggtaa taatttctag tattgtattc gatttgttct
     2101 gctttaaaac ctacttcgat ttcattagaa gcgcctaatt caaatatagc acctattttt
     2161 gctccgtaaa caaaaccatc aaaatcttga gataaagata ataaagatgt ttttaaatca
     2221 atacttgttt ttgcatagcc taaatatcca cccgcaacag ctcttactct tttaaaaatt
     2281 tctggagtaa aatcatagcc tagcaagaat ttatgtgtgt taaaatcacc ctctattcta
     2341 agattaggag ttcttataat atcactaaat tcatcagaat aattataagc agcatacaat
     2401 ctatgtaaat cattaaaacg ataacccatt cttaaaccta aaataggaat gctactagat
     2461 aaatcaccat taaaaacagc accggtttta ttatgtttta aatccccttt aactttagtt
     2521 tgaacataag ctgcatccgc acctataaaa aaacctgatt cttccgcagc taaagctgaa
     2581 cttgaaaata gcgcaatacc cacaattaca cttaaaaact ttttattcat aatttttcct
     2641 ttaaattggt tttgtaaaac gcattatatt atattatatt gataattaat atagtattat
     2701 ttttgttact tttttaattt ttttctaaga tatgtaagta ttctatggtt tgagattgtt
     2761 tgcaaattcg agaagaatcg gccttaaaac gcttataaat ttgacttttt aaatcatatt
     2821 ttccatattt ttaaagattt gtttttcaag gaaagcaagc tcaacataaa tcacttaaca
     2881 tctaaaaata ttagactttt tgcctcaacg atagacaact aatatcaaaa tatataactt
     2941 atatttaaaa aaatgtgcaa ttataatata aatttatcta aaaaagaata aaaaatacaa
     3001 agagtaaatt tactctttgt aaaaaagttt caatcaaaag tgattaatca tcaaattttt
     3061 gtcccaaaaa attgccattg cgatcaaaat aaagctccat aaaattattg agcttaacct
     3121 cataaccata ctcttcccaa tccacatcaa caataaaagc acctggatgt agattttgaa
     3181 tttggctgtt gatatttttt ggtaagccat taaaataatc ttgtggtggc atagcttgtt
     3241 gtgggtatgc aggatatgga tgaagtgggg caggtgcgac tgcaggagtt tgagtcgaag
     3301 cagggaccat gttcgcactt gcaagaattg cagagcatgc tagaatagca gggataattt
     3361 ttgttttcat tatctaactc cttaaaatgt tttaacaagt gtaagtttat gttttttgtg
     3421 tgaagcgagc gtgaaagata agataaaaaa tatttagaaa atagctctat aaatttagaa
     3481 tattgaaaaa attttgaagc ttttgcactt taaagctatt ttttataaag ctttacatga
     3541 atgcaaaagc tttatttcat tttggcacta ccatatcact gcgacattct atcactgtgt
     3601 gcacatttcc gcgtggatta aaatccccta ccaccttaat ccattttggc ttgagcttat
     3661 cttttaaggt attataaatt tcattgatgc ttgcttcatg tgaaacattt ctatgcataa
     3721 aagtattgat ataaagtttt atcgctttaa gttcaaccac aaattgatca ggtatatact
     3781 caagataaat cgtcgcaaaa tcaggataac ccgaacgcgg acaacaacac ataaattcag
     3841 gtaaggtgat ttttataata taatcattct tcgcatcatt aggccaaatt tccatatttt
     3901 ctacatcaaa ttctttaatt tctttttcac cataacgcat gagctttcct tattgaaaat
     3961 ttttagaaaa ttatataaaa aattactttt agagcaattg aaaaataaac atttttaaca
     4021 aattgtataa aaaagatcga tattagatta aataaagctt tttatactag aataagacaa
     4081 attttaaaaa ggaaaaaaat gagaaaatca attgcaatta taggcggtag catcgcagga
     4141 cttagcgcgg ctttattttt cgcttcagct aaaaatgaag aacttgactt tgatatcact
     4201 gtttttgatg agggtaaagc agatttaaaa gcagcagcaa tttacaatgt tccttttttc
     4261 ccaaaaggtg caaaagcaga tgaaatttac actcatataa aaacacaaat tgcttctatg
     4321 cttgaggtaa aatatatcga ttcaaaagta gtaagcatta gtggagaaaa aggcgatttt
     4381 actgttaatg atgagcaagg cttgggtata aaagcagatt atatcatcgt agcaacagga
     4441 gcaagtaaaa gtgaaatcaa aggacttgaa gactttgtta tacctcatga acttatgcca
     4501 aagccaaaca aattttgctt caaacatcac gggagacaga ttatcaaaga aggaatttac
     4561 gcagcaggac ttgcttcagg tgttacgact atggtagctt gcgcgatggg aagtgccaat
     4621 gaagcagctt gcgcgatttt aagcgatatc aaaggtgcag taagcgtata tcacgatacc
     4681 cctactacaa gaaattaaat catcaaagca caaaaggtgt gctttgatac acatcataat
     4741 tgagccaatt tgcaaagatg gtgttcgcat ttgaacgcca attgtatttt atattgccct
     4801 ttttatcgta ataattttta gctttttgta tgaaattatc tcttacatat tcttggtgta
     4861 aagtatcttt aaaatactct aaatggccta aaataaaaat attcttttca tctcttaaca
     4921 aagccgagcc aattttttta tttctaagca aaactttcaa tttcccttgt ttttgtagtg
     4981 ctaaaatttg ctcttcatcc atactagaat gtcttgaatg aggcattaaa accttttcat
     5041 ctaaattcgt taaaagtaaa tcaggtgaaa ttttatcatg cttataaatt ccaaaaattt
     5101 tcttatctaa agcgatttta tctacgccat gaaaatgttt taaagcagcc atagcacccc
     5161 aacaaatata catagaactt gttacatttt gctgtaaaaa atcaaaaatt tctaacaatt
     5221 ctttccagta agcaactttt tcaaaatcca tttgttccac aggagctccc gtaacaatag
     5281 caccatcaaa tttgcgtttt ttaacctcat caagaccttt ataaaatttt tctaaatgag
     5341 taaaaggagt gtttttacct acatagctag tagtagctaa aagtgtgata tttacttgca
     5401 aaggagaatt tgcaagtaag cttaaaattt gattttctgt ttcaattttt tttggcataa
     5461 gattgatgat taaaatctct tgcggacgga tatcttgatg ttttgccctc cttgatccca
     5521 tgataaaagc atgttctttt aaaagctcat aagcgggtat attttctgga ataataagtg
     5581 gcattttttc tcctttattt tttaataagc tttattctcc attctgcatc gcctaaaagt
     5641 tcaaaatcaa cgatctcatg tccttcttca gcagcccatt gtgggattgt ttctgtagcc
     5701 tgtgtacaat caaaaagaat ttctaattct tcaccgcttt ttaaagtttg aaccaaattc
     5761 tttgcttcaa cgagtggaaa gggacaaacc tttcctctag tatctaaagt taccatatct
     5821 tatccttata tcttttgtgt tgccttacgc gtaggcaata taattgtata aaaagtagct
     5881 atgtaagcac ctattaagaa aaataccgta gcaacccaac ctttatacga aaaaagcgat
     5941 gtttctacca atccattacc tatggtacag cctccagcaa gagaagctcc aacccccatt
     6001 aaaattcctc ctatgcttgc ataagctaga gtttttttat caggaagacg aaatctaaat
     6061 tcccctgata atttagcacc taaaaaagat ccaagtgcga ttccaagaac caaaaaaact
     6121 ccccaatcaa caaactgaac atcacctgta ctaaggtatt gtacaagatt tgccgaagga
     6181 gttgtaatcc ctaaaccata atttcttcca cttaagcttg aaagaggcca agctaaaatt
     6241 gcgatcaatg caaccaaaac agccgtaaca aaaggatgcc atgatttttc aaacaatatg
     6301 tgtgaaattc cttgctttct aggctttaat cttgcgactt taaggcgtgg cttgcgtaat
     6361 tctctaatca caaaaaagcc aacaaccaaa ctcaaggcaa gcaccaaaat ccaaggagaa
     6421 attcccaagc tttgataaaa agttccatca gaaattttaa aagtatttaa attatcctgc
     6481 aaaggcaaaa gaactccgta ttttacagca cttgcactaa aagcataaaa caataaagct
     6541 gcgatagaac cgatcaagcc ctcccctgct ctataccaag ttcctgtagc acatcctcct
     6601 gctatgacca taccaaagcc aaaaataatc ccaccaataa tcgttgaaag ccaataaaac
     6661 tcttgaggct ttatcgaaat atatcctaaa gaatgaagag cccaaacacc aatactttgc
     6721 aatgcaacga cgataaaaag cgctataaaa attgtaaatt ttttacttaa aaatacatct
     6781 ctataagctc ccacaacgca aaatcgtccc ctttgcaaaa caaagcctaa taacaaacca
     6841 actataattc cacttaacat aaacacgctc tttaactttc tatagcttgt tttaaatccg
     6901 ctatcaaatc atcgctattt tcaagcccta tgcttaaacg cacagtggtt ttcttaatgc
     6961 ctgctttttg aagttcttct tcacttagtt gagaatgagt agtagaagca ggatggataa
     7021 ttaaagattt actatcacct aaatttgcag caagtaagaa aagttgagtt ttatcacaaa
     7081 ttcttctagc atgctcataa tccctagctt caaagcttaa aagtccacta gcgaaatttt
     7141 tatcaaaata ttttttaaat aaattatgat aagcattact tgctaaagta ggataattta
     7201 cacccttgat atcaggatga gaatttaaaa aattcgcaac tttttcagca ttttggctgt
     7261 gtttttctat acgcactgct aaagtttcaa gtccttgtaa aagcaaccaa gcattttgag
     7321 gcgctaaact agctcctaaa tctctaagcc aagtgatgat gattctaatg ctaaaaattg
     7381 gcaaatcaag tgtatttaaa ttcagtccat gataacttgg atcaggagtg ttaaaagttt
     7441 tatatctatc gttattttta agcaagtcgt ttaaatcttt tctttctata agcgctccgc
     7501 ctaaagcact gccttgaccg cttacatatt tacttaaact atgcacgatt atatccactc
     7561 catgtttaaa aggttggagt aagaaaggag tagcaacggt attatcacaa atggtagcga
     7621 ttttatgttt ttttgctatt tgggttattt tttctatatc agctatggca atttgaggat
     7681 ttgaaagact ttcgaaaaaa atcgcttttg tgttttgatc tat
//
LOCUS       DARAII010000082         7716 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.082, whole genome shotgun sequence.
ACCESSION   DARAII010000082 DARAII010000000
VERSION     DARAII010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7716
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.082"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            93..1112
                     /gene="mutY"
                     /locus_tag="SB143_001407"
     CDS             93..1112
                     /gene="mutY"
                     /locus_tag="SB143_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEF9749938.1"
                     /translation="MQKQMIQNLQDKLLLWYDKNGRKNLPWRNLESKDCDERLKDIDR
                     AYGVYISEIMLQQTQVKSVLEKFYFPFLQKFPTLQSLAKANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFEGKLPKKLDELKNLSGIGTYTAGAIACFAYDQKVSFVDGNIRRV
                     LSRLFALENPKMSELERKAKELLNLADAFNHNQALLDIGALICVSKNAKCGICPLYDF
                     CQGKFNTELYPGIKKTSYENANLSLFVFEWDKKFAIQKSQDKLYKGMYNFPFFKKEEG
                     EIFKNMKLLGEFKHHYTKYKLNIKVYHQILKEENKNYQFKSLKELESTALSILSLKAL
                     RLIKL"
     gene            complement(1098..2360)
                     /locus_tag="SB143_001408"
     CDS             complement(1098..2360)
                     /locus_tag="SB143_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9749939.1"
                     /translation="MQELTRAKKIRSIVAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPIVQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVVSVVLMALGSFMIAAL
                     PSKDVVGDFAIILLLLARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMLFFFSIDEMKDYAWRILFVVGGILALGSLLVRKVMNESATQIHKHE
                     DRGTLKALFTSSWKQFLMVLGITAGGSLAFYTITTYTKTFMENSGMDKTLVNNLFLGA
                     LFILMIIQPLFGYIGDKIGHKRSLIIFCILAFVGIYPIFNLISSNAQSNASLVFILVV
                     LLFIILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAIFGGSAPWVALQFKNAGIE
                     NGFFVYIAVLTLLMFIATLCLPKKSELN"
     gene            2530..3387
                     /locus_tag="SB143_001409"
     CDS             2530..3387
                     /locus_tag="SB143_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPASM domain-containing protein"
                     /protein_id="HEF9749940.1"
                     /translation="MKFKKLYIELSDICGLKCDFCPSKKALRGVMSVENFSKLARQIW
                     DKSEIFTFHLLGDPLLLNNLEEYLQIAKNHQMKLEITTSGFYFSPKNSKLLLKYDNIH
                     QINISLMAFLSQSKLSLEQYFKPILEFCKEHLEYKKSSFINLRLWNLDTNFKAPSENL
                     PIYEFLSKEFGIRILTHLAKNRLQRHILLHQNKLFKWPSLKDKPLYTQGKCHALKEQI
                     GILSDGTLVPCCLDTKGDISLGNVFNAEFKSLLESKRIQEIKKAFEENKRIEKLCQSC
                     EFFKTRLSD"
     gene            complement(3384..4190)
                     /locus_tag="SB143_001410"
     CDS             complement(3384..4190)
                     /locus_tag="SB143_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEF9749941.1"
                     /translation="MKKILIIMSLFLTLLNAKERIVVLDPASIETLFMLNAQDQIVGI
                     ANLQHSNIYPEEKTSKITSVGTFSHPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAQRLDEIKSNIQILAKLTDKEEQGKKLLEEFEQGLQELQKNPLNKSGIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSEIARPIISAEYILKQNPDLLILGINADGNI
                     LNANALLKNTKAAQMGQIYHNENTHILLRLSPKIIDRIKEFKTRLENQNF"
     gene            complement(4187..4963)
                     /locus_tag="SB143_001411"
     CDS             complement(4187..4963)
                     /locus_tag="SB143_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9749942.1"
                     /translation="MLKIQNLSFSYHKKELLKNINLELQNKAFIGILGPNGSGKSTLL
                     KLILKNLNISKGEISLFNTNIKNFALKEFAQLCGFVPQNSGLNTPLKVIDVLLMSKFT
                     NLKHAFCDYSKEDILEVEKFAKTLKLENFLERNILSLSGGEFQRVLLARALLKKPKIL
                     FLDEPTSALDLNHAIELLSLCERLIKQNNIAVVAILHDLNLASMFCDKVLFLKEGEIK
                     YFGSTKELFTKEILKEIYNLNCEIVYKDLKPYILALKEKI"
     gene            complement(4963..5949)
                     /locus_tag="SB143_001412"
     CDS             complement(4963..5949)
                     /locus_tag="SB143_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEF9749943.1"
                     /translation="MLNLNMRSKNLVIIGLFLAYIITCIIALCLGDENLSPKELLSYA
                     FGENEILRQIIIDGRLPRIIMAILIGMLLASSGAVTQNVFSNPIADPYIIGIASAATF
                     GSVLAYLLKLPDYYYGILGFICSAIFSLAIFKVSSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGSASWFRIGILILPLIFCLMYFYAHKNELNIILSGDD
                     EARNLGVDAQKLKINLLIVSSLAVSFAVAFTGLIAFVGLIIPHTVRLLLRNYDNALVI
                     PFCTAFGGLFLLICDTLARTLIAPVQIPIGVLTAFFGAPVFLYLALSARRFL"
     gene            complement(5924..>7716)
                     /locus_tag="SB143_001413"
     CDS             complement(5924..>7716)
                     /locus_tag="SB143_001413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEF9749944.1"
                     /translation="NGNAINVLDNSHGVTPLESVNLNNIERIEIIPGGGSVLYGSGTR
                     GGVINIITKKEKSDAFALSLKGSSYDHGNLGGNLGVYGAKKINDYLTFGFDIQGFNRD
                     GYQEGYNEKGYFVNTKAYLNTSDNSDLSLNYNYFESKNTSSGYLTKAQIQSDPTQKGS
                     GDNITQINRPEIALDYHHYFSDLYEIQLGAFWQNQKIRYLKDEIPMMGTIAYQTGSGF
                     EDTLTGINLKNKINYKDDSYFIFGYEFANHDAKRTSIVHYNVNTPTFQMSHTMTTLMD
                     MNKQSHSVFALDSHQFNDIFSISGGARYEYSLYDTHRSYTSKMIMGGTQRPSNPELFD
                     ADDTSNNFAFEITPNFKYSDTGNIYAKYERGFISPTPAQLVNKDQATQKYYTANLDPE
                     IFDTFELGINDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTGGAFWKYYNIDQTRRLG
                     AELNLHQFLFNDSLILKESLSYLDAQISKGVNDGLRIPYVSKIKATAGVEYAWNKNLS
                     SYIDLSYFSRAKDGGVVDENTGKMSRNSWIKDYFLTDIGVNYNYRNLQILAGIRNLFD
                     KQYYTYQDSTNDQYLAGNGRNYYVEFKYAF"
BASE COUNT         2679 a         1228 c         1223 g         2586 t
ORIGIN      
        1 ataaattgat aaaatgattt ttgattttaa ttattaaaat atcactataa tacattataa
       61 atttttatgc aatttttgtt atactctaac ccatgcaaaa acaaatgatt caaaatttac
      121 aagataaatt acttctttgg tatgataaaa atggacgcaa aaatttgccg tggcgcaatt
      181 tagaaagtaa agattgtgat gaaagattaa aagatattga tagagcttat ggagtttata
      241 tcagtgaaat tatgctccag caaactcagg taaaatcagt tttagagaag ttttattttc
      301 cttttttgca aaaatttcct accttacaaa gtttagctaa ggcaaacgaa gatgagcttt
      361 taaaggcttg gcaggggctt gggtattaca ctcgtgctag aaatttaaaa aaagcagctt
      421 tagagtgtgt ggataaattt gaaggcaaat tacccaaaaa acttgatgaa ttaaaaaatt
      481 taagtggtat aggaacttat accgcaggag ccattgcttg ttttgcttat gatcaaaaag
      541 tttcttttgt agatggcaat atacgccgtg tgctttcacg cctttttgcc ttggaaaatc
      601 cgaaaatgag tgagcttgaa agaaaggcta aggagctttt aaatttagca gatgctttta
      661 atcacaacca agccttactt gatataggtg ctttaatatg tgtgagtaaa aatgcaaaat
      721 gtggaatttg ccccttgtat gatttttgcc aaggaaaatt caatacagag ctttatcctg
      781 gaattaaaaa aacatcttat gagaatgcaa acttaagtct ttttgtattt gaatgggata
      841 aaaaatttgc tatacaaaaa agtcaagata agctttataa gggtatgtat aattttcctt
      901 tttttaagaa agaggaaggc gaaattttta aaaatatgaa attgttagga gagtttaaac
      961 atcattatac aaagtataaa ttaaatatta aagtttatca tcaaatttta aaagaggaaa
     1021 ataaaaatta tcaatttaaa agcttaaaag aattagaaag taccgcactt tcgatacttt
     1081 ctttaaaggc tttaagatta attaagctct gattttttag gcaggcacaa agttgctata
     1141 aacataagca gagtaagcac ggcgatataa acaaaaaagc cgttttctat tcctgcattt
     1201 ttaaattgta aagccaccca aggtgcagat cctccaaaga tggcattaga tatcgcataa
     1261 cccaagcctg tgcctaaggc tcttacatgt tcagggaaaa gtttggcttt aaaaattcca
     1321 gccactgaag tataaaaact tagaataata aataaaagca ccactaagat aaacactaaa
     1381 gaagcattgc tttgagcatt gcttgatata agattgaaaa taggataaat tcctacaaaa
     1441 gctaagatac aaaagatgat taaggatcgc ttatgtccta tcttatcgcc gatatatcca
     1501 aaaagcggtt gtataatcat aagtataaat aaagcaccta aaaagagatt attaaccagt
     1561 gttttatcca tacctgaatt ttccataaaa gttttggtat aggtagtgat agtataaaat
     1621 gccaaagatc cacctgcagt gataccaagt accattaaaa attgtttcca agagcttgta
     1681 aataaagctt tgagtgtccc tctatcctca tgtttgtgaa tttgtgtcgc gctttcattc
     1741 atcactttgc gcacaagaag agagccaagg gctaaaattc cacccacaac aaaaagtatt
     1801 ctccaagcat aatctttcat ttcatcaatg ctaaaaaaga aaagcattat actaatacta
     1861 gctactgcta aaagctgtcc gcctatgagg gttacgtatt ggaaagaaga gtaaaaaccc
     1921 cgcttgcctt ctgtggcaag ttcggaaaga taggtcgctg ctatgccgta ttccccacct
     1981 acacttagtc cctgtatgag tcttgcaagt aaaagcaaga taatagcaaa atcccccacc
     2041 acatctttac taggtaaagc tgctatcata aaagagccta aagccattaa aaccacagat
     2101 acaaccatgg attttttacg acccacttta tcagctaaag aaccaaaaag ccaagagcct
     2161 ataggacgca taaaaaagcc cgcagcaaag actccaaaag cattgatttg ctgcacgata
     2221 ggattatcag aggttgaaaa agtatgagca aaataagttg ctgtaaaagc ataaatataa
     2281 aaatcaaacc attctaccaa atttccgcta cttgcagcta caatagaacg gatttttttc
     2341 gctcgagtaa gttcttgcat aaaatttcct tcattttaaa gttttaattt tttcaagtat
     2401 aatgtggatt ttatttaaaa gttttgaaaa tatataaaat aattaaaaaa tatataaaaa
     2461 tatgtataaa atgttactta ttttaatcta ttttttaaaa tattgctaaa aaatactctt
     2521 ggatacataa tgaaatttaa aaaattatac atagaattaa gcgatatttg cggtttaaaa
     2581 tgtgattttt gtccctcaaa aaaagccttg cgtggagtga tgagtgtaga aaatttttcc
     2641 aaacttgcaa ggcaaatttg ggataaaagc gaaattttta cctttcatct tttgggagat
     2701 cctttgcttt taaataattt agaagaatat ctacaaattg ctaaaaatca tcaaatgaaa
     2761 ttagaaatta ccacaagtgg tttttatttt agtcctaaaa attctaaatt gttattaaaa
     2821 tacgacaata tccatcaaat caatatctct ttaatggcct ttttaagtca aagcaaactt
     2881 tctttagagc aatattttaa gcctatttta gagttttgca aagagcattt agagtataaa
     2941 aaatcaagct ttatcaatct tagactttgg aatttagata ctaactttaa agcccctagc
     3001 gaaaatttgc ccatttatga atttttaagt aaagaatttg ggattcgaat tcttacacac
     3061 ttggctaaaa atcgtcttca aaggcatatt ttgcttcatc aaaacaagct ttttaaatgg
     3121 ccaagtttaa aagataagcc cctttatact caaggaaaat gccatgcttt aaaagagcaa
     3181 ataggcattt taagtgatgg cacgctcgtg ccttgttgtt tggatactaa aggcgatata
     3241 tctttgggta atgtttttaa tgctgaattt aagagccttc ttgagtccaa acgcattcaa
     3301 gaaatcaaaa aggcctttga agaaaataag cgtatagaaa agctttgtca aagctgtgaa
     3361 ttttttaaaa caagattgag cgattaaaaa ttttgatttt ctaatcttgt tttaaattct
     3421 ttaattctat ctatgatttt tgggcttaag cgtaacaata tatgagtgtt ttcattgtga
     3481 taaatttgtc ccatttgagc tgcctttgta ttttttaaca aagcattagc atttaaaatg
     3541 ttgccatctg cattaatgcc taagatcaac aaatcaggat tttgttttag gatgtattct
     3601 gctgagatta tagggcgcgc tatttcactt tgaggactta ggtttttaat gcctatgagt
     3661 cttaatatat ccgctattaa agaattatca ttaaaggcca tgagtggatt actagaataa
     3721 aggtaaattc cgcttttatt taagggattt ttttgcaatt cttgtaatcc ttgttcaaat
     3781 tcttctaaaa gttttttgcc ttgctcttct ttgtctgtga gttttgcaag aatttggata
     3841 ttgcttttga tttcatcaag gcgttgggct tttaaattga tacttttgat tccaaagttt
     3901 ttaagccctt cttctaaatt taaagaatac gagcttaata tcactaagct tggctttagg
     3961 gcaactattt tttcaagaga agggtgtgaa aaagttccta cgctagttat ttttgaagtt
     4021 ttttcttcag ggtagatatt tgagtgttgc aaatttgcaa tacctacgat ttgatcttgt
     4081 gcatttagca taaaaagtgt ttctatactt gcaggatcaa gcactacaat gcgttctttg
     4141 gcattaagta gggttaaaaa taaactcata atgattaaaa tttttttcat attttttcct
     4201 ttaaggctaa gatataaggt tttaagtctt tatagacaat ctcgcaattt aaattataaa
     4261 tttcttttag aatttctttg gtaaaaagct cttttgtact tccaaaatac tttatttctc
     4321 cttcttttaa aaacaatacc ttatcacaaa acatagaggc taaatttaaa tcatgcaaaa
     4381 tcgctacaac tgcgatattg ttctgcttta tcaatctttc gcaaaggctt aaaagctcga
     4441 tagcatggtt taaatcaagt gctgaagtgg gttcatctaa aaaaagaatt ttgggttttt
     4501 taagcaaggc tcttgctaaa agcactcttt gaaattctcc accacttaaa gaaagtatat
     4561 ttctttctaa aaagttttcc aattttaaag tttttgcaaa tttttcaact tctaaaatat
     4621 cttctttaga ataatcacaa aaagcatgtt ttaaatttgt aaatttgctc attaaaagca
     4681 catcaataac ttttaagggc gtgtttaaac ccgaattttg aggcacaaaa ccgcaaagtt
     4741 gtgcaaattc tttaagggca aagtttttta tattggtatt aaaaagcgat atttcgccct
     4801 tacttatatt taaatttttt agtataagct ttaaaagtgt gcttttaccc gagccattag
     4861 gccctaaaat acctataaaa gctttatttt gaagctctaa attgatattt tttaacaatt
     4921 cttttttatg atagctaaaa cttaaatttt gtatctttaa tatcataaaa atctcctagc
     4981 acttaaagcc aaatataaaa atacaggagc tccaaagaat gcggttaaaa cccctatagg
     5041 aatttgcacg ggggctatta gagtccttgc tagagtatca caaatgagta aaaaaagccc
     5101 tccaaaagcg gtacaaaaag gaataaccaa agcattgtca taatttctaa gcaagagtct
     5161 tacggtatga gggattataa gtcctacaaa ggctatgagt cctgtaaaag ctaccgcaaa
     5221 agaaactgcc aaagaagaaa ctatcaaaag attgattttt aatttttggg catcaactcc
     5281 taaatttctt gcctcatcat ccccgcttaa aatgatattt aattcatttt tatgcgcgta
     5341 aaaatacata agacaaaaaa tcaaaggcaa aatcaaaatt cctatacgaa accaagaagc
     5401 tgaacctata tttcccataa gccaagcaac tattttaaaa gaatcttccc ctataagata
     5461 ggtaaaaaac gaggtaaaag ctcctagaaa agatgaggca gcaatgccta tgatgagtaa
     5521 agtagctatg gaagcttttg aagatacttt aaagatcgct aatgaaaaaa tagcagaaca
     5581 aataaagcct aaaattccat aataataatc aggcagtttt aacaaatacg ctaaaacaga
     5641 tccaaaggtt gctgctgaag ctatacctat gatataagga tctgctatgg ggtttgaaaa
     5701 tacattttgc gttactgctc cactgctagc taaaagcata ccgattaaaa tagccattat
     5761 aatacgaggc aaacgcccat cgatgatgat ttgacgcaaa atttcatttt caccaaaagc
     5821 ataggagaga agttctttag ggcttaaatt ttcatctcct aagcaaagtg cgatgataca
     5881 ggtgattata taggctaaaa aaagccctat aatcactaga tttttagaac gcatatttaa
     5941 attcaacata gtaatttcta ccatttccgg ctagatattg atcatttgtg ctgtcttgat
     6001 aagtgtaata ttgcttatca aaaagattgc gaatgcctgc tagaatttgt aaatttctat
     6061 aattataatt tacaccaata tcagttaaaa aataatcctt aatccaagaa tttctagaca
     6121 tctttcctgt attttcgtca acaaccccgc catcttttgc tcttgaaaaa tagcttagat
     6181 ctatatagct tgataaattt ttattccaag cgtattctac tccggctgtg gctttgattt
     6241 ttgaaacata aggaattcta agtccgtcat taacaccttt agaaatttga gcatcaagat
     6301 agcttaggct ttctttgagg attaagctat cattgaataa aaattgatga aggtttaatt
     6361 ccgctcctaa acgacgcgtt tggtcgatat tataatattt ccaaaatgct cctcctgtgg
     6421 agtgtggatt tccaagataa gaaatttcat ccttgcttag agtgtaaaat aaagtcaaat
     6481 taaagccata aaaatcccac caaaaatcat taatcccaag ttcgaaagta tcaaaaattt
     6541 caggatctaa attggcagtg taatattttt gagttgcttg atctttgtta acaagttgtg
     6601 caggagttgg agagatgaaa cctctttcgt atttagcata tatatttcca gtatcagaat
     6661 atttgaaatt tggagtgatt tcaaaggcaa agttattgct tgtatcatca gcgtcaaaaa
     6721 gctctggatt acttggtcgt tgtgtaccgc ccattatcat tttacttgtg taacttctgt
     6781 gggtatcata aagactgtat tcgtatcttg caccacctga aatactaaaa atatcattaa
     6841 attgatgaga gtctagagca aaaacagaat ggctttgttt attcatatcc attagagttg
     6901 tcatggtatg actcatttga aatgttggag tgtttacatt ataatgaact atgcttgttc
     6961 ttttggcatc atgatttgca aactcatagc caaagataaa ataagaatca tctttgtaat
     7021 tgattttatt ttttaaattt atacccgtaa gcgtatcttc aaaaccgcta ccggtttgat
     7081 aagctatggt gcccatcatt ggaatttcat cttttagata tcttattttt tgattttgcc
     7141 aaaatgctcc gagttgaatt tcgtataaat cactaaaata atgatgataa tctaaagcaa
     7201 tttcaggtct attgatttga gtgatattat caccacttcc tttttgggtc ggatcacttt
     7261 gaatttgtgc ttttgtaaga tagccactgc ttgtattttt gctttcaaaa taattataat
     7321 ttagggataa atcactatta tcgctagtat ttagataggc ttttgtattg acaaaatagc
     7381 ctttttcatt ataaccctct tgatagccat cgcggttaaa gccttgtata tcaaaaccaa
     7441 atgttagata atcattgatt tttttagccc cataaacgcc taaatttcca cctaaatttc
     7501 catgatcgta actactgcct ttaagactta gagcaaaagc atcggatttt tctttttttg
     7561 taatgatatt aatcacaccc cctctagtgc cacttccata aagcacagag cctccccctg
     7621 gtatgatttc tatgcgttct atattgttta aattgacact ttctaaagga gttacgccat
     7681 gagaattatc aagcacatta atagcatttc cattta
//
LOCUS       DARAII010000083         7582 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.083, whole genome shotgun sequence.
ACCESSION   DARAII010000083 DARAII010000000
VERSION     DARAII010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7582
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.083"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            6..530
                     /locus_tag="SB143_001414"
     CDS             6..530
                     /locus_tag="SB143_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HEF9749945.1"
                     /translation="MLESKKTFWPYGILISIFAIVVACVATIIVASNYPVYEDDFYFD
                     SYQNVENNYNIIQKQQEQFDTLFKVEFQNDKIDLIGKRKIASYTISADSYLAQFKITA
                     LNDQANIQNLKSEILLTRPHTREFDQKLLGQIQDGVLSVSLPQLEKGRWQLKIKLSTD
                     DEITGFFSYELNAQ"
     gene            527..2893
                     /locus_tag="SB143_001415"
     CDS             527..2893
                     /locus_tag="SB143_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEF9749946.1"
                     /translation="MILRIFSSSRKIKEYQEKAKAKNALLDSAFLVSDFLDRVCVINS
                     FKASSYESLLLMQEACLKSKDLEKKLGISAEFFAFLKNNEYLFSFFKELSLEKKSIQD
                     LKNNDYYATYNEHLEILDEVYTNYLLLLKQHNLYDDLSLAQEYKLNLDFLNEYESIYY
                     DLQGFLSKFEEDLLCEISKIKSTIISFKTSKFNLEYLLELDFLKDIHLELDMFYEVNL
                     SQKKILKQEKLSNPNTLVKLKAFELRSLQCAFVMDEISNFVRAGIDPEKIAVITPDES
                     FCELLKLFDKNNMLNFASGVSIKESLFYQKIKALYNGANSDAFIYKIDENYFEQEKMI
                     FDYHNTLLHYLELQFEDFRTRFDQICDLQYFENLIHSFLKDESQELMNLVQKELCFIK
                     DLLKNKSLKLKELMQLFFMQLDQIKLSYVGGGKVTVMGLLESRGLSFDGVVILDFNED
                     FVPKRSINELFLNNEVRKKAGLISYERRENLQRLYYENLMKNAKKLSISFVENEEQAR
                     SRFLDELDFNFFEEKTTPSKAYLNALKLDYQGVELNLNPIKVPVLKHDIFEKELSFSR
                     LNLFLYQKRTYFYRYILELPEARALSDESKAKNQGNFIHKMLELYYKNYSKNNFNLKI
                     FNDLLEQEYPKYSISELELEIFKLKFIQFAENEKEHFKLGYKVIEQEEEHHKALNIQN
                     HTIRLKGIVDRIDKLEDKHFIIDYKSGKVPEKSFQLAFYKALCDENAEAKFYDLNQMQ
                     FVEEKAKSLDELKECLKDLLEQREEEIEFENDKDEYCPYKIIYKKDFR"
     gene            2890..5652
                     /locus_tag="SB143_001416"
     CDS             2890..5652
                     /locus_tag="SB143_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HEF9749947.1"
                     /translation="MKFKPFLALEASAGSGKTFALSVRFVALILQGAKINEILALTFT
                     KKASNEMKKRIIETFLNLEKESKKSECKELCELLGCEEDELIFLRDKKKQEFLRQELK
                     ISTFDSFFSRILRAFALNLGLSSDFDTSEEKLDVRAVFLKLLNRQELKDLAYYKVSLE
                     DNHDFFEELENFYENAYFKECVRIPNPSKASINQAYDDLRVYCLSLDHVKGYKYLCTH
                     FKDEVLQLSQFAKSDLLNLTGAPKYLQELEDSDVKFSQKRKAFIKALDAYAKELEEYK
                     IANLMNLLSHFSKAKDIIQKDKNTLSFSDISRRVLDLIRSDFKDMIYFRLDGYISHLL
                     IDEFQDTSVVQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDLL
                     QTEFKQIQKDQLTINYRSKQILVDFVNKTFQSKIKDYTPQLSLESKKGGFVRVIESQE
                     TKVDKDQAKEIQDKTLEALLEQLKFLKSKNIIYDDICILCWKNNDADMILDFLHEQDI
                     PAFTQSNILLENKACIRVLLEYAKYCIFGDKFYLHFLKEMLGFEPLKLKLDLAKSAVQ
                     NVLYLIKELKLDLNDMALIQFIEYAKSKDDFLKLLFEPCTLKIMSEQNRGINIMTVHK
                     SKGLEFDHVILLDSLSKNNPNNKTIMLEYDIDQGWELHIKDSYRKATQESEYKAFIDK
                     ITKADYEDDINKLYVAFTRAKDNLIIIKRNASFQSGNYPSYLNTMLDIEIQELGEIEI
                     QTNNTHLPQKESFQALMEFEKIPLQDIERKENTSSDEIYFGNAFHFFMQNLKLPQGEN
                     FDILCQKVSGKFRHFLNHDDFEKLFKRIKNLLANAQFQKLIENKKLLKEQALSFQGEI
                     KQLDLLALGEDEAIIIDYKTGLDFNKHKEQVLLYKEAIEKILAKKSTQAFLVYVLEDK
                     VEIIEV"
     gene            complement(5649..6299)
                     /locus_tag="SB143_001417"
     CDS             complement(5649..6299)
                     /locus_tag="SB143_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WG repeat-containing protein"
                     /protein_id="HEF9749948.1"
                     /translation="MYNAYLQSLQYKNLDVAKFCKECGNSDLYDPQAEEKLEQERRKQ
                     EELRRLEEEKRKIAQEEREKSLKQRKEFIAKHKSKIIISMVSFFLIASLSIYQYFYGG
                     KYSRVYISKLEEKCHYDDESSCKMLQTIYKEKCDDGDGKACFAGIFVSGDLIRVKIDG
                     QWSFLDKNGEIIAKPEFDKAGNFSEGLARVALNGKWGFIDKSGKIVIEPIFDDIDY"
     gene            complement(6357..7088)
                     /locus_tag="SB143_001418"
     CDS             complement(6357..7088)
                     /locus_tag="SB143_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEF9749949.1"
                     /translation="MLSLKFKIQEYLQCKNCLKINPEEDAKFCIFCGKGLNHPARQRL
                     DYIYSKNPAIIVALLAKVAKADDKIITKDLSKFISSLLDKIEMFYSKEYSGFRNTYAS
                     IFEYEKNQGRSIHELCTSARFYEKEIDFLICLLLDLIYYDAKMSANENALMENIIVGL
                     GLNLIKFREVKLKYEQIYNFTHEKAQQEPKEDKFTITLEQAYEILNSHPKDDFETIKK
                     NYRKLAKEYHYDNLYSKELPPELLK"
     gene            7281..>7582
                     /gene="rplM"
                     /locus_tag="SB143_001419"
     CDS             7281..>7582
                     /gene="rplM"
                     /locus_tag="SB143_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEF9749950.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKL"
BASE COUNT         2728 a         1033 c         1234 g         2587 t
ORIGIN      
        1 gaaaaatgct tgaaagtaaa aaaacctttt ggccttatgg aattttaatt tcgatttttg
       61 ctattgtggt tgcttgtgtg gcaactatta tagtggcaag caattatcct gtatatgagg
      121 atgattttta ttttgactct taccaaaatg ttgaaaataa ttataatatt atccaaaaac
      181 aacaagagca atttgatacc ttgtttaagg ttgaatttca aaatgataag attgatttga
      241 ttggtaaaag aaagattgca agttatacaa tcagtgcaga ttcttatcta gcgcaattta
      301 aaataacagc cttaaacgat caagcaaata tacaaaattt aaagagtgaa attttactta
      361 caagacctca cacaagagaa tttgatcaaa aacttttagg gcaaattcaa gatggagttt
      421 taagtgtatc cttgcctcag cttgaaaaag gtagatggca actcaaaatc aaacttagca
      481 cagatgatga aataacaggc ttttttagct atgaattaaa tgctcaatga tactaagaat
      541 atttagttcc tcaagaaaga ttaaagaata tcaagaaaaa gcaaaggcca aaaacgcttt
      601 acttgattct gcttttcttg tatcagattt tttagatcga gtatgcgtga taaattcttt
      661 taaagcaagc tcttatgaga gcttgctttt aatgcaagaa gcttgtttaa aaagtaaaga
      721 tttagaaaaa aaactaggta tttcagctga attttttgct tttttgaaaa ataacgaata
      781 ccttttttct ttttttaaag aattaagttt agaaaaaaaa agtatacaag atcttaaaaa
      841 caatgactat tacgcaactt ataatgagca tttagaaatt ttagacgagg tttatacaaa
      901 ttatcttctt ttgcttaagc aacacaattt atacgatgat ttatccttag ctcaagaata
      961 taaacttaat ttagattttt taaacgaata cgaaagtata tattatgatt tacaaggttt
     1021 tttaagcaaa tttgaagagg atttgttgtg tgagatttct aaaatcaaaa gcacaatcat
     1081 aagctttaaa acaagcaaat ttaatcttga atacctacta gaacttgact ttttaaaaga
     1141 tatacacttg gaacttgata tgttttatga agtcaatctt tcacaaaaaa agattttaaa
     1201 acaagaaaaa ctttcaaatc ctaacacttt agtcaagcta aaggcttttg agcttaggtc
     1261 tttacaatgt gcttttgtta tggatgaaat ttctaatttt gtccgagcag gaatagatcc
     1321 tgaaaagata gctgttatca ctcctgatga aagtttttgt gagcttttaa aactttttga
     1381 taaaaacaat atgttaaatt ttgctagtgg agtaagcatt aaagaaagtt tgttttatca
     1441 aaagatcaaa gccttatata atggagcaaa ttcagacgct tttatctata agatagatga
     1501 gaattatttc gaacaagaaa aaatgatttt tgattatcat aatactttgt tgcattattt
     1561 agaacttcaa tttgaagatt ttagaactcg ctttgatcaa atttgtgatt tgcagtattt
     1621 tgaaaattta atccacagtt ttttaaaaga tgaaagtcaa gagcttatga atttggtgca
     1681 aaaagagctt tgttttataa aggacttgct caaaaacaaa tccttaaagc ttaaagaact
     1741 catgcaactt tttttcatgc aattagatca aataaagcta agttatgtgg gtggtggaaa
     1801 agtcactgtt atgggacttt tagaaagcag gggacttagt tttgatggtg ttgtcatact
     1861 tgattttaat gaagattttg ttcctaaaag aagtattaat gagttgtttt taaacaatga
     1921 agtgcgtaaa aaagcagggc ttataagcta tgaaagaaga gagaatttac aaagacttta
     1981 ttatgaaaat ttgatgaaaa atgctaaaaa acttagcatt agttttgtgg agaatgaaga
     2041 gcaagctcga tcgcgttttt tagatgagct tgattttaat ttttttgaag aaaaaaccac
     2101 accttctaaa gcctatttaa atgctttaaa actcgactat caaggcgtag agttaaattt
     2161 aaatcctata aaagtacctg ttttaaaaca cgatattttc gaaaaagaat tatcgtttag
     2221 tcgtttgaat ttatttttat atcaaaaaag aacttatttt tatcgctata ttttagaatt
     2281 acctgaagct agagccttaa gcgatgaaag caaggctaaa aatcaaggaa attttatcca
     2341 taaaatgctc gagctttatt ataagaatta ttctaaaaat aattttaacc taaaaatttt
     2401 caatgatttg ttagagcaag aatatccaaa atacagcatt agcgaacttg agcttgaaat
     2461 ttttaaatta aaatttatac aatttgccga aaatgaaaaa gagcatttta aattaggtta
     2521 taaggtgatt gagcaagaag aggaacatca taaagcttta aatatccaaa atcatacgat
     2581 caggcttaag ggtattgttg atcgtattga taagcttgag gataaacatt ttatcattga
     2641 ttataaaagt ggaaaagtcc ctgaaaaatc ctttcagcta gctttttata aggctttatg
     2701 cgatgaaaat gcggaagcaa aattttatga tttaaatcaa atgcaatttg ttgaagaaaa
     2761 ggccaaaagc ttggatgagc ttaaagaatg tctaaaagat ttgcttgagc aaagagaaga
     2821 agagattgaa tttgaaaacg ataaagatga gtattgccct tataaaatca tctacaaaaa
     2881 ggattttaga tgaaatttaa gcctttttta gccttagaag caagcgcagg aagcggtaaa
     2941 acttttgcct taagtgtgcg ttttgtggct cttattttac aaggagcaaa aataaatgaa
     3001 attttagctc taacttttac caaaaaagca agcaacgaaa tgaaaaaaag gattatcgaa
     3061 acttttttaa atttggaaaa agaaagtaaa aaaagcgagt gtaaagagct ttgtgagctt
     3121 ttagggtgcg aagaagacga gctgatattt ttaagagata agaaaaaaca agagttttta
     3181 agacaagagc ttaagataag cacatttgat tcttttttta gtcgaatttt aagagccttt
     3241 gctttaaatt tgggattaag tagtgatttt gatacaagtg aagaaaagct cgatgttagg
     3301 gctgtttttt taaaattact caaccgccaa gaattaaaag atttagctta ttataaggtg
     3361 agtttagaag ataatcatga tttttttgaa gagcttgaga atttctatga aaatgcgtat
     3421 tttaaagaat gcgtaaggat tcctaatcct tcaaaagctt ctatcaatca agcctatgat
     3481 gatttaaggg tttattgttt aagcttagat catgtcaaag gatataaata tttatgcacg
     3541 cattttaaag atgaagtgct tcaattaagc caatttgcaa agtcagatct tttgaattta
     3601 acaggtgctc caaaatactt gcaagaatta gaagatagcg atgttaaatt cagccaaaaa
     3661 agaaaagcat tcatcaaagc tttagatgct tatgctaaag agcttgaaga atataagatc
     3721 gcaaatttaa tgaatctttt aagccatttt agcaaggcta aagatatcat ccaaaaagat
     3781 aaaaatactt taagctttag cgatattagc cgaagggtgc tagatcttat cagaagtgat
     3841 tttaaagata tgatttattt tcgcttggat ggctatattt ctcatttatt aatcgatgaa
     3901 tttcaagata ctagcgtggt gcagtatcaa attttaagac ctttgatcgc cgagcttgtt
     3961 tcgggtgagg gcgtgaagaa aaatagaacc tttttttatg tgggcgataa aaaacaaagt
     4021 atctatcgtt ttagaaaggg caaaaaagaa ctttttgatt tgttgcaaac tgaatttaaa
     4081 caaattcaaa aagatcaact cacgatcaat taccgctcta aacaaatttt ggttgatttt
     4141 gtcaataaaa cctttcaaag caagattaaa gactacaccc ctcaactttc tttagaaagc
     4201 aaaaaaggtg gctttgtgcg tgtgatcgag tcgcaagaaa caaaggtgga taaagatcaa
     4261 gctaaagaaa ttcaagataa aaccctagaa gctttgctag agcagcttaa atttttaaaa
     4321 agtaaaaata tcatttatga tgatatttgc attttgtgtt ggaaaaataa cgatgcggat
     4381 atgattttgg attttttaca cgagcaagat atcccagcct ttactcaaag taatatttta
     4441 ctcgaaaata aagcctgcat aagagtgctt ttagaatacg ctaaatactg catttttggc
     4501 gataagtttt acttgcattt tttaaaagaa atgttaggtt ttgagccttt gaaattaaag
     4561 cttgatttgg caaaaagtgc tgtgcaaaat gtgctttatt tgatcaaaga attaaaactt
     4621 gatcttaatg atatggcttt gattcagttt atagaatacg ctaaaagcaa ggatgatttt
     4681 ttaaagcttt tgtttgagcc ttgcacttta aaaattatga gtgagcaaaa tagaggtata
     4741 aatatcatga ctgtgcacaa atccaagggc ttggaatttg atcatgtgat tttacttgat
     4801 agtctttcaa aaaacaatcc caacaataaa accataatgc ttgagtacga tatcgatcaa
     4861 ggttgggagc ttcacataaa agatagctac cgaaaagcga ctcaagagag cgaatataaa
     4921 gcttttatag ataaaatcac aaaagcagat tacgaagatg atatcaataa gctttatgtt
     4981 gcttttacaa gggcaaaaga caatcttatc atcatcaaaa gaaatgcctc gtttcaaagt
     5041 ggaaattatc caagttattt aaacactatg cttgatattg aaattcaaga attaggcgag
     5101 atagaaattc aaaccaataa cacccactta cctcaaaaag aaagctttca agccttaatg
     5161 gaatttgaaa aaattccttt acaggatata gaaagaaaag aaaatacaag ctctgatgaa
     5221 atttattttg gaaatgcttt tcactttttt atgcagaatt taaagcttcc acaaggagaa
     5281 aattttgaca ttctttgtca gaaggtgagt ggtaaattta gacatttttt aaatcacgat
     5341 gattttgaaa agctttttaa aaggataaaa aatttacttg ctaatgccca atttcaaaaa
     5401 ctcatcgaaa ataaaaaatt actcaaagag caagctttga gttttcaagg tgagatcaaa
     5461 cagcttgatt tacttgcttt aggcgaggat gaagctatca ttatagacta taaaacgggt
     5521 ttggatttca acaagcataa agagcaggtt ttgctttata aagaagctat agagaagatt
     5581 ttggctaaga aatcaactca agctttttta gtctatgttt tagaagataa ggtggagata
     5641 atagaggttt aatagtctat atcatcaaat ataggctcga ttacaatttt tccactttta
     5701 tctataaaac cccattttcc atttaacgca actcttgcca atccttcgct aaaattccca
     5761 gccttatcaa attcaggctt tgctataatt tccccgtttt tatctaagaa gctccactgt
     5821 ccatcgattt ttactcttat taaatcaccg cttacaaaga taccagcaaa acaagcttta
     5881 ccatctccat catcgcattt ttctttatag atagtttgga gcattttaca gctactttca
     5941 tcatcgtagt ggcatttttc ctcaagtttg cttatataga ctctgctgta ttttccacca
     6001 taaaaatact gatatatgct tagcgaagct atcaaaaaga aactcaccat actaattatg
     6061 attttgcttt tatgttttgc gataaattct tttctttgtt tgagactttt ttctctttct
     6121 tcttgagcta tttttctttt ctcttcttct agtcttctta attcttcttg tttccttctt
     6181 tcttgttcta gtttttcttc tgcttgcgga tcgtataaat cactatttcc acactctttg
     6241 cagaatttag ctacatctaa atttttgtat tgcaatgatt gcaaataagc attatacatc
     6301 ccttgtttct ttgatgattt cataagctaa attgatcttt ttcatcatct cttgagctat
     6361 tttaaaagtt caggtggaag ttctttggag tagagattgt catagtggta ctctttggct
     6421 aattttctat aatttttctt gatagtttca aaatcatcct taggatgaga atttaaaatt
     6481 tcataagctt gttcgagagt gattgtaaat ttgtcttctt ttggttcttg ctgtgctttt
     6541 tcatgagtaa aattataaat ttgttcatat tttagcttta cttctctaaa ttttataagg
     6601 tttaatccaa gtcctacgat gatattttcc ataagagcat tttcatttgc gctcattttt
     6661 gcatcataat atatcaaatc aagcagtaaa catatgagaa aatcgatttc tttctcgtaa
     6721 aatcttgcac tagtgcaaag ttcatggatg cttctgcctt gatttttttc atactcaaaa
     6781 atgcttgcat aagtatttct aaatccactg tattctttag aataaaacat ctctatctta
     6841 tcgagtaaag aagatataaa tttggataaa tcttttgtga tgattttatc atctgctttt
     6901 gcaacttttg ccaaaagcgc tactatgata gcgggatttt tactgtaaat ataatcaagc
     6961 ctttgtcttg cgggatgatt taaccctttt ccacaaaata tacaaaattt agcatcttct
     7021 tcagggttta tcttaagaca atttttacac tgaagatact cttgaatttt aaattttaaa
     7081 gaaagcaaaa taaaacctta tttttaatat aataaaaagt aattttaaca aggatatgct
     7141 taaaatgtaa tattttatct gtgctagcga gataaaaata aaaaggctac taaactttaa
     7201 atattcttaa attaagtatt atttaagtaa aaataattat aatctcattt tcaaaaaatt
     7261 tttggcaaag gtaaagaatt atgacaaaga taacaaagcc aaacgaagtt aaacgagaat
     7321 ggattgtttt agacgcagaa ggcaaacgct ttggtcgtct tttaactgaa gtagcaacaa
     7381 ttttaagagg taaaaacaaa ccttgcttta ctcctaatgt tgattgtggt gattatgtga
     7441 ttatcatcaa tgcttcaaaa gctgtattta caggtgcaaa taaagcagaa gataagcttt
     7501 atcacagaca ttcaggatat tttggaagcg taaaaagcga aaaattcgga gatttacttg
     7561 aaaaaaatcc tgcaaaatta ta
//
LOCUS       DARAII010000084         7552 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.084, whole genome shotgun sequence.
ACCESSION   DARAII010000084 DARAII010000000
VERSION     DARAII010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7552
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.084"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..215)
                     /locus_tag="SB143_001420"
     CDS             complement(<1..215)
                     /locus_tag="SB143_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749951.1"
                     /translation="MKKIKKIIQIGMISGLAAVAGGALVGCGSSNDNSDTLNQAANTQ
                     GAFVIIEEIAPGQYKIKDQFPSDETRVV"
     gene            complement(418..630)
                     /locus_tag="SB143_001421"
     CDS             complement(418..630)
                     /locus_tag="SB143_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEF9749952.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            776..2152
                     /gene="ccoG"
                     /locus_tag="SB143_001422"
     CDS             776..2152
                     /gene="ccoG"
                     /locus_tag="SB143_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEF9749953.1"
                     /translation="MENHITNYTKKRYFVYLIATIVIFCLPFITINGNHFFLLSFDHS
                     KLNLFFISFSTQELYLMPFLLIFLFLFIFFITTLGGRVWCAWSCPQTIFRVIYRDIIQ
                     TKLLKIRKNINNKQKEYEGYYFKKIIGVILFYFISLVAVSNLLWYFVPPEDFFAYIQN
                     PGEHLLLLGVLFCASLFLTLDITYLAEKFCIYVCPYARVQSVMFDRDTMQVIYDEKRG
                     GVIYDGHTKLYKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSVKAIETRKKVNYLRFRTIAYFIVLVIALIALMIMGSKKENMLLNIN
                     RSSELYQISHTNNGLEISNAYTFLFQNTDSKAHEYYFEASLEGIDNGIEIIRPSKAFT
                     LKAGEQAKKIVVIKATKKLADNDQKDVIFPLHIKAYAKDNDEIVIFRESIFVYPKSTI
                     LKGYNESK"
     gene            2139..2774
                     /gene="cmeR"
                     /locus_tag="SB143_001423"
     CDS             2139..2774
                     /gene="cmeR"
                     /locus_tag="SB143_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEF9749954.1"
                     /translation="MNPNKTPSKKVLARREKIKNVAFDLFLTKGFQETSLSDIIKLSG
                     GSYSNIYDSFNSKEGLFFEILDDVCKKHFDLIASQTQTIKDKNLKEFLTSFGLTFVDI
                     FNQVQTVAFGKIIFSQVYDKHKHVENWIENNQKIFSYNILIELFKKQDSSYISNNAQK
                     LAMLFCAMLREPYHSLNVLADTPLMNKQEQKEHVEFIVNIFLKGIENKTSI"
     gene            2882..3985
                     /locus_tag="SB143_001424"
     CDS             2882..3985
                     /locus_tag="SB143_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEF9749955.1"
                     /translation="MNLFQKNTLLLLSALFLFSACSKEEAPQKQTPPQSVSTMSAKAE
                     NLPLNFTYPAKLVSDYDVIIKPQVSGVIVEKLFKAGDLIKKGQTLFIIEQDKFKASVN
                     SAYGKALMARANFDNASKDYNRSKTLYNKGAISQKEYDSALANFNNTKANLTSARADL
                     ENARIDLAYTEIKAPFDGIVGDALINIGDYVSSSSTELVRITNLNPIYADFYISDTDK
                     LNIVRNTQDGKWDLSNIYADLNLNGEVVKGKLYFIDSVIDANSGTVKAKAIFDNNDST
                     LLPGAFATITSNGFIQKNGFKIPQIAIKQDQNEVYVFLLKEGKVAKAPVHISYQDNEY
                     AIIDKGLQNGDKIILDNFKKIRLGSEVKEVGAQ"
     gene            3985..7107
                     /gene="cmeB"
                     /locus_tag="SB143_001425"
     CDS             3985..7107
                     /gene="cmeB"
                     /locus_tag="SB143_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEF9749956.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLVNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIATTVANPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSNGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYIIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYLLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHEDEKISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFIPVSFISGFVGEIQKQFALTLAISVTISGFVALTLTPSLCALFLRRNESKPF
                     YIVQKFNDFFDWSTSIFSAGVAYMLKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDQIQEDVNKLVAAANQREELYGVRTTLDTSFPQYKLIIDRDKLKHFNLNMQDV
                     FSTMNATIGTYYVNDFTMLGKNFQVNIRAKGDFINTQNALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNIFPAAQIQGQPAPGYTSGQAIEAISQVAQETLSDDYSIAWSG
                     SAYQEVSSKGTGSYAFALGMVFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFTNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKKIFDAAIEAAKLRFRPIVM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            7100..>7552
                     /gene="cmeC"
                     /locus_tag="SB143_001426"
     CDS             7100..>7552
                     /gene="cmeC"
                     /locus_tag="SB143_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEF9749957.1"
                     /translation="MNKIISISVIASLSLFISACSLSPNLNIPEANYSLDNKLGALSW
                     EKENNHTLSKEWWKEFDDEKLNHVVDLALQNNNDLKLAFIHMEQAAAQLGIDFSDLLP
                     KLDGSASANRAKTPTNAPSNRTGGVSYGNDFKMGLDLSYEIDLWGRYRD"
BASE COUNT         2581 a         1161 c         1246 g         2564 t
ORIGIN      
        1 acaactctag tttcatcact tggaaattga tctttgattt tatattgacc tggggcgatt
       61 tcttcaatga taacaaaggc tccttgagtg tttgctgctt gatttaaagt atcactatta
      121 tcattgctac ttccacatcc taccaaagct ccacctgcaa cagctgcaag gccgcttatc
      181 ataccgattt gaataatttt tttaattttt ttcatagtct tgatcctcaa atgagattta
      241 gaatttattt tttgataaaa ttctaacaaa aaataatcaa ttaaatctta caaaaatgaa
      301 aatattttaa agaaataaaa tgcaatctta atatatataa aataaaacta ggattttaaa
      361 aaaggtaatt ttgcaaagaa atcttaaatt aagaaaaaag ccctttcggg ctttgggtta
      421 aagtcttgac tcgtagcgtc taagcatata aagtctttta agcatttttt tgcgagctga
      481 aattttttgt tttttacgaa tttcagtcat aggctcaaaa aatcttctcg ctcttacttc
      541 agtaacaact agatttctat ctacttgttt tttgaactta cgatacgctt cgtcaaaaga
      601 ctcgttagga tgtaccttaa ttcctggcac tatcctcacc acctttctgt gtaaattttt
      661 gttgtgaatt atgattatag aatatttctt attaatccaa acttagaaag catttaaaaa
      721 ttgttttagt tttttgggct ataatcgtaa ttactaattt tttacgaggt ttttcatgga
      781 aaatcacatc accaactata ctaaaaagcg ttattttgta tatctaattg caacaattgt
      841 aatattttgt ttacctttta ttacaattaa tggcaaccat ttctttttat tgagctttga
      901 tcattctaag ttgaatctat tttttatttc attttcaact caagaattat atcttatgcc
      961 ttttttgctt atttttcttt ttttatttat attttttata accactttag gaggaagagt
     1021 ttggtgtgct tggagctgtc ctcaaactat ttttagagtg atttatagag atattatcca
     1081 gactaaactt ttaaaaattc gtaaaaatat taacaataaa caaaaagaat atgaaggata
     1141 ttattttaaa aaaatcatag gggtgatttt attttatttc atatctttag tcgctgtaag
     1201 taatttgctt tggtattttg ttccgcctga agattttttt gcttatatac aaaatccagg
     1261 agaacactta cttttattgg gtgttttatt ttgcgcaagt ttgtttttaa ctttagatat
     1321 tacctattta gcagaaaaat tttgtattta tgtatgtcct tacgcaagag ttcaatctgt
     1381 aatgtttgac cgcgatacca tgcaagttat ttatgatgaa aaacgcgggg gagtgattta
     1441 tgatggacat accaaacttt acaaaaaacc gcctgagggt gaatgtatag gttgtgaagc
     1501 ctgtgtaagc atttgtccta ctcatataga tatacgcaag ggtatgcaac ttgaatgtat
     1561 caattgttta gaatgtgctg atgcctgttc taaagtgcaa agcaaattta atagaccaag
     1621 tttgattaat tggaccagtg taaaggccat agaaacacgc aaaaaagtaa attatctccg
     1681 ctttagaacc attgcttatt ttattgttct tgtgattgct ttaattgctt taatgattat
     1741 gggtagtaaa aaagaaaata tgcttttaaa tatcaatcgt agcagtgaac tttatcaaat
     1801 ttcgcatact aataatggtt tagaaatttc aaatgcttat acttttttgt ttcaaaatac
     1861 tgattctaaa gctcatgaat attattttga agctagccta gaaggcattg ataatggcat
     1921 agaaatcatt cgtccaagta aagcttttac attaaaagca ggagagcaag ctaagaaaat
     1981 tgttgtaata aaagctacta aaaagctagc agataatgat caaaaagatg tgatttttcc
     2041 acttcacatc aaggcctatg caaaagataa tgatgagatt gtcattttta gagaaagtat
     2101 ttttgtttat cccaaaagca caattttaaa ggggtataat gaatccaaat aaaacacctt
     2161 ctaaaaaagt tttagcaaga agagaaaaga ttaaaaatgt tgcttttgat ctatttttaa
     2221 ccaagggctt tcaagaaacc agtttaagcg atattatcaa actatcgggc ggttcgtatt
     2281 ctaatattta tgatagtttt aatagtaaag aaggtttatt ttttgaaatt ttagatgatg
     2341 tttgcaaaaa acattttgac ctaatagcct ctcaaactca aactattaaa gataaaaatt
     2401 taaaagaatt tttaacctct tttggactta cttttgttga tattttcaat caagtccaaa
     2461 ccgtcgcctt tggcaaaatt attttctctc aagtttatga taaacataag catgttgaaa
     2521 attggattga aaacaatcag aaaattttct cctataacat acttatagaa ctttttaaaa
     2581 agcaagatag tagctatatt tcaaataatg cccaaaaact tgccatgctt ttttgcgcca
     2641 tgttaagaga accttatcat agtttaaatg ttttagccga tactccttta atgaacaaac
     2701 aagaacaaaa agaacatgtg gaatttattg tcaatatatt tttaaaagga attgaaaata
     2761 aaacctcaat ttaattaagt aaatataaaa attattaacc aaatttgagc tataatatgt
     2821 cttaaaaatt gtgtaataaa tattacaata tatttaaatt aaaaatttta aggcaaaaat
     2881 catgaatttg tttcaaaaaa ataccctttt actcttaagt gctttatttt tattttctgc
     2941 ttgtagcaaa gaagaagcac ctcaaaaaca aacaccccct caatccgtta gtacaatgag
     3001 cgctaaagcc gaaaatttac cgcttaactt tacttatcct gcaaaacttg ttagtgatta
     3061 tgatgttatc atcaaacctc aagtaagcgg tgttatcgtg gagaaacttt tcaaagcggg
     3121 tgatttaatt aaaaaaggac aaacactttt cattatcgaa caagataaat ttaaagcaag
     3181 tgtaaattca gcttatggaa aagctttaat ggctagagca aattttgaca atgccagcaa
     3241 agattataac cgttcaaaaa ctctttataa taaaggagca atctctcaaa aagaatatga
     3301 tagcgcctta gcaaatttta acaacacaaa agcaaatctc accagtgcta gagcagactt
     3361 agaaaatgca cgcattgatt tagcttatac tgaaattaaa gctccttttg atggtattgt
     3421 aggagatgct ttgattaata taggagatta tgttagctcc tcttcaactg aactcgtaag
     3481 aattacaaac ctcaatccaa tctatgctga tttttacatt tcagatacgg ataaactcaa
     3541 tatcgttcgc aatactcaag atggaaaatg ggatttaagc aatatctatg cagatttaaa
     3601 tcttaatgga gaagtagtta aaggcaagct ttattttata gattcagtca ttgatgcaaa
     3661 tagcgggaca gtaaaagcta aagcaatttt tgacaataat gactctactc ttttaccagg
     3721 tgcttttgca acgattactt caaatggttt tattcaaaag aatggattta aaattcctca
     3781 aattgcaatc aagcaagacc aaaatgaggt ttatgttttt ctcttaaaag aaggcaaggt
     3841 tgctaaagct cctgtgcata taagctatca agataatgaa tatgctatta ttgataaagg
     3901 actacaaaat ggagataaaa tcattttgga taactttaaa aaaattagac taggtagcga
     3961 agttaaagaa gttggagcac aataatgttt tctaaatttt ttatcgaaag acctgttttt
     4021 gcttccgttg tagccattat catctctttg gctggagcta tcggacttgt aaatttacct
     4081 atagagcagt atccatcttt aacccctcct acggttaaag taagtgcaac ctacacgggt
     4141 gcagatgctc aaaccattgc cacaacagtt gcaaacccta tcgaagatgc aatcaatggc
     4201 gcagataata tgatttacat ggattcaact tcaagttctt caggaactat gagtttgact
     4261 gtttattttg atatcggtac agatcctgat caagccacca tagatgttaa taatagaatt
     4321 tcagccgcaa ctgcaaaaat gccagatgca gttaaaaaac ttggagtaac agttagaaaa
     4381 acttcctcaa caacacttgc tgcaatttct atgtattcaa gcaatggttc aatgagtgca
     4441 gtagatgtat ataactatat cactttaaat gttttagatg agttaaaaag ggttccagga
     4501 gttggagatg caaacgctat aggaaatcgt aattattctt taagaatttg gctcaagcct
     4561 gatttattaa ataaatttgg aatcacagct actgatgtaa tttctgcggt taatgaccaa
     4621 aatgcccaat acgccacagg taaaattggc gaagaacctg taacccaaaa atccccttat
     4681 gtttattcaa tcactatgca aggaagacta caaaatccta gtgaatttga aaacattatt
     4741 ttaagaacaa ataatgatgg atcattttta agacttaaag atgtagctga tgtggaaata
     4801 ggatcacaac aatacagctc acaaggacga ttaaatggca atgatgcagt tccaattatg
     4861 atcaatcttc aatcaggggc aaacgcattg catacagcag aacttgttca agctaaaatg
     4921 caagaacttt caaaaaattt tccaaaaggt ttaacatata taattcctta cgatacaaca
     4981 aaatttgtaa tagaatcaat caaagaagtt gttaaaactt ttgttgaagc tctaatttta
     5041 gttatcattg ttatgtatat gttcttaaag aatttccgtg caacacttat tcctatgata
     5101 gctgtacctg tttcattgtt aggaactttt gcaggacttt atttgttagg atttagtata
     5161 aatcttttga cattatttgc cctaatacta gccataggta tagtcgtgga tgatgctatt
     5221 attgtggttg aaaatataga taggatttta cacgaagatg aaaagatcag cgttaaagat
     5281 gctgccatcc aagcaatgca agaagtaagt tcacctgtaa tttcaattgt tcttgtgctt
     5341 tgtgctgttt ttatacctgt gtcttttatt tcaggctttg tgggagaaat tcaaaaacaa
     5401 tttgcgctca ctttggctat atctgtaacc atatcaggtt ttgtagctct tactttaaca
     5461 ccttctttat gtgcactctt tttaagacgc aatgaaagca agccttttta tatcgttcaa
     5521 aaatttaatg atttctttga ctggagcact tctatattta gtgcaggcgt tgcttatatg
     5581 cttaaaagaa ccattcgttt tgttttaatt ttttgtatta tgcttggggc aattttttat
     5641 ctctataaag ctgtaccaag ctctttagtt cctgaagaag atcaaggttt gatgattagc
     5701 attattaatc ttccttcagc ttcagcactc catagaacaa tctcagaagt tgatcacata
     5761 agccaagaag ttttaaaaac taatggagtt aaagatgcaa tggctatgat aggatttgat
     5821 ctttttacaa gttcactcaa agaaaatgcc gctgcaatgt ttataggctt gaaagattgg
     5881 aaagatagaa atgtgagtgc tgatgaaatc gccatggagc ttaataaaaa atttgctttt
     5941 gatcgcaatg cttcaagtat atttataggc ctacctccta tacctggatt aagtatcaca
     6001 ggcggttttg aaatgtatgt tcaaaacaaa agcggaaaaa gctacgatca aattcaagaa
     6061 gatgtaaata aacttgtagc agcagccaat caaagagagg aattatatgg ggttcgaact
     6121 actcttgata cgagctttcc tcaatataaa ctcatcattg atagagataa actaaagcat
     6181 tttaatttaa atatgcaaga tgttttcagt acaatgaatg caaccattgg aacatattat
     6241 gttaatgatt ttactatgct tggtaaaaat tttcaagtca atattcgcgc aaaaggagat
     6301 tttataaata cccaaaatgc attgaaaaat atttttgtgc gctcaaatga tggaaaaatg
     6361 ataccacttg actctttctt aactctacaa agaagttcag ggccagatga tgtaaaacgt
     6421 tttaatattt tcccagcagc acaaatacaa ggacaacctg ctccaggata cacttcagga
     6481 caagccatag aagcgatttc ccaagtagca caagaaactt taagtgatga ttactctata
     6541 gcttggagtg gttcagccta tcaagaagtt tcaagcaagg gaacagggag ctatgccttt
     6601 gctttgggta tggtgtttgt attcttaatc ctagcagcac aatatgaaag atggcttata
     6661 cctttagctg ttgttacagc tgtacctttt gccgtttttg gttcgttttt acttgtatac
     6721 ttaagaggat ttactaatga tatatatttt caaaccggac tcttactttt aattggactt
     6781 tcagctaaga atgctatttt gatcgttgaa tttgctatgg aagaacgctt taagaaaggt
     6841 aagaaaatat ttgatgcagc tatcgaagct gcaaaacttc gctttaggcc gatagttatg
     6901 acttctttag cttttacttt tggggtttta ccaatgattt ttgcaactgg agcaggaagt
     6961 gcttcaagac attctttagg gacagggctt attggtggaa tgatagctgc ttctacttta
     7021 gctatattct ttgtaccttt atttttctat cttttagaaa atttcaacga atggctagat
     7081 aagaaaaggg gtaaagttca tgaataaaat aatttcaata agtgttatag caagcttaag
     7141 cctttttatt tcagcttgtt ctttaagtcc aaatttaaat atcccagaag caaattatag
     7201 tcttgataat aaactgggcg ccctatcttg ggaaaaagaa aacaatcata ctctttctaa
     7261 agaatggtgg aaagaatttg atgatgagaa attaaatcac gtagttgatt tagctcttca
     7321 gaacaataat gatttaaaac ttgcttttat tcatatggaa caagctgctg cccaattagg
     7381 catagatttt agtgatttat taccaaaatt agatggtagc gctagtgcaa atcgtgcaaa
     7441 aacacctaca aatgctccaa gcaaccgcac tgggggagta agctatggca atgattttaa
     7501 aatgggactg gatttaagct atgaaattga tctttgggga agataccgcg at
//
LOCUS       DARAII010000085         7497 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.085, whole genome shotgun sequence.
ACCESSION   DARAII010000085 DARAII010000000
VERSION     DARAII010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7497
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.085"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..836
                     /gene="legG"
                     /locus_tag="SB143_001427"
     CDS             <1..836
                     /gene="legG"
                     /locus_tag="SB143_001427"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEF9749958.1"
                     /translation="MLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHF
                     VSHEIYKKRLLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLIT
                     YHPLTLNVKNTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHK
                     AKLFDNLGSQKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIID
                     CEINDLDQAFEKLESKEFKQNLKNFKNPYDNDKNPNKFIKTCLKNANLDTILHKNFID
                     L"
     gene            845..1870
                     /locus_tag="SB143_001428"
     CDS             845..1870
                     /locus_tag="SB143_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEF9749959.1"
                     /translation="MDINKLKLTPDSSIEEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSVSSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIVQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLALQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            1867..2772
                     /gene="ptmF"
                     /locus_tag="SB143_001429"
     CDS             1867..2772
                     /gene="ptmF"
                     /locus_tag="SB143_001429"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HEF9749960.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLKYEVSLLSLSAKKEEFEKTQIY
                     RSLKECHLNEFDLFIIANITTEHFNTLKALNELVKDKIILVEKPLFEKSQNFTSLKNH
                     IYVAYLLRFHPVIVALKRLLKGEKIYFASLICNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFGNLELIYSQNAKISELDITSDDFAFLVLKNSQKAKIHIELDYF
                     SKFNKREMTIHTLEKSFKADLINNKIEIYHKDQSQKILNFENDTIKTLQNLHHAVFEK
                     DKELCDLKQALKVLEICDKVRKKNG"
     gene            2765..3472
                     /gene="legF"
                     /locus_tag="SB143_001430"
                     /gene_synonym="ptmB"
     CDS             2765..3472
                     /gene="legF"
                     /locus_tag="SB143_001430"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEF9749961.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDRAAKLPVMRDALLRSEEHFKTRFE
                     TLIDLDTSAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            3472..4242
                     /gene="ptmA"
                     /locus_tag="SB143_001431"
     CDS             3472..4242
                     /gene="ptmA"
                     /locus_tag="SB143_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HEF9749962.1"
                     /translation="MLENKIIFVTGACGRIGKALCKKILLSKGIPILADINKECLNKL
                     QENLETNFKTKLLSLELDITKQESLQIALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMGTWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            4242..6182
                     /locus_tag="SB143_001432"
     CDS             4242..6182
                     /locus_tag="SB143_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9749963.1"
                     /translation="MTFTPTQKELFNKNIEALSNILLKESLKEIKSSKFELILGKDNL
                     DINLKDTSDNTFIYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNH
                     QHIVVFEKDIEIIWIMFHILDFSNELQNSRLMVLQTSSLDIEFFSNFCSSKPFFQFSR
                     IYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSHGNDPLDALQGIEQFVYNLPQMI
                     THPSYKELLSKRKNLSDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSAYPILAKHD
                     IKPDYVCMLERSEFTAEFFNHDFGEFDREVCFIIKSVVHPNAINYLTKKTDNFTLVST
                     YASFINYLKLDHFGYFNMGFSVAHMACYLSLHLKHKNIIFIGQDLAYAKNGNSHPDDY
                     QNSATYESKAHEPILTKAYGGKGEVKTHHVWLMFKQNLEQDIEKIQKYLDTKVYNCTE
                     GGARIKGAIEKPFLWACENLLDKDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHC
                     KDFNDNFIKVYDKIKNSFTSLQNSQKNEIFIQEIIQDIDKTKTQIDELYNTQKDLIQI
                     LGPLLTQFELNLARIYVLNPKTKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKN
                     ILPLEEKLKERKLDKWMERVRK"
     gene            6179..>7497
                     /locus_tag="SB143_001433"
     CDS             6179..>7497
                     /locus_tag="SB143_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9749964.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     NDFYQQFYSTQIQNINTQLIEMIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVKNAIIVSTGPSLIKQLPLLKKYANKATIFCADSAYVILGKYGIKPDYV
                     CMLERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRTYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELAGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITTY"
BASE COUNT         2877 a         1061 c         1155 g         2404 t
ORIGIN      
        1 aaatgcttag cgtagcaagt gtatgtctat tgatgcacat acctttagtg catttatgtg
       61 gcggggagct tactttaggg gctattgatg atagtataag acacagcatt tcaaaaatgt
      121 cacatttaca ttttgtaagt catgaaattt ataaaaaaag gcttttgcaa cttggagaag
      181 aagaaaaaag ggtttttaat ataggatctt tagcttctac tatcataaaa aatatgaatt
      241 ttttaaacaa aaaagattta gaaaaagcct tagaaatgaa actagataaa gaactttact
      301 taatcactta tcatccttta accttaaatg taaaaaatac tcaaaaagag attaaaacct
      361 tacttaaaaa acttgacacc cttaaaaacg caagtttgat ttttaccaaa gcaaatgccg
      421 atgaaaacgg acttttaatc aatgaaattt tgcaaaatta ctgccaaaaa aactcacaca
      481 aggctaaact ttttgataat cttggctcac aaaaatacct aagtcttatg aaaatagcca
      541 aagccatgat aggcaattct tcaagcggta ttagtgaaag tccttttttt aaaactcctt
      601 gcattaatat aggcgataga caaaaagggc gtttaagaac tcaaaatatc attgattgtg
      661 aaattaatga tcttgatcaa gcttttgaaa aattagaaag caaagaattt aaacaaaatt
      721 taaaaaattt taaaaaccct tatgataatg ataaaaatcc caataaattc ataaaaactt
      781 gcctaaaaaa tgcaaattta gatacaattt tacataaaaa tttcatcgat ttataaggct
      841 tagtgtggat ataaacaaac tcaaactcac ccctgattca agcatagaag aagctttaaa
      901 aatagtcggg caagaacgcg ttagactagg cattatagtt gataaaaagg ataaattttt
      961 aggagtcatt agcgattcaa acatcagaaa agctttaatt agtggcaaaa ctttaaaaga
     1021 tagtatcaag gatatttaca ctaaaaatcc catcaccata aaagaaaaca caagcaaaga
     1081 acagctttta aaaatttctg ctaaaaccga tatttatgat tttcctgttt tagatgaaaa
     1141 agggcaaatt ctttccataa aatctgtctc atcgctctta aaagccaatc caaactccat
     1201 tatcatcatg gctggtggct taggctctcg cttaaaagaa ttaactaaag atactccaaa
     1261 acccatgcta aaagtaggca aaaaacccat tttagaaagt atagtccaaa ggcttaaaaa
     1321 tcaaaatttt gaaaatttta tcttttgtgt gaattataaa aaacaaatca tagaagatta
     1381 ttttcaaaaa gggcaaaaat ttggggttaa aatttcttat attaaagagc gtaaaaaact
     1441 aggcacagca ggagctttaa gccttataaa acaagaattt aaagaaagtt ttatcgttat
     1501 gaatgcagac attttaaccg agcttgattt taatgatctt ttaaaagcgc ataaaaaatc
     1561 aaaagcttta atgagcgttt gcgtgcgtga gtttgagcaa caaattcctt atggagtgat
     1621 cactcaaaaa caaggtttta tagaaaatat agaagaaaaa cctacccaaa aattcctagt
     1681 aagtgcgggg atttatgtac ttgaaaatga aattttaaat ttaattgcta aaaatgaata
     1741 cctagatatg ccagaactca tcaaactcgc tctacaaaaa ggtaaggtaa atacctatat
     1801 catcaatgat tattggatcg acattggaag gccagatgag tttttaaaag ccaatgagga
     1861 ttttaaatga aagtcttaat cataggcttt ggaagcatag gaaaaaagca ttttttagcc
     1921 ttaaaaaatt taaagtatga agtaagtttg ctttctttaa gtgctaaaaa agaagagttt
     1981 gaaaaaactc aaatctatcg ttccttaaaa gaatgtcatt taaatgaatt tgatcttttt
     2041 atcatcgcaa atatcaccac agagcatttt aacaccttaa aagctttaaa tgagcttgta
     2101 aaagataaaa tcatactcgt agaaaaacct ttatttgaaa aaagccaaaa tttcacaagt
     2161 ttaaaaaatc acatttatgt agcatattta ctgcgttttc atcctgtgat tgtcgcttta
     2221 aaaaggcttt taaaaggtga aaaaatttat tttgctagtt tgatttgcaa ttcttatttg
     2281 ccccattgga gagctttaga ctacaggcaa aattacagcg ctaaaaaaga gctaggtggt
     2341 ggggttttac tcgatctttc tcatgaaatc gatctagcct tttttctttt tggaaactta
     2401 gagcttatat actcccaaaa tgctaaaatt tcagagcttg acataacaag cgatgatttt
     2461 gcctttttgg ttttaaaaaa ttcacaaaaa gctaaaattc atatagaatt agactatttt
     2521 tctaaattca acaaaagaga aatgaccatc catactttag aaaaaagctt taaagccgat
     2581 ttaataaaca ataaaatcga aatttatcac aaagatcaaa gtcaaaaaat cttaaatttt
     2641 gaaaatgata cgataaaaac ccttcaaaat ttacatcatg cagtctttga aaaagacaaa
     2701 gaactttgcg atcttaaaca ggctttaaaa gtgcttgaaa tttgtgataa agtaaggaaa
     2761 aaaaatggct gaaattttat gtaccatttg tgctagaggt ggaagcaagg gtgttaaaaa
     2821 caaaaatatt agaaagatta acgaacttga aatgatagct tatagtatca tacaagctca
     2881 aaattcaaag ctttttaaac acatagtcat aagtactgat agtgatgaaa tcgcaagtgt
     2941 agcccaaaaa tatggtgctg aagttttttt caaaagagaa gctcatcttg ccaatgatcg
     3001 ggctgcaaaa cttcctgtca tgcgtgatgc cttgctaaga agtgaagagc attttaaaac
     3061 gcgttttgaa actctcatag acttagatac ttcagccccg cttcgctcaa gccttgatat
     3121 aaaaaaagct tatgaaagtt ttgttgaaaa tgataattcc aatctcatca ccgcagttcc
     3181 tgctagacgt aatccttatt ttaacctcgt agaaatacaa aataacaagg tagtaaaatc
     3241 caaagaagga aattttacca ctcgccaaag tgccccaaaa tgctatgata tgaacgctag
     3301 tatttatatc tttaaaaggg attatctttt agaaaatgat agtgtttttg gcaaaaacac
     3361 agggcttttt gtaatggatg aaagcacagc ttttgatatt gatagcgagc ttgattttaa
     3421 aatcgtagag tttttaatct ctttaaaaaa tttatcgcca aaggattttt aatgcttgaa
     3481 aataagatca tctttgtaac aggagcttgc ggacgcatag gtaaagcgct ttgcaaaaaa
     3541 atacttctta gcaaaggtat ccctatactc gcagatatca acaaagaatg cttaaataaa
     3601 ttgcaagaaa atttagaaac aaattttaaa acaaaacttt taagcttaga acttgacatc
     3661 accaaacaag aaagtttaca aattgccctt caaaaaagtc aagaaagata cggcaaaatc
     3721 gatgcttttg ttaactcaag ctatcctttt ggcaaagatt ggggtaaaac gccttattat
     3781 gaactcaaat acgaacaaat ttgtgaaagt ttaaatttac atttagcagg ctttatgctg
     3841 gctgctcaag aatttgtgaa attttttaaa caacaaggct atggcaatat catcaatctt
     3901 agctccatta tgggagttta tgcgccaaaa tttgaaaact atgaaggcac ttccatgcaa
     3961 agctctttag aatatagcgt gataaaagca gggattaacc acatgggtac ttggctagct
     4021 aaagagcttt ttaatcaaaa catacgcgtt aataccctag caagcggggg aattttagac
     4081 aatcaaaacg aacttttttt aaaagcttat agaaaatgtt gtgcgagtaa aggcatgtta
     4141 gatgctgatg atgtgtgcgg aactttggta tttttgctta gtgatgagag tagatttatc
     4201 acagggcaaa ccttagtggt agatgatgga tggggcttat gatgaccttc acccctactc
     4261 aaaaagaact ctttaacaaa aacattgagg ctttaagcaa tattctttta aaagaaagtt
     4321 taaaagaaat caagtctagt aaatttgaac ttatcttagg taaagataat ctagatatca
     4381 atctaaaaga tacaagtgat aatactttta tttatgaaaa tgttattgat gaattaaact
     4441 ctatgctaaa cacttataat gataaatatc tactttatcc tgtattatat ttttatggtt
     4501 ttggaaatgg aattttattt aaagctttat tgcaaaataa aaatcatcaa catattgttg
     4561 tttttgaaaa agatatagaa atcatttgga taatgtttca tatcttagat ttttcaaatg
     4621 aattgcaaaa ttcaagattg atggttttgc aaacaagttc tttggatata gaattttttt
     4681 ctaatttttg ctctagcaaa cctttctttc aattttctag aatttatttt ttagaactga
     4741 tgagtcatta ttatgaaaga tttcatgaag atattttagg attgaataaa aaattagcag
     4801 aaaattttaa aaattctatt gtttctcatg gtaatgatcc tctggatgct cttcaaggca
     4861 tagaacaatt tgtttataat cttcctcaaa tgatcactca tcctagttat aaagaattac
     4921 tttccaaaag aaaaaattta agtgatacag ctattattgt ttctacagga ccatctctta
     4981 ctaaacaact tcctttgtta aaaaaatatg ctaataaagc tacaattttt tgtgcagata
     5041 gtgcttatcc tattttggct aaacatgata tcaagcctga ttatgtttgc atgcttgaaa
     5101 gaagtgaatt tacggctgaa ttttttaatc atgattttgg ggaatttgat agggaggttt
     5161 gttttattat taaatctgta gtacacccta atgccataaa ttacctaacc aaaaaaaccg
     5221 ataattttac cctagtttca acctatgcaa gttttataaa ttatttaaaa ctggatcatt
     5281 ttgggtattt taatatggga tttagcgttg cacatatggc ttgttatctt tctttgcatt
     5341 taaaacataa aaacatcatt ttcataggac aggatttagc ctatgcaaaa aatggtaatt
     5401 ctcatcctga tgattatcaa aactcagcca cctatgaaag taaggcgcat gaacctattt
     5461 taactaaggc ttatgggggg aaaggagaag ttaaaactca tcatgtttgg cttatgttta
     5521 aacaaaattt agaacaagac atagaaaaaa tacaaaaata tttagatact aaagtttaca
     5581 actgcaccga agggggagca aggataaaag gagccataga aaaacctttt ctttgggctt
     5641 gtgagaattt acttgataaa gatttaaata aaccttttga aaaattagaa cctttaagtt
     5701 taaataaaca aaatgagttt ttacttaagg cttattataa agtttatcaa agtattaaac
     5761 attgtaaaga ttttaacgat aattttatta aagtttatga taaaataaaa aattctttta
     5821 cgagtttaca aaattctcaa aaaaatgaaa tttttattca agaaattatt caagatatag
     5881 ataaaaccaa aactcaaata gatgaacttt acaatactca aaaagatttg atacaaattt
     5941 taggtccctt actaactcaa tttgaactta atcttgctag aatttatgtc ttaaatccta
     6001 aaaccaaaga agatgctttt aataaaagta ttctttggat aaaagaacat ttagaattta
     6061 tggaattagt ttatggacat attaaagcac aagaaaatgc tttgataaaa aatatacttc
     6121 ctttagaaga aaaacttaaa gaaagaaaat tagataaatg gatggaaagg gtgagaaagt
     6181 gagagaagag ctttttttaa aaaatactca agctttgttt gaggtcgatg agtttttagc
     6241 ttgtacactg agatcactta aatacttaac ttttgcactt atccaagatg aaaatggaat
     6301 aaattttaaa aaagatgata tttttcttta tgaaaatccc aataaagagc ttttagaaaa
     6361 ccttactctg tttaaaaccg aatataacaa atatcctgtt ttgttttttt atggctttgg
     6421 aaatggaatg ttttataaaa ctttatgtaa aaacaaacaa cataaacaca ttatcatttt
     6481 tgaagacaat cttgaaattt taactttagc ttttcattta tttgatttta gcgaagaatt
     6541 aaaaaaagag caactaatac ttttttatac tccaaatatt aatacagcac aactcaccac
     6601 actttttacc tatgaaatca ttcaaaaaag tgtaaaaatt tttaatcttt ttatccataa
     6661 tgatttttat caacaatttt atagcactca aatacaaaat ataaatactc aactgataga
     6721 aatgatacga tttatcgttt taaacaaagg taatgatcca catgattctt tagttggaat
     6781 caaacatacc ctagataatc tccctaaaat gttaaatcat ggaatttttc aagaatttct
     6841 caaagaaaga agagctaagg ttaaaaatgc tatcattgtt tctacaggac caagtcttat
     6901 aaaacaactt cctttattaa aaaagtatgc taataaagct acgatttttt gtgcagatag
     6961 tgcttatgtt atccttggaa aatacggtat aaagcctgat tatgtttgca tgctagagcg
     7021 tgatgatata gtttctaaat gttttgataa tgattttggc gattttaaca aaggcatact
     7081 tttcatactt gcttctgtgg ttcacaaaga agtattagat tttttagaaa aagatcaaag
     7141 aacttatatg cttgtacatc gccctttaaa ttttgcagct agtttaaaac ttgatgaata
     7201 tggatatctt ggagtaggac atagtgtttc aaatatgatc tatgaactag caggagcttt
     7261 aagatttgaa aatatcattt ttataggaca ggatttagct tatggcgagg atggaagttc
     7321 acatcctaaa gagcatatac atggaagtca aggtgaagaa atcagaggag aaaaatatac
     7381 actagcttat gggggaaaag gcaaagtaag aactcaactc acttggaatt tatttcgtca
     7441 agcttttgaa aaagatatat tttgggcaaa agaaaaactc aatatcacca cctacaa
//
LOCUS       DARAII010000086         7452 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.086, whole genome shotgun sequence.
ACCESSION   DARAII010000086 DARAII010000000
VERSION     DARAII010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7452
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.086"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            22..717
                     /gene="dsbI"
                     /locus_tag="SB143_001434"
     CDS             22..717
                     /gene="dsbI"
                     /locus_tag="SB143_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEF9749965.1"
                     /translation="MKNLYWFVYFSKWQDMRNPWFIMSIIMISLVLIAHFLFQEYLYM
                     RPCEQCVYIRLDMLIIALGGIIALINPKNTIIKILAYTLAFYGIWLGLEHSLNLNRIH
                     EAISTENPFSGVNGCRDIPLYPFNLPLHERFPSWFKPVGQCGMDFPMVPKSAYLNAFQ
                     EFFVGKNGIYNNGWYLIPSLKFMNMATCCFIAFLCSFILLFIMFVSYVFSQRKIIFTI
                     ITISLVVALKILG"
     gene            807..1445
                     /locus_tag="SB143_001435"
     CDS             807..1445
                     /locus_tag="SB143_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEF9749966.1"
                     /translation="MFKKMTKILTSLSLVCTFAMADDFITLSETLPDSKNSVVEAFSY
                     KCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEYANELNELFAFAQFKDEQNGK
                     DASYSDSLSHKLADVYFVVYFINKQDNFSSSDEFYDIGLKAMNVDKNEVLNFLSTPKA
                     KEILNEFKRANDIARTYGTPAFVVNGKYQINPSAISSMQALEDIVKKLSNMP"
     gene            1570..1710
                     /locus_tag="SB143_001436"
     CDS             1570..1710
                     /locus_tag="SB143_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749967.1"
                     /translation="MKNLSVQEKKDLDNCVFKTLGKKEPSALVLLFKKILLKLKTFFY
                     SK"
     gene            complement(1698..2330)
                     /locus_tag="SB143_001437"
     CDS             complement(1698..2330)
                     /locus_tag="SB143_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749968.1"
                     /translation="MKKVFPILISLCSLSLANVYEKLNDFAYEKKPNKDFKIQEVKLV
                     QFLQDDKNCLELLIEAGRVRILKSYNECQKLSKDADFQKFLNEDFLRLYKNNGYSINE
                     NLQDLKKAMQDIMIYYKLRFAFSKNIQDMSKNKNLSILNIDEKEGGTLLYKINNQACV
                     AIELARHNSRMAMKVYGMENLDKECKLFIQAPSFKNISFTKNDFKWYYLE"
     gene            complement(2327..2569)
                     /locus_tag="SB143_001438"
     CDS             complement(2327..2569)
                     /locus_tag="SB143_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749969.1"
                     /translation="MPQTHNKNLKNELEDLRYELSIVLEAMLLYAGVKREKLESAIEA
                     YIDNIDSVLENSNKEGVDEVLEVVEFLKNQHSELFQ"
     gene            complement(2550..3602)
                     /locus_tag="SB143_001439"
     CDS             complement(2550..3602)
                     /locus_tag="SB143_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEF9749970.1"
                     /translation="MKIYHLSHTDLDGYACQYIVNFYFKNVNFYNSNYGKEINENFNA
                     ILADIEKDNSFGQAIILITDLNLNLNQCEEFDKICKEKNIKIFLLDHHQSGEECAQKY
                     AWYLLDNQRCATKITYDFFSKICKPDLELLNFAQVVNAVDIWLSEDANFELGKVFLGL
                     IANAKEINRVMFKEAQVFYMFFLLERARKFINQPNSHILLDNAIHFIKKDFFAKNHDD
                     TLSNLISYFVVEKLSELKEEFSIEYEGHKGILTSNIGNTSIIGNEFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKKLVGGGGHKNASGGLFAAYKDGANYNYIKAQIVDLI
                     KSKELKKGNSDATNTQ"
     gene            complement(3611..5788)
                     /gene="flhA"
                     /locus_tag="SB143_001440"
     CDS             complement(3611..5788)
                     /gene="flhA"
                     /locus_tag="SB143_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEF9749971.1"
                     /translation="MAKNKLVDLVFPFLGPLIGPVLRAKSLTIVGFIVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPAAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEIIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGAFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPHLSLGFMALVFLGLGYLTK
                     QVKEGKIEVNAPKKAKASAANAASGAGGAGGVTAPAKKSEEEILKEEEHKINDILKVE
                     ILELELGYGLIKLAESELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLK
                     GVSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIV
                     IDPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKI
                     LKDLLKHNIPIKDMLTILESISDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLD
                     IFILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCV
                     EPQLRKFIADICYNFNINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            complement(5775..6185)
                     /locus_tag="SB143_001441"
     CDS             complement(5775..6185)
                     /locus_tag="SB143_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEF9749972.1"
                     /translation="MLFTKASEYALLSLIYIAHKENPQDVDSLALELNIPKSFLAKIL
                     QTLAKDNLLKSFKGAKGGFALIKEPSQYSIKEIVNSAEKKEVSVFECSGGVCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSLTLADIMNHNGKK"
     gene            6351..6623
                     /gene="rpsO"
                     /locus_tag="SB143_001442"
     CDS             6351..6623
                     /gene="rpsO"
                     /locus_tag="SB143_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEF9749973.1"
                     /translation="MALDSAKKAEIVAKFARKAGDTGSTEVQVALLSARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLAYLKRKDYNSYSKLITELNLRDK"
     gene            complement(6694..>7452)
                     /locus_tag="SB143_001443"
     CDS             complement(6694..>7452)
                     /locus_tag="SB143_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEF9749974.1"
                     /translation="VNALSNMVAEMERRYRLMAEAKTKNIENYNEKMKELGEEELPFI
                     VVIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPS
                     RISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVD
                     FLKDQQSVEYDESFLKDQQSMGVTSSESMNNGEYDELYEDAKRVILSDGKTSISYLQR
                     KLNIGYNRAANIIDQLTESGVLSEPNSKGQREIL"
BASE COUNT         2443 a         1297 c         1063 g         2649 t
ORIGIN      
        1 atttaaggag caaaaaataa ggtgaaaaat ttatattggt ttgtttattt ttctaaatgg
       61 caagatatgc gtaatccttg gtttattatg agtattataa tgataagcct tgttttaata
      121 gcgcattttt tatttcaaga gtatctttat atgagacctt gtgaacaatg tgtttatata
      181 aggttagata tgttaattat agctttagga ggcatcattg cgctgataaa tcctaaaaat
      241 accattatta aaatccttgc ctatacttta gctttttatg gaatttggct tggattagaa
      301 cattcgttga atttaaatcg cattcatgaa gctattagca cggaaaaccc tttcagtggt
      361 gttaatggat gtcgcgatat tccactctac ccttttaatc tgcctttaca cgaacggttt
      421 ccttcttggt ttaaacccgt aggacaatgc ggaatggatt ttcccatggt tccaaagtct
      481 gcttatttaa atgctttcca agaatttttt gtaggaaaaa atggaattta taataatggc
      541 tggtatttaa tccctagttt gaaatttatg aatatggcta cttgctgttt tatagcattt
      601 ttatgctctt ttattttact ttttataatg tttgtaagct atgtttttag tcaaagaaaa
      661 attattttta ctatcattac tataagctta gttgtagcgc ttaagatatt gggttaaaaa
      721 aatacttatt ttaaagatta aattttttac ttgtttatcc tttttaaata gaattacttt
      781 ttatatcaaa ttaaggataa acaatcatgt ttaaaaaaat gacaaaaatt ttgacaagct
      841 tgagtcttgt ttgcactttt gcgatggcag atgattttat caccctatca gaaactttgc
      901 ctgattctaa aaattctgtt gtggaggctt tttcctataa gtgtatacat tgttacaatc
      961 accataaatt tggcacctta gaaaaactta gagaggcttt tccaaatttg cattttaaac
     1021 tctatcctgt gagccttatg aatggagaat acgcaaatga acttaacgag ctttttgcct
     1081 ttgcccaatt taaagatgag caaaatggca aagatgctag ttatagtgat agtttatcac
     1141 ataaacttgc cgatgtttat tttgtagttt attttataaa caagcaggac aatttttcaa
     1201 gctcggatga attttatgat ataggcttaa aggctatgaa tgtcgataaa aatgaagtat
     1261 tgaatttttt aagcacccct aaagccaaag aaattttaaa cgaatttaaa agagcaaatg
     1321 atatagctag gacttatggc actcctgctt ttgttgtaaa tggtaaatat caaatcaatc
     1381 ctagcgccat cagttcaatg caagctttag aagatatcgt caaaaaactt agtaatatgc
     1441 cataaaataa aacaatgcat tttctaacac tagataatgc attgaaattt aatattaatt
     1501 tttcttttaa tgcaaaaata aagttcttta gttataatta gttcgcaata tttttaaagg
     1561 ttgtttttaa tgaaaaattt aagcgttcaa gaaaaaaaag atcttgataa ttgtgttttc
     1621 aaaactcttg gtaaaaaaga accctctgct ttagtgcttt tatttaaaaa aatactttta
     1681 aaattaaaga ctttctttta ttctaaataa taccatttaa aatcattttt tgtaaaagaa
     1741 atattcttaa aagatggagc ctgtataaat aatttgcatt ctttatctaa attttccatt
     1801 ccatagactt tcatagccat tctagaattg tgtcttgcta gctctatggc tacgcaagct
     1861 tgattgttga ttttataaag aagtgtgcct ccttcttttt catctatatt taaaatgctt
     1921 aaatttttat ttttactcat atcttgtata tttttactaa aagcgaaacg caatttataa
     1981 tatatcataa tatcttgcat agccttttta agatcttgca aattttcatt gatagaatat
     2041 ccattgtttt tatacaatct taaaaaatct tcattaagaa atttttgaaa gtcagcatcc
     2101 ttgcttaatt tttgacactc attatagctt ttaagaattc ttacccgccc tgcttctatc
     2161 aaaagctcaa ggcaattttt atcatcttgt aaaaattgca ccaatttaac ttcttgaatt
     2221 ttaaaatctt tattaggctt tttttcatat gcaaaatcat tgagcttttc ataaacatta
     2281 gcaagtgata aagaacaaag actaataagt atcggaaata cttttttcat tgaaaaagct
     2341 ctgaatgttg attttttaaa aattctacca cttctaaaac ttcatcaacc ccttctttgt
     2401 ttgaattttc caagacactg tctatattat ctatataagc ttctatagca ctttctagct
     2461 tctctctttt aacacctgca tataaaagca tagcttctaa aactatgctt aattcatatc
     2521 ttagatcttc taattcattt tttaaatttt tattgtgtgt ttgtggcatc tgaatttcct
     2581 tttttaagtt ctttactttt tatcaaatca acgatttgag ctttgatata gttataattt
     2641 gctccatctt tataagctgc aaaaagccca ccactagcat ttttatgccc tcctccacct
     2701 actagctttt tagccatcaa gcttacatca atcttaccat ttgcacgaaa acttaaggtt
     2761 tttctagagc ttacatcgat gaaaaaatca tagtcgggat ttttaactaa aaattcatta
     2821 cctatgatag aggtattgcc tatatttgag gtaagaattc ccttatgacc ctcatattct
     2881 atactgaatt cttcttttaa ctcgctaagc ttttctacta caaaataaga gatgagatta
     2941 gaaagagtgt catcatgatt tttagcaaaa aaatcttttt taataaaatg gatagcatta
     3001 tctagtaaaa tatgtgaatt gggttggttt ataaattttc ttgctctttc aagcaagaaa
     3061 aacatataaa aaacttgagc ttctttaaac atcacacgat tgatttcttt tgcattggca
     3121 atcaaaccca aaaaaacttt tccaagctca aaattcgcat cctcacttag ccaaatatca
     3181 acagcattta caacctgagc aaaatttaaa agttctaaat caggcttaca aattttagag
     3241 aaaaaatcat aagtgatttt agtcgcacat ctttgattat ccagtagata ccacgcatat
     3301 ttttgagcac actcttcacc gctttgatga tgatctaata aaaagatttt gatatttttt
     3361 tctttacaaa ttttatcaaa ttcttcacac tggtttaaat ttaaattcaa gtcagtgatt
     3421 aaaataatag cctgcccaaa actattatct ttttctatat ctgctaaaat tgcattaaaa
     3481 ttttcattga tctctttacc ataattagaa ttataaaaat ttacattttt aaaataaaaa
     3541 ttgactatat attgacaggc atagccatca agatcagtat gtgaaagatg ataaattttc
     3601 attgatttcc ttaaagttct atcctaataa taccttcggt attaaaattt gtattttctg
     3661 ctatttctgc aaaactgagt acaactatat tgatattaaa attatagcaa atatcagcaa
     3721 tgaattttct aagttgtggc tcaacacaaa gtataaaagg cttgatacgc ccatttgcta
     3781 ctgcggcaac ttcagctctt aaagtgtcta ccaaagttcc tgtttgcgct acacttaaag
     3841 gtagatggta gctaccatct ctaaattgca cattttccat taaaactgca gaactagcag
     3901 agtctaaaat gaaaatatct aaatttcctt tatcgtcaag atacatatta gtaatcattc
     3961 tagccaaaga cgcccttaca tgctctataa tcatatcaaa gcttttgctt acttcagcaa
     4021 tatcgcttat ggattctaaa atagtcagca tgtctttaat aggtatattg tgcttgagta
     4081 aatctttaag aattttttga ataagactca caggagctac acctaaagca ccctctacta
     4141 tgattggata atcattttta accttatcaa gaagattttg cacctcttgg cgtgtaagaa
     4201 gttcgcttgc atgtgctttg ataagctcgc tcatatgcgt tgagatcaca cttgctggat
     4261 ctataacgat atagccattt aaagttgctt catcttttaa atttgcatct atccaaagtg
     4321 catcagagtt aaaagcaggt tcttttgtag caatcccttc aatctcttct gtgataaagc
     4381 cactatccat agccaaatat ttatcaggat aaatttcagc acttgctata gatacgccct
     4441 ttagtttaaa gctgtattca ttgggcttaa gtcgtaaatt atctcgaatt ctaatttttg
     4501 gcattaaaaa gcccaagctt tcggcaatac ttcttctcat ggagcgaatt ctttcggtta
     4561 attcgctttc ggcaagtttt atcaaaccat aacctagctc aagctctaaa atttcaacct
     4621 tgagtatatc gtttatttta tgctcttctt cttttaaaat ttcttcttcg ctttttttag
     4681 caggagcagt aactccgcca gccccacccg ctccacttgc agcattggcc gcacttgctt
     4741 ttgctttttt aggtgcatta acttcgattt taccctcttt tacctgtttg gttagataac
     4801 caagtcctaa aaataccaaa gccataaaac ctagtgataa atgtggcaaa cctggaacaa
     4861 gagcaaagat aaaaaggaca aaacctacga ttaaaagcgt tcggtattcg cttaaaagct
     4921 gtgtcaatgt cccttcggca aaattttcct catccttact tgcgcgggta atgataatag
     4981 ctgttgctgt agaagtgata agtcctggaa tttgtgatac aagaccatcg cctatggtaa
     5041 gtatagtata ggtggaagct gcatcagata aggccatatc gtgctgaaaa gcacctatta
     5101 aaaagccgcc tataatattt ataatggtta taataatacc tgcaaccgca tcccctttga
     5161 taaatttaga agaaccatcc attgcaccat agaaattggc ttcagcgata atttcttgac
     5221 gcctcgctct tgcagtttgc tcatcaataa gtcctgcatt taaatccgca tcgatagcca
     5281 tttgttttcc tggcatcgca tcaagggtaa atcttgcttg tacttcagag acccttgtac
     5341 tacctttggt tacaaccata aagttgatca aaaccaaaat acaaaataca atcaccccaa
     5401 tgaccatatt tccacccaca acaaattctc caaaggctgc gatgatctca ctcactgctg
     5461 ctggaccatt ctgcccttcg cttagaatca ttcttgtagt ggctatattt aaagaaagtc
     5521 taaaaagcgt aatgatgagg ataagagttg gaaaagtggt taaatccgtt ggtttaggga
     5581 tataaataga aattaaaata ataagcactg acaaagcaat acttaaagct aaaaaaaagt
     5641 ccaaaatagg acttggcaaa ggaacgataa taatagctaa aatacatact ataaatccaa
     5701 ctatagtaag gcttttagcc cttaatacag gaccaattaa gggccccaaa aaaggaaaaa
     5761 caagatcgac taatttattt tttgccatta tgattcataa tatccgctag ggtaagggag
     5821 tctaaaaatt catctacttt gttttgtaaa tttacaagca ttggcataag agtacaattt
     5881 tcttctttgt tattagggca tactccacca ctgcattcaa aaacacttac ttctttcttt
     5941 tctgcactat tgacaatttc ttttatgctg tattgacttg gctctttaat aagagcaaaa
     6001 ccacctttag cgcctttgaa ggattttaat aaattgtctt tagctagagt ttgtaaaatt
     6061 ttcgctaaaa aacttttagg aatattaagt tctaatgcta aagaatcaac atcttgagga
     6121 ttttctttat gagcgatata aatcaaagaa agtaaagcat actcgctagc tttggtaaat
     6181 agcacggatt tctcctttta tttaataaaa aaatagtttt aattataata aaaaaacctt
     6241 agaaaatggc ttaaaaaatg atgattgaaa taaaaatata aaattcagct tattttttgt
     6301 tttatttgat ataatcttag cttttaaaat caccaatcag gaggtctatc atggctttgg
     6361 attcggctaa aaaagcagaa attgttgcga aattcgctag aaaagcgggc gatactggct
     6421 cgacagaagt tcaagtagca cttttaagtg caagaattgc agaacttaca gaacatttaa
     6481 aaatctacaa aaaagatttt tcttcaagat taggactttt aaaacttgta ggtcaaagaa
     6541 aaagactttt agcttatcta aaaagaaaag attacaattc ttatagtaaa ttaattacag
     6601 aattaaatct cagagataaa taaaatttca caagcccttt ttttcagggc ttgatcttca
     6661 aatcattctt taatctttta aattaccaaa gatttataaa atttctcttt gtcctttaga
     6721 gtttggttcg ctgagcactc cgctttctgt aagctgatca ataatattgg ctgcgcggtt
     6781 gtatccgata ttaagctttc tttgcagata agaaatactt gtttttccat cgcttagtat
     6841 aacgcgtttg gcatcttcat aaagttcatc atattcgcca ttattcatac tttcactact
     6901 tgttacgccc atactttgtt gatcttttaa aaagctttca tcgtattcta cgctttgttg
     6961 atcttttaaa aagtctacga ttttttctat ctcaaattcg cttgcaaatg gagcatgtaa
     7021 acgaacgata gagcttgttc caggaggagt aaacaaacaa tcccctctac ctaacaaact
     7081 ttcagccccc atagcatcta agataacttt agagtcaatt ttttgcccta ctttataaga
     7141 aattctactt ggtaaattgg ccttgataag ccctgttaca acatctaccg atgggcgttg
     7201 tgtcgcaacg atcaaatgaa ttccacttgc tcttgccatt tgcgctaaac gacctatata
     7261 aaattccaca tccttacctg cagtcatcat caaatcagcc agttcatcga taatcacaac
     7321 aataaaagga agttcttctt cccctagctc tttcatcttt tcattataat tttctatgtt
     7381 tttagttttt gcttcagcca ttaaacgata gcgtctttcc atttctgcaa ccatatttga
     7441 aagagcatta ac
//
LOCUS       DARAII010000087         7398 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.087, whole genome shotgun sequence.
ACCESSION   DARAII010000087 DARAII010000000
VERSION     DARAII010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7398
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.087"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            153..863
                     /locus_tag="SB143_001444"
     CDS             153..863
                     /locus_tag="SB143_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749975.1"
                     /translation="MFCFLLYYRALLNKNNTQKIVAKIINAMRCQERLPEKIHYKEKI
                     ICMDNHHRDLSQILSSCVVEFYNSIDLYNTFRKNIGFENRKKIAIEMLNRASEHYGFF
                     GLNRGGITYKEAKISCAPIPVLNEFHHAMSHLCEVFLKDDARYTNLERAIPHFKRGMM
                     DIYKTIIRDFLILNQDALGVKQEALKIRELEYQTIGKPKKVTKNPTLNLISKKEEKVI
                     PGYKELCERIVRQSKNTN"
     gene            complement(1000..2019)
                     /locus_tag="SB143_001445"
     CDS             complement(1000..2019)
                     /locus_tag="SB143_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEF9749976.1"
                     /translation="MNENILKSLDSSEKETLQKGLQSLIEQTYIVENEYKILNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKKPKLLDIISLEKNRDELEFENRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFSR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINANEFNLLELTEECESAINSYNY
                     SSQIDFEIKFLDMKIYGDKALLSLVLQNLIYNAIDAIEESECENPKIKIQASCDEQNL
                     YIRVYDNGCEIKDENLVFEAFRTTKLKGNGLGLSLSKEIINAHKGELKFEIQPKNFYF
                     VLPLH"
     gene            complement(2016..2900)
                     /locus_tag="SB143_001446"
     CDS             complement(2016..2900)
                     /locus_tag="SB143_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9749977.1"
                     /translation="MLLKRKNINFNHFAKFCNTSALAKIFDFYSVFEGFESLDSLNFE
                     EDVFENIEYLLLKNYLHIKDYFKLDETASYALSLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLRAGIIKLEHSKEAKRIKDKRQKLKKELRSYVIQDKIIFANHFTRFFFYFLKPNE
                     KLILQNRYEEVLGLIKEKFELYQSFCFEQLSRELLEKKFQVSGVQSYWDKNLELDLYY
                     KDDEISFIGEVKFKNKKICRNILNLLESKAKSLKLEPNNYIIISKNGFSKEFYKICKQ
                     DLLLLDLNDFKILLEEDK"
     gene            2935..4209
                     /locus_tag="SB143_001447"
     CDS             2935..4209
                     /locus_tag="SB143_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEF9749978.1"
                     /translation="MCLQISDLKKEIILKKGTLHFDFTASALALKCVEKEIAKILPSY
                     ANTHSDSSLNSFKTQQIYEQARKDIKTSLDLSDEFALIACGSGSSSAIKKFQELLGIY
                     IPPLIKEKYFDKVDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKKGNIDFEIL
                     EKVLKENQYRKIIASFSLASNVTGILSDYKRISKLVRKFKGIVAFDASSFIPYKNIAC
                     KYYDALFISSHKLIGGIGGSGLLAIKKELCGSKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDEIGIEEIEKKEEILKEYFFEKLKIIPHLILYANNI
                     KTRLPIFAFNIKNISPFDLAYELSKKYHIETRAGCACAGPYGHDLLGLKDNEELKTKP
                     GWLRISLHYTHEKEDIDYFFEALQKSIAKLKF"
     gene            complement(4213..4289)
                     /locus_tag="SB143_001448"
     tRNA            complement(4213..4289)
                     /locus_tag="SB143_001448"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4253..4255),aa:Asp,seq:gtc)
     gene            complement(4311..4386)
                     /locus_tag="SB143_001449"
     tRNA            complement(4311..4386)
                     /locus_tag="SB143_001449"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4351..4353),aa:Val,seq:tac)
     gene            complement(4395..4470)
                     /locus_tag="SB143_001450"
     tRNA            complement(4395..4470)
                     /locus_tag="SB143_001450"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4435..4437),aa:Arg,seq:tct)
     gene            complement(4484..4559)
                     /locus_tag="SB143_001451"
     tRNA            complement(4484..4559)
                     /locus_tag="SB143_001451"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4524..4526),aa:Lys,seq:ttt)
     gene            complement(4563..4639)
                     /locus_tag="SB143_001452"
     tRNA            complement(4563..4639)
                     /locus_tag="SB143_001452"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4603..4605),aa:Asp,seq:gtc)
     gene            complement(4661..4736)
                     /locus_tag="SB143_001453"
     tRNA            complement(4661..4736)
                     /locus_tag="SB143_001453"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4701..4703),aa:Val,seq:tac)
     gene            complement(4749..4824)
                     /locus_tag="SB143_001454"
     tRNA            complement(4749..4824)
                     /locus_tag="SB143_001454"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4789..4791),aa:Lys,seq:ttt)
     gene            complement(4886..5671)
                     /locus_tag="SB143_001455"
     CDS             complement(4886..5671)
                     /locus_tag="SB143_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEF9749979.1"
                     /translation="MSLFIQKCKNFKFQAPLSKKTIFFNSLVLIFILSLFFYFSFSVS
                     AYHFNFVSLLEYKNKIIYGFFQTLSVSFFALICSIFLGIVICFFSLSKIIILRFFATL
                     YVELIRGTPLLVQVLLVFYIIANSLGFDDRYIVGIFILSMFSAAYLSEIFRAGILSVP
                     IIQIESARALGFSERQIFLYIIFPQAIKNILAPISGQLANLIKDSSLLSVIALNELTQ
                     SIQEVNSYIFATLEGYIVLAFAYLILTLPIGVFSRYLERKYQK"
     gene            5795..6172
                     /locus_tag="SB143_001456"
     CDS             5795..6172
                     /locus_tag="SB143_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749980.1"
                     /translation="MLILGHYLLTQNSNFCFIDESKKLKKDQISCFLYNEEIIQNAKN
                     ENLDFAVLIQDKNEIFLSNALGAKFLLFDDENLARFASEVAEFYLFDSKILLLVENLH
                     KLEKAYELRLDGVILKSLIQDYH"
     gene            complement(6181..7299)
                     /locus_tag="SB143_001457"
     CDS             complement(6181..7299)
                     /locus_tag="SB143_001457"
                     /inference="COORDINATES: protein motif:HMM:NF017893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inner membrane CreD family protein"
                     /protein_id="HEF9749981.1"
                     /translation="MEQKFDENKFMQKYARNQRLKSLTLKGVLIFIISIVLLIPLLML
                     KTLVEDRKYNAQNVISLMGKAWGSDEFYTPSLNEKILPNKLELWVDLKYQERIKGIYK
                     IPLYTAFVDFNASFNMENLSNFDENSIQFSNGNLKDLQFNILKDVLWVSGTLQLKGYG
                     SFDANMQAKENIIHINSNATNPSFEYALPNDYSIDKKGFSAFYEFQNSISNDRVEKRR
                     LSVEFYQGVDEYRLIDRMIKYGYLFIILTFLVLFLCELASKKNVILLQYAILGASLIV
                     FYLMLLSFSERIGFNFAYLFSSLAIIIPLSLYTLSIMGQKRFAIVMATILFILYLCLF
                     IMLKQDEYALLIGTFIAMFGIYAAMYFTRNLNKDYHQG"
BASE COUNT         2727 a         1198 c         1051 g         2422 t
ORIGIN      
        1 aaatgctttt ttttactgaa ttggaagatc agtttttaaa aggagaagtc ggcaaaaata
       61 gcataaaatt agacttcgaa tactatattt tatattctca atttttacaa atagatagag
      121 aatccttaat ttctggaaga aactatgaac ttgtgttttg ctttttactt tattatagag
      181 ctttattaaa taaaaacaat actcaaaaaa tcgtagcaaa aataatcaat gctatgcgct
      241 gtcaagaaag attaccagag aaaatacatt ataaagaaaa aataatttgc atggataatc
      301 accatagaga tctttctcaa atattaagct cgtgtgttgt ggaattttat aattcaattg
      361 atctatacaa taccttcaga aaaaatatag gatttgaaaa tagaaaaaaa atagcgatag
      421 aaatgctaaa tcgcgcatca gagcactatg gtttttttgg attaaataga ggaggaataa
      481 catataaaga agcaaaaatc tcttgcgccc ccataccagt tttaaatgaa tttcatcatg
      541 ccatgtcgca tttatgcgaa gtatttttaa aagatgatgc acgatatacc aatctagaaa
      601 gagcaatccc tcactttaag cgcggaatga tggatatata taaaacaatc atcagagatt
      661 ttcttatatt aaaccaagat gctttaggag tcaaacaaga agctctaaaa ataagagaat
      721 tagaatatca aaccatagga aaacccaaaa aagtaacaaa aaatcctacc ttaaacctaa
      781 tcagcaaaaa agaagaaaaa gttatcccag gatataaaga attatgtgaa agaattgtca
      841 gacaaagtaa aaatacaaac taaaagcgat atgaattaag ctttagtatg cagttttggc
      901 ttattgactt gctattttgt atacttaaag ctatctttga tatttaattt caaattttaa
      961 caattaaaaa attaaaaatt ttataagatt taattattat caatgcaaag gtaaaacaaa
     1021 ataaaaattt ttaggctgaa tttcaaattt taactcccct ttgtgagcgt taatgatttc
     1081 tttagaaagc gataagccca acccatttcc tttgagttta gtagttctaa aagcttcaaa
     1141 gaccaaattt tcatctttga tttcgcaacc attatcataa actctaatgt ataaattttg
     1201 ctcatcacag cttgcttgaa ttttgatttt aggattttca cactcgcttt cttcaatcgc
     1261 atctatggca ttataaatta aattttgcaa aaccaaagac aaaagtgctt tatctccata
     1321 aattttcata tctaaaaact taatttcaaa atcaatttga gatgagtagt tgtaagaatt
     1381 tatggcactt tcacactctt ctgttaattc taaaagatta aactcatttg cattgatgtg
     1441 cacaccttta gtaaaaagta aagtagaatt tacgatacgc tctaccctag caatagcctt
     1501 ttgaatttca agtacgatat gtttgttttt aagttcgcta cgagaaaaaa gtgtagaagc
     1561 aagcaaggat atagatccta taggatttct tatctcatgt gctaaatgcg ccgccacact
     1621 tcccatacta gcaagtcttt cattacgctt ttcatcgcta atatccgtag ctgaaactat
     1681 ggttttttca ttatgagcga taattttaac cgcataaaat ctattctcaa attcaagctc
     1741 atcacgattt ttttcaagac tgataatatc aagcaattta ggttttttca aggcttcttg
     1801 attttgcaaa ataatatttt tttctttatc taaaatccaa agcgcactag gcaaaacctc
     1861 gataatctca tctaccatag cacgcaaaga attgtaattt tcatttaaaa ttttatattc
     1921 attttctacg atataagttt gctctataag gctttgtaag cctttttgta aggtttcttt
     1981 ttcacttgaa tcaagacttt ttaaaatatt ttcattcatt tatcttcctc taataaaatt
     2041 ttaaaatcat ttaaatctag caaaagtaaa tcttgcttgc aaattttata aaattcttta
     2101 ctaaaaccat tttttgaaat gataatataa ttatttggtt ctaactttaa agattttgct
     2161 tttgattcta aaagatttaa aatatttcta caaatttttt tatttttaaa tttaacttca
     2221 ccgataaaac ttatctcatc atccttataa taaagatcaa gttctaaatt tttatcccaa
     2281 taactttgca ccccactcac ttgaaatttt ttctcaagta attccctaga gagctgttca
     2341 aaacaaaaac tttgataaag ctcaaatttc tctttaatca atcccaaaac ttcttcataa
     2401 cgattttgta aaatcaactt ttcattgggc tttaaaaaat aaaaaaagaa acgggtgaag
     2461 tgattggcaa agataatttt atcttgtatc acataagatc tcaattcttt tttaagtttt
     2521 tgtcgtttat cttttatcct ttttgcttct ttgctatgct caagttttat aatccccgct
     2581 cttaaaagat attttaaagt tgataaagct ttaaaatgct gaatttttct attgatagaa
     2641 aaacgcttac gattgttttt agccagtaag ctaagagcat aagaagcggt ttcatcaagc
     2701 ttaaaataat ctttaatatg taagtaattt ttcaataaaa gatattctat attctcaaac
     2761 acatcttctt caaaatttaa actatctaaa ctctcaaaac cctcaaaaac actataaaaa
     2821 tcaaaaattt tagctaaagc tgaagtatta caaaattttg caaaatgatt aaaatttata
     2881 tttttccttt ttaaaagtat ttttatagta taattttagc aaatttttaa aggattgtgc
     2941 ttgcaaattt cagatttaaa aaaagaaata attttaaaaa aaggcacctt gcattttgac
     3001 tttacagcta gtgctttagc gctaaaatgc gtggaaaaag aaattgctaa aatactacca
     3061 agctatgcca atactcattc tgatagctct ttaaactctt ttaaaactca acaaatttat
     3121 gaacaagcac gcaaagatat caaaacaagc cttgatttaa gcgatgaatt tgcacttatt
     3181 gcttgtggat caggctctag cagcgccatt aaaaaatttc aagaattgct tggaatttac
     3241 atcccgccac ttatcaaaga aaagtatttt gataaagtgg ataaaaacac cctaccctta
     3301 gttatcgtag ggccttacga acatcattct aacgagcttt cttttcgcga aggtttgtgt
     3361 gaatgcataa gaattcccct agataaaaaa ggaaatatag actttgaaat cttagaaaaa
     3421 gttttaaaag aaaatcaata cagaaaaatc attgctagtt tttccctcgc ttcaaatgtt
     3481 acaggtatat taagtgatta taaacgcatt tctaagttag tgcgtaaatt taaaggcata
     3541 gtcgcttttg atgcgtcaag ctttatccct tataaaaata tagcctgcaa gtattatgat
     3601 gctttattta taagctctca taaattaatc ggcggcatag gaggttctgg tcttttagca
     3661 attaaaaaag aactttgcgg aagtaaacct agttttgccg caggagggac tgtaggctat
     3721 gtttcgcgta cctctcaatg ctatctttgc aatgaagagg ctttagaaga aggagggact
     3781 cctggaattt tacaactcat tcgtgcgagc ttagctttta aaataaagga tgaaataggc
     3841 atagaagaaa tagaaaaaaa agaagaaatt ttaaaagaat acttctttga aaaactaaaa
     3901 ataatacctc atttaatcct atatgctaat aatataaaaa ctcgcttacc tatctttgct
     3961 tttaatatta aaaatatttc tccttttgac ttagcctatg aactgagtaa aaaataccac
     4021 atagaaacac gtgcgggatg tgcttgcgct ggtccttatg ggcatgattt attgggctta
     4081 aaggacaatg aggaattaaa aactaaaccg ggttggctaa gaattagttt gcattatact
     4141 catgaaaaag aagatattga ttatttcttt gaagcactgc aaaaaagtat cgctaaatta
     4201 aaattttaaa gatggcgcag cggacggggc tcgaacccgc gacctccgcc gtgacagggc
     4261 ggcattctaa ccagctgaac taccgctgca cctaagaagt aataattgaa tggtggtcgc
     4321 tataagactc gaacttatga catccacctt gtaagggtgg cgctctacca actgagctaa
     4381 gcgaccttaa tttttggcga cccctagagg atttgaacct ctgtttccac acagagagag
     4441 tgttgtcctg ggccactaga cgaaagggtc taaacccgat aagtggtgtc ccgtgttgga
     4501 ttcgaaccaa cggccccctc cttaaaaggg agatgctcta ccggctgagc taacgagaca
     4561 tatggcgcag cggacggggc tcgaacccgc gacctccgcc gtgacagggc ggcattctaa
     4621 ccagctgaac taccgctgca cctaagaagt aataatttaa tggtggtcac tataagactc
     4681 gaacttatga catccacctt gtaagggtgg cgctctacca actgagctaa gcgaccttaa
     4741 aaaataaatg gtgtcccgtg ttggattcga accaacggcc ccctccttaa aagggagatg
     4801 ctctaccggc tgagctaacg agacattttt taaatgaaaa tgtgattatg ccaaaatata
     4861 tatcgatttg tcaaggaaat ttagcttatt tttgatattt tctttctaaa tagcgtgaaa
     4921 atacacctat aggtaaggtt aagataagat atgcaaaagc taaaacgata tatccttcca
     4981 aggttgcaaa gatatatgaa ttcacttctt gtatactttg ggtaagctca ttaagtgcaa
     5041 tcacgcttaa taaagaactg tctttgataa ggttagcaag ttgcccacta ataggagcta
     5101 aaatattttt aatagcttga ggaaaaatga tgtataaaaa aatttgcctt tcgctaaatc
     5161 ctaaagccct agcgctttct atttgaatga taggtacact taaaatccct gctctaaaaa
     5221 tttcagataa ataagctgct gaaaacatgg aaaggataaa tatccctacg atgtagcgat
     5281 catcaaatcc taagctattt gcaatgatat aaaaaactaa aagcacttgc acaagcaagg
     5341 gggttcctcg tataagctcc acatataaag tagcaaaaaa tctcaaaata ataatcttac
     5401 ttaaagaaaa aaagcaaatt acaatcccca aaaatatact gcatattaaa gcaaaaaaac
     5461 taacagatag ggtttgaaaa aaaccataga taattttatt tttatattct agtaaagaaa
     5521 caaaattgaa atgataagca ctcacactaa agctaaaata aaaaaataag cttaaaataa
     5581 aaattaaaac caaagaatta aaaaatatcg tttttttaga aagtggtgct tgaaatttaa
     5641 aatttttaca tttttgtata aataaagaca agttttctcc ttttattgta gatattttag
     5701 ccaaagtcta attaaattta attaagctct aattttaaaa ttttttataa gttaaactta
     5761 actatgatta taaaaacaaa ataaggaaac taaaatgctg attttaggac actatttatt
     5821 aacacaaaat tcaaattttt gctttattga tgaaagcaaa aaactaaaaa aagatcaaat
     5881 ttcttgcttt ttgtataatg aagaaatcat ccaaaatgca aaaaatgaaa atttggattt
     5941 tgctgttttg atacaagata aaaatgaaat ttttctaagc aatgctttag gggctaaatt
     6001 tttacttttt gatgatgaaa atttagctcg ttttgcttct gaagtagcgg aattttatct
     6061 ctttgatagc aaaattttac tcctagtaga aaatttacat aagcttgaaa aagcttatga
     6121 attaagactt gatggagtga ttttaaaaag tctaatacaa gattatcatt aagaaaaaaa
     6181 tcatccttga tgataatctt tatttaaatt tctagtaaaa tacatagctg cataaattcc
     6241 aaacatagct ataaaggttc ctatcaataa tgcatattca tcttgcttca acataataaa
     6301 caaacataaa tataaaataa ataaaatcgt agccattact atagcaaaac gcttttgccc
     6361 catgatgctt aaagtgtaaa gtgataaagg tataattata gccaagcttg aaaaaagata
     6421 agcaaaatta aatcctatgc gctcgctaaa acttaaaagc ataaggtaaa atactatcaa
     6481 acttgctcct aaaatcgcgt attgaagtaa aataacattt ttctttgaag caagctcgca
     6541 taaaaacaac accaagaaag ttaaaataat aaacaaatac ccatatttta tcatacgatc
     6601 gatcaagcga tactcatcca ccccttgata aaactcaaca ctcaatcttc ttttctccac
     6661 cctatcattt gagatgctat tttgaaattc ataaaaagca ctaaagccct ttttatcgat
     6721 agaataatca tttggcaaag catattcaaa ggaagggttt gtagcatttg agtttatatg
     6781 tatgatattt tctttagctt gcatattagc atcaaaagag ccataacctt ttaattgtaa
     6841 agttccactt acccataaaa catcttttaa gatattaaat tgtaaatctt ttaaatttcc
     6901 atttgaaaat tggatagaat tttcatcaaa attgcttaaa ttttccatat taaaacttgc
     6961 attaaaatcc acgaaagcag tataaagcgg aattttataa atacccttaa tgcgttcttg
     7021 atattttaaa tccacccaaa gctctaattt attaggcaaa attttttcat ttaaacttgg
     7081 cgtataaaac tcatcactac cccaagcttt tcccatcaat gaaataacat tttgtgcatt
     7141 atattttcta tcttctacta aggtttttaa catcaataaa ggaataagta aaactatgct
     7201 tataataaaa atcaaaacac cttttaaagt aagagatttt aatctttgat ttctagcata
     7261 cttttgcatg aatttatttt cgtcaaattt ttgctccatc ttttttccct attcgtttct
     7321 taaagtatct aaaacattga tttgtgttgc ttttttagca ggataataag aagataaagc
     7381 aatgattatc aaagcacc
//
LOCUS       DARAII010000088         7389 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.088, whole genome shotgun sequence.
ACCESSION   DARAII010000088 DARAII010000000
VERSION     DARAII010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7389)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7389)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7389
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.088"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..410)
                     /gene="ribD"
                     /locus_tag="SB143_001458"
     CDS             complement(<1..410)
                     /gene="ribD"
                     /locus_tag="SB143_001458"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEF9749982.1"
                     /translation="MKNFYMNLALNEAWKYQFLTYPNPAVGCVILDKNEKILAIKAHE
                     KAGCAHAELNAIAHAFTNLNPEISLPQEANAMHEFICKNHRGIFKDSIAFVTLEPCSH
                     QGKTPPCAKLFSELGFKKIFISVKDENKIASGGA"
     gene            complement(412..765)
                     /locus_tag="SB143_001459"
     CDS             complement(412..765)
                     /locus_tag="SB143_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749983.1"
                     /translation="MDSTPESRWEFDQEIDAYKEGSVRSYSYDLPNHWSEADVEIYLE
                     KLYLHAKLAALTPPQGYPNTPRYYSPERLEFIYNKHKLDSKLDPRIPAIYRANFPEEL
                     RAKIRAFAKEYNIKE"
     gene            complement(2243..2572)
                     /locus_tag="SB143_001460"
     CDS             complement(2243..2572)
                     /locus_tag="SB143_001460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749984.1"
                     /translation="MKKFILISSILSSFFIFAEANELPSDKIQPEVKAIKEHFKDKVE
                     KIEFEAWTKGMGLNFSTQKYLNNQNYKKYAKTMAKLIRKTRGVKGKVEICYEGTPQKR
                     VHKCNKF"
     gene            complement(2648..2735)
                     /locus_tag="SB143_001461"
     tRNA            complement(2648..2735)
                     /locus_tag="SB143_001461"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2699..2701),aa:Ser,seq:tga)
     gene            complement(2768..2841)
                     /locus_tag="SB143_001462"
     tRNA            complement(2768..2841)
                     /locus_tag="SB143_001462"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2807..2809),aa:Cys,seq:gca)
     gene            complement(2862..2950)
                     /locus_tag="SB143_001463"
     tRNA            complement(2862..2950)
                     /locus_tag="SB143_001463"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2914..2916),aa:Leu,seq:taa)
     gene            complement(2960..3034)
                     /locus_tag="SB143_001464"
     tRNA            complement(2960..3034)
                     /locus_tag="SB143_001464"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3000..3002),aa:Gly,seq:gcc)
     gene            complement(3094..3852)
                     /locus_tag="SB143_001465"
     CDS             complement(3094..3852)
                     /locus_tag="SB143_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9749985.1"
                     /translation="MLAFFKGLGIGFLCLVLFVAGVIFNVEFLNKNKTTQTLNFSRSI
                     ETSMEAKPDIFHANINFWANENLSTQTFLSNEDKIQISNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGVQTPKGQRLHANLECEFTADKLENFNKLLNDLNSIIAKSEFIGIST
                     PALEPKFSKQTLKDNKEKLYSELLKKAYSYEKIYSLDLNKTCILKNLNIESIPNFYPR
                     ALNSMKSADNMELSLPIIKDEEQSISGTALFICK"
     gene            complement(3905..4500)
                     /locus_tag="SB143_001466"
                     /pseudo
     CDS             complement(3905..4500)
                     /locus_tag="SB143_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862264.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
     gene            4648..4806
                     /locus_tag="SB143_001467"
                     /pseudo
     CDS             4648..4806
                     /locus_tag="SB143_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
     gene            5173..7092
                     /gene="tet(O)"
                     /locus_tag="SB143_001468"
     CDS             5173..7092
                     /gene="tet(O)"
                     /locus_tag="SB143_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HEF9749986.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEERQRLAYVRLYGGILH
                     LRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSILGNEMLLP
                     QRERIENPLPMLQTTVEPSKPQQREMLLDALLEISDSDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTSFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            7144..7317
                     /locus_tag="SB143_001469"
     CDS             7144..7317
                     /locus_tag="SB143_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEF9749987.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
BASE COUNT         2327 a         1230 c         1313 g         2519 t
ORIGIN      
        1 tcagccccac cgcttgcgat tttattttca tctttaacgc tgatgaaaat ttttttaaaa
       61 cctagttcgc taaagagttt tgcacaagga ggtgtttttc cttgatgaga gcaaggttca
      121 agtgtgacaa aggctatgct atctttaaaa atacctctat ggtttttaca aataaattca
      181 tgcatcgcat tggcttcttg aggtaatgaa atttcagggt ttaaatttgt aaaagcatgg
      241 gctatagcat ttaattctgc atgagcacat cctgcttttt catgagcttt tatggctaaa
      301 attttttcat ttttatctaa gattacacag cctacggccg gatttggata ggttaaaaac
      361 tgatatttcc aagcctcatt taaggctaaa ttcatataaa aatttttcat ttcattcctt
      421 tatattatac tctttagcaa aagctcttat cttagctcta agctcttcag gaaagttagc
      481 tctataaata gcagggattc taggatcaag tttagaatca agtttgtgtt tgttgtaaat
      541 aaattctaat ctttcaggac tatagtatct tggtgtatta ggatagcctt gaggaggagt
      601 taaagctgcg agtttggcat gtaaataaag cttttctaaa taaatttcta catctgcttc
      661 actccagtga ttgggtaaat cataactata acttcttaca gaaccttctt tataagcatc
      721 tatttcttgg tcaaattccc atctactttc aggagtagaa tccacatctc ttggatcttt
      781 atatttaccc ttatcgattc catttagcat tgccgtcact actctattat taatatcgta
      841 aatgaaatca tattcatttg gatctataat ccattctgta gagattaact catctaaaaa
      901 aggaagcatt ccgtatttgt cataaggagg atttttagca aagtctttca tgagttgtct
      961 ttttaaaggg ttttcatgta ttccatataa aggacgatac aatccttcta aacatttttc
     1021 atctcctaat tgcactccaa gccaaagagc ttgaaaggct cttgatttta aaccagaatc
     1081 actaagatat acagctgctt cataaaaagc ctttttattg cccaatatac ctaagcaaag
     1141 ttgatattct cctgcaatta aatcagaata tatagtattt gccttagcac caaaagctcc
     1201 ataagatcca tgttcaaaag catttttata aagctcttca ctgctatctt taagctgagc
     1261 aaaataaaat ctatcatcaa atactgtatc ttctatttta cgagaataaa catataaacc
     1321 ccaataagca tcccctaagt catacttttc tataagttct tcataaatcc ttatgcttct
     1381 ataattagca tttaaaaatt cattgattag tttatccaac aaagcttcat tgttttcatc
     1441 ttggtctaat ttacctataa tggctctaaa ataatctttt gaatatccaa gttctgctaa
     1501 agcaagtcct gctttataat ctttaccctc ttcataagca tagcttaaat tcttaatggc
     1561 tttttgaaaa agatcatatc ctttataatc tagtctctta gcttctttat aatctttcat
     1621 accttcttta taagcatcaa taaatctttt ttctttaggt cttattaaag cactatcttt
     1681 taaatctatg ggagtacata ctaagccact tctttttact aaataattat accttccttc
     1741 tccatctaaa gaattataat aagctttttc tgctttggtc caaggagcta agcttccttt
     1801 aacaggatct tttaaataga tcttttgcca atctttaaat tcaagcaaag tggatttctc
     1861 tcctgtgtga aactctggat ctaaatattt aggctcataa aattttttat aaggggaatt
     1921 atcgactata ttgacagctt ctaaaagggc tttggtgtat tctttggtgt atttgccagt
     1981 gggtttttct cgttgattaa ataaaaattc attggttttt gtgttaagat ctatgcctac
     2041 agcattaggt gcatagactg ttttaatatc ttcattgtta ttcatatcct ctcctttgca
     2101 agcatttaag ccaaagatta ttgatatgag taaaataatt ttaaacatgc cttttcctta
     2161 atgatatata attaagaaat tgtagctttt ttatagtgaa aaaaacttaa aaattttata
     2221 tgatattaat ttaagtcagg aattaaaatt tattgcattt gtgaactcgt ttttgaggtg
     2281 ttccttcata acaaatttca accttgcctt taactcctct tgtttttcta atgagttttg
     2341 ccatggtttt agcatatttt ttatagtttt gattgttaag atatttttgg gttgagaaat
     2401 ttaaacccat gccttttgtc catgcttcaa attctatctt ttctactttg tctttaaaat
     2461 gttctttgat agcttttact tcgggttgga ttttatcact tggcagttca tttgcctcgg
     2521 caaatataaa aaaagatgaa agtatagatg agattaagat gaattttttc ataaattgat
     2581 ttccttattt tttagatcaa atcaatttat cataacagag tttgttaaac taatgaaaat
     2641 ttcaaagtgg ccgggagaaa gggattcgaa cccctggagg tgtgaccctc aacggttttc
     2701 aagaccgccg ctttcgacca ctcagccatc tcccgaattg aagttgtaaa aattaattgc
     2761 ctttttttgg aggcgacatc cggattcgaa ccggagatca aggctttgca ggcccatgcc
     2821 ttaccgcttg gctatgtcgc cctgataatt tttagaaaaa gtggtgcccg aggccggact
     2881 tgaaccggca cggaagaaaa attccgaggg attttaagtc ccttgtgtct accaattcca
     2941 ccacccgggc gggtgataat ggagcgggaa acgagattcg aactcgcgac cccaaccttg
     3001 gcaaggttgt gctctacccc tgagctattc ccgcgtaaag ctaaagatga aattctagca
     3061 aaataaactt aaaatgagtt tattttgctt tgattatttg caaataaata aagcagtgcc
     3121 actaatgctt tgctcttcat cttttattat aggtaaggaa agctccatat tatcagcgct
     3181 tttcatacta tttaaagccc ttggataaaa atttggaatt gattcaatat ttagattttt
     3241 taatatacaa gttttgttaa gatctaaaga ataaattttt tcataagaat aagctttttt
     3301 tagaagttcg ctataaagtt tttctttatt gtcttttagg gtttgtttgg agaatttagg
     3361 ctctaaggca ggtgtagaaa tacctataaa ttcacttttt gcaatgatgg agtttaaatc
     3421 atttaaaagt ttgttaaaat tttctagttt atctgctgta aactcacatt ctaaatttgc
     3481 atgaagtctt tgtcctttag gggtttgaac tccatcttta taagaaaaat taggttcaag
     3541 tgaaaaactt ccgccactgc aaaaattttc ttttttagag cgttctaaaa tttgattaaa
     3601 agtgttagaa atttgaattt tatcttcatt gcttaaaaag gtttgagtgc ttaaattttc
     3661 atttgcccaa aagttgatat ttgcatgaaa aatatcgggt ttagcttcca tacttgtttc
     3721 tatacttctt gagaaattta aagtttgagt agttttgttt ttatttaaaa actctacatt
     3781 aaaaatcact ccagctacaa aaagtaccaa acataaaaat cctatcccta aacctttaaa
     3841 aaatgctaac atttcttcat cctttaataa aaattaaata attttaacaa aataaatata
     3901 aaaattaata cccttttttg aaaaattcta aaggaaattt acatttttta catttaaatt
     3961 ttgcaccttc attttgtatt tttttatgaa ttccagaagg tacatcatga atttgcccta
     4021 tgcactcgca agcgtaaaaa taaattacag cctcatcttc atcatcttta atttcttcaa
     4081 aagtgatatc agctccattt tcagagctta aagaacctaa tctccattgt tctactctca
     4141 tatcttcata aagtatgtgt tctaaaagcc attttttacc atgatataaa gtttttctct
     4201 taggtcgttg gtggttttta tgttttgaat gatttttatc atggattgga tgatttcttt
     4261 atgaatttgg cgatgccttt caaagtctgg ataacgaatg aattgcatat atttttcttc
     4321 atcatcaaaa tggtatttca tatagttgaa aaaatctgta agcaaagctt taatttcatc
     4381 tctatgaacg ggtttatcaa atatatgttc aactttggct gcaagttcaa acagcttttt
     4441 gtgttggttg tctattctgc cattatgaac gctatagatt ttatcccatt ttggaagcaa
     4501 gctttatccc ttataagttt tttcttggct tctaataaaa aataaaagct cttgacattt
     4561 tttacatctc ataaccttgc cttcattggt aatactttca tgctctttaa agcttaacct
     4621 atgatctatc ttgcaaggac aagaatagat aaattcgaaa ttttcctcct gtgttagggt
     4681 atgaaacagg cacagggcat aacggaacag ctaaaggcag aaaacgcctt agaatggaca
     4741 ggatgcctca ataacataag ggcttgtgcg agggagattg tggaaaagga aattattttt
     4801 gcataaacag atgattagtg gcagggggaa atcctgccgc tttttctgct ttagtttgtc
     4861 agcttgacaa ataaagggtt aaggaatata attagattca gttttataca aggagttaat
     4921 aaatatgcgg caaggtattc ttaaataaac tgtcaatttg atagtgggaa caaaaagtag
     4981 cagtcccgtt tcacttttaa tatggggctt agttttttgt acccagttta agaatacttt
     5041 tatcatgtga ttttatatgc ccgaaaacat ataagtgttt tggggctatt ggagttattt
     5101 acccagtgat aggagtattt atcactgggt atttttatgc ccttttttgg gtgttgatag
     5161 gaggaaaatc acatgaaaat aattaactta ggcattctgg ctcacgttga cgcaggaaag
     5221 acaacattaa cggaaagttt attgtatacc agtggtgcaa ttgcagaact agggagcgta
     5281 gatgaaggca caacaaggac agatacaatg aatttggagc gtcaaagggg aatcactatc
     5341 cagacagcag tgacatcttt tcagtgggag gatgtaaaag tcaacattat agatacgcca
     5401 ggccatatgg attttttggc ggaagtatac cgttctttat ccgtattaga cggagcagta
     5461 ttattagttt ctgcaaagga tggcatacag gcacagaccc gtatactgtt tcatgcacta
     5521 cagataatga agattccgac aatttttttc atcaataaaa ttgaccaaga ggggattgat
     5581 ttgccaatgg tatatcggga aatgaaagca aagctttctt cggaaattat agtgaagcaa
     5641 aaggttgggc agcatcccca tataaatgta acggacaatg acgatatgga acagtgggat
     5701 gcggtaatta tgggaaacga tgaactatta gagaaatata tgtcagggaa accgtttaaa
     5761 atgtcagaac tggaacagga agaaaacagg agattccaaa acggaacgtt atttcccgtt
     5821 tatcacggaa gcgctaaaaa caatctgggg attcggcagc ttatagaagt gattgccagt
     5881 aaattttatt catcaacgcc tgaaggtcaa tctgaactat gcgggcaggt ttttaagatt
     5941 gaatattcgg aagaaagaca acgtcttgca tatgtacgcc tttatggcgg aatcctgcat
     6001 ttgcgggatt cggttagaat atcggaaaag gaaaaaataa aaattacaga aatgtatact
     6061 tcaataaatg gtgaattatg taaaattgat aaggcttatt ccggggaaat tgttattttg
     6121 caaaatgagt ttttgaagct aaatagtatt ttggggaacg aaatgctatt gccacagaga
     6181 gagagaattg aaaatcctct ccctatgctc caaacaactg ttgaaccgag caaacctcaa
     6241 caaagggaaa tgttacttga tgcactttta gaaatctccg acagtgaccc tcttttaaaa
     6301 tattatgtgg atactacaac gcatgagatt atactttctt ttttggggaa tgtgcagatg
     6361 gaagtcattt gtgccattct tgaggaaaaa tatcatgtgg aggcagaaat aaaagagcct
     6421 actgttatat atatggaaag accgcttaga aaagcagaat ataccatcca catagaagtc
     6481 ccgccaaatc ctttctgggc ttctgtcggg ttgtccatag agccgctccc tattggaagc
     6541 ggagtgcagt atgaaagcag agtttcactt ggatatttaa atcaatcgtt ccaaaatgcg
     6601 gttatggagg gggttcttta tggctgcgag caggggctgt atggatggaa agtgacagac
     6661 tgtaaaatct gttttgaata tggattgtat tatagtcctg taagtacccc cgcagacttt
     6721 cggctgcttt cccctatcgt attggagcag gctttaaaaa aagcagggac agaactatta
     6781 gagccatatc tccactttga aatttatgca ccgcaggaat atctctcacg ggcgtatcat
     6841 gatgctccaa ggtattgtgc agatattgta agtactcaga taaagaatga cgaggtcatt
     6901 ctgaaaggag aaatccctgc tagatgtatt caagaataca ggaacgattt aacttctttc
     6961 acaaatgggc agggagtctg cttgacagag ttaaaaggat accagccagc tattggtaaa
     7021 tttatttgcc aaccccgccg cccgaatagc cgtatagata aggttcggca tatgttccac
     7081 aagttagctt aacagcttgc aaaagtcata taaaatgaga tttgaaagga ttagagacta
     7141 attatgatga aatgcgaatg gatattgtgt cctgtttgtg ggagcaaaac ccgtaataaa
     7201 attaggaagg acactgtttt ggagaattat cccctttatt gtccaaaatg cagacaagaa
     7261 agattgatta aagttgacaa cttgaagata actgtcatca aagagccaga cgcttaagac
     7321 gcagagccga tgaaattgtg gaacaattca cgaatcatcg gctctttttg tttcgtattt
     7381 gaaagaaca
//
LOCUS       DARAII010000089         7385 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.089, whole genome shotgun sequence.
ACCESSION   DARAII010000089 DARAII010000000
VERSION     DARAII010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7385
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.089"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1562)
                     /gene="bamA"
                     /locus_tag="SB143_001470"
     CDS             complement(<1..1562)
                     /gene="bamA"
                     /locus_tag="SB143_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEF9749988.1"
                     /translation="MKKIISICALVALSNAAVIKEIKFSGLNHLSNASALNLTGLKIG
                     ETINLDKINTAILNLYKQNYFENIAVEENNGILNIIVTEKPSIAKISITGIASNDRKQ
                     VESILGIKRGTLFDEASAKEASERIKAYYEAKSYFDTIVEYRKKTLENTEGLELEFIV
                     NRGENIIINNVNLSGAEKFSYSDIEPAIVNKEKEFMGWMWGRNDGKLKIFELSNDSAR
                     ISDEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIENISIENPLFSEEEN
                     IQNVKNLRSTQGKLINIEDIRKDVKTIETQSADLGYAFAEVYPDIQKNDQTQEASVVF
                     KVIPHDKVYIRNVIISGNSRTVDRVVRRELYITEGNLYNRTDLSESTNALRRTSYFDD
                     VEIKEEKVDDTHIDLIVNVKEASTGAISGGIGYGSSDGLLLNASLSDTNIFGSGIKSS
                     VSVDKSDDTLSGRISLINPRILDSQYSLGGTLYSNDYEWDNYSEKNYGFDITLGRQFA
                     RYYNVSLTYNLE"
     gene            1638..2465
                     /locus_tag="SB143_001471"
     CDS             1638..2465
                     /locus_tag="SB143_001471"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEF9749989.1"
                     /translation="MKVAIIGLGLIGGSLGLCLKENKLISCVYGLDSSKENEQDALNL
                     GLVHELIEFENLHLCDMIFIATPVNAIIEILQKLVNLPSNTTIIELGSTKRKIIEKLP
                     AKLTKQTLFAHPMAGTENSGPKAAFKELYKDAVCVLCDSEVADDLHQKRAVEIFSHLG
                     MRIVFMDSTAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPIMWGSIFEQNKDNVLSSIEFFQKELEFCKKMIEEDKNEELKSWMQKANTLREIL"
     gene            2563..3936
                     /locus_tag="SB143_001472"
     CDS             2563..3936
                     /locus_tag="SB143_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEF9749990.1"
                     /translation="MARKKGKIYLYLLVLVLIGVLAFFISKTNAFETTPPKILMPDII
                     YSDLKKPISVHVKDDEGSIESVQIFLQKEGNETGMLIADEKIQNSNDITLQVALPKLA
                     YKEKVKSFIMEIKAKDKSFWNFFGGNEASKQVLIMIDDSAPKVNVLSNSYQIEQGGAA
                     SVVFSASDANLDKVYIETNTGKIFQATPYLKEGYYAALIAWDARDEEFRAYIIATDKA
                     GNITKERIRYYFVNRKYRVSNINLTDRFLDGKIEDLAQEYAPKDNNFTRFEKFKFVNE
                     TLRGNNEILIHKITSEVPESKIDDFKIDLFLPLRNGMKVADFADHRYYSYNGQFVSDS
                     YHMGIDLASVAEAPIISNNSGKVVFAEENGIYGLNLIVYHGFGVYSLYGHCSSKSVEL
                     DEILSKKSVIGRTGVSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNEGK
                     KIILGKN"
     gene            3936..4820
                     /locus_tag="SB143_001473"
     CDS             3936..4820
                     /locus_tag="SB143_001473"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEF9749991.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ATYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGDKYVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRDMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYISYAGSHHLNHLLTKEVLKDKDAY
                     EIVTLEKANEKAYEKVFA"
     gene            4832..5260
                     /locus_tag="SB143_001474"
     CDS             4832..5260
                     /locus_tag="SB143_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEF9749992.1"
                     /translation="MLNALSKPLMIGIYQDDKLVKSIESEEKASEFVPKILKILLKEF
                     SFDELIYANGPGSYMGIKISYVSLRTLSIVKNIPLFAISAFELNNNQPIAAHKNMCFV
                     KKEDEIILEENTAGEFFLPPNLSKLNKKDDNLPFYFLSAI"
     gene            5278..6156
                     /locus_tag="SB143_001475"
     CDS             5278..6156
                     /locus_tag="SB143_001475"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004288104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEF9749993.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLALFNHTIIEKSNFFSISVNGE
                     GSENLSLKKNNIFVSIFNEIYQRLSGRKDHFRFIFDNAIPLSRGLGSSSAVIIGAIAS
                     AYEMAGFKAEKEKILNKALKYENHPDNIAPAALGGFVVSMVENEKVFSIKKDLDENLN
                     AVVVIPNVAMSTEQSRNALPSNLSLKDCVFNLCHSSFLTACFLEKKYDLLALASKDLL
                     HQTRRMQNLPELFEVQKFALENKALMSTLSGSGSSFFNLAYKDDAKHLAQKMEQKFRN
                     FKILCLEFDNKGFKIC"
     gene            6210..6443
                     /locus_tag="SB143_001476"
     CDS             6210..6443
                     /locus_tag="SB143_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF448 domain-containing protein"
                     /protein_id="HEF9749994.1"
                     /translation="MCIVCKNRYLQKNMHRFKHFQGELYKDFAFGRSVYLCETCILSE
                     GKVLQKAFFKSCKNLNTKITQQNLKEIVLNGKN"
     gene            6430..>7385
                     /locus_tag="SB143_001477"
     CDS             6430..>7385
                     /locus_tag="SB143_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 N-terminal
                     domain-containing protein"
                     /protein_id="HEF9749995.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLNIKTASNAVEPEVAA
                     GIYEYIQTKIIPEAFKKNLKQDPVKKAKAAPKEEKKEEKSPKEVETKAPAKVVEEVKP
                     EPKTPEEPKENIQESLASATLAKRRGLVIVKKKKDEEEAAKKEEPKASTPSNEERLSL
                     KTMFSNADENLKKKKKEKKPFVATKKESAEKMDFLEGHDFADISLEDEDVVVLPDFSV
                     KEQEKPQNTMKKPPNFLRQAVGNSANLGLEGGIQRRSRKKPPKKVEKKENEAVSSVEI
                     SKEIRVYEFADKIGKSVSEVISKLFMLGMMTTKNDFLDEDAI"
BASE COUNT         2599 a          997 c         1367 g         2422 t
ORIGIN      
        1 tgctcaagat tgtaagttaa acttacatta taatatcttg caaattgacg acctagggtg
       61 atatcaaaac cgtaattttt ttcagagtaa ttatcccatt cataatcatt agaataaagc
      121 gttccgccca agctgtattg actatcaaga atgcgtggat ttataagact gattctccct
      181 gatagggtat catcactttt atctacactc acagaacttt taatacctga accaaaaata
      241 ttggtatctg ataatgaagc attgagtaac aaaccatcgc ttgaaccata accaatgcct
      301 cctgaaatag cacccgtaga agcttcttta acattgacga ttaaatctat atgtgtatca
      361 tctacttttt cttctttaat ttctacatca tcaaaataag aagttcttct taaagcattt
      421 gtagattcac ttaaatcggt gcgattgtat aaatttcctt cggtgatata aagttcgcga
      481 cgtactactc tatcgaccgt gcgagaattt ccagaaatga taacatttct tatatagact
      541 ttatcgtgag gaatgacctt aaatacaacg ctagcttctt gggtttgatc atttttttga
      601 atatcaggat aaacctctgc aaaagcatag cctaaatcag cactttgtgt ttctatggtt
      661 tttacatctt tgcgaatgtc ttctatattg ataagtttgc cttgggttga gcgtaggttt
      721 tttacatttt gtatattttc ttcctcgcta aataaaggat tttctatact tatattctca
      781 attttataag gcttgccttc tttgataaaa taagtcagat tggcctgata agtatcggta
      841 taggttttaa gataaggcga ggatacttgt acatcaagat atcctttttt catgtactca
      901 tcgctgattc ttgcgctatc attgcttaat tcaaaaattt tgagttttcc atcatttctt
      961 ccccacatcc agcccataaa ttctttttct ttattgacta tagcaggttc aatatctgaa
     1021 tacgaaaatt tctctgcccc gcttaaattg acattattaa tgatgatatt ttctccgcga
     1081 ttgactataa attcaagctc tagtccttcg gtattttcta gagttttttt tctgtattct
     1141 actatggtat caaaatagct tttagcctca taataagctt tgatgcgttc gcttgcttct
     1201 ttagcgcttg cttcatcaaa taaagttcct ctttttatac ccaaaatgct ctctacttgt
     1261 tttctatcat tagatgcaat tcctgtaatg cttattttag ctatgcttgg tttttctgtg
     1321 acaatgatat ttaaaatacc attattttcc tctacggcaa tattttcgaa ataattttgt
     1381 ttataaaggt taagtatggc ggtattgatt ttatcaagat ttattgtttc gccgattttt
     1441 aatcctgtaa gatttaaagc acttgcattt gaaagatgat ttaatccgct aaatttaatt
     1501 tctttaatta ctgctgcatt gcttagtgca actaaggcac aaatgctgat gatttttttc
     1561 atttattttt acctaaagct ttattaaaaa tttgtataat agcagaaaaa atttaacaaa
     1621 gggattgaga taatattatg aaagtagcaa ttatagggct tggattgata gggggttctt
     1681 taggactttg tttaaaggaa aataaattaa tttcttgtgt gtatggttta gattcaagca
     1741 aggaaaatga gcaagatgct ttaaatttag gacttgttca tgagcttata gaatttgaaa
     1801 atttgcattt gtgcgatatg atttttatcg caacgcctgt aaatgctatc atagagattt
     1861 tacaaaaatt agtaaatttg ccttcaaata caaccattat agagcttgga agtacaaaaa
     1921 gaaaaatcat agaaaaattg cctgcaaagc ttaccaaaca aactcttttt gcccatccta
     1981 tggcaggaac tgaaaacagc ggcccaaaag cggcttttaa agagctttat aaggatgctg
     2041 tttgtgtgtt gtgtgatagt gaagtggctg atgatttgca ccaaaaaaga gcagtagaaa
     2101 ttttttcgca tttgggtatg aggattgttt ttatggatag cacagctcat gatcatcatg
     2161 ccgctattat ttcgcatttg ccgcatgtga ttagtttttc tttagcaaat tttgtgatga
     2221 aagaagaaga taaaagaaat atcgttcatt tagcgggtgg ttcttttaag ggtatgagta
     2281 ggattgctaa atcatctcct attatgtggg ggagtatttt tgaacaaaac aaagataatg
     2341 ttttaagttc tattgaattt tttcaaaaag aattagaatt ttgcaaaaag atgattgaag
     2401 aggataaaaa tgaagaatta aagtcttgga tgcaaaaagc caatacttta agagaaattt
     2461 tgtgaaattt gctggatatt tactgaaatt ataataaaat ttttttaagt tttttaagaa
     2521 aaaataaatt ttgttaaaat aaaaatatat ttaggaaaaa atatggcgag aaaaaaggga
     2581 aaaatttatt tatatttgtt agttttggtt ttaatcggtg ttttggcgtt ttttatttca
     2641 aaaacgaatg cttttgaaac aacacctcct aaaatcctta tgccagatat catttatagt
     2701 gatcttaaaa aacctatttc agttcatgta aaagatgatg aaggttctat tgaaagtgtt
     2761 cagattttct tgcaaaaaga aggcaatgaa acaggtatgc ttatagcgga tgaaaaaatt
     2821 caaaattcaa atgatattac cttacaagtt gctctaccaa aacttgccta taaagaaaaa
     2881 gtaaaatctt ttatcatgga aattaaagcc aaagataaga gtttttggaa ttttttcggt
     2941 ggcaatgaag cgagcaaaca agtccttatc atgattgatg atagtgctcc aaaggtaaat
     3001 gtattgagca attcttatca gattgagcaa ggaggtgctg ctagtgttgt gttttcagct
     3061 agtgatgcaa atttagataa ggtttatatc gaaacaaata caggaaaaat ttttcaagct
     3121 actccttatt taaaagaagg ctattacgca gctcttatag cttgggatgc aagagatgaa
     3181 gaatttcgtg cttatatcat tgctacagat aaggcaggaa atataaccaa agagcgcata
     3241 aggtattatt ttgtcaatcg caaataccgc gtttcaaata tcaatcttac agatagattt
     3301 ttagatggca aaatagaaga tttagcacaa gaatatgcgc caaaggataa caattttacg
     3361 cgttttgaga aatttaaatt tgtaaatgaa accttaagag gcaataatga aattttgata
     3421 cataaaatca cttcagaagt gcctgaaagt aaaatcgatg attttaaaat cgatttattt
     3481 ttaccacttc gaaatggtat gaaggtagca gattttgctg atcataggta ttattcttac
     3541 aatggacaat ttgtaagcga ttcttatcat atgggtatag atttagcaag cgtggcagaa
     3601 gctcctatta taagtaataa ttcaggcaaa gtcgtatttg cagaagaaaa tggaatttat
     3661 ggacttaatt taatcgtcta tcatggtttt ggagtttata gtctttatgg gcattgttct
     3721 tctaaaagtg ttgaacttga tgagatttta agcaaaaaaa gtgtaatagg tagaacaggt
     3781 gtaagtggat tggctttggg ggatcatttg cactttggtg ttttagttca aggtgttgaa
     3841 acacgccctg agcaatggca agataaaaaa tggatagaaa ataatattta caatgtttta
     3901 aacgaaggta aaaaaataat tttaggaaaa aattaatgaa acaattaact ttagcaaaaa
     3961 ctgtcaaagg cgtaggtata ggacttcaca aaggtgagcc tatagaaatc actttagagc
     4021 ctttagaagc aaatagtggg atagtttttt ttagaagcga tttaaatgct acttataaag
     4081 caagccctga aaatgttatc aatactcaaa tggcaacggt tttgggcgat gaaagaggat
     4141 ttatttctac tatagagcat ttaatgagtg caatcaatgc ttatgggata gataatgtcc
     4201 gcatcgtttt aaatgctaat gaagcacccg taatggatgg atcaagcatt agcttttgta
     4261 tgatgcttga tgaagcaggg gttaaagagc ttgatgcacc taaaaaaatt atggtgatta
     4321 aaaagcctat agaggtaaga gacggtgata aatatgtgcg tttaactccg accaaagaac
     4381 cgcgtattaa ttatactatc aagtttgata atgctgttat aggcgaacaa agctataatt
     4441 ttgaattcag taagaaaaac tatatagaaa atatagcaag agctaggact tttggctttt
     4501 taaaagatgt tcaagccctt agagatatga atttagcatt gggtggaagt ttagaaaata
     4561 ctatagtggt agatgaaaat cgtattttaa atcctgaagg tttgcgcttt aaagatgaat
     4621 ttgtaagaca taaaatttta gacgcgattg gagatttgac tttgcttggg taccgtgttt
     4681 ttggagatta tatttcatat gctggaagcc atcatttaaa tcatttactt actaaagaag
     4741 ttttaaaaga taaagatgct tatgagatag tgacccttga aaaagcaaat gaaaaagctt
     4801 atgaaaaggt ttttgcataa aaaattcatt attgcttaat gccttatcta agcctttgat
     4861 gattgggatt tatcaagatg ataaacttgt aaaaagcata gagagtgaag aaaaggcaag
     4921 cgagtttgta cccaaaattt taaagatttt gctaaaagaa tttagctttg atgaattaat
     4981 ttatgccaat ggtccaggct cttatatggg gattaaaatt tcttatgtaa gtcttaggac
     5041 tttgagtata gtgaaaaata tccctctttt tgctatcagt gcctttgagc ttaacaacaa
     5101 tcaacccatt gccgctcata aaaatatgtg ttttgtaaaa aaagaagatg agatcatctt
     5161 ggaggaaaat acagctggag agtttttttt acctccaaat ttaagcaagc ttaataaaaa
     5221 agatgataat ctaccttttt actttttatc tgcaatttaa agaatttagg aaaaaaattg
     5281 aaaattttag tacctgctac aagtgcaaat ttaggccctg ggtttgattg tttgggattg
     5341 agtttagcac tttttaatca tactattatc gagaagtcaa atttttttag tatcagcgtc
     5401 aatggtgaag gaagcgagaa tttaagcctt aaaaaaaata atatttttgt aagtattttt
     5461 aatgaaattt atcaaagatt aagtggtaga aaagatcatt ttagatttat ttttgataat
     5521 gccattcctt tatctcgcgg acttggcagc tcttcagcag tgattatcgg tgctattgca
     5581 agtgcttatg agatggcagg ttttaaagca gaaaaagaga aaattttaaa taaagcgtta
     5641 aaatacgaga atcatcctga caatatagct cctgcagcac ttgggggctt tgtagtatcc
     5701 atggtagaaa atgaaaaagt tttcagtata aaaaaagatt tggatgaaaa tttaaatgct
     5761 gttgtggtta tacctaatgt ggcgatgagt acagaacaaa gtcgcaacgc cttgccttcg
     5821 aatttaagtt tgaaagattg tgtttttaat ctttgtcatt cttcttttct tacggcttgt
     5881 tttttagaaa aaaagtatga tttgctcgct cttgctagta aagatttatt acaccaaacg
     5941 cgtagaatgc aaaatttacc cgagcttttt gaggtgcaaa aatttgctct tgaaaataag
     6001 gctttaatga gtacgctttc gggttcaggc tcaagctttt ttaatttagc atacaaggat
     6061 gatgcaaagc atttagctca aaaaatggag caaaaattta gaaattttaa aattctttgt
     6121 ttagaatttg ataataaagg ctttaaaatt tgctaaaaga agaaaaaaaa agatataatt
     6181 ttgtaaaaga taaacatgag cccattcgaa tgtgtatagt ctgtaaaaat cgatatttac
     6241 aaaaaaatat gcatcgattt aaacattttc aaggtgagct ttataaagac tttgcttttg
     6301 gacgcagtgt ttatttgtgt gagacttgta ttttgagtga aggcaaagtc ttgcaaaaag
     6361 cattttttaa atcttgcaaa aatttaaata caaaaatcac tcagcagaat ttaaaggaga
     6421 tagttttaaa tggcaaaaat tagaattcat gaaattgcga aagaattagg ctatgacagc
     6481 aaagaaatta tcgagaaagc aaatgaattg ggattgaata tcaaaaccgc atctaatgct
     6541 gtagaacccg aagttgcagc aggaatttat gagtatatac aaactaaaat tatacccgag
     6601 gctttcaaga aaaatttaaa acaagatcct gtaaaaaaag ccaaagctgc acccaaagaa
     6661 gaaaaaaaag aagaaaaatc acctaaagaa gtagaaacaa aagctccagc taaagtcgta
     6721 gaagaagtaa agcctgagcc aaaaactcct gaagagccta aagaaaacat tcaagagagt
     6781 ttagcgagtg cgactttagc taaaagaaga gggcttgtga ttgtcaaaaa gaaaaaagat
     6841 gaagaagaag ctgcgaaaaa agaagagcca aaggctagca ctccttcaaa tgaagagcgt
     6901 cttagcttaa aaaccatgtt ttcaaatgcg gatgaaaatt taaagaaaaa gaaaaaagag
     6961 aaaaagcctt ttgtagcgac taagaaagaa agtgctgaaa aaatggactt tttagaaggc
     7021 catgattttg ctgatatttc tttagaagat gaagatgtgg tggttttacc tgattttagt
     7081 gtaaaagaac aagaaaaacc acaaaatact atgaaaaaac cacctaactt tttgcgtcaa
     7141 gcagtaggaa attcagcaaa tcttgggctt gagggtggaa ttcaaagaag aagtcgtaaa
     7201 aaaccaccta aaaaagttga gaaaaaagaa aatgaagcgg tttcgagcgt agaaatttca
     7261 aaagaaattc gtgtttatga atttgcagat aagataggca aaagcgtgag tgaagtgatt
     7321 tcaaaacttt tcatgctggg tatgatgaca actaaaaatg attttttaga tgaagatgcg
     7381 attga
//
LOCUS       DARAII010000090         7375 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.090, whole genome shotgun sequence.
ACCESSION   DARAII010000090 DARAII010000000
VERSION     DARAII010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7375
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.090"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..774)
                     /gene="rlmN"
                     /locus_tag="SB143_001478"
     CDS             complement(<1..774)
                     /gene="rlmN"
                     /locus_tag="SB143_001478"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEF9749996.1"
                     /translation="MKELINILDFLPEELEEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKDLRLELAQTYHFSPLKCVKNEQSKDGSIKYLFELIDGLRIESVLLPMKEEQFDE
                     EGKRISHTRYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILSQNDGLAISPRRQTISTSGLAKQIKELGEM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVRAF"
     gene            complement(794..1330)
                     /locus_tag="SB143_001479"
     CDS             complement(794..1330)
                     /locus_tag="SB143_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEF9749997.1"
                     /translation="MIVCAGGNENFSFAKTIGIGLVESTFHLTQLCLKEKPSKLIFIG
                     TCGLYDKGEILGIYKSSHACNIEFSYISDQFYTPANIEIKLNNQNVSRETIKVNSSNY
                     ICQNSKAAKEFAKLGFFAENMEAFSILSVAKNLDIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKINHYI"
     gene            1415..2209
                     /gene="rsmA"
                     /locus_tag="SB143_001480"
     CDS             1415..2209
                     /gene="rsmA"
                     /locus_tag="SB143_001480"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEF9749998.1"
                     /translation="MMKAKKHYGQNFLNDKSILSKIIQAIPKDTENIVEIGPGLGDLT
                     QELLKVSHVKAYEIDDDLIPILRKKFQKELDCGKLNLLHQDASKLACFDEKKYFLVAN
                     LPYYVASHLILQALEDKNCSGLIVMVQKEMALKFCAHSGESDFSALGVLSAMICEREI
                     LFDVEPECFNPPPKVVSAVMKMIKFRAYQDLCEIHAFKAFLKDCFKAPRKQLLGNLKI
                     HKAKLTELFQELKLNLNLRPHELCVDSYLKIYEKVKEEYERKQQRK"
     gene            2184..4214
                     /locus_tag="SB143_001481"
     CDS             2184..4214
                     /locus_tag="SB143_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEF9749999.1"
                     /translation="MNENNKGNSENTNNPNSNSKNNKRYKYRNRRKKLADSISENSQN
                     STHEFSNNEKINTKKNSTNTQPLEGENVEKPSEKKKKRNRNLPSKLTGNEDWQIALAE
                     CIEANRVSHENRLHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMS
                     FPDGTMHGVDIIIPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPL
                     ALGMISNKFEEHGLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKA
                     GTIIHTGDFKIDQTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGP
                     TFDQIFARTKGRVIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGY
                     IKLDRKIFIDADEVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPSDQIII
                     SAKAIPGNEASVSAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLVKPKFFL
                     PVHGEYNHINKHKETAIKCGIPEKNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQ
                     INKQIADDVVIDRQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKD
                     MAEVLGQFFINVKDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            4250..5011
                     /locus_tag="SB143_001482"
     CDS             4250..5011
                     /locus_tag="SB143_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEF9750000.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKYRYLENGEYEKLRDFLKFNEIRY"
     gene            5209..5520
                     /gene="rpsJ"
                     /locus_tag="SB143_001483"
     CDS             5209..5520
                     /gene="rpsJ"
                     /locus_tag="SB143_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEF9750001.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            5530..6105
                     /locus_tag="SB143_001484"
     CDS             5530..6105
                     /locus_tag="SB143_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEF9750002.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            6102..6716
                     /gene="rplD"
                     /locus_tag="SB143_001485"
     CDS             6102..6716
                     /gene="rplD"
                     /locus_tag="SB143_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEF9750003.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSALESITKEG"
     gene            6719..7000
                     /locus_tag="SB143_001486"
     CDS             6719..7000
                     /locus_tag="SB143_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEF9750004.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLESMEA"
     gene            7002..>7375
                     /locus_tag="SB143_001487"
     CDS             7002..>7375
                     /locus_tag="SB143_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEF9750005.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALISYKDGEKR
                     YILQPRGLSVGDIVAAAESGLD"
BASE COUNT         2701 a         1093 c         1368 g         2213 t
ORIGIN      
        1 aaaagcacgc acagcatcca tgatcgcagc tatattataa gctttattta taggcatgag
       61 ttcggttcgg agttcatcat taaccgcgtg aagggagatg gcaagcaaga cgcctaaatt
      121 catttcaccc agctctttga tttgctttgc taaaccactt gtgcttatgg tttgtctgcg
      181 agggctgata gcaagtccat cattttgaga gagaatttta actgccttgg aaacattttt
      241 aagattgtca agaggttctc ccatgcccat atagactata ttgacacgac gctcataggg
      301 gatattgttt tgttttttga tccataaaat ttgtccgact atctctcccg cgctcaaatt
      361 tctttttaag cctcctttgg cagtaaggca aaaactacag ccacttttac agcctacttg
      421 ggaagaaacg caaatagtat atcttgtatg tgaaattctt ttaccctctt cgtcaaattg
      481 ttcttctttc ataggcaaaa gtacactttc tatccttaag ccatcgataa gttcaaaaag
      541 atatttgata cttccatctt tgctttgttc atttttaacg catttaagag gagagaaatg
      601 gtaagtttgc gcaagttcta aacgcaaatc ttttggtaga cttgacatat cggaaaaatt
      661 atttgcatat ttttgatata tccattgata aatttgtttc acgcgaaaca taggcttgat
      721 tttttcttcc aattcttcag gtaaaaagtc taagatatta atgagttctt tcaagatcgc
      781 tttcctttga ttgctaaata taatgattaa tttttaaata ttcttctagt ttttcttttg
      841 ccttttgatg attttttata aaatcttcat gagcattttc attgcaaaaa ttagtcgcac
      901 ataaaatgca ttctgcatct atatctaaat ttttagccac gcttaaaatc gaaaaagctt
      961 ccatattttc agcaaaaaaa cctagttttg caaattcttt tgctgctttt gaattttgac
     1021 aaatataatt agaagaattg actttgattg tttcacgaga aacattttga ttgttgagtt
     1081 tgatttcaat gtttgcagga gtgtagaatt gatcagaaat ataagaaaat tcaatattac
     1141 aagcatgaga acttttataa attcctagaa tttctccttt atcgtaaagt ccacatgttc
     1201 ctataaatat aagttttgaa ggtttttctt ttaagcaaag ttgtgttaaa tgaaaggttg
     1261 attctaccaa acctatacct atggttttgg caaaagaaaa attttcattt ccacccgcac
     1321 aaactatcat tcacatatcc taaaaataat ttagcaagaa ttttagctaa aaaggcttaa
     1381 aattaagaat ttttagctaa aataaaaaac tattatgatg aaagcaaaaa aacattacgg
     1441 acaaaatttt ttaaacgata aaagtatttt atcaaaaatc atccaagcca tacccaaaga
     1501 tactgaaaat atagtagaga ttgggcctgg cttaggtgat ttgacgcaag agcttttaaa
     1561 agtttctcat gtaaaggctt atgagataga tgatgatctt atacctattt tgcgtaagaa
     1621 atttcaaaaa gaacttgatt gtggaaaatt aaatttgctt catcaagatg caagtaagct
     1681 cgcatgtttt gatgaaaaga agtatttttt ggtcgctaat ttaccttact atgtcgcaag
     1741 tcatttgatt ttgcaagcct tagaggataa aaattgctca ggtttgatag taatggttca
     1801 aaaagaaatg gcattgaaat tctgtgctca tagtggagaa agtgattttt cagctcttgg
     1861 agttttaagt gctatgattt gtgaacgaga aatactgttt gatgtagagc ctgaatgttt
     1921 taatccaccg ccaaaagtag tatcagcagt gatgaaaatg attaaattca gagcttatca
     1981 ggatctctgt gaaattcatg cttttaaagc ttttttgaaa gattgtttta aagcgccaag
     2041 aaaacaatta ttagggaatt taaaaattca taaagctaaa ttaacagagc tttttcaaga
     2101 gttaaaactc aatttaaatt tacgcccaca tgaactttgc gtcgattcat accttaaaat
     2161 ttacgaaaaa gtaaaggaag aatatgaacg aaaacaacaa aggaaatagt gaaaatacaa
     2221 acaatcctaa ctcaaattca aaaaacaaca agcgctataa atacagaaat cgtagaaaaa
     2281 aattagccga ttctatcagt gaaaattctc aaaattcaac tcatgaattt tctaacaatg
     2341 aaaagataaa taccaagaaa aattctacaa atactcaacc tttagagggt gaaaatgtag
     2401 aaaaaccaag tgagaaaaag aaaaaaagaa atcgcaatct cccttctaaa cttaccggaa
     2461 atgaagattg gcaaatcgcg cttgctgagt gtatagaggc aaatcgtgtt tcacatgaaa
     2521 atcgcttaca tcctttaaaa tacaataatt ctagcgagca taaaattcgc atcactcctt
     2581 taggaggttt aggagaaatt ggtggaaata tcagtgtttt tgaaaccaat aaagatgcaa
     2641 ttatagtaga tataggtatg agttttcctg atggaactat gcatggggta gatattatca
     2701 tccctgattt tgactatgta agaaagatta aagataaaat tcgtggtata gtgatcactc
     2761 atgcacacga agatcatatc ggtgcagtgc cttatttctt taaagaattc caatttccta
     2821 tctacgctac acctttggct ttaggaatga tttcaaacaa atttgaagaa catggcttaa
     2881 aagcagaacg caaatggttt cgccctgtag aaaaacgccg tgtttatgag ataggcgaat
     2941 ttgatataga gtggatccac atcacgcatt ctatcattga tgcttcagca cttgcgatca
     3001 aaacaaaagc aggaacgatt atccacacag gtgattttaa aattgatcaa actccaatcg
     3061 atggctatcc aacagactta ggacgtttgg cacattatgg agaagaaggg gttttatgtc
     3121 ttttaagcga tagtacaaat tcgtacaaag aaggttatac aaaaagtgaa agctccgtag
     3181 ggccaacttt tgatcaaatc tttgcacgta ccaaaggcag ggtgatcatg agtactttta
     3241 gctcaaacat ccaccgtgtt tatcaagcta ttacttatgg tttaaaatac ggcagaaaag
     3301 tttgtgttat cggtcgttct atggagagaa atctttatac cactatggaa ttaggttata
     3361 ttaagctcga tagaaaaatt tttattgatg cagatgaggt tagcaagtat aaagacaatg
     3421 aagtgcttat cgtaaccaca ggaagtcaag gtgaaactat gagtgcgctt tatagaatgg
     3481 caacagatga gcataaattt ataaaaataa agccaagcga tcaaatcatc atttcagcta
     3541 aagctatccc aggcaatgaa gcgagtgttt cagcggtgct tgattatctt ttaaaagcgg
     3601 gtgctaaagt agcgtatcag gaatttagcg aaattcatgt aagcgggcat gcaagtatag
     3661 aagagcaaaa attaatgctt actctagtta agcctaaatt cttcttgcca gtacatggag
     3721 aatacaatca tatcaataaa cacaaagaaa cagctataaa atgtggaatt cctgaaaaaa
     3781 atatttatct catgagcgat ggcgatcaag tagaactttg ccaaaaatat gttaaacgca
     3841 taaaaaccgt aaaaacaggt aaagtttttg tagataatca aatcaataaa caaatcgccg
     3901 atgatgtagt tatagatcgt caaaaacttg cagatagtgg tatagtagtt attatcgcac
     3961 aaattgacaa agctacaaaa acactgatca acaaaccaag agtatttagc tatgggctag
     4021 tagctgacaa acacgatcat gcttttagca aagatatggc tgaagtttta ggacaatttt
     4081 tcatcaatgt taaagatgaa gtactcaatg atccaagatt tttagaaaat caaattcgtc
     4141 aagtattgag aaaacatatt tttagaaaga ttaaaaaata tccaaccata gttccaacta
     4201 tttttgtaat gtaaaaaagg gcaaaaacgc cctttttaag gaagatcaaa tgagaattaa
     4261 taaatttata tcccataaca cccgctattc acgccgtgaa gccgatgaac ttatcaaaca
     4321 aggcttagta aaaataaaca acaaaattgc ccttttaagc gatgaagtta aatttgatga
     4381 taaagttttt gttaaaggta aaagagtaca aaaaagaacg caatttagcg tgataatcta
     4441 ccataaacaa aaaggtgaaa ttgtcagtaa aaaagacgat cgtggaagaa aaactatata
     4501 tgataccttg ccaagacaat ttagtacttg gcttagcgta ggtaggctgg attatgcaag
     4561 tgaaggctta cttttgctta cagattctcc tgtgattgcc gatgctttaa tgcatagcga
     4621 tttagaaaga gaatactacc ttaaagttaa aggcacagtg agcaaacaag tcatcgaagc
     4681 catgcaaaat ggacttgaga ttaaaaatga aaaaaaaggc gcacatgcaa aaactaaaat
     4741 tacctctatg agttttgctc cttttataga ctttgaaatt tttggatcaa gtggaggcta
     4801 tactaagctt agagtggtta taaatgaagg taaaaataga gagcttagac gcttttttgg
     4861 acattttgat cttgaagtca tggatcttaa gcgtgttgct tttggggctt tagatcttgg
     4921 tatgttgaag gcgggaaaat atcgttattt agaaaatggc gaatatgaaa aattaagaga
     4981 ttttttaaaa tttaatgaaa taagatattg accattatat acaaaaattt aaaaaataat
     5041 gataattttt aaattctaaa aattctattt ttatcctttt taaaaggaaa ataatagaaa
     5101 aatttcatca aattccttga ctttgaaaac aagattttat atactctcat ttcaattttt
     5161 ataaattggt tagtttttaa ctaacgagtt ctttttaaag gaaatattat ggaaagaatt
     5221 aggcttaagc taaaagctta tgaccatcga gtactagaca gaacagttgc agcaatcgta
     5281 gaagctgtta aaagaacagg tgcggatatc agaggtccga taccaatgcc tactaaaatc
     5341 aaacgctata cagttttaaa atctccacac attaacaaag attctcgtga gcagtttgaa
     5401 ataagaattc acgcgcgtat gctagatata gtagcagcga ctccagatac agttgattct
     5461 ttaactaagc ttgatttagc gccagaagta agcgttgaag taagagctat gggtaagtaa
     5521 ggataagata tggaatatat tgtagaaaaa attggaatga gcagaacaat tactaatcca
     5581 agtatcgctg taactttact aagagttgta aatgcaaaag tatgtgaagt tgaaggcgga
     5641 aaggctttag tagcatatcc aaaaggtaaa gcaagtaata aatgtgtcgc aggacaacaa
     5701 aaaaaataca atctttctgc agaatacaat agatttgcga ctttagaagt agcaaatact
     5761 gaagcaggag atttagatga aactccatta aatgaagcaa aaattttaaa agtaagcttt
     5821 aacactaaag gtagaggtta tagcggtgtt atgaaaagac ataacttcgc agggggtcca
     5881 gcaagtcatg gttcgagatt tcatagacgc cacggatcta ttggcaatag agaatggcca
     5941 ggtcgtgttc aaccaggtat gaaaatggca ggacactatg gaaatactaa agtgaccgtt
     6001 aaaaacgaag ttgtatctta tgatgctgaa aacaaaattt tagtagttaa aggtgcagta
     6061 ccaggttata atggtgctat gggtaaaata aggattgcaa aatgagtaaa gtagttgttt
     6121 taaatgataa attagaaaaa gcaggtgaac ttgatttacc ttcaaaatat gcggaagtaa
     6181 atccacacaa tctttactta tatgtaaaat cttaccttgc aagtttaaga gcaaatacag
     6241 ctcatactaa aggtagaagt gatgtaagtg gtggtggtaa aaaaccttgg agacaaaaag
     6301 gtcgtggcgg tgctagagcg ggttcaacaa gaactaacgt ttgggtaggc ggtgcggttg
     6361 cttttggtcc aacaaatgaa agaaactact tccaaaaagt aaataaaaaa caaaaaagat
     6421 tggcgcttga aagagcttta gcagataaag cagctaaggg agcattattt actgctgatt
     6481 ctttggctat tgaaagtggt aaaacaaaag atgcaaacgc tgtgattaaa aaacttggcg
     6541 tcaaagatgc tttaatcgtt aaagatttac tagatgaaaa aacactttta gcttacagaa
     6601 atttagcaaa ttgctatgta gttgatgtaa ctgaagtaaa tgcttattta gtatctgtat
     6661 ttaatgctgt tattatggaa aaatcagcgt tagaatctat tacaaaagag ggataattat
     6721 ggcagatatt actgatataa agactatact ttacacagaa aaaagtttga atttgcaaga
     6781 gcaaggtgtc gtagttattc aaacttcgcc aaaaatgact aaaacaggct taaaagcggt
     6841 tttaaaagag tattttggtg taactccaaa aagcatcaat tctttaagaa tggatggaaa
     6901 agttaagcgt tttagaggtc gtttaggtca aagaaacgat tataaaaaat tctatgttaa
     6961 gctacctgaa ggtgttagct tagaaagtat ggaggcttaa gatggcaatt aaaacttata
     7021 aaccatatac tccaagtaga agatatatta caggtttaag ctctgaagat attacagcaa
     7081 aaccaagtgt acgctcttta cttgtgaaac ttccagcaca cgcaggacgc aatagctacg
     7141 gaagaattac aagtcgtcat aaagaagcag gagcgaaaaa actttacaga attatcgatt
     7201 ttaaacgtcg caaatttggt atagaaggaa aagtagaagc gatcgaatac gatccatata
     7261 gaaattgtag aattgctttg atttcttata aagatggtga aaaaagatat attcttcaac
     7321 cacgcggact cagtgttggt gatatcgttg cagctgctga aagtggactt gatat
//
LOCUS       DARAII010000091         7338 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.091, whole genome shotgun sequence.
ACCESSION   DARAII010000091 DARAII010000000
VERSION     DARAII010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7338
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.091"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..908)
                     /locus_tag="SB143_001488"
     CDS             complement(<1..908)
                     /locus_tag="SB143_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrodipicolinate N-succinyltransferase
                     N-terminal domain-containing protein"
                     /protein_id="HEF9750006.1"
                     /translation="MINTKEDFLLLIKQIEQKNGYRKPKAFGIARLDRGQLNKNKILQ
                     ASFALVNYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     EGHQNIDLLKIIKDKFKDDEFAFVCLFEDKEPLSVESVYLKLYLLSTKKVPLRSINLN
                     GSFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSV"
     gene            complement(930..2036)
                     /locus_tag="SB143_001489"
     CDS             complement(930..2036)
                     /locus_tag="SB143_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEF9750007.1"
                     /translation="MKEQILEKLKSVKYPGFDKDIVSFNFVKDIKTENENVIVELEIV
                     SSNPQVSEELRKNIDEALASLNLKNLQIHIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILSHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEEMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSAKRYLMA
                     AEKIWQFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            2156..3271
                     /locus_tag="SB143_001490"
     CDS             2156..3271
                     /locus_tag="SB143_001490"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEF9750008.1"
                     /translation="MANLSLIMLAAGNSTRFDMGVKKQFLRLGDDPLWLYATRNLSTF
                     YPFKKIVVTSSNTSYMKKFARNYEFVEGGATRAESLKKALEIIDSEFVMVSDVARVLV
                     SKSLFDRLIENLDKADCITPALKVADTTLFENEALQREKIKLIQTPQISRTRLLKQAL
                     NQNLDFTDDSTAISAVGGKIWFVEGEENTRKITFKEDLKKLDLPRPSNEIFCGNGFDV
                     HEFGEERPLLLGGVEIHPTMGLKAHSDGDVLAHSLTDAILGAACLGDIGELFPDTDEK
                     FKNANSMNLLKEAYKRVKEFGFELVNIDICVMAQTPKLKDFKEAIAQNIANTLNVDEF
                     RVNIKATTTEKLGFIGRKEGMAVLASANLKYFDWTKI"
     gene            3268..4155
                     /locus_tag="SB143_001491"
     CDS             3268..4155
                     /locus_tag="SB143_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEF9750009.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDVGYSCEIINSFDERNPEKYYDI
                     VLLSTNTSNFLKAVMEFKHSIIILLISYISTDTVSNPLKLGACDYIQKPFMIEELIRK
                     IKHYQDFKKLSILNKAYKSYIKSRLQTVKIPEYNYKKLKLPVVLKSNKQSSADAFVFN
                     YINEYDITLSYVDLSVSNSVEKAMKLPTENNLLFLSNFQVLKPLEREKLLEFIKNKSV
                     ILHTNSNIEDLELPCINLSDNEKNIDSNQILTIDEYVKYIILNYQNVFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            4133..5293
                     /locus_tag="SB143_001492"
     CDS             4133..5293
                     /locus_tag="SB143_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEF9750010.1"
                     /translation="MKSAKKNKSIIIDKNELGILSLIKEGLLGSCTHLMDEHETKQIF
                     KTGKSNNESFPYPLSFAPKVSEEFIKDIRIGSKIDLILDDEIVGNITLKSKFKNDKNF
                     SNIFSPHTCSLDDMGEICIGGEIEIYNSTIQKIKEEFHKTKENLNAHKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVVFLVESFDANGFDFDLKQNYLKKFIQNYLPPDRIFIFP
                     LKDINLFHAHLNPSLESILAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYD
                     IEVIVLPEFVFCDACRMIVSTRSCPHGCHHHLHYNSQSLKELLRAGIVPPAVFMRKEV
                     SSIILSSIFPNRFKNLQKIYNDLFATDGILEYKSDEEFYQKLLETHQMSYMV"
     gene            5303..5803
                     /locus_tag="SB143_001493"
     CDS             5303..5803
                     /locus_tag="SB143_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEF9750011.1"
                     /translation="MQKLFLTFFYSGCAKKAPGTFGTLAALIPAFFILKYLGITTLFL
                     LSILIFIASIRVIDDYERKTGIHDDKHIVIDEVAGVFLACAIAASGANSLLNFFMAFV
                     FFRIFDITKPSIIGKIDKKTKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFDLVFWDK
                     DLINLF"
     gene            5880..6143
                     /gene="rpsT"
                     /locus_tag="SB143_001494"
     CDS             5880..6143
                     /gene="rpsT"
                     /locus_tag="SB143_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEF9750012.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAAKNDK
                     NAANEALKIANKSIHAMVSRGFLKKQTASRRVSRLALLVNKIA"
     gene            6160..7227
                     /gene="prfA"
                     /locus_tag="SB143_001495"
     CDS             6160..7227
                     /gene="prfA"
                     /locus_tag="SB143_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEF9750013.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDIISDISKMTALSKEQKNLEP
                     IVLKAKEYLKTLDSIEENKTLLNDAELGELAKEELKNLEELKPKLEEELKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGAGAFSRLKYEGGTHRVQRVPQTESQGRIHTSAITIAVMPEVDDIEIEINPNDL
                     KIDVMRSSGHGGQSVNTTDSAVRITHLPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAQESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAILQDGLF
                     DEVIEPLIAHYQAESLQEQNL"
     gene            complement(7258..>7338)
                     /locus_tag="SB143_001496"
     CDS             complement(7258..>7338)
                     /locus_tag="SB143_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEF9750014.1"
                     /translation="QAYDIENENVTHVGANSSPHKFPHKH"
BASE COUNT         2528 a         1231 c         1158 g         2421 t
ORIGIN      
        1 actgaattag cccctaaaag acaagccttg cctacgctta tagcattgcc acttgttcca
       61 cttaaaacac ctaaaataga agcaccaccg cccacatcag aaccttctcc tactatagca
      121 cttgaactaa tacgcccttc aaccatacaa gcccctgttg tacctgcatt aaaattcaca
      181 taacttgccc ctggcatgat ggttgttcct gctgctaaag acgcacccat tcttacttta
      241 gaactttcta aaattcttgt attatcctca gggataatat gtgctaaaaa tcttgggaat
      301 ttatctacaa aatcaatttt tggatattga ttgctcattt ttaaacgcat ttcatttgct
      361 cttaaatact caagctcgat aggcttatca tcactccaag ctacattgct taaaagtcca
      421 aaagatccat ttagattgat acttcttaaa ggcacttttt tagtagaaag caaataaagt
      481 tttagataaa cactttctac acttaaaggt tctttatctt caaaaagaca aacaaaagca
      541 aattcatcgt ctttaaattt atctttgata atctttaata aatcaatatt ttgatgtccc
      601 tcttcttcta aaaaaggttt aaaacaagaa agtgcaaaat caatatcttc taatttcaaa
      661 gtttgcacaa actcactcgc attaaaatca atctctacgc ccctttgcat aaaagcttca
      721 agcatgattg ccgctgagcc aaaattttgc tcataattta ccaaagcaaa actggcttgt
      781 aaaattttat ttttattaag ctgaccacga tcaagtcttg ctataccaaa agctttaggt
      841 tttctatatc catttttttg ttcaatttgt ttgattaaaa gtaaaaaatc ttctttagta
      901 ttaataatca ttttttctcc ttcaaaattt taatgcgaac aagcactttt tccattcatc
      961 acaggttgga ttgcagaatt atccgcaccg ccttcattat tgattttttc tataaattgc
     1021 caaatttttt cagctgccat taaataacgc tttgcactta cactttcagg atgataaaaa
     1081 ctcacaggtt ttccttcatc tccaccctct cttactatca tctctatagg aatttgtgct
     1141 aaaacttcac tcttataagc ttttgccatc tcctctgcag tgcctttacc aaaaatatca
     1201 tactctttgc cattatcagg acataaaaag ccactcatat tttctatcac gccagcgatt
     1261 ggaatgtgaa gtttgttaaa catatctaaa gctcttttgc tatcatctaa agaaacggtt
     1321 tgtggggtac ttacacaaac acccgcagta attggaatgc tttgtgctga agtaatttgc
     1381 gcatctcctg ttcctggagg catatctaaa aacaatacat caagttcagg ccaaatcaca
     1441 tctgcaagta attgctcgat agctttcatg atcatagctc cacgccacat aagcccttga
     1501 ccctcttcga ttaaaacccc catactcatc atataaacac catgacttaa aatcggcttt
     1561 aatctttgtc ctactacttc aggttgagtt ttagtttcac ctaacatcct tgggatattt
     1621 ggcccataaa tatctgcatc taaaatccct actctttttc ccattttagc catagaaata
     1681 gctaaattta cagtggttgt agacttacct actccgccct ttccgcttga aaccatgatg
     1741 aaatttttta cttgaggtgc gatattttta ccacttcttg aattgctttt ttcttcagga
     1801 atttttggag taatgatatg aatttgtaaa ttctttaaat ttaaagaagc taaagcctca
     1861 tcaatatttt tgcgtaattc ttcgcttact tgcggatttg atgaaacaat ttcaagctca
     1921 acgataacat tctcattttc ggtttttata tcttttacaa aattaaaact cactatatcc
     1981 ttatcaaaac ctggatattt tacacttttt aatttctcta aaatttgctc tttcatctct
     2041 tttccttaat ttttaaaaaa tcaattttac taataaaatg ataaaattta gctttttata
     2101 agtgtataat atggtaacat tatatataaa attaatatta tagcaaaggg aaaaaatggc
     2161 taatcttagc ttgattatgc tagcagctgg aaattctact cgctttgata tgggagtaaa
     2221 aaaacaattt ctacgccttg gcgacgatcc tttatggctt tatgctacgc gaaatttaag
     2281 cactttttat ccttttaaaa aaatagttgt tacttctagt aatacttctt atatgaaaaa
     2341 atttgctaga aattatgaat ttgttgaagg tggtgccact agggcagaat ccttaaaaaa
     2401 agccctagaa atcatagaca gtgaatttgt aatggtaagt gatgtagcaa gagttttagt
     2461 aagtaaaagc ttgtttgatc gtttgattga aaatttagat aaagctgatt gtatcactcc
     2521 ggctttaaaa gtcgcagata ccacgctttt tgaaaatgaa gccttgcaaa gagaaaaaat
     2581 caaactcatt caaactcctc aaatttcacg cactcgctta ctcaaacaag ccttaaatca
     2641 aaatttagat ttcacagatg atagcacagc tatatctgca gtgggtggaa aaatttggtt
     2701 tgttgagggt gaggaaaata ctagaaaaat aacctttaaa gaagatctta aaaagcttga
     2761 tttacctcga ccaagtaatg aaatcttttg cggaaatggt tttgatgttc atgaatttgg
     2821 agaagaacgc cccttgcttt taggtggagt tgaaattcat cctactatgg gcttaaaagc
     2881 acacagtgat ggagatgttt tagctcactc tttaaccgat gcgattttgg gtgctgcctg
     2941 tctaggagat ataggcgaac tttttcctga tacggatgaa aaatttaaaa atgcaaattc
     3001 tatgaatctt ttaaaagaag catataaaag agttaaggag tttggctttg aacttgtcaa
     3061 tatagatatt tgcgtgatgg cacaaactcc aaaacttaaa gattttaaag aagccatagc
     3121 tcaaaatata gcaaatactc ttaatgtcga tgaatttaga gtaaatatca aagctaccac
     3181 tactgaaaag ctaggtttta tagggcgtaa agaaggtatg gctgttttag caagcgcaaa
     3241 tttaaaatat tttgattgga cgaaaatatg aaagttttaa ttatagaaaa tgaaatttat
     3301 ctagctcaaa gcataagtat taagcttagt gatgtgggtt atagttgcga aattatcaat
     3361 tcttttgatg agcgtaaccc tgaaaaatat tatgatattg ttttactttc tactaatact
     3421 agtaattttt taaaagcggt tatggaattt aaacatagca ttattatttt acttatttct
     3481 tatatcagca cagacacagt ttcaaatcct ttaaaacttg gtgcgtgcga ttatatacaa
     3541 aaacctttta tgatagaaga attgatacga aaaatcaaac attatcaaga ttttaaaaag
     3601 ctctccattc ttaataaagc ttataaaagc tatattaaat caagacttca aacagttaaa
     3661 attccagaat acaactataa aaaactaaaa cttcctgttg ttttaaaatc caacaaacaa
     3721 agctcagctg atgcctttgt atttaattat atcaacgaat acgatatcac cctttcttat
     3781 gttgatctat ctgtgagtaa ttcagtagaa aaagcgatga aacttccaac ggaaaacaat
     3841 cttttattct tgagtaattt tcaagtttta aaaccactag agcgtgaaaa attgcttgaa
     3901 tttatcaaaa acaaatcagt tattttacat actaattcaa atatagaaga tttagagctt
     3961 ccgtgcatca atcttagtga taatgaaaaa aatatcgata gtaatcaaat tttaaccata
     4021 gatgaatatg ttaaatatat tattttaaat tatcaaaatg tctttcctga tacagatctt
     4081 tcaaagaaat taggaatttc tcgtaagtct ttatgggaga aaaggaaaaa atatgaaatc
     4141 agcaaaaaaa aataaaagca ttatcataga caaaaacgaa ctaggcattc tttctcttat
     4201 caaagagggt ttgcttggca gttgtactca tttaatggat gaacatgaga caaaacaaat
     4261 ttttaaaacg ggcaaatcca acaacgaaag ctttccttat cctctatcct ttgctccaaa
     4321 agtttcagaa gaatttatta aagatattcg cataggaagt aaaatcgacc tcattcttga
     4381 tgatgaaata gtaggaaata tcacgcttaa aagtaaattt aaaaatgata aaaatttttc
     4441 caatatcttt agcccacaca cctgctcttt agatgatatg ggtgaaattt gtatcggtgg
     4501 agagatagaa atttataatt ccacaatcca aaaaatcaaa gaagaatttc ataaaaccaa
     4561 agaaaatctt aatgctcata aaattaccgc tatagtttca agctttgatc ctttgcatag
     4621 agcgcatgaa agaatgtttc gctggactat agataaggcg gatttggttg ttgtttttct
     4681 tgtagaatct tttgatgcca atggctttga ttttgatttg aagcaaaatt atttgaaaaa
     4741 atttattcaa aattatttgc caccggatag aatttttatc ttcccactta aagatatcaa
     4801 tcttttccat gctcatttaa atcctagctt agaaagcatt ttggctaaga gtcttggatg
     4861 taccaaactt gtcgtagggc aaaatcacac aggacttgga atgttttatg atgataatca
     4921 gcctaaaacc atactggatg atttttctaa agattatgat atagaagtga ttgttttgcc
     4981 tgaatttgta ttttgcgatg catgtcgtat gatagtaagt actcgatctt gccctcatgg
     5041 atgccatcat catttacatt ataattctca atccttaaaa gaattgttaa gagcaggtat
     5101 tgtgcctcct gctgttttta tgcgaaaaga agtttcaagt attatcttat cttctatttt
     5161 tcctaatcga tttaagaatt tgcaaaaaat ctataatgat ctttttgcaa cagatggaat
     5221 tttagaatac aaaagcgatg aagaatttta tcaaaagctt ttagaaactc atcaaatgtc
     5281 ttatatggtt tgaaaggaaa caatgcaaaa acttttttta actttttttt attcagggtg
     5341 tgcaaaaaaa gcaccgggga cttttggaac tttagcagct ttaattcctg ctttttttat
     5401 attaaaatat ctaggaatca ctaccttatt tttactcagc attttaattt ttattgctag
     5461 tataagagtg attgatgatt atgaaagaaa aacagggatt cacgatgata aacatatagt
     5521 aattgatgaa gttgcaggag tttttctagc gtgtgccatc gctgcaagcg gcgctaattc
     5581 tttactgaat ttttttatgg ccttcgtgtt ttttcgcatc tttgatatca caaagccttc
     5641 tatcatagga aaaatcgata aaaaaaccaa aggtggattg ggtgttatgc tagatgatat
     5701 gctagcagga ttgtttgcag ggcttttaag tgcagtgatt tatggttttt tgcttaaatt
     5761 tgatttagtc ttttgggata aagacttgat aaatttattt tgaaattttg cttaaattaa
     5821 tatattttta aattttattc ttatataatt tagtctttaa tttcaaaaaa ggaaaataaa
     5881 tggcaaacca caaatctgct gaaaaaagag caagacaaac tatcaaaaaa acagaaagaa
     5941 atagatttta tagaacaaga cttaaaaaca tcactaaagc cgtaagagaa gctgctgcta
     6001 aaaacgataa aaacgctgct aatgaagctt taaaaattgc aaacaaaagc attcacgcta
     6061 tggtaagtcg tggctttctt aaaaaacaaa cagcgtctcg tcgtgtaagt cgcctagctc
     6121 ttctagtaaa taaaattgca taatctttca taatttttaa tgttagctag taaactagat
     6181 ccttttttaa aacgctttga agagttaaat tctcttctta gtagttctga tatcatcagt
     6241 gatatcagta aaatgactgc gctttctaaa gagcaaaaga atttagaacc catcgtctta
     6301 aaagctaaag aatacctaaa aactctagat agcatagaag aaaacaaaac tttgcttaat
     6361 gatgctgagc ttggagaact tgcaaaagaa gagttaaaaa atttagaaga attaaaaccc
     6421 aaactcgaag aagagcttaa aattttgcta ttacccaaag atccgaatga tgaaagaaat
     6481 atttttcttg aaattcgtgc aggaacaggc ggagatgaag cttctttatt tgtaggcgat
     6541 cttgttaaag cctatgcaag atatgctgaa aatcgtggct ataaacttga aatcgttagt
     6601 tctagcgaag gaagtgtggg cggttttaaa gaaattatca tgctagttaa aggtgcagga
     6661 gctttctcaa gacttaaata tgagggtgga acacatcgcg ttcaacgcgt tccacaaacc
     6721 gaatctcaag gacgcataca cacttctgct ataactatag cggttatgcc tgaagtagac
     6781 gatatagaga tagaaatcaa tcccaatgat cttaaaatag atgttatgcg ctcttcagga
     6841 cacggggggc aaagtgtaaa tactacagat tctgctgtga ggatcactca ccttcctaca
     6901 ggtatagttg tagtcaatca agatggaaaa agccagcata aaaataaaga aagtgctatg
     6961 aaagtcttaa aagcaagact ttacgaaatg caagaaagcg agcgtttggc tcaagaaagc
     7021 gaagcaagaa aatcccaagt aggaagcggc gatagaagtg agcgcatacg cacttataat
     7081 tttccacaaa atcgtatcag cgaccatcgc atcaatctta ccctatatcg tttagatgct
     7141 attttacaag atgggctttt tgatgaagtt atcgaacctt tgatagcaca ttatcaagca
     7201 gaatcattac aagagcaaaa tttatagttt cattagtctt gaaaacaaga ctaatgatta
     7261 gtgtttatgc gggaatttgt gcgggctgct atttgcacca acatgggtta cattttcatt
     7321 ttctatatca taagcttg
//
LOCUS       DARAII010000092         7305 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.092, whole genome shotgun sequence.
ACCESSION   DARAII010000092 DARAII010000000
VERSION     DARAII010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7305
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.092"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1294
                     /locus_tag="SB143_001497"
     CDS             <1..1294
                     /locus_tag="SB143_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEF9750015.1"
                     /translation="PYATGADKLLEVQQRLKTFVDKGNLGPFANAYYGHPTYRLTPEQ
                     NLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQSLTVGGVTCVMDLLSPARMGEYMEK
                     FKEVQDFVNRAYYPDLVMAGKAYADEPSVLNDIGVNNLYTFQEFQLGRDEWLFESGII
                     KNGDLSKVYEVEEDKITEEATHSWYADNEPLHPYEGKTNPNYTGLVEGESVDHHGNTV
                     HSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIVVNYAKGNQNVVPVVDEFLKETGLPL
                     NAVFSTLGRTAARCLEAKIVANNALKAFRNLVENLKVDESTCAPYVIDNSKEYKGRYM
                     GHVPRGTLSHWCRIKNGVIENWQAVVPSTWNASPKDANGVGGSYEQCLIGLKIADVKQ
                     PLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYKVNASL"
     gene            1306..1998
                     /gene="cybH"
                     /locus_tag="SB143_001498"
     CDS             1306..1998
                     /gene="cybH"
                     /locus_tag="SB143_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEF9750016.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAFAIVVLVITGYYLSYV
                     FQNPISNGEPVNFMQAKYRMVHQAVGFVLIACVIFKVYLFFFDRISRKERISIVDALN
                     PKLWIEQIKFYLFLGKHPHLKGVYNPLQFVTYIFFYIVMVGIILTGLILYTHTYHEGL
                     GGLLYEVLRPLEAALGGLADVRTYHRILMWVILIFVPVHIYMAFFNAIKGKDGAIDAI
                     VSGYKFVKEEKN"
     gene            1995..2528
                     /locus_tag="SB143_001499"
     CDS             1995..2528
                     /locus_tag="SB143_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEF9750017.1"
                     /translation="MKFLVLGIGNIMFADEGIGVHLCKLLEKNYKFTHSNHSLDFVDG
                     GTLALQLSYIIAEYDKMIVLDCIDADDSKIGDVFFFPYDAMPKKINWSGSAHEVEMLQ
                     TLQYMELMGDLPHTQILACVPKRIKPMSFTLSQEIVSAGEIMEKTLLEYLTKEGFSYE
                     KIANHSLQELADISYKN"
     gene            complement(2530..3105)
                     /gene="recR"
                     /locus_tag="SB143_001500"
     CDS             complement(2530..3105)
                     /gene="recR"
                     /locus_tag="SB143_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEF9750018.1"
                     /translation="MTHKGIEKFNELVESFAKLPTIGKKTAIRLAYHICTGNQLEGMK
                     LAHNIENAIRFIKPCQQCGSLSENELCEICTDDERDKNCLCIVQSPKDVLVIEESKSY
                     GGLYFVLDELNDEKLAQLRQMILKLQSKELIFAFTHNLNSDAMIFYIEDRLKDLNLQF
                     SKIAQGIPSGVNLENVDFISLNKAINFRTKV"
     gene            complement(3095..4345)
                     /locus_tag="SB143_001501"
     CDS             complement(3095..4345)
                     /locus_tag="SB143_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEF9750019.1"
                     /translation="MTRNYSIYTKLVILFVVTFFLVCVLFIVLLKIESNTYSEEEGFK
                     QESFIKNIINSYGNASGVDIGAHLNNNGFVAIQNDYFVKIARLEGQSLFRAGNGENAC
                     TLTSLKYQNKLYLDVQCKDFSALFEEDTNNRVYNLLLIGFFFFSFLVVFMYFSVLKSL
                     EPLKKLRKQVAEVANGGKADFENYQEDEVGKIALEFQKAFKKNQELIQSRQLFLRTIM
                     HELKTPIGKGRIISEMLQEEKQKERLIDIFLRMDSLINEFAKIENLFSKNYNLQFKPV
                     HFSTILNEAKDYLMRDDFNRVVKLNLKHDALINVDMEIFPLILKNLIDNALKYSSNGT
                     CELYCCKEYFVIKNPGNPLREPIEHYFEAFTREPYQKVKGMGLGLYIVFEVCKLHNFD
                     IIYFYEEGKHCFKIFFGVKTNNDA"
     gene            complement(4342..5013)
                     /locus_tag="SB143_001502"
     CDS             complement(4342..5013)
                     /locus_tag="SB143_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEF9750020.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLTQFNIKITNFENPKEALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKYNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMHARIMSLIRRTKRAENTNNENINSAFKIDERKHEITYQNKVLTLTPAEYEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRTKINDSSKAPKHIFSVRGIG
                     YKLIG"
     gene            5160..6284
                     /gene="dnaJ"
                     /locus_tag="SB143_001503"
     CDS             5160..6284
                     /gene="dnaJ"
                     /locus_tag="SB143_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEF9750021.1"
                     /translation="MELSYYEILEITQSADKDTIKKAYRKMALKYHPDRNQGDKEAED
                     KFKLVNEAYEVLSNEEKRAIYDRYGKDALKSGGFGSGGAGFGGFEDLGDIFSSIFGGG
                     FGGASQRRKKSSDEKFQAELVVNLKLSFKEAVFGCKKNIDFTYKSSCKTCSGTGAKDG
                     KLQTCPKCKGRGQVGISQGFITFAQTCPDCKGSGESASEKCKDCKGRGYEELKDSVEV
                     NIPEGIDNGMNLRVAAKGNLSKSGDRGDLYVKVIVEEDDTFIRDDEDIYIEFPVFFTQ
                     AILGQSIKVPTIRGEATLNLPKGAKDGQRFVLEREGVKDVHSSRIGNQIVQIAIKFPN
                     SLNDEQKELLEKLSESFGIKDGMHHEQKGLFEKITHWFKS"
     gene            complement(6424..>7305)
                     /gene="porA"
                     /locus_tag="SB143_001504"
     CDS             complement(6424..>7305)
                     /gene="porA"
                     /locus_tag="SB143_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 3 major outer membrane porin protein PorA"
                     /protein_id="HEF9750022.1"
                     /translation="NTIWTDNAIDGLVGTGIKVVNNSIDGLTLAAFAIDSVNTDEQGD
                     GVFFKNSNLTDAGDNSPYLDWSQNIYGAAAIGSYEVFNGQLNPQLWLAYMTDNAFLYA
                     LDVAYNTTIFDGVNWTLEGAYLGNSLDNTLDDYYAGGSANGNFFGLRGSVEVNGWDAT
                     LGGLYYGKKDKVTVTVLEDQGNIGSLLAGEEIFYTNGSKLNGDTGRNIFGYVKAGYTF
                     NETVRVGADFVYGGTKTESNTYVGGGDKLEAVARVSYKYSPKLNFSAWYSYVNVDSDN
                     NGEGDHNAVRLQALYKF"
BASE COUNT         2395 a         1107 c         1343 g         2460 t
ORIGIN      
        1 gccttatgca acaggagcag ataaacttct tgaagtgcaa caaagactta aaacttttgt
       61 agataaagga aatttaggac cttttgcaaa tgcttattat ggtcatccta cttatcgctt
      121 aactccagag caaaatttga tcgttttatc gcattattta gagtgtttaa gaattcaaag
      181 aatcatagct caatgtatgg ctatttttgg tgctaaaaat ccacatccac aaagcttaac
      241 tgtgggcggt gtaacttgcg ttatggattt gctaagccct gctagaatgg gtgaatatat
      301 ggaaaaattc aaagaagtgc aagactttgt taatcgtgcg tattatcctg atcttgttat
      361 ggcgggaaaa gcttatgcag atgaacctag tgtgctaaat gatattgggg taaacaatct
      421 ttacactttc caagaattcc agcttggtag agatgagtgg ctatttgaaa gcggaatcat
      481 caaaaatggc gatttaagca aggtatatga agtagaagaa gataagatca ctgaagaagc
      541 gacccattct tggtatgcag ataatgagcc tttgcatcct tatgagggta aaacaaatcc
      601 aaattataca gggcttgtag agggtgaaag tgtagatcat catggaaata cagtgcattc
      661 taaggtattt gatactaagg gtaaatatag ctggattaag gctccacgct atgaaggaaa
      721 tcctatgcaa gtaggacctt tggctaatat cgttgtaaat tatgctaagg gtaatcaaaa
      781 tgttgttcct gtggtagatg agtttttaaa agaaacagga cttcctttaa atgctgtatt
      841 tagcactctt ggaagaactg ctgcgcgttg tttggaagca aaaattgtgg ctaataatgc
      901 tttaaaagcc ttccgtaatt tagtagaaaa tttaaaagta gatgagagca cttgtgcgcc
      961 ttatgtgatc gataattcta aagagtacaa aggacgctat atggggcatg tgccacgcgg
     1021 aacgctaagt cattggtgca ggattaaaaa tggagtgata gaaaattggc aagcagttgt
     1081 tccttctact tggaatgcaa gtccaaaaga tgctaatggt gtgggcggaa gctatgagca
     1141 atgtttgata ggattaaaaa ttgctgatgt aaaacaacca cttgaaatca ttagaaaaat
     1201 tcactcttat gatccttgta ttgcttgtgc ggtgcatgta atggatacta agggaaataa
     1261 tctaagcgaa tataaagtaa acgcgagttt ataaaagggg cttttatgca aaataaagaa
     1321 gaaaaattgc aaagaaaggc tgaatatgaa tttagcatag gtttgcgttt aacacattgg
     1381 gtaagagctt ttgctatagt ggttttggtt ataacaggat attatctttc ttatgttttt
     1441 caaaatccta taagcaatgg tgagccagtt aatttcatgc aagcaaaata cagaatggtg
     1501 catcaagccg tcggttttgt tttgattgct tgtgtgattt ttaaagttta tcttttcttt
     1561 tttgatagga taagtcgtaa ggagcgtatc agcatagtag atgcacttaa tccaaaatta
     1621 tggatagagc agattaaatt ttatctattt ttaggtaagc atccacatct aaaaggtgtt
     1681 tataatcctt tgcagtttgt aacctatata tttttctata ttgttatggt ggggattatt
     1741 ttaacaggat tgattcttta tactcatact taccatgagg gtttgggagg attgttgtat
     1801 gaagtgttaa gacctttaga agccgcactt ggaggcttgg ctgatgttag aacttatcat
     1861 agaattttaa tgtgggttat tttaatcttc gtacccgttc atatctacat ggcatttttc
     1921 aatgcgatca aaggtaaaga tggtgcgatt gatgctatag ttagcggtta taaatttgtt
     1981 aaagaagaga aaaattgaaa tttcttgtcc ttggtatagg aaatattatg tttgcagatg
     2041 aaggcatagg cgttcatctt tgcaaacttt tagaaaaaaa ttataaattc actcattcaa
     2101 atcacagctt agattttgtc gatggaggca ccttggcctt gcaacttagc tatattatcg
     2161 cagagtatga taagatgata gtgcttgatt gtatagatgc agatgattca aaaatcggcg
     2221 atgtattttt ctttccttat gatgcaatgc ctaaaaagat caattggagt ggtagtgcgc
     2281 acgaagtaga aatgcttcaa accttacaat atatggagct aatgggagat ttgcctcata
     2341 cacaaatttt agcttgtgtt ccaaagcgta tcaagcctat gagttttact ctatcgcaag
     2401 agattgttag cgcgggtgaa attatggaaa aaactttgct tgagtattta actaaagagg
     2461 gttttagtta tgaaaaaata gcaaatcatt ctttgcagga attagctgac atttcttaca
     2521 aaaactgatt taaactttgg tgcgaaaatt gatggctttg tttagagata taaagtcaac
     2581 attttctaaa tttactccac ttggaatacc ttgtgcgatt ttgctaaatt gtaaatttaa
     2641 atctttaagc ctatcttcta tataaaaaat cattgcatcg gaatttaaat tatgagtgaa
     2701 agcaaaaatg agttctttgc tttgtaattt tagtatcatt tgtcttaatt gagcaagctt
     2761 ttcatcgttt aattcatcta aaacaaaata caagccccca taacttttac tctcttctat
     2821 aaccaaaaca tctttagggc tttgcactat acataagcaa tttttatccc tttcatcatc
     2881 ggtgcaaatt tcacaaagtt cgttttcgct taaagacccg cattgttgac agggttttat
     2941 aaagcgtata gcattttcta tattgtgtgc gagcttcata ccttcgagtt gatttcctgt
     3001 gcaaatatga taagcaaggc gaatagcagt ttttttaccg atagtgggta attttgcaaa
     3061 actttctaca agttcgttaa atttttctat acccttatgc gtcattgttt gtttttactc
     3121 cgaaaaaaat tttaaaacaa tgcttacctt cttcgtaaaa ataaataata tcaaaattat
     3181 gtagtttgca tacttcaaaa acgatataaa gtcctaagcc catacctttg actttctgat
     3241 atggttcgcg tgtaaaagcc tcaaaataat gctctatagg ttctcttaat ggattgccag
     3301 gattttttat cacaaaatat tctttacagc aataaagctc acaagttcca ttgctagaat
     3361 attttaaagc attatcaatg agatttttta aaatcaaagg aaaaatttcc atatctacat
     3421 taatcaaggc atcgtgtttt aaattgagct tgacgactct attaaaatca tcacgcatca
     3481 aataatcttt agcttcattg agtatggtgc taaaatgcac aggtttaaac tgaagattgt
     3541 agttttttga aaaaagattt tcaattttgg caaattcatt aatcaacgaa tccattctta
     3601 aaaaaatatc gatcaatctt tctttctgct tttcttcttg cagcatttca gatataatcc
     3661 taccttttcc aataggcgtt ttaagctcat gcatgatggt gcgtagaaaa agttgtcttg
     3721 attgtatgag ttcttgattt ttcttaaaag ctttttgaaa ttcaagggct attttaccta
     3781 cttcatcttc ttgataattc tcaaaatcag cttttccgcc attagccact tctgcgacct
     3841 gttttcttaa ttttttaagt ggttcaaggg attttaatac tgaaaaatac ataaaaacaa
     3901 ccaaaaaaga aaaaaagaaa aagcctatca acaaaagatt ataaactcta ttgttagtat
     3961 cttcttcaaa taaagcgcta aagtctttgc attggacatc aagatagagt ttgttttgat
     4021 attttaaaga ggtgagagtg caggcatttt ctccatttcc tgcgcgaaaa aggctttgtc
     4081 cttctagtct tgcgattttt acaaaataat cattttgtat agcaacaaag ccgttattgt
     4141 taagatgagc tcctatatcc actccagaag cattgccata agaattgatg atatttttta
     4201 taaaactttc ttgtttaaaa ccttcttctt cgctgtaggt attgctttct atttttaaaa
     4261 gcacgataaa taaaacgcaa accaaaaaga aagttacaac aaataaaata acaagtttgg
     4321 tataaataga ataatttcta gtcatcctat aagtttatat cctatacctc taactgaaaa
     4381 tatatgtttt ggagctttag agctatcatt tatcttagtt cttaagcgac cgatgataac
     4441 atcaaggctt ttagaatctt tatctttaag atttttacag cgacttacaa gctgttctct
     4501 agatacacta tagccgtgtt gctggatgag atattctaaa atttcatatt ccgcaggggt
     4561 tagagttaag actttgtttt gataagtgat ttcgtgtttt ctttcatcga ttttaaaagc
     4621 tgaattgata ttttcattgt tggtattttc agctcttttt gtgcgacgaa taagactcat
     4681 gattcttgcg tgcatttctt ttggatcgta aggttttggt aaataatcat ccgcgccaat
     4741 ttggagccct acaaccttat cgcttaaatc tcctctagca gatgaaatga tgataggaat
     4801 attgtatttt tgtctgattt ctctacaaac ttcaaggcca tcaattccag gtaaggttaa
     4861 atctaaaatt aaacaatcat agccttgtat acctacattt aaagcttctt taggattttc
     4921 aaaatttgtg attttgatat taaattgagt taaatattct gacaataatt gggcaaaatc
     4981 aggatcatct tctatcatca acacattaat cattttgtta tcctttatta tttatggtaa
     5041 gatttatata tttacataat tttatttaaa ttttgataaa ttattgagtt tatttttgct
     5101 aaaattatat tttttatttt tacaaatttt ataaatattt tattatttaa aggaaaaata
     5161 tggagttaag ctactatgaa attttagaaa ttactcagag tgctgataaa gataccatta
     5221 aaaaagctta tagaaaaatg gctttaaaat accaccccga tagaaatcaa ggagataaag
     5281 aagctgaaga taaattcaag cttgtaaatg aagcttatga agttttaagc aatgaagaaa
     5341 aacgcgctat ttatgataga tatggtaaag atgctttaaa gagtggcggt tttggatcag
     5401 ggggagcagg ttttggtggc tttgaggatt tgggtgatat tttttctagt atttttggtg
     5461 gcggttttgg tggagcatcg caacgccgca aaaaatcaag cgatgaaaaa tttcaagccg
     5521 aacttgtagt aaatttaaaa cttagtttta aagaagcggt atttggctgt aaaaaaaata
     5581 tagattttac ttacaaatct tcatgtaaaa cttgtagcgg aacaggagct aaggatggaa
     5641 aacttcaaac ttgtccaaaa tgtaagggca ggggacaagt aggaatttct caaggtttta
     5701 tcacttttgc gcaaacttgt cctgattgta aggggagtgg agaaagtgca agtgagaaat
     5761 gtaaagattg taagggtagg ggctatgaag agcttaagga tagtgtagaa gtaaacatcc
     5821 ctgaaggtat agacaatggg atgaatttaa gagtcgcagc taaaggcaat cttagcaaaa
     5881 gtggcgatag gggggatttg tatgttaaag ttatcgttga agaggatgat acttttataa
     5941 gagatgatga ggatatttat atagaatttc cggtattttt tacccaagct atattaggac
     6001 aaagtataaa ggtgcctact atacgagggg aagcgacttt aaatttgcca aagggtgcaa
     6061 aggatgggca aagatttgtg cttgaaagag agggtgtaaa agatgtgcat agctctcgca
     6121 taggcaatca aatcgtacaa attgctatca aatttccaaa ttcactcaat gatgagcaaa
     6181 aagaactttt agaaaaactc agcgaaagtt ttgggataaa agatggtatg catcatgaac
     6241 aaaaaggatt gtttgaaaaa ataacccatt ggtttaaatc ttaattttct tcaagctttt
     6301 tagcttggga aaatttcttt gaatttaagt tagaaagata ttttatataa atttaagttt
     6361 taaaaataag gcataaaaaa aggtggagta aaactccacc ttgaacttag actttagagc
     6421 ttcttagaat ttgtaaagag cttgaagtct tacagcgttg tgatcacctt ctccattatt
     6481 gtcactatca acatttacat aagaatacca tgctgagaag ttaagttttg gagagtattt
     6541 atagcttact cttgcaactg cttcaagttt atctccacca cctacataag tattgctttc
     6601 tgttttggtt ccaccgtata cgaagtcagc acctacacga actgtttcgt tgaaagtata
     6661 acctgcttta acataaccga agatatttct accagtgtca ccatttagtt ttgaaccatt
     6721 tgtatagaaa atttcctcac ctgcaagtaa agagccgata tttccttgat cttctaatac
     6781 agttacagta actttatctt ttttaccgta gtataaacca ccaagagttg catcccaacc
     6841 atttacttca acgctacctc ttaaaccaaa gaagttgcca tttgcactac caccagcata
     6901 gtaatcatca agtgtgttat caaggctgtt tcctaaataa gcaccttcaa gagtccagtt
     6961 tactccatcg aaaatagtgg tgttataagc tacatctaag gcatataaga aagcattgtc
     7021 agtcatataa gctaaccata attgtgggtt taattgacca ttaaatactt cgtaagaacc
     7081 gatagctgca gcaccataaa tattttggct ccaatctaaa tatggagagt tatcgccagc
     7141 atcagttaaa ttactatttt taaagaatac accatcgcct tgctcatcag tgtttacact
     7201 gtcaatagca aaagcagcta gagttaaacc atcaatgctg ttgtttacta ctttgatacc
     7261 tgttcctact aaaccatcga ttgcattgtc agtccagata gtgtt
//
LOCUS       DARAII010000093         6941 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.093, whole genome shotgun sequence.
ACCESSION   DARAII010000093 DARAII010000000
VERSION     DARAII010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6941
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.093"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1074)
                     /gene="aroA"
                     /locus_tag="SB143_001505"
     CDS             complement(<1..1074)
                     /gene="aroA"
                     /locus_tag="SB143_001505"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEF9750023.1"
                     /translation="MKINALESFNTEISDIAADKSISHRFAIFSLLTQSENRAKNYLL
                     AEDTLNTLKIIENLGAKVKREGSSVSIMPPSEILSPNCVLECGNSGTAMRLMIGFLAG
                     VSGFFVLSGDKYLNNRPMKRICKPLSEIGAKIYGREQANLAPLCIEGQKLKAFDYKSE
                     ISSAQVKTAMILSAFRADKTSNFSEISLSRNHSENMLKAMNAPLKISDDYLSLEISPL
                     NQALKAQDILIPNDPSSAFYFALAAIILPNSKVVLKNILLNPTRIEAYKILQKMGAKL
                     EIKITQNDFETIGEIHASSSELKAVEVKENIAWLIDEAPALAIAFALAKGKSKLINAK
                     ELRVKESDRIAATVENLKLCGVNA"
     gene            complement(1071..3392)
                     /locus_tag="SB143_001506"
     CDS             complement(1071..3392)
                     /locus_tag="SB143_001506"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEF9750024.1"
                     /translation="MIITKSWLSDWLDFKDKSLDDIAHTLNSIGIEVDKICTLKVPDK
                     IVVGFVKEKVKHENSDKLSICQVDVGNEILQIVCGAQNVAQGQFVAVALKGALMPNGM
                     EIKEAKLRGVDSCGMLCSSTELGFEKINDGIMLLDDSIGKLELGKALNSYEIFNDGLI
                     EVELTPNRGDCLSIYGIARDLAVALNLNLKEKPPFKEGENVLGIGRILRLSAEKELNS
                     LYNYRAIKLKEKIQTNLLISLRLAQIENFGKNPIENLLNYATHSTGVLFNAYDLNSFY
                     KENEEFTFSLVKETRGETKISYQDELLSVSGIYQEEKFKCKEDSKIIIIEANYTDPMI
                     IADAKMAYKKQDEQTIYRSFRGSEPKLNLGMDFLLSVLEQNPNLIIYSSSQQIITNKE
                     LSNIAISIESINKTIGQEIDKDEVLKILKKLGFELIISADGLVNVKAPMHRPDIKNLA
                     DICEEVVRIIGIDNIASKGLEFVEKNRLNSTYKNYKELVELRKKAVANGYFESLHYVL
                     DNEEELKSLGFNPIKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     VVFGTNNEELNHIAFVHSGYQEEPKISNKAKPELVNFYDFLLDLKNIIGDFKLKASKH
                     DILSPYEQADIYLKDLKIGFAGRLHLKIENERDLLKTYICELDLNLIKHHFKLAKPYS
                     KFPSISRDLSILIPKGFEYEKIKNCIEELDLENLENFRLVDLYSDASLENSYSLTLKF
                     VFRDMNKTLEEAQVAEHMDKILQSFKEMGLELR"
     gene            complement(3389..4381)
                     /gene="pheS"
                     /locus_tag="SB143_001507"
     CDS             complement(3389..4381)
                     /gene="pheS"
                     /locus_tag="SB143_001507"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEF9750025.1"
                     /translation="MQNFIEQIQECKNLNDLEALRVAVLGKKGILTESFAKLKDLAGE
                     EKKEFAAKLNSQKDAFNEAYLSKFKILENLALEEKMKQDALDFNYFDESPTNGALHPV
                     MSTMDRIIEYFVNLNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQRVSFANL
                     KSILEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGCGCRVCKQTGWLEVLG
                     CGVVDPNVFNFVGYKDVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            4502..4867
                     /locus_tag="SB143_001508"
     CDS             4502..4867
                     /locus_tag="SB143_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEF9750026.1"
                     /translation="MKEKTVFELIVEGKIPCNKVLENNDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPKLMEKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFRLPKEKDENENPQALF"
     gene            complement(4906..5475)
                     /locus_tag="SB143_001509"
     CDS             complement(4906..5475)
                     /locus_tag="SB143_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEF9750027.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAAELSGNLEVIIASLDN
                     ELLVKGANGISIKADCSLEAVDTKNLDAIALAGGFDGMNNLKNSNEILSIIKKLHSEG
                     KIVSAICASPIVLNAAGVLEGEFTCYPSCETGLQGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKQLCGDEIYNSLYEGLLIPLTK"
     gene            complement(5468..5608)
                     /locus_tag="SB143_001510"
     CDS             complement(5468..5608)
                     /locus_tag="SB143_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750028.1"
                     /translation="MIVLDFILVVAFVLFMIFLIVGFNRQMSEKAKIREEKFKNKERK
                     NE"
     gene            5719..6462
                     /locus_tag="SB143_001511"
     CDS             5719..6462
                     /locus_tag="SB143_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEF9750029.1"
                     /translation="MNQKNIRIFVFFAIILFWGYFSFPIEILQIKEADGAINYGYTPN
                     AQAYIKSYFITLLLTACSAIIGVVVGFSLAILHFSKIKVLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAIFALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPL
                     IFTGLVYYVSVKIFSYFAKKLELRMSKND"
     gene            6455..>6941
                     /locus_tag="SB143_001512"
     CDS             6455..>6941
                     /locus_tag="SB143_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEF9750030.1"
                     /translation="MIEIKNLNKKYGNLEVIKNISTKISKGDIISIIGPSGGGKSTFL
                     RCINRLELADSGEILIKGRNILDEQTDINKIRQKVSMVFQHFNLFANKNVLQNLCLAP
                     VKTGILSEDEAINKAEILLKKVGLSDKKEVMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DE"
BASE COUNT         2337 a         1180 c          936 g         2488 t
ORIGIN      
        1 agcatttact ccacaaagtt ttaaattttc aaccgtagca gcaattctat cgctttcttt
       61 tacccgaagt tctttggcat tgatgagttt agatttaccc tttgctaaag caaatgctat
      121 agctaaagcg ggtgcttcat ctataagcca agctatattt tctttaactt ctactgcttt
      181 taactcgctt gagcttgcat gaatttcgcc tatggtttca aaatcatttt gtgtaatttt
      241 tatttcaagt tttgcaccca ttttttgcaa aattttgtaa gcctcaatac gtgtaggatt
      301 gagtaaaata ttttttaaaa ctactttaga attaggtaaa ataatcgcag ctaaagcaaa
      361 ataaaaagcc gaagaaggat cgttaggtat aagaatatct tgagctttta aagcttgatt
      421 taaaggagaa atttcaaggc ttaaataatc atcactgatt tttaaaggcg cattcatagc
      481 ttttagcatg ttttcactat gatttctact taaagatatc tcgctaaaat tggaagtttt
      541 atccgctcta aaagcagata aaatcatagc tgttttaact tgagctgaag aaatttcact
      601 tttataatca aaagctttta gtttttgtcc ttctatacaa agtggagcta aatttgcttg
      661 ttctctgccg taaatttttg caccaatttc acttaaaggt ttacaaattc ttttcatggg
      721 gcgattgtta agatatttat cgccacttaa aacaaaaaag cctgaaacac ccgctaaaaa
      781 tcctatcatc aaacgcattg cagtgcctga atttccgcat tctaaaacac aattaggaga
      841 aagtatctca ctaggcggca taatacttac actagaacct tctcgcttta ctttagctcc
      901 taaattttct attattttca gagtatttaa agtatcttca gctaaaagat aatttttagc
      961 cctattttca ctttgggtta aaagtgaaaa aatagcaaaa cgatgagata tgcttttatc
     1021 tgctgctata tcagaaattt cagtattaaa agattctaag gcatttattt tcatcttaat
     1081 tcaagtccca tttctttaaa gctttgtaaa attttatcca tatgttctgc aacttgagcc
     1141 tcttctaagg ttttattcat atctctaaaa acaaatttaa gagttaaact ataagaattt
     1201 tcaaggcttg cgtcgctata caaatcaacc aagcggaaat tttctaaatt ttctaaatct
     1261 aattcttcta tgcaattttt aattttttca tattcaaaac ccttaggtat aagtatgcta
     1321 agatctctgc taatgcttgg gaatttagaa taaggtttag ccaatttaaa atgatgttta
     1381 atcaaattta aatcaagttc gcaaatatat gtttttagca aatctctttc gttttctatt
     1441 tttaaatgca agcgacctgc aaaacctatt tttaaatctt ttaagtaaat atcagcttgc
     1501 tcgtaaggac ttaaaatatc atgctttgaa gcttttaatt taaaatctcc tatgatattt
     1561 ttaagatcta aaagaaaatc ataaaaattt accaattcag gctttgcttt attcgaaatt
     1621 ttaggctctt cctgatagcc tgaatgtaca aaagctatat gattgagttc ttcattatta
     1681 gttccaaaaa ctactccaag ttcaaaaagc ttaataatct ttttagaatt tttcgcattt
     1741 aaacttgctg cgtttaaaag atggtttaaa agcgttgttc ttagagtgtt taactctgca
     1801 gtaattggat tgataagttt taattttata ggattaaaac caagagattt tagctcctct
     1861 tcattatcta aaacataatg caaactttca aaatatccgt tagctaccgc tttttttcta
     1921 agttctacta gctctttata atttttataa gtggaattta aacgattttt ttctacaaat
     1981 tccaaacctt ttgaagcgat attatcaata cctataatac gcactacttc ttcacaaata
     2041 tcagctagat tttttatatc agggcgatgc ataggggctt taacattaac aagtccatca
     2101 gcggaaatta taagttcaaa acctagtttt ttaagaattt ttaaaacttc atccttatcg
     2161 atttcttgac ctatagtctt attaatgctt tcaatactga ttgctatgtt agacaattct
     2221 ttatttgtta taatttgttg tgaggagcta taaataatca aatttggatt ttgttctaaa
     2281 acgctcaata aaaaatccat acctaaattc aatttaggct cacttcctct aaaacttcta
     2341 taaatagttt gctcatcttg ctttttataa gccatttttg catctgcaat aatcattgga
     2401 tcagtataat ttgcctcgat gatgattatc ttagaatctt ctttgcattt aaatttttct
     2461 tcttggtaaa ttccgcttac actaagaagt tcatcttggt aagaaatttt agtctcaccc
     2521 cgtgtttctt tgactaagct aaaagtaaat tcttcatttt ccttataaaa agaattgaga
     2581 tcataagcat taaagagtac acctgtagag tgtgttgcgt aatttaataa attttctata
     2641 gggttttttc caaaattttc tatttgtgcc aatcttaaac taatgagtag attggtttga
     2701 attttttctt ttaattttat agctctgtaa ttataaagac tgtttaattc tttttcagca
     2761 ctcaagcgta aaatacgacc tatgcctaaa acattttccc cttctttaaa aggtggtttt
     2821 tcttttaagt ttaaattcaa agccactgct aaatcgcgtg ctataccata aatactaaga
     2881 caatctcccc tatttggagt taattcaact tcgatcaaac catcattaaa aatttcatag
     2941 gaatttaaag cttttccaag ctctaatttg cctatactat cgtctaaaag cataatgcca
     3001 tcattgattt tttcaaagcc taattctgtg ctagaacaaa gcataccgca agaatctact
     3061 cctcgtaatt tagcctcttt gatctccata ccatttggca ttaaagcacc ttttaaggcc
     3121 actgcgacaa attgcccttg tgcgacattt tgggctccac aaactatttg caagatttca
     3181 tttccaacat caacttgaca aatgcttaat ttgtcagaat tttcatgctt tactttttct
     3241 ttgacaaaac ccactacgat tttatccggc acttttaagg tgcaaatttt atctacttct
     3301 atacctatag aatttaatgt atgcgctata tcatctaaac ttttatcttt aaaatctaac
     3361 caatcactta accaactttt agtaattatc atctaaattg ctccaatagt cttaaatcac
     3421 cttcaaataa agatcttaga tcaggaattt gatgtaaaag cattgcaaag cgttctacac
     3481 caagaccaaa agcatagcca cttacatctt tataacctac aaaattaaat acattaggat
     3541 ctacaacccc gcatcctaaa acctcaagcc aacccgtttg cttacaaacc ctacatccac
     3601 aacccttgca aaatacacac gaaatatcaa cttctgctga tggttctgta aatgggaaaa
     3661 aactaggacg aaaacgcact tttacatctc caaacatata acgcaaaaag tcctctaaaa
     3721 tactttttaa atttgcaaaa cttactcttt gcccttcttc tactacaagc ccttctactt
     3781 gatgaaacat gggagtatgg gtgatatcaa aatctcttct aaaaactgct cctggagcta
     3841 tcattctaat gggtggtttt tgtgcaagca tggttcgaat ctgcacagga gaagtttgag
     3901 ttcttaaaag tcttttatcg tcaaaataaa aagtatcttg catatctctt gccggatgag
     3961 attttggtaa atttaaagct tcaaaattat gaaaatcatc ttctattaaa gggccttttt
     4021 ctatgctaaa atttaaattt acaaaatact ctataattct atccatagta ctcataacag
     4081 gatgtaaagc accatttgta ggactttcat caaaatagtt aaaatcaaga gcatcttgct
     4141 tcattttttc ttctaaagca agattttcca aaattttaaa ttttgataaa taagcctcat
     4201 taaaagcatc tttttgagaa tttaatttag ctgcaaattc tttcttttct tcacccgcta
     4261 aatcttttag ttttgcaaaa ctctctgtta agataccttt ttttccaagg acagcaactc
     4321 gaagagcctc taagtcattt aaatttttac attcttgaat ttgttcgata aaattttgca
     4381 attttctacc ttaataagtt atttttagtt ttaattttat taaaaactat tttaaattca
     4441 gcataaaaac taaagtttaa agatataatt gtataaaatt aacactaaag aaggataaat
     4501 aatgaaagaa aaaactgttt ttgaactcat tgttgaagga aaaattcctt gcaataaagt
     4561 acttgaaaat aatgattttt tagcttttca tgatatagct cctaaggcgc ccattcatat
     4621 acttattatc ccgaaaaaac attttaaaga ttttcaagaa tttgatccta agcttatgga
     4681 aaaaatgaca agttttatac aagaattggc tgtactttta ggagtggata aaagtggata
     4741 tcgcttggta acaaattgtg gcaaaaacag cggtcaagaa gtttttcatc tacattttca
     4801 tatgttgggt ggctttagac ttcctaaaga aaaagatgag aatgaaaatc ctcaagcttt
     4861 attttaattt atgatagtgt tttttacact atcataacaa aatgcttatt ttgttaaagg
     4921 aataagcaaa ccttcatata atgaattata aatttcatca ccgcatagtt gctttgcaag
     4981 ctctaatcca aataaaatag ccgttgcagg acctgcactt gtaataacat ttttatttac
     5041 aactacagct ttattcactc tatttccttg aagacctgtt tcgcaacttg gatagcaagt
     5101 aaattcaccc tctaaaactc cagcagcatt taatactata ggagaagcac aaattgcaga
     5161 aacaatcttg ccttcactgt gtagtttttt aataatactt aaaatttcat ttgaattttt
     5221 aagattattc ataccatcaa aaccacccgc caaggctatt gcatcgagat ttttagtgtc
     5281 tacagcttct aaagaacaat ccgcttttat gctgatccca tttgcacctt ttaccaaaag
     5341 ttcattatcc aaagaagcga taataacttc caaattccca cttaattccg cagctctttt
     5401 taatacatct gctataccta taaactcagc ttcttcaaat ccttgagcca aaggaatcaa
     5461 tactttttta ctcatttttt ctctccttat ttttaaattt ttcttctcga attttagctt
     5521 tttcactcat ttgacggtta aatcctacta ttaaaaatat cataaaaagt acaaaagcta
     5581 cgactaaaat aaaatccaaa actatcatat catgaagcct tttttgaaaa ttctaacata
     5641 ttattgcaaa tctttaaaga aaaatcaaac gataatttta taaaatttaa gtcaaaaatt
     5701 tttgataaag gttgtgtttt gaatcaaaaa aatataagaa tatttgtatt tttcgccatc
     5761 attctttttt ggggatattt ttcttttcct attgaaattt tacaaattaa agaagcggat
     5821 ggggctataa attacggata cactccaaat gcgcaagctt acataaaaag ttattttatc
     5881 actcttttac ttactgcttg ctcggcaatt attggtgtag ttgttggttt tagtcttgcc
     5941 attttacact tttcaaagat aaaagtttta aattttatca tagatgaata tattgatatt
     6001 ataagaggaa cccctgtaat attacaactt atgatttttg cttttgtaat ttttactttt
     6061 attgataatc tttatgcagc aatatttgcc ctagggctta atagctctgc ttatatagca
     6121 gaaatcgtaa gaagcgggat taatagtgtc gataaaggac aaatggaagc agcgcgtgct
     6181 atggggcttg attataaaac ttcaatgaaa gaaattatat taccacaagc gaccaaaaac
     6241 attttacccg ctttggctaa tgaatttatt tctttgttta aagaaacttc cgtggttgga
     6301 tttataagcg ttattgatat tactatgcaa agccaaagcc ttcaagcggt attatacaat
     6361 ccaaaacctc ttatttttac aggacttgtg tattatgtaa gtgtaaaaat ttttagttat
     6421 tttgctaaaa aacttgagtt aaggatgagc aaaaatgatt gagattaaaa atttaaataa
     6481 aaaatatgga aatttagaag ttattaaaaa tatcagcacc aaaatttcca aaggcgatat
     6541 tatatccatc ataggtccaa gtgggggtgg aaaaagtact tttttgcgtt gtattaaccg
     6601 cttggaactt gcagacagtg gagaaattct tatcaaagga cgcaatatct tagatgaaca
     6661 aactgatatt aataaaattc gtcaaaaagt cagtatggta tttcaacatt ttaatctttt
     6721 tgccaataaa aatgtattgc aaaacttatg cttagcccca gtaaaaacag gaatcttaag
     6781 cgaagatgaa gctataaata aagctgaaat tttacttaaa aaagtaggat tatccgataa
     6841 aaaagaggta atgccgcaca aactttcagg cggacaaaag caacgcattg ccatagcaag
     6901 aagtttgatg atgaatcctg atgtaatttt atttgatgag c
//
LOCUS       DARAII010000094         6838 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.094, whole genome shotgun sequence.
ACCESSION   DARAII010000094 DARAII010000000
VERSION     DARAII010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6838)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6838)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6838
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.094"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..214)
                     /locus_tag="SB143_001513"
     CDS             complement(<1..214)
                     /locus_tag="SB143_001513"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750031.1"
                     /translation="MNKVLAKRLAKKAREKELFLLFKEFMREVEELEFFVFRKIKNSK
                     EFKEYILKLEDKKSPKLFSDESLKVKL"
     gene            complement(224..532)
                     /locus_tag="SB143_001514"
     CDS             complement(224..532)
                     /locus_tag="SB143_001514"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750032.1"
                     /translation="MQKNIKVDFNSKIIALEIDYSKDYGNFFKNIVNELYLENKDYIK
                     LKGYTRKINFQFGVDQEKQKRFLLLSYEQIDKIKSINLLMLSEAYRLINFIAEKILIK
                     "
     gene            complement(546..890)
                     /locus_tag="SB143_001515"
     CDS             complement(546..890)
                     /locus_tag="SB143_001515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750033.1"
                     /translation="MKIEVIKNKFFDLESVLKGERKNIYNKDAYAFLECKDDKDNIAR
                     FFDLGEIALNYNQENNQIEVYFLKYEFFQESYEILKYHIVNSIKFAFVSAEDTFKRLS
                     NLKINVKDFIKE"
     gene            complement(1340..1765)
                     /locus_tag="SB143_001516"
     CDS             complement(1340..1765)
                     /locus_tag="SB143_001516"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750034.1"
                     /translation="MEESIERRINEIYQETLKQNFDERYDTLKQFDFISKNCSDEYKL
                     KKDIIKKNFFDFMGEVLGSRVKRGFFIDFLISIFCLSFSAFAIILSAVSREELFLNYC
                     LIAGFFGFIGIWGFDSNLNALKYYANLYSKEFIRKRIFG"
     gene            complement(1771..3003)
                     /locus_tag="SB143_001517"
     CDS             complement(1771..3003)
                     /locus_tag="SB143_001517"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024553.1,HMM:NF024554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEF9750035.1"
                     /translation="MPKPKVFNEEILTLPFDMILMQNGYFHKKDKCSRNFITMSNDND
                     LIVITRQTNGQYLYFNPSEENDRGNIYSFCKNRGIKINDLLNEKVDKLELKHTIEPCN
                     SMNKATVEAISNYKSFTTIKQRNFFKDDRLISQEILETFNTLKQDKHYNVCVPTYVLD
                     DFEGKEFINSSGYIAYLRRPIMQDKQGNTYSKPIKQLCYGGKGLEIIRNKDNKQKIED
                     IKTIIITESMVDSLSLFELKNYDPNSTLLCATNGQITKSHKEIFAYFEKNAKNAKIVL
                     GYDNDEKGLDFTLKTKQCFKQREIIEENPKLKDFNDDLLISKVFGLKKDFSLEDIQKE
                     INSLQKKTEYLLDRKSVLIESKKTELIKEISNNDIPLVSYLKPKLENFVNLKALGKRF
                     DEFNAYLGRITENKKIKE"
     gene            complement(3003..3743)
                     /locus_tag="SB143_001518"
     CDS             complement(3003..3743)
                     /locus_tag="SB143_001518"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750036.1"
                     /translation="MEDNFKKFLEEEIKRQKQEKENDNANNTRSNSTGIVRENDKTEP
                     REISQSSSHSDPERDGGYSTMATLGLSDNLQTIRFKRELSESLSRNTDEPRNTAQSRL
                     SGAESRESRAESRESGAIISANKEFQNINDEKIPSKLSKEESKEFKDYIKDLRKQTLL
                     SYTKDENVAENILNLQNDLKYYTKKSEILTPSAKKDLEEKIKTSFSKLNNFENANIIP
                     KGTLKEALNQKELDLCQKISNQSKTKER"
     gene            complement(3776..4561)
                     /locus_tag="SB143_001519"
     CDS             complement(3776..4561)
                     /locus_tag="SB143_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011799393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750037.1"
                     /translation="MKKISLGAIVAFSLMNVSVSAIDLSEFTGDTKLSCEAVLCLASP
                     YKPSECAPALARYFGFSAKYWSDVIRMRTNFLNLCPLGANNAIKSDDKELEAWRNSLV
                     NLTGTCYIPDLNKKQQRTILWVEEIKRCTHGDGCTTVKINHYGFRIDPNLDNNCKILS
                     SNKYSDYNLKYTCPTKFYPEEDWNNGYEKKEVNQSEFNSLKEEDRFTADKLTEVSYSE
                     YKNLPNNKRKISTSGFKTTYYRIDLGYYKKEWINKNCWINQGK"
     gene            complement(4657..5613)
                     /locus_tag="SB143_001520"
     CDS             complement(4657..5613)
                     /locus_tag="SB143_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750038.1"
                     /translation="MKKNKIFFLFFFASSLFSAGIPVIDAASIAQAVTNYQQMLKQYE
                     QMIKDTTNFEKQMKELGVDMSSISEILGDTKSLINQTQSLYDGIKAVPNDFYGEVEDI
                     TKACNFMEQQSTFFQTKIQNVGTKYTDKVNSCISAISDTTEVDKSINQLNQKLLIISK
                     NDTKTYNETLVQIQNLENAKQYLASKANQDRVNKMLAFYDNYQKNESTNPYTKTKMDK
                     DLQELSKQLLKANNQKQAQALTNSILIKILEMTQRQYELNIYFSQAMTSLGLNGNGGQ
                     MNKSPSFELIYQEPQDPKEYNPYLKDIKQQPKDENGFPIFTF"
     gene            complement(5610..6719)
                     /locus_tag="SB143_001521"
     CDS             complement(5610..6719)
                     /locus_tag="SB143_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750039.1"
                     /translation="MEETREETPKTILSEWQEQFQDKETEIEKTLEKEKSSEELQKEL
                     EELNKLNFQEDLENQEVLKSQLEKELKLEDLPQEAKQTLEILEEKEKLDNDMRNFIEL
                     TTEYETPNEKRAFIENNLKEVRETPEINESLSILKEQDELQKEIDNTKEEMAREEKEL
                     KEQLENKEKKGLSQEEYDEKFAEMEKDHAQKLKEMEEKMEKLEQNFENSIENLLNSKS
                     LSAILKSLYEMDKSLHLILKEKENNFDELNRQREEKLNLAMQTEKTREVVIDFIKELH
                     QKTKGVENGISEMNKERNFYYELDKLTKNPEKMDLKETQKLQEYINYIDKETPNFKEN
                     YPKKYKQTKKIIENNIKKTMDKAKVKTANSQGMSL"
BASE COUNT         2041 a         1068 c          756 g         2973 t
ORIGIN      
        1 taagttttac ttttagactt tcatcactaa aaagttttgg agatttttta tcttctaatt
       61 ttaagatgta ttctttaaat tctttagaat tttttatttt tctaaaaaca aaaaattcta
      121 actcttcaac ttctctcata aattctttaa aaagcaaaaa tagctctttt tctcgagcct
      181 tttttgctag tctttttgct aatactttat tcatattatt atcctattta attaaaatct
      241 tttccgcaat aaaattaata agtctgtaag cttcagataa cataagtaaa ttaatactct
      301 ttattttgtc aatttgctca taagaaagca ataaaaatct tttttgcttt tcctgatcaa
      361 caccaaattg aaaatttatt tttcttgtgt aacctttaag cttaatatag tccttatttt
      421 ctaaataaag ttcattaaca atattcttaa aaaaattacc ataatctttg ctataatcaa
      481 tctctaatgc gataatttta ctattaaaat caacttttat atttttttgc ataatccacc
      541 cccacttatt cttttataaa atctttaaca ttaattttta agttggataa tcttttaaaa
      601 gtgtcttcag cactcacaaa agcaaactta atactattta caatatgata ttttaaaatt
      661 tcgtagctct cttgaaaaaa ctcatactta agaaaataaa cttcaatttg attgttttct
      721 tgattataat ttagtgcaat ctcgcctaaa tcaaaaaatc tagcaatatt atctttatca
      781 tctttacatt ctaaaaaagc gtaagcgtct ttattataaa tattttttct ctcgcccttt
      841 agaacacttt ctaaatcaaa aaacttgttt ttaattactt cgattttcat tttttgtcct
      901 ttgtcttttg tttttgttat tataattata ccttttttat acttagtata tacttaatct
      961 atacattttt tatatgttat ttatatgttt ttttaaatcc attttgcacc aaacccaaaa
     1021 cattttcccc ctttttttgc ttatcgtaag ccctttttag tattaaaaag gagtttaaaa
     1081 gaatttatta tgtttgcaag gaattgaaat tttaaatata agctgtttga aataataatg
     1141 gggcgttgcg gggtgtcccc gcttaaactc ataaaaatta agacttttgg cttaattttc
     1201 cacataaaac aagtgtttta tggggttagc aggcaaataa aaaaaacctt ataagacaaa
     1261 aaacaaaaga caaaggattt ttgtttattg cctactaatt tcgtaattat atcaaatatt
     1321 tatttaaaaa tggcttgttt taaccaaaaa ttctttttct aataaattct ttagaataaa
     1381 gatttgcata atactttaat gcgttcaaat tactatcaaa tccccaaatg ccgataaacc
     1441 caaaaaatcc tgctattaaa caatagttta gaaaaagttc ttccctactc acagcactta
     1501 gaattattgc aaaagctgag aaagataaac aaaatattga gataagaaaa tctataaaaa
     1561 aacctctttt caccctgctc cccaaaactt ctcccataaa atcaaaaaaa ttctttttta
     1621 taatatcttt ttttaattta tattcatcag agcaattctt agaaataaaa tcaaattgtt
     1681 taagagtatc atatctctca tcaaaatttt gttttaaagt ttcttgataa atttcattaa
     1741 ttcttctttc aatgctttct tccattctca ctactcctta atttttttat tttctgttat
     1801 tctacccaaa tacgcattaa actcatcaaa tctttttccc aaagccttta aatttacaaa
     1861 attttctaat tttggcttta aataagaaac taaaggaata tcattgtttg atatttcttt
     1921 gataagttct gtttttttac tctctattaa gacacttttt ctatcaagta aatattctgt
     1981 ctttttctgc aaagaattaa tttctttttg tatatcttct aaagaaaaat ccttttttaa
     2041 tccaaaaact ttagatataa gcaaatcatc gttaaaatct tttagctttg gattttcttc
     2101 tataatttct ctttgtttaa agcattgttt agtttttaga gtaaaatcaa gtcctttttc
     2161 atcattatca taccctaaaa cgatcttagc attttttgca tttttttcaa aataagcaaa
     2221 aatttctttg tggcttttag taatttgtcc gtttgtcgca caaagtaaag tgctattagg
     2281 atcataattt ttaagttcaa aaagagaaag actatcaacc atactttctg taatgatgat
     2341 agttttaata tcttcaatct tttgtttatt gtctttattt ctgatgatct caagcccctt
     2401 acccccatag caaagctgtt ttataggttt gctataggta ttgccttgtt tatcttgcat
     2461 aataggtctt cttaaataag ctatatatcc gctagaatta atgaattctt tgccttcaaa
     2521 atcatctaaa acataagtag gcacgcaaac attataatgt ttgtcttgtt ttaaagtgtt
     2581 aaaagtctct aaaatctctt gagatattaa tctatcatct ttaaaaaaat ttctttgctt
     2641 tatagtagtg aaagatttat aattgctaat ggcttctact gtagccttat tcatagaatt
     2701 acaaggctct attgtatgtt ttaattctaa tttatctact ttttcattta acaaatcatt
     2761 gatttttata cccctattct tgcaaaaaga atagatattg cccctgtcgt tttcttcact
     2821 aggattaaaa tacaaatatt gtccgtttgt ttgccttgta atcacaatta aatcattatc
     2881 attactcatc gtgataaaat tgcgactgca cttatctttt ttatgaaaat atccattttg
     2941 cataagtatc atatcaaaag ggagagtgag tatctcttca ttaaagactt taggctttgg
     3001 cattatcttt ccttagtttt gctttgatta gatatttttt ggcataaatc taattctttt
     3061 tgatttaaag cttctttcaa agtgccttta gggattatat ttgcattttc aaaattattt
     3121 aattttgaaa aagatgtttt aattttttct tccaaatcct ttttagcact tggagttaaa
     3181 atctcactct ttttggtata atattttaaa tcgttttgaa gatttaaaat attttcggct
     3241 acattctcgt cctttgtata agaaagcaaa gtttgctttc ttaaatcttt aatatagtct
     3301 ttaaattcct tgctttcttc tttacttaac ttgcttggta ttttttcatc attgatattc
     3361 tgaaattctt tatttgctga tataattgct ccgctttctc tgctctctgc tctgctttct
     3421 ctgctctctg ctccgctaag tctgctttgt gctgtgtttc taggttcatc tgtatttcta
     3481 ctaagacttt ctgataattc tcttttaaat ctaattgttt gcaagttatc gctaagtccc
     3541 aaagtagcca tagtggaata tcccccatct cgttctgggt cgctatgtga agatgattgg
     3601 ctaatctctc taggctctgt tttgtcattc tccctgacaa ttcctgtgga atttgatctt
     3661 gtattatttg cattgtcatt ttctttctcc tgtttttgtc tttttatttc ttcttctaaa
     3721 aattttttaa aattatcttc cataatattt taacctaaaa atgatttttt ttctattatt
     3781 ttccttgatt aatccaacaa ttcttattaa tccattcttt tttgtaataa cctaaatcta
     3841 tacgataata agttgtttta aaaccactcg tgcttatttt tcttttattg tttggaagat
     3901 ttttatattc agaataacta acttctgtga gtttatctgc tgtaaatcta tcttcttctt
     3961 ttaaagaatt aaattcgctt tgatttactt cttttttttc ataaccatta ttccaatctt
     4021 cttcaggata aaattttgta ggacaagtat attttagatt ataatcagaa tatttatttg
     4081 aagataagat cttgcaatta ttatctaaat ttggatcaat tcgaaagcca tagtgattga
     4141 tttttacagt agtgcaacca tctccgtgtg tgcatctttt aatttcttca acccacaaaa
     4201 tagttctttg ttgctttttg tttaaatcgg gaatatagca agtgcctgtt aaattaacta
     4261 aactatttct ccacgcttct aattctttat catcgctttt aatagcatta tttgcaccca
     4321 aaggacaaag atttaaaaaa ttagttcgca ttcttattac atcactccaa tatttagcac
     4381 taaatccaaa atatctagca agtgcagggg cgcattcact cggtttataa ggcgaagcta
     4441 aacatagaac agcttcacaa gataattttg tatctcctgt aaattctgat agatctatag
     4501 ctgatactga aacattcatt aaagaaaaag ctacaattgc tcctaaactt atttttttca
     4561 ttatttctcc tttattctgt aaaaattata ccttttttat acttatttta tacttaatat
     4621 ataccttttg tatgtgtttt ttatatgtta ttttttttaa aaagtaaaaa taggaaaacc
     4681 gttttcgtct tttggttgtt gtttgatatc ctttaaataa ggattatatt ctttcggatc
     4741 ttgcggttct tgataaatca attcaaaact tgggctttta ttcatttgcc caccatttcc
     4801 atttaaacct aaacttgtca tcgcttgaga aaaatatata tttaactcat attgtctttg
     4861 tgtcatttct aatattttaa ttagaattga atttgttaat gcttgagctt gtttttgatt
     4921 attagctttg agtagctgtt ttgataattc ttgtaaatcc ttatccattt ttgtttttgt
     4981 ataaggattg gtgctttcgt ttttttgata attatcataa aaggctagca ttttatttac
     5041 gcgatcttga tttgctttag acgctaaata ttgtttagca ttttctaaat tttgaatttg
     5101 cactaaagtt tcattgtaag ttttagtatc atttttgctt ataattaaaa gcttttgatt
     5161 gagttgatta attgatttat cgacttctgt ggtatcactt attgcagaaa tgcaactatt
     5221 gactttatct gtgtattttg tgcctacatt ttgaatttta gtttgaaaaa aggtgctttg
     5281 ttgttccata aaattgcaag ctttagtaat atcttcaact tccccgtaaa aatcatttgg
     5341 cacagcttta atcccatcat ataaactttg ggtttgattg attaatgatt ttgtatctcc
     5401 taaaatttca ctaattgaag acatatctac ccctaattct ttcatttgct tttcaaaatt
     5461 ggtagtatct ttaatcattt gctcgtattg ttttaacatt tgttgatagt ttgtaactgc
     5521 ttgtgctatg ctggcggcgt cgattacagg aatacctgct gaaaataatg aacttgcaaa
     5581 aaagaaaaga aaaaatattt tatttttttt cataatgaca ttccttggct atttgctgtt
     5641 ttaactttag ccttatccat tgttttttta atattatttt caataatttt tttggtttgt
     5701 ttatattttt taggataatt ttccttgaaa tttggagttt ctttatcaat ataattaata
     5761 tattcttgca atttttgagt ttcttttaaa tccatttttt caggattttt tgtaagttta
     5821 tcaagctcat aataaaaatt gcgttcttta ttcatctcac taattccatt ttcaacgccc
     5881 ttggtttttt gatgaagttc tttaataaaa tctattacaa cttctctagt tttttctgtt
     5941 tgcattgcta aatttaattt ttcttctctt tggcgattaa gttcatcaaa attattctct
     6001 ttttctttta aaatcaaatg caaactttta tccatttcat acaatgattt taaaattgca
     6061 ctaagacttt ttgagttaag aaggttttcg atggaatttt caaagttctg ttccaacttt
     6121 tccatttttt cttccatctc tttaagcttt tgagcgtggt ctttttccat ttctgcaaac
     6181 ttttcatcat attcttcttg acttaaacct tttttttctt tattctccaa ctgttctttt
     6241 aattcttttt cttctcttgc catttcttct ttggtattat caatttcttt ttgtaattca
     6301 tcttgttctt tcaaaataga caagctttca tttatttctg gagtttctct aacttcttta
     6361 agattgtttt caataaaagc tcttttttca tttggagttt catactctgt tgtaagttct
     6421 atgaaattac gcatatcatt atcaagcttt tctttttctt ctaaaatttc taaagtctgt
     6481 tttgcttctt gtggcaaatc ttctaacttt aattcttttt ctaattgact ttttaaaact
     6541 tcttgatttt ctaaatcttc ttgaaaatta agcttattaa gttcttctaa ctctttttgt
     6601 aattcttcac tgcttttttc tttttctaaa gttttttcaa tttctgtttc tttatcttga
     6661 aattgttctt gccattctga caaaatagtt tttggagttt cttctctagt ttcttccatt
     6721 gttatgatcc tttaaaataa ttaaaataaa tatagacaat tataaaaatc gagcatttaa
     6781 acttaaatta aaaaaacagc cactatttta agaaaaataa aaatagctta gtggctat
//
LOCUS       DARAII010000095         6799 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.095, whole genome shotgun sequence.
ACCESSION   DARAII010000095 DARAII010000000
VERSION     DARAII010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6799)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6799)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6799
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.095"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(531..2897)
                     /locus_tag="SB143_001522"
     CDS             complement(531..2897)
                     /locus_tag="SB143_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEF9750040.1"
                     /translation="MKIIFLVLLSICTLFSFELALNTGRENNQAFAVLHASNDLDFTC
                     QKIVIEDKIHFECEIMGVVDNKLSDQSFTAFDLKFIKEPQKIKMIILPKMSARMFDLS
                     QNIYADKELNSSSMHKSKSFTFIFTPELEHVKDYDGLDFNINFPYESLPYVGALDLNS
                     DPVIIPQSADINTYLRIKNEYDKANYTQVVIDAQNAINRYRGSIFMNEFILYKLRAQS
                     QIYTQDPSMRDQQVLEKMIDEAKNWNRTFTSDKNFPEVLHIMLRTYIALSQRADIEYT
                     MSILNNEQPNSYFTQLARLDYADYIYPLNEKERAIDIYEDIYFNTKNLDLAARAAMSL
                     IKDYLANNQIDKAVQYVNTILKANPEYFPKDMFRSLELAKLFNQHKQYDISASIYEDV
                     FVKMPKIDDRYEQVLKDLALTLAMTSRSSDANKYLDLYMDNYLDGKYLDEIRKANDEV
                     FFALADNNATFLHQRYANLMKEYAQKDENIVNKALSEDVALYYKEGNLSAVLTYKDQI
                     ENKKLTNSAKLLEQAAIQLLNNDLKADNCINAVNIFTQFNAYEIGQKIENKKQMLACL
                     MRTSNMQQAMDYIDKNHNEDSIFYGLQKASILYDNKQYPLALNIAREIANSRILKSDE
                     ENFKAYYLQFLSYLKMDDYNMAIKILQILESFPMNFTMVEAYDNLLIYANDHNMQTTI
                     LTYAPKAIDYQNLKGINLFSPNLEFIYLDTLAKTNQSQEALAVLIDLLKLKLSDEDRA
                     RALYIQSMTYERMQNTQAQKESLKQCLELKTTSNWQNLCRDKNQILAQ"
     gene            complement(2910..4283)
                     /locus_tag="SB143_001523"
     CDS             complement(2910..4283)
                     /locus_tag="SB143_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEF9750041.1"
                     /translation="MLGNIDLSSLNIPLSYPFAFLIAVAIVLLLCSGFWKFHRTFYMA
                     TSSLSLIVSVFLILNNIAAQGLEAKGFLGTLNNDIVSLYASLVILCFSFLYLLMQKEE
                     NQGEFYSLFLFMVAGLLLMVSSSNLILIFIGLESSSLALYTLIAMRGSNNAISSAIKY
                     FSVAAVGSGFFVMASALIYIRTGTLDLGLKLALDKDPMLLGAGVMIFVLCAIKLSLAP
                     FHFWLKDVYSSAHVNLVAFISVVPKIAMFVVVIRLFSFLNYLGFENILNVLAVFSMLV
                     AALAALSQKDVKKMFAYSSIVHSSFVLAACIPLLNAADDVLNSIFVYWVLFGFANYGV
                     FLILSTFKGSSFEEFNALLFKKPLIALSLSFCILSLAGIPPFGAFWGKVMVLKTLIVA
                     DYWYLALFMALASLIMLYAYLKLVIHALFVKTQAKVSEHLNFIQSFILALCTLISVFA
                     LFLLLKI"
     gene            complement(4273..5763)
                     /locus_tag="SB143_001524"
     CDS             complement(4273..5763)
                     /locus_tag="SB143_001524"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEF9750042.1"
                     /translation="MLNYLIFFPLIAAFVTLVLNRGGIKVFSVIASLMVLGLNIKIWQ
                     DYLNGINLEYQLPFKVVNFMSYHIGADSIALILMLLSSLMIFLSFLFLKIEQKAMVSC
                     IFFLEFAIMGLFSSLDGLLFYVFWEFSLLPLLYIMGVYGKDYRAGIKFFIYAFAGSIL
                     MLLALIYQAYATYKLLNIFTFDIEIWKNNASAMSFNEQILLFGAFFIAFVIKAPLFPF
                     HTWAPKVYANSPILVSMMLVAFKMAPFGFLRFCLPLFPDASVYFMPLVVALCIVSILY
                     NALIAYRASNLKELIAYSSISHLGVMILGIFSFNALGLSGAVFYMFAHGIVTGALFLM
                     AELLYKKYGTLEISYYHSLANKAPLFTIFFTLILLASISLPLTISFVGEFLILLGVAK
                     LNLLYALLAGLVIILGAIYMLHVFRKMFFMQKESQLETCSLHAREILSLIPIVVLIFY
                     LGIAPKIFLDPLNKDADFIVEKMKERAIDDQTIRFLNHLEGENNVR"
     gene            complement(5765..>6799)
                     /locus_tag="SB143_001525"
     CDS             complement(5765..>6799)
                     /locus_tag="SB143_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEF9750043.1"
                     /translation="YLVIRAGEIYSLVPEVSYFIALLGAFVAIFAASMALVARDLKRI
                     IAYSTLSQLGYMFVAAGLGAYGIALFHLVTHAFFKSLLFLGAGNVMHAMDDQLDIKKM
                     GGLFKSLKITAIFMTIGSLALAGIYPLAGFFSKDLILGYSFIAHYHGIFLILLISAFL
                     TAFYSFRLLMLVFFTPSRHDKHPHEASKIALLAMSPLVVLAIIAGLFEHSFFEYLSTQ
                     LIFIDAQNKLVMICASVAAVLGVVLAIIAYKASWFKDSIEQNKIHKLLSNDYFIPKFY
                     HEFIVSKYESLCAVLKHCDTYIFDAIVDKIAYYCNLISQKIIMSNSLNLMLRFLVAGF
                     VILLILVWVV"
BASE COUNT         2654 a         1154 c          883 g         2108 t
ORIGIN      
        1 attcattgat acttttaact tattatttac taacactttt aattgcttat tcattaatat
       61 ctttaattcg ttatttgtta agttctaggt taggtattgg tttgttttta tagttcctta
      121 tttactagtt tattctgtat tttattgtta tattgttgct cttgtgaatt aatttgctta
      181 tccattgaat ttatttctca cttcacttaa aataaatcac cttcttgatt aaattcctta
      241 cttaacttca tgttttgcct actcgaaaaa atgactcact ttatagattg taaaaattaa
      301 tatacgctat ataactttgt tcgcttataa atttatacat atttataccc aaaattgaaa
      361 gctagcatgg aaagaactat taaagataaa aagattttta taaagaaaaa tatagtaaat
      421 ttcttaaaaa taaaaatatg attttagttt ttattatgat gatttaaaaa atccaagcta
      481 agcaatcaca aaacaaaaat catctcaatg catagaaaat caaattaagc ttattgggct
      541 aaaatttgat ttttatctcg acataaattt tgccaattag aagtagtttt aagctccaaa
      601 cactgcttta gactttcttt ttgcgcctga gtattttgca ttctttcata agtcatactt
      661 tgtatatata aagctctagc cctatcttca tctgaaagct ttaattttaa caaatctatt
      721 aatactgcta aagcttcttg actttgattg gttttcgcta aagtatcaag ataaataaat
      781 tctaaattgg ggctaaaaag attaattcct tttaaatttt gatagtcgat agccttgggc
      841 gcataagtta aaatcgttgt ttgcatattg tgatcgtttg cgtaaattaa taaattatca
      901 taagcttcaa ccattgtaaa attcatagga aagctttcta aaatttgtaa aattttaata
      961 gccatattat aatcatccat tttcaaataa gacaaaaatt gcaaataata agctttaaaa
     1021 ttctcctcat cactctttaa aattctagaa tttgctattt ctcgagctat atttaaagct
     1081 aatggatatt gtttattatc ataaagtata gatgcttttt gcaaaccata aaaaatagaa
     1141 tcttcattat gatttttatc gatataatcc attgcttgtt gcatatttga agttctcata
     1201 agacaagcta gcatttgttt tttattttct atcttttgtc caatttcgta agcattaaat
     1261 tgtgtaaata tattaacagc attgatacaa ttatcggctt ttaaatcatt gtttagaagc
     1321 tgaatagctg cttgctctaa taattttgca gaatttgtta atttcttatt ttctatctga
     1381 tctttatagg tcaaaactgc acttaagtta ccctctttat aataaagcgc aacatcttcg
     1441 cttaaagctt tattgactat attttcatct ttttgagcgt actctttcat caggtttgca
     1501 taacgctgat gtaaaaatgt agcattatta tccgctaagg caaagaaaac ctcatcattt
     1561 gcttttctaa tttcatctaa atattttcca tctaaataat tatccatata taaatcaaga
     1621 tatttgttag catcacttga tcttgaagtc atagctaggg ttaaagctag atcctttaaa
     1681 acctgctcat atctatcatc aattttaggc atttttacaa aaacatcttc ataaatactt
     1741 gcacttatgt catattgttt atgctgatta aaaagcttag caagctctaa agatctaaac
     1801 atatcctttg gaaaatattc gggattggct tttaaaattg tattgacata ttgcacagct
     1861 ttatcgattt gattattggc aagataatct ttgattaagc tcattgccgc ccttgctgcc
     1921 aaatctaaat ttttggtgtt aaaataaata tcctcataaa tatctatagc tctttctttc
     1981 tcgtttaaag gatagatgta atcagcataa tcaagtcttg ctagctgagt aaaataacta
     2041 ttgggttgct cattatttaa aatcgacata gtatattcta tatcagcgcg ttgcgataaa
     2101 gcaatatagg ttcttagcat aatatgcaag acttctggaa aattcttatc gcttgtaaaa
     2161 gtacgattcc aatttttagc ctcatcaatc attttttcca aaacttgctg atcgcgcata
     2221 cttggatctt gagtgtaaat ttggctttgt gctctaagct tataaagtat aaactcattc
     2281 ataaaaatac taccacgata gcgattgata gcattttgag catctataac cacttgagta
     2341 taattagcct tatcgtactc attttttata cgcaaatagg tattaatatc agcactttga
     2401 gggatgatga caggatctga atttaaatcc aaagctccga cataaggtaa actttcatat
     2461 ggaaaattga tattaaaatc aagtccatca taatctttta catgctctaa ttctggagta
     2521 aaaatgaaag taaaactctt gcttttatgc atactagaag aatttaactc cttatctgca
     2581 taaatatttt gcgataaatc aaacattctt gcactcattt taggcaggat aatcatctta
     2641 atcttttgag gttctttaat aaattttaga tcaaaagcag tgaaactttg atcgcttaat
     2701 ttattatcta ctacacccat aatctcgcat tcaaaatgta ttttatcttc aataacaatc
     2761 ttttgacaag taaaatctaa gtcattacta gcatgtaaga ccgcaaaagc ttgattgttc
     2821 tcacggcctg tatttagggc taattcaaaa gaaaaaagag tacaaatact cagcaatacc
     2881 aaaaatataa ttttcataca ataattatat tatattttga gtaacaaaaa taaagcaaat
     2941 acactaatca aagtacaaag agctaaaata aaactctgaa taaaatttaa atgctccgaa
     3001 actttagctt gagtttttac aaataaagca tggatgacta gctttaaata cgcataaagc
     3061 ataataagcg atgctaaagc cataaaaaga gctaaatacc aataatcagc gacgattaaa
     3121 gtttttaaca ccatcacctt accccaaaaa gctccaaatg gcggaattcc agctaatgaa
     3181 agtatacaaa agctaagcga tagtgcaatc aaaggctttt taaacaacaa agcattaaat
     3241 tcttcaaacg aacttccctt aaaggtacta agaatcaaaa acacaccata attagcaaaa
     3301 ccaaaaagca cccaataaac aaatatagaa tttaaaacat catcggccgc atttaacaaa
     3361 ggtatacatg ctgctaaaac aaaactagaa tgcactatag aactataagc aaacatcttt
     3421 ttgacatctt tttgactcaa tgcggctaaa gctgcaacaa gcattgaaaa tacagccaat
     3481 acatttaaaa tattttcaaa tcctaaataa tttaaaaagc taaaaagtct gataactaca
     3541 acaaacattg ctattttagg aacaacagag ataaaagcga ccaaatttac atgtgctgaa
     3601 gaatacacat cttttaacca aaaatggaaa ggagctaaag aaagtttgat agcacataaa
     3661 acaaaaatca taactcctgc gcctaaaagc ataggatctt tatcaagagc caattttaaa
     3721 cccaaatcca aagtgcctgt tctaatataa atcaaagccg acgccataac aaaaaagccc
     3781 gagcctactg ccgcaacgct aaaatattta atagcacttg aaatagcatt attacttccg
     3841 cgcatagcaa taagtgtata aagagccaag gaagagcttt caagtcctat gaaaatcaag
     3901 atcaaatttg agcttgaaac cataagtaaa agccccgcta ccataaataa aaacaaacta
     3961 taaaattcgc cttgattttc ttctttttgc atcaaaagat ataaaaacga aaaacataaa
     4021 ataaccaaag aagcatacaa agaaacaata tcattattta aagttcctaa aaatcctttt
     4081 gcttctaagc cttgcgcagc gatattattt aaaattaaaa aaacactcac aatcaaagat
     4141 aaagagctag tagccatata aaaagttcga tgaaatttcc aaaaacccga acaaagcaaa
     4201 agcacgatag ccacagcaat caaaaatgca aaaggatagg ataaagggat atttaagctg
     4261 cttaaatcga tattacctaa cattattttc cccttctaaa tgatttaaaa atcgaatggt
     4321 ttgatcatca atagctcttt ctttcatttt ttcaacgata aaatccgcat ctttatttaa
     4381 aggatctaaa aaaatctttg gtgctatacc caaataaaaa attaaaacta ctataggtat
     4441 caaagaaaga atttctcttg cgtgcaagga gcaagtttca agctgacttt ctttttgcat
     4501 aaaaaacatt tttctaaata catgaagcat ataaatagca cctaaaataa tcacaagtcc
     4561 tgccaaaaga gcataaagta aattaagttt tgcaacacct aaaagaatta aaaattctcc
     4621 aacaaaagat attgtcagtg gtaaagatat acttgcaagt aaaatcaaag taaagaaaat
     4681 agtaaataaa ggcgctttat tggctaaaga atgataataa gaaatttcaa gtgtaccgta
     4741 ttttttatat aaaagttcag ccattaaaaa caaggctcct gtaacaatac catgtgcaaa
     4801 catataaaat actgctccac taagtcccaa agcattaaaa gaaaaaatac ctaaaatcat
     4861 aaccccaagg tgagaaatcg aactataagc gatcaattct tttaaatttg aagcacggta
     4921 agcaattaga gcattataaa gtatacttac tatacacaaa gctaccacta aaggcataaa
     4981 atacacactt gcatcaggaa aaagtggcaa gcaaaagcgt aaaaatccaa aaggagccat
     5041 tttaaatgct acaagcatca tagaaactaa aataggcgaa tttgcataaa cctttggtgc
     5101 ccaagtatga aaagggaaaa gcggtgcttt aataacaaag gcgataaaaa atgctccaaa
     5161 aagtaaaatt tgttcattaa aactcatagc cgaagcatta tttttccaaa tttctatatc
     5221 aaaagtgaaa atatttaaaa gtttgtaggt cgcataggct tgataaatta aagctaaaag
     5281 cattaaaatc gaacccgcaa aggcataaat aaaaaattta atccctgctc tataatcttt
     5341 accatatact cccataatat aaagcaaagg caaaagtgaa aattcccaaa atacataaaa
     5401 gagtaagcca tcaagcgaag aaaataatcc cataatcgca aattctaaaa agaatatgca
     5461 agataccatt gctttttgct caatctttaa aaataaaaaa cttaaaaata tcatcaagga
     5521 gcttaaaagc attaaaatca aagctatgct atcagcgcct atatgataac tcatgaaatt
     5581 gactaccttg aaaggaagtt gatattcaag gtttattcca tttaaataat cttgccaaat
     5641 cttgatattt aaaccaagca ccattaaact cgctatgacg ctaaaaactt ttataccccc
     5701 acgattcaaa acaagagtta caaaagcggc aattaaagga aaaaagatta gataatttaa
     5761 cattttacac cacccatacc aaaataagca aaatcacaaa tcctgccacc aaaaatctaa
     5821 gcattaaatt aagactatta ctcataatta ttttttgcga aatcaaatta caataataag
     5881 caattttgtc cactatagca tcaaaaatat aagtgtcaca atgttttaaa actgcacaca
     5941 agctttcgta ttttgaaact ataaattcat gataaaactt agggataaaa taatcattgc
     6001 tcaaaagttt atggatttta ttttgctcta tgctatcttt aaaccaagaa gccttatagg
     6061 ctataatggc taaaactaca cccaaaacag ccgctacgct cgcacaaatc attacaagtt
     6121 tattttgagc atcgataaaa atgagttgag tgctaagata ttcgaaaaaa ctatgctcaa
     6181 acaagcctgc gataatagct aaaaccacca aaggactcat agccaaaagg gctattttac
     6241 ttgcttcatg tggatgttta tcgtgtctag aaggagtaaa aaataccaac attaaaagtc
     6301 taaaactata aaaagcggtt aaaaaggctg aaattaaaag aattaagaaa attccatgat
     6361 aatgagcgat aaaagaataa cccaaaatca aatcttttga gaaaaagcct gctaaaggat
     6421 aaattcctgc caaagccaaa gaacctatag tcataaaaat agcagtgatt tttaaagatt
     6481 taaaaagccc acccattttt ttaatatcta attgatcatc cattgcatgc ataacatttc
     6541 cagcgcctaa gaaaagtaaa gatttaaaaa aagcatgggt tactaagtga aataaagcta
     6601 taccataagc tccaagtcct gcagccacaa acatatatcc aagctgcgat aaagtagaat
     6661 aagcgataat gcgttttaaa tccctagcca ccaaagccat ggaagctgca aaaatagcca
     6721 caaatgctcc taataaagcg ataaaataag aaacctcagg cactaaagag taaatttctc
     6781 ctgcacgaat aaccaaata
//
LOCUS       DARAII010000096         6748 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.096, whole genome shotgun sequence.
ACCESSION   DARAII010000096 DARAII010000000
VERSION     DARAII010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6748
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.096"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..519
                     /gene="modB"
                     /locus_tag="SB143_001526"
     CDS             <1..519
                     /gene="modB"
                     /locus_tag="SB143_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEF9750044.1"
                     /translation="LPLVLPPSVLGFYLLISFSQNSFLGQFLKEYFNLSLVFSFEGLV
                     FASLIFSLPFMVNPLQSAFSSINQNLLDASYTLGKGKIYTLFRVILPNSKVGIFSACA
                     MSFAHTIGEFGVVMMIGGHKKGETLVASIAIYDELEVLNYTLAHQYAFTLFAISFTIL
                     LSLYFVNKKIAL"
     gene            529..1407
                     /locus_tag="SB143_001527"
     CDS             529..1407
                     /locus_tag="SB143_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEF9750045.1"
                     /translation="MIKIDIKLPINTAKGKKQLELNTCLKANEITAIFGESGAGKTTL
                     LKIIAGIIKPEFGRIEVEDELWLDTQKNINLSIQKRKIGFVFQDYALFPNMSVKENIS
                     YAATSKQKAEELLSLMNLENLAKIYPKNLSGGQAQRVALARALAREPQILLLDEPLSA
                     LDFKMRSFLQDELVKILQHFKITTLLVSHDLAEIYKLSHRILELSDGKIIKDARTNEF
                     FTSSNLSAKLRLSATLLEMKKSDILVIFTLLLNQDIVKITLSEEEFLKSYKDVKIGDT
                     LLLSIKAFNPIIVGKL"
     gene            1784..1993
                     /locus_tag="SB143_001528"
     CDS             1784..1993
                     /locus_tag="SB143_001528"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750046.1"
                     /translation="MKKIVASLICILFLGGCSNKTAGMVAIGVIHSPQIVALGAVIVV
                     TSPFWILEKIEENSRKAKGANRKRF"
     gene            1995..2522
                     /locus_tag="SB143_001529"
     CDS             1995..2522
                     /locus_tag="SB143_001529"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750047.1"
                     /translation="MSVPFYKLVDLCNPKFNLEPKITDEFLEEIKHELSYFKEREKYF
                     LQILNKLNDEKSEEYKKFTQEYEKNSQKYILAYKKVFASENDAWFNEMDKKRLYAFYK
                     SYEYYPFIENAKTLNENKVFAVSDREFDDFYFDDEFLVKNESEILEKLSQEHIKEYKK
                     FKEKIFKDSKKNQSK"
     gene            2791..3006
                     /locus_tag="SB143_001530"
     CDS             2791..3006
                     /locus_tag="SB143_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009649347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEF9750048.1"
                     /translation="MPFVNIRITKENGEPTLKQKQELIEGVTDLLAKVLNKNKASTVV
                     IIDEIEMDNYGLGGKTITEVRKEQKKS"
     gene            complement(3090..4232)
                     /locus_tag="SB143_001531"
     CDS             complement(3090..4232)
                     /locus_tag="SB143_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001263563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbfB/YjiJ family MFS transporter"
                     /protein_id="HEF9750049.1"
                     /translation="MRIMICFLSTFVANGLARFGYVVLIPIMIISGRLNENQSIQLGI
                     AVLVGYIFGSFFINFLRKFISLENIAKLSFLIISLSFFACMMESLPFIWAWLWRFFAG
                     VASASLMILAAPLSLPYVKERFRGRIGGFVFSGIGLGAVVSGFTLPFIANINIDLVWI
                     VLGGVVFCAFILSLFSLRTLKRSKQTIHKDNKFKIPYGLWLLIISYILNAIGYLPHTL
                     FWVDYLVRDLKFSTLLAGSSWAFFGIGAVLGSIGSGILADRIGIKNAHIVILFFKALS
                     CFIAAFASDLFWLNFSIFVMGFTTTGNVTLTNALALKIVSKKHFPTSSSFLTLAFGIF
                     QAIFSFLFAYLLKFLDGYFWMFIFCGFCLIFSFLVLLPIKISTLRN"
     gene            complement(4235..5956)
                     /locus_tag="SB143_001532"
     CDS             complement(4235..5956)
                     /locus_tag="SB143_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding protein"
                     /protein_id="HEF9750050.1"
                     /translation="MLRVGIIGFSPRGLSILERLVSKKLGQIINDKLEIYIFDPNSLG
                     SGCHSPKQSSRLLVNTVASQMTIFADETICPNEFFIKGPNFYEFLLSKGYKADKNGYY
                     SRVLLGKYLEHSFQCILKLCSQDISIHIVKEYAQCIIQQEKYFIISGENTKIEVDSAF
                     ITTGHNQNQNNFPMYSAYPLEISTQNISANDAIGIKGLGLSAIDVITMLTSGNGGFFE
                     KLNNELIYNPSGKEPKIFVFSRSNLPLMARAITQKETREQYQAIFFNSTTIKKLKKEF
                     KKLNFEKQILPLIIKEMEYVYSYTYINLKSQEDSFLFRNEYLTSIDTQSVLDKYIPKC
                     DQFNFYSLVNPLQKIIDKQDFYSQLITYLENDIKEARLGNLKSPIKSACDVLRDVRDN
                     LRLCVDFGGLDEESYKFFIHSFVPINNRLCVGPPLVKIEELLALIKANVVNVLHDVTI
                     KHIENTQFQLVDSFNNSYCVNRLIDARINEIKINDNALFQSLIANNLATKFNYGNLEL
                     ECLKIDENFCSINKDNKTIDRLFILGLPTEGIKFYTFILPRPHIASTFLCDSNKAVDS
                     LIKRTQA"
     gene            6317..>6748
                     /locus_tag="SB143_001533"
     CDS             6317..>6748
                     /locus_tag="SB143_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEF9750051.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEITSKIKLISQSGIPVVAHLGLTPQA"
BASE COUNT         2514 a          960 c          986 g         2288 t
ORIGIN      
        1 ttgcccttgg ttttgcctcc aagtgttttg ggtttttatt tgctcataag cttttcacaa
       61 aacagctttt taggacaatt tttaaaagaa tattttaacc tttctttggt ttttagcttt
      121 gaaggtttgg tatttgcttc tttgattttt tccctaccct ttatggtaaa tcctttacaa
      181 agcgcttttt catcgattaa tcaaaaccta cttgatgctt cttatactct aggaaagggt
      241 aaaatttaca cactttttag agtaattttg cccaattcta aagtagggat ttttagcgct
      301 tgtgcgatga gttttgcaca cactatcggt gaatttggag tggtgatgat gataggtgga
      361 cataaaaaag gtgaaacttt ggtcgcaagt attgctattt atgatgagct tgaagtttta
      421 aactatactt tagcacatca atacgctttt actttatttg cgatttcttt taccatactc
      481 ttaagtcttt attttgtaaa taaaaaaatc gctctatagg ccacttttat gataaaaatc
      541 gatataaaac ttcccatcaa cacagcaaaa ggcaagaagc aactagaatt aaacacttgc
      601 ttaaaagcaa atgaaatcac tgctattttt ggggaaagcg gtgcgggaaa aacaactcta
      661 cttaaaatca ttgcaggaat tataaaacct gaatttggac gcatagaagt agaagatgaa
      721 ctctggcttg atacccaaaa aaatatcaat ttatctatac aaaaaagaaa aatcggcttt
      781 gtttttcaag attacgctct ttttccaaat atgagcgtaa aagaaaacat ttcttatgct
      841 gcgacttcaa aacaaaaagc agaagagctt ttaagcttaa tgaatttaga aaatttagcc
      901 aaaatttatc ccaaaaattt aagtggtgga caagcacaaa gagtggcttt agcaagagct
      961 ttggcaagag agccacaaat tttactttta gatgaacctt tgagtgcatt ggactttaaa
     1021 atgcgatctt ttttacaaga tgaacttgtg aaaattttac aacattttaa aatcacgact
     1081 ttattagtta gtcatgattt ggctgaaatt tacaaattaa gccatagaat tttagagctt
     1141 agtgatggaa aaatcatcaa agatgcgaga acaaatgaat tttttacctc atcaaattta
     1201 agtgcgaaat tgcgcttgag cgcgacttta cttgagatga aaaaaagtga tattttagtt
     1261 atttttactt tgcttttaaa tcaagatatc gttaaaatca cacttagcga agaggaattt
     1321 ttaaaatctt ataaagatgt aaaaatcggc gatacgcttt tgctatccat aaaagccttt
     1381 aaccctatca tcgtaggaaa actttaagaa agtaagtctt taaattccat ttgaaattct
     1441 tttaagattt gatataaatg agtaagatta taattatttt cttgtttgat tttagcaata
     1501 attggtaatt tgcgccctaa aattcccact aacgaaaact aggaattttg cgttttaatc
     1561 ttttttaata ttttcaacat tcttatcaaa aaaatgctta tatcttgttt caagccgcac
     1621 ttgctaattt ttataatagc aataataaac aaaattcaat gccttaaatt aaccgcaaat
     1681 tattctaaaa tttgctccaa atttggagca attctcattt ttaatttaaa taaaatagtt
     1741 ataattgttt tcattgtttt aaaattagct tagggtaaaa acaatgaaaa aaatcgtcgc
     1801 tagtttaatc tgtattttgt ttttgggtgg gtgtagcaac aaaacagcag gaatggtggc
     1861 gataggcgtg atccattcgc ctcaaattgt agcacttggt gcagttatcg tggttacttc
     1921 tccattttgg attttggaaa aaatagaaga aaatagccgt aaagccaaag gagcgaatag
     1981 aaaaagattc tagtttgtca gttccttttt ataagcttgt agatttatgc aatcctaaat
     2041 ttaatttaga accaaaaatt acagatgagt ttttagaaga gattaaacac gagctttctt
     2101 attttaaaga gcgcgaaaaa tattttttgc aaatattaaa taagttaaat gatgaaaaaa
     2161 gcgaagaata taaaaaattc acacaagaat atgaaaaaaa tagccaaaaa tatattcttg
     2221 cttataaaaa ggtttttgca agtgaaaatg atgcttggtt taatgaaatg gataaaaaaa
     2281 gattgtatgc tttttataaa tcttatgagt attatccttt tattgaaaat gctaaaacat
     2341 taaatgaaaa taaagttttt gctgtaagtg atagagaatt tgatgatttt tattttgatg
     2401 atgaattttt agtgaaaaat gaaagtgaaa ttttagaaaa actcagccaa gaacacatta
     2461 aagaatacaa aaaatttaaa gaaaaaattt ttaaagattc taaaaaaaat caatcaaaat
     2521 gaaattgctt taaatgattt tatgatattt ttcaaatcga aaatgagaaa tttaaaccca
     2581 ttttaggcta tgtttcttat aaacttgtaa atgatcctga aatacattgc acttttatta
     2641 atggaaaaat gtaaatcttg tttttacatt tataatttta ccttatctat actttattta
     2701 gttatttaaa tttacatatt aagcttaaat atatcatata attgtaaaaa atttattata
     2761 atatagcaaa attaaaatta aggagaaatc atgccttttg ttaatattag aatcacaaaa
     2821 gaaaatggcg aacctacact caagcaaaag caagaattga ttgaaggtgt tacagattta
     2881 cttgctaagg ttttaaacaa aaataaagct tctactgttg taattatcga tgaaattgaa
     2941 atggataatt atggtttagg tggaaaaact atcactgaag taagaaaaga gcagaaaaaa
     3001 agctagtttt ctttgcagtt agtgatcaaa gcctatttgc ttttacctat attctgcttt
     3061 aaatttaaag cagaacttta tagctgaagt tagtttcgca aagtgcttat ttttataggc
     3121 aaaagcacaa gaaagctaaa tatcaaacaa aacccacaaa agataaacat ccaaaaataa
     3181 ccatctaaaa attttaacaa ataagcaaaa agaaaagaaa aaatagcttg aaaaattcca
     3241 aaagcaaggg ttagaaaact tgagcttgta ggaaaatgtt ttttagaaac aatttttaat
     3301 gctagggcat tagtaagtgt tacattgcct gttgttgtaa agcccataac aaaaatacta
     3361 aagttaagcc aaaacaaatc actggcaaaa gctgcgataa aacaagataa ggctttgaaa
     3421 aataatatta caatgtgtgc attttttatc ccgattctat cagctaaaat tccactacct
     3481 atacttccta agactgctcc tataccaaaa aaagcccaag atgagccagc aagtagggtt
     3541 gaaaatttta agtctcttac aagataatca acccaaaaaa gcgtgtgagg taaatatcct
     3601 atggcattaa gaatatatga aataataaga agccataatc cataaggaat tttaaattta
     3661 ttatctttat gtattgtttg tttagatctt ttaagtgttc taagtgaaaa aagacttaag
     3721 atgaaagcgc aaaaaaccac accacctaaa acaatccaaa ccaaatcgat attgatatta
     3781 gcgataaatg gtaaagtaaa gccactaaca acagcaccaa gtcctatacc gctaaataca
     3841 aaacccccta tacgccccct aaaacgttct ttaacataag gcaaagaaag tggtgcagca
     3901 agtatcatca aagaagcgct tgccacacca gcaaaaaatc tccatagcca cgcccatata
     3961 aaaggtagac tttccatcat gcaagcaaaa aaacttaaag agattattaa aaaacttagt
     4021 tttgcaatat tttcaagact tataaatttt cttaagaagt taatgaaaaa actaccaaaa
     4081 atatacccaa ctaaaactgc aatacccagc tgaatgcttt gattttcatt caatctgccg
     4141 gatattatca taatagggat taaaacaaca tatccaaatc ttgccaaacc atttgccaca
     4201 aaggttgaaa gaaaacaaat cataatgcgc aagatcatgc ttgtgtcctt ttgataagag
     4261 aatctacagc tttatttgaa tcgcaaagaa atgtggaggc aatgtgaggg cgaggcaaaa
     4321 taaaagtata aaatttaatt ccctctgtag gtaatcccaa aataaataac ctatcaatag
     4381 ttttattatc tttattaata gaacaaaagt tttcgtcaat tttcaaacat tctaattcta
     4441 aatttccata attaaatttt gtagctaaat tattagcgat aagagattga aaaagtgcat
     4501 tatcattaat tttaatttcg ttgattcttg cgtcaattaa tctatttaca caataagaat
     4561 tgttaaatga gtcaactagt tgaaattgcg tattttctat atgttttatt gtaacatcgt
     4621 gtaaaacatt gacaacatta gctttaatta aagctaataa ttcttctatt ttaacaagtg
     4681 gaggaccaac acataatcga ttattgatag gaacaaacga gtgaataaag aatttatatg
     4741 actcttcgtc aagtcctcca aaatcgacac ataacctcaa attgtctcta acatcacgta
     4801 aaacatcaca agctgactta attgggcttt ttaaattgcc caagcgagct tcttttatat
     4861 cattttctaa ataagtaatt aattgagagt aaaaatcttg cttatctatg attttttgca
     4921 atggattaac caaagaatag aaattaaact gatcacattt gggaatatat ttatcaagca
     4981 cactttgtgt atcaatactt gtaagatatt catttctaaa taaaaaagaa tcttcttgtg
     5041 attttaaatt gatatatgta taactataca catattccat ttctttaata ataagtggca
     5101 agatttgctt ttcaaaatta agttttttaa attctttttt taatttttta atagtcgtgc
     5161 tattaaaaaa tatagcttgg tattgttctc tagtctcttt ttgagtaatt gctcttgcca
     5221 taagtggcaa attcgatcta gaaaatacaa aaatttttgg ttctttacct gatggattat
     5281 aaattagttc gttatttagt ttttcaaaaa aaccaccatt cccacttgtt agcattgtaa
     5341 ttacatctat ggcactaagt cctaatcctt tgatacctat tgcatcatta gcagaaatat
     5401 tttgagttga aatttccaaa gggtaggctg aatacatagg aaaattattt tgattttgat
     5461 tatgtcctgt ggttataaaa gcactatcta cttcaatttt tgtattttct ccagaaatga
     5521 taaaatattt ttcttgttga ataatgcatt gtgcatattc tttgacgata tgtatagata
     5581 tatcttgaga acagagtttt aaaatacatt gaaaagaatg ctcgagatat tttcccaata
     5641 gaactctaga gtaatatcca tttttatctg ctttatagcc ttttgataat agaaattcat
     5701 agaaattagg acctttgatg aaaaattcgt taggacatat tgtttcatcg gcaaaaatag
     5761 tcatttgaga agctacagta ttgactaaca atctgctaga ttgcttagga ctatgacaac
     5821 cgctaccaag agaatttgga tcgaaaatat aaatttctaa tttatcatta ataatttgac
     5881 caagtttctt tgagacaagc ctttctaaaa tacttaaccc tctaggacta aaaccaatta
     5941 ttccaactct taacatttat tttccttttt tcttatgatt ttatagtatg cattatttga
     6001 atattataaa aaatcacaaa atttgcaaat ttttaaatca attgtaaaaa atttctctaa
     6061 caatgttaca ttattagtca tttaaatgaa tatttataaa tctaacaata tggctaatat
     6121 attaagactt atattaatca aaataaagac ttgtataaaa atttattatt tttagaattt
     6181 attagtattt aattgtaacc attaaagcaa tccatcgatt aaatataact tactttatca
     6241 ttcatttact atttatgaaa aattatatgc tagttttttg cttattattt tatagctaaa
     6301 aattgaggta tgcaaaatga gaaaaagtat gattagtttt ttggaaaaaa aggccaaaaa
     6361 tgaaaaaata accatggtaa gtgcgtatga ttatcatagt gcaagaattt tagacaatag
     6421 cgatatagat attatattgg ttggagattc attagccatg acggtacttg gtatgcaaga
     6481 tactttaagt gttactatgg atgaaatgtt gatttttacc aaagctgttt ctcgcggagc
     6541 taaaaagtct ttcgtacttg ctgatatgcc ttttatgtct tatcaaagtt cagatcgtga
     6601 cgctatctta aatgcctcaa gatttatcaa agaaagccac gcaaatgggg taaaagtgga
     6661 agggggtata gaaatcacaa gtaagattaa attgatttcc caatcaggaa tacccgtcgt
     6721 tgctcaccta ggactaaccc cacaagct
//
LOCUS       DARAII010000097         6737 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.097, whole genome shotgun sequence.
ACCESSION   DARAII010000097 DARAII010000000
VERSION     DARAII010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6737
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.097"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1573
                     /locus_tag="SB143_001534"
     CDS             <1..1573
                     /locus_tag="SB143_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEF9750052.1"
                     /translation="FDTDDDGIPDDNLAAPINPNNLYNQPRSQLFKVEYKSDISEAIL
                     NYRAYNNNLAGRKITNDTYQIDYRLNPDSNLLDLKFLFAYNDGKQKYNQDKTWGYHDM
                     SGIKTKNRAVTFDLSNTMNKEFSQDSNLYFTYGVNILNNHYSNDFPQDRVLLPYILTS
                     FYPKGKQDIKTFYLDTSFTKGIFTLNSNVNWINAQLSGYKGVCSMANPYCQPKNATNL
                     EKDYNNFNYSLMLSADIHPLFNPFISYSKSHRIPNVQEYFFTHDAGLEHNMNTFLRAE
                     SANTYQIGFNSFAHEILNNNDTLGFKVLYYDTKVKNYIYNRRYWQKADNAIFIMQLND
                     DEKAKFHGVELEFKYDTGFFYSILSYTYQKSKHKFSDTESLETGGAQSGQSQFAQLPE
                     HYANLDMGVRLFEEKLTLGALAKYTGKAKRVAPVGSLEDDPSNPDAIAPLKTTDELPK
                     IPTIVDLYANYKILKNFTIKAEMQNLFDKNYMDALYTYNTGDSQNAGGLFNPIYIYNN
                     SARGRTFIVSFEYKY"
     gene            1585..2334
                     /locus_tag="SB143_001535"
     CDS             1585..2334
                     /locus_tag="SB143_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEF9750053.1"
                     /translation="MLKKMFLFCFLLLNLNATDTNLSFDSSKIETKAPKIELSLSSLY
                     QNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDSSIQKIKELKNLNELDQT
                     KDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASIGASA
                     PFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLFYNYL
                     TRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            2321..2731
                     /locus_tag="SB143_001536"
     CDS             2321..2731
                     /locus_tag="SB143_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEF9750054.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKVD"
     gene            2734..3480
                     /locus_tag="SB143_001537"
     CDS             2734..3480
                     /locus_tag="SB143_001537"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEF9750055.1"
                     /translation="MKSGMIFGFVLSLILHALVLIFFLFSFYTQEKSSGVDFKQGLEF
                     ASIMMVSELPIGELKEVSIDQKKSNSQDKNKKQDEKMSLNSQDKNAVLKAQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQIKSYQALLMAHLAK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAVLNDEVLSLFKRASPLP
                     KPPKEMLKDGEKISFVMPIDYNIKDYLGKK"
     gene            3536..4750
                     /locus_tag="SB143_001538"
     CDS             3536..4750
                     /locus_tag="SB143_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEF9750056.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYMQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNTTQKAEEKFENNASLIQEANQKAQENFQKANIINKGALYYYQSL
                     LEYFFNSRAMIEKESYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMT
                     FSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIRALMTLVAFIPILWTLSD
                     VVSKALFANLSENSSFYFLKNIDGLLVYVALLISLGGLIVSWFVGIKLPGLEYNNQKA
                     EAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVI
                     VPFLIMAPGLFAGAIGLGIVMQINNAFNQVRSSFSVFITNWTTITQLRSIYKRLKEFE
                     KNIEYAKNKNHL"
     gene            complement(4741..5868)
                     /locus_tag="SB143_001539"
     CDS             complement(4741..5868)
                     /locus_tag="SB143_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9750057.1"
                     /translation="MLKILIIFCATLTLSIVYAPQPIAPLLSNYFHVNLHQISWIISV
                     TLIPLAVAPLVYGYLLEIFSLKKILVVSLFLCSIFGIIGNLNDNFYFFLFLRFLQALC
                     IPAILTALLTLLSRLESDNIQKNTAIYVGATTFGGFVGRVFGSFLSDLFSWHFALNFF
                     SILMMVCGFLFLFFKEHPISLNTQTSLRDFLPFVKELRFMVILFCVFTIFFSFQSIVS
                     FLPFHLKESIKDITQTQIGLVYLGFLTGVISSLLIGKTIEILGSKIRTAIFGFLVFIA
                     GCFCMIVGNFYFAFFAMFVFCSGMFISHCIFSGILNSIADKKGLANGIYLTFYYSGGA
                     LGSVLPSFYYESFGWEFLCIFTAFLLFIALIIFSKFRYFYK"
     gene            5986..>6737
                     /locus_tag="SB143_001540"
     CDS             5986..>6737
                     /locus_tag="SB143_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEF9750058.1"
                     /translation="MDPSQVLDLNQTLPTASFDAGYSILMVVIALALVLLNGFFVLSE
                     FSIVKVRRSKLEEMVKEKKVGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAI
                     AKMLEIPLANLGFNGVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAIADRAVLWVA
                     RPLHWFWILFLPCIKIFDFLAAMTLKLFGIKPAKESELTHSEEEIKIIASESQKGGVL
                     DEFETEIIRNAVDFSDTVAKEIMTPRKDMICL"
BASE COUNT         2475 a          939 c         1106 g         2217 t
ORIGIN      
        1 ttttgacact gatgatgatg gcattccaga tgataattta gcagcaccta taaatccaaa
       61 taatctttat aatcagccta gaagtcaact ctttaaagta gaatacaaat ccgatattag
      121 tgaggcgatt ttaaactata gagcttataa taacaatctt gcgggtagaa agattacaaa
      181 tgatacttat caaattgact atcgtttaaa tcctgattct aatcttttgg atttaaaatt
      241 tttatttgct tataatgacg gaaagcaaaa gtataatcaa gacaagactt ggggttatca
      301 cgatatgagt ggaattaaga ctaaaaatcg agcggtaact tttgatctta gcaataccat
      361 gaataaagaa ttttcacaag attcaaattt gtattttact tatggggtta atattttaaa
      421 taatcattat agtaatgatt ttccacaaga tagagtgctt ttgccttata ttttgactag
      481 tttttatcct aaaggaaaac aagatattaa aaccttttat ttggatacga gttttacaaa
      541 gggaattttc accctaaatt ctaatgtcaa ttggatcaat gcacaattaa gtggatataa
      601 gggagtttgt agtatggcta atccttattg tcagccaaaa aatgcgacaa atttagaaaa
      661 ggattacaat aattttaatt attctttaat gctttcagca gatatccatc cactttttaa
      721 tccttttatt tcttattcta aaagccatag aatcccaaat gtccaagagt atttttttac
      781 ccatgatgca ggtttggagc ataatatgaa cacattttta agggctgaaa gtgcaaatac
      841 ttatcaaata ggttttaatt cttttgcaca tgaaatttta aacaataatg atactttagg
      901 ttttaaagtg ctttattatg atactaaggt aaaaaattat atttataata gaagatattg
      961 gcaaaaagct gacaatgcta tttttattat gcaattaaat gatgatgaaa aagctaaatt
     1021 tcacggggtt gaacttgaat ttaaatacga tacgggattt ttttattcta tactatctta
     1081 tacttatcaa aaatccaagc ataaattttc agatacagaa tctttagaaa caggtggagc
     1141 gcaatcaggc caaagccaat ttgcccaact tccagagcat tatgctaatc ttgatatggg
     1201 tgtaagatta tttgaagaaa aactgactct aggagctctt gccaaataca caggaaaagc
     1261 aaagagagta gctcctgtag gcagtttgga agatgatcca agtaatcctg atgctatagc
     1321 tccgcttaaa actacagatg aattaccaaa aataccaact atcgttgatc tttatgcaaa
     1381 ttataaaatt ttgaaaaact ttacaatcaa agcagagatg caaaatttat ttgacaaaaa
     1441 ctatatggat gcgctttata cttataatac tggtgatagt caaaatgctg gagggttatt
     1501 taatcctatt tatatttata ataactctgc tcgcggtcgt acttttatag taagttttga
     1561 atataaatat taaggaatat acaaatgtta aaaaaaatgt ttttattttg ttttttattg
     1621 ttaaatttaa atgcaacaga tacaaattta tcttttgatt cttctaagat agaaaccaaa
     1681 gcacctaaaa tagagctttc tctttctagt ctttatcaaa atgctgatga ggtggtaaaa
     1741 ggtgttattt atatattggt tttattttcc attttagcat gggcagtttt tatttccaag
     1801 cttatgcaat tttattttat gaaaaaaaat ttagactcat ccatacaaaa gataaaagaa
     1861 ttaaaaaatc tcaatgaatt agatcagaca aaggattttg caggtgtttt atctttagaa
     1921 attcaagatg agcttgaaaa aagtgaatat aaaaatgatc acataaaaga gcgtatagaa
     1981 ttgcgtttgc aaaataccat ctcaaagcaa atcacagcaa gcaaaaatgg cttgagcttg
     2041 cttgcgagta taggtgctag cgcacctttt atagggcttt ttggaacagt ttgggggatt
     2101 atgaatgcat ttataggtat agcaaatctt ggcaatgctt ctttggcagt cgttgcaccg
     2161 ggtatagctg aagccttgtt tgctacagct tttggcttga tagctgctat ccctgcggtg
     2221 cttttttata attatcttac aagaaaaaat ttaaaactta tgcaccattt agatgagctt
     2281 gcaaattttg tctatatact ttttcatagg agttatttta atgataaaaa ctgaaatggc
     2341 tcacaaagaa gaggagttaa gtgagatcaa tataactcct tttatagata ttatgcttgt
     2401 attattgatt gtttttatgg ctgttactcc tcttatcaca agttctatca aaatagaatt
     2461 acccaagagt tcgcagcaag cagaggataa gcttaaaaat cccatcatac tttatttaaa
     2521 tactgataat actttggcta ttaatgatga taaattaagc ctagaaaatc tttcaagtgc
     2581 tttagatata aaaaccaaag gcaataaaga agaaattatt tattttcata tcgataaaag
     2641 tgtaaagtat gaagatatta tgcaagtaat gcaaaaatta aaagagaatg gctatggaaa
     2701 aatagctctt tcaagtaaga aggtggatta attatgaaat ctggtatgat ttttgggttt
     2761 gtgttaagtt tgatattaca tgctttagta ttaatatttt tccttttttc tttttatact
     2821 caagaaaaat caagtggtgt tgattttaaa caaggattag aatttgcttc cattatgatg
     2881 gtatcagagc ttcctattgg agaattaaaa gaagtttcga ttgatcaaaa aaagagcaat
     2941 tctcaagata aaaacaaaaa acaagatgaa aaaatgagtc ttaactccca agataaaaat
     3001 gctgtattaa aagctcaaaa aaagatagaa aaacaagatg aaaatcaagc ccaaaaagaa
     3061 atagctaatg caagtgaaaa ttcaaaattt aaaaatgaat cgctcagtgc tccgctacaa
     3121 agtaatgaag ataaaacaca gactatagta agtggcaatg ctaaagaaca aattaaaagc
     3181 tatcaagcct tgcttatggc tcatttggct aaatttaaaa aatatcctca agaagcgata
     3241 atgcaaaagc aagaaggtgt tgtaagaatt cgtgtgagta tcgatgaaag tggaaatgtc
     3301 ctaagtaagg agcttaaaaa atcttgccct tatgcagtgc ttaatgatga agttttaagt
     3361 ttatttaaaa gagcttctcc attgccaaaa ccacctaaag aaatgttgaa agatggtgaa
     3421 aaaatcagtt ttgttatgcc tattgattac aatattaaag actatttggg caaaaaataa
     3481 actcttgatt aaataaaatt gattaaaatt ttcgttttga gattaaggcg gtggtatgtt
     3541 ttcttcgttt tttgcaagta aaaaatgggc tttatgggct tatttggggc tttttttgct
     3601 tttatttttc ttatatatgc aaacaagctt aaatgttgca atcaattcat ggtatagtga
     3661 tttttataat gttttacaaa aaccaaaaat agagctttta gattctaata caacgcaaaa
     3721 ggcggaagag aaatttgaaa acaatgcaag tttaatccaa gaggccaatc aaaaagcaca
     3781 agaaaatttc caaaaagcta atattatcaa taaaggcgca ctttattatt atcaaagttt
     3841 attggaatat ttttttaatt ctagggctat gattgaaaaa gaaagctatt ctgcgagtga
     3901 tttttatgct ttgattttag tatttttagc tattgctatt ccttatgttt taattgcaac
     3961 gattaatatt tattttgcta gtgtttacgc ctttaagtgg cgtgaagcta tgactttttc
     4021 ttatttgaaa ttttggaaaa ataaggatga taacatagaa ggaagttcgc aaagaattca
     4081 agaagatact tataattttt ctaaaattgt agaaagctta ggacttagtt ttataagagc
     4141 tttaatgact cttgtagctt ttataccgat tttatggact ttaagcgatg ttgtaagcaa
     4201 ggctttattt gcaaatttaa gtgagaattc tagcttttat tttttaaaaa atatcgatgg
     4261 cttgcttgtt tatgttgcgc ttttgatttc tttaggggga ttaatcgtat cttggtttgt
     4321 agggattaaa ctaccaggac ttgaatacaa caatcaaaaa gctgaagcag cttttagaaa
     4381 agaacttgtt tatgctgaag ataaccgcaa agaatacgcc aaaaatgaaa ccatgataga
     4441 gctttttaca ggacttaaat tcaattataa aagacttttt ttgcactatg gatattttaa
     4501 tatttggttg attttatttg agcaaatgat agttatcgtt ccatttttaa tcatggcccc
     4561 aggacttttt gcaggagcta taggacttgg tattgtaatg cagattaaca atgcttttaa
     4621 tcaagtaaga agttctttta gcgtttttat caccaattgg acaaccatca ctcaacttag
     4681 aagtatatat aagcgtttaa aagaatttga aaaaaatatc gaatacgcga aaaataaaaa
     4741 tcatttataa aaatatctga atttgctaaa aattattaag gcgatgaaaa gtaaaaaggc
     4801 tgtgaagata cataaaaatt cccagccaaa actttcataa taaaaacttg gcaatacaga
     4861 acccaaagca cccccactat aataaaatgt caaataaatt ccattagcca agcccttttt
     4921 atccgcgatc gaatttaaaa tccctgaaaa tatacaatga cttataaaca ttccgctaca
     4981 aaatacaaac atagcaaaaa aggcaaaata aaaattccct actatcatac aaaaacaacc
     5041 cgctataaaa accaaaaacc caaatatagc tgtgcgaatt tttgagccta aaatttctat
     5101 ggttttacct ataagtagtg agcttatcac tccggttaaa aatcctaaat aaacaagtcc
     5161 aatttgagtt tgggtgatat cttttatgct ttctttaaga tgaaaaggta gaaaacttac
     5221 tatactttga aaagagaaaa agatagtaaa aacacaaaat aatatcacca taaatctaag
     5281 ctctttaaca aagggtaaaa aatccctcaa ggaagtttgt gtgtttaagc ttataggatg
     5341 ttctttaaaa aataaaaaca aaaaaccaca aaccatcatc aaaatgctaa aaaaattcaa
     5401 ggcaaaatgc caagaaaaga gatcactcaa aaagctccca aaaacccttc caacaaaacc
     5461 accaaaagtt gtagcaccta cataaatggc tgtatttttt tgtatattat cgctttctaa
     5521 gcggctaagc aaggtaagaa gtgctgtaag tatggcaggt atacaaagag cttgtaaaaa
     5581 tctaagaaat agaaaaaaat aaaaattatc gtttaagttc ccaataatac caaaaataga
     5641 acataaaaac aatgaaacaa caagaatttt ctttaaggaa aaaatttcaa gtaaataacc
     5701 ataaaccaaa ggcgcaacag ccaggggaat aagtgtaaca ctgattatcc aagaaatttg
     5761 gtgcaaattt acatgaaaat aattagataa taaaggtgct ataggttgtg gagcatagac
     5821 aatagatagg gttaatgtag cacaaaaaat gatcagaatt ttaagcattt tcatgtctta
     5881 aattaaactc caatgcaaat taattttagc ttaaaaacca tttttaagct aaaattttac
     5941 ttttaattgt gtataattaa atattttatt tataaggagt ttttattgga ccccagtcag
     6001 gttttagatt taaaccaaac tttacctaca gcgtcttttg atgcaggata ttctatactt
     6061 atggttgtca ttgcactagc tttagtgctt ttaaatggct ttttcgtttt gtctgaattt
     6121 agtattgtta aagtgcgtcg ttcaaaactt gaagaaatgg ttaaggaaaa aaaagtaggt
     6181 gctaaaaaag cactagaagt tacttcaaga cttgatacct atcttagtgc ttgtcagcta
     6241 ggaattactt taagttcgct agcccttggt tggataggtg agcctgctat agcaaaaatg
     6301 ttggaaattc ctcttgcaaa tcttggattt aatggagtta ttatccatac tatagctttt
     6361 attatcgcct ttagtatcat cactcttttg catgtggttt taggcgagct tgttccaaaa
     6421 agcattgcaa ttgctattgc agatagagct gtactttggg tggcaaggcc tcttcattgg
     6481 ttttggatac ttttcttacc ttgtattaaa attttcgatt ttcttgcggc catgactttg
     6541 aagctttttg gcatcaaacc tgccaaagaa agcgaattaa cccatagtga agaagagatt
     6601 aaaatcatag caagtgaaag ccaaaaaggc ggtgttttgg atgaatttga aactgaaatt
     6661 atccgtaatg cggttgattt ttcagatact gttgcaaaag aaatcatgac acctcgcaaa
     6721 gatatgattt gtctaaa
//
LOCUS       DARAII010000098         6726 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.098, whole genome shotgun sequence.
ACCESSION   DARAII010000098 DARAII010000000
VERSION     DARAII010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6726)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6726)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6726
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.098"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..2475
                     /gene="rpoB"
                     /locus_tag="SB143_001541"
     CDS             <1..2475
                     /gene="rpoB"
                     /locus_tag="SB143_001541"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEF9750059.1"
                     /translation="KERAGFEVRDVHSTHYGRICPVETPEGQNIGLINTLSTYAKVNE
                     LGFVEAPYRKVANGKVTNEVVYLTATQEEGLFIAPASTKVDAKGNIVEEFVEARQDGE
                     TILARREEVQLIDLCSGMVVGVAASLIPFLEHDDANRALMGSNMQRQAVPLLTASAPI
                     VGTGMEQIIARDAWEAVKAKRGGVVEKVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQ
                     NTNYIQHPIVKKGDIVKAGQIIADGPSMDQGELAIGKNALIAFMPWNGYNYEDAIVVS
                     ERIIREDTFTSVHIYEKEIEARELKDGIEEITKDIPNVKEEDVAHLDESGIAKIGTHI
                     KPGMILVGKVSPKGEVKPTPEERLLRAIFGEKAGHVVNKSLYATASLEGVVVDVKIFT
                     KKGYEKDDRAIKSYDKEKMALEKEHHDRLLMMDREEMLRVCALLSKAPLNSDQKIGDK
                     NYKKGQTADISELEKINRFTLTTLIKAYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKL
                     EILEKDDILPSGVIKLVKVYIATKRKLKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNG
                     KSVDIALNPLGVPSRMNIGQILESHLGLVGLRLGDQIQEIFDRKQKDFVKELRAKMLE
                     ICSIPRLVNEKEFIKNLSDEELLNCARDWSKGVKFATPVFEGVNIEEFAKLFEIAKID
                     MDGKTELYDGRTGEKIAERVHVGCMYMLKLHHLVDEKVHARSTGPYSLVTQQPVGGKA
                     LFGGQRFGEMEVWALEAYGAAHTLREMLTIKSDDVEGRFSAYKALTKGENVPATGIPE
                     TFFVLTNELKSLALDVEIFDKDEDNE"
     gene            2468..>6726
                     /gene="rpoC"
                     /locus_tag="SB143_001542"
     CDS             2468..>6726
                     /gene="rpoC"
                     /locus_tag="SB143_001542"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEF9750060.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENAGDAYYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTNNEDAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKMGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVTENMWNKVLKKKDIAALVDHVYKQGGLQ
                     TTASFLDKLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKTTNNTLSRDMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITVEDCGTHEGVEINEITADSSIIETLEERILGRVIAEDVIDPITNSVLF
                     TEGTLIDEEKARILGESGVKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKDI
                     VANRRNAAILLVEPKIKAPFKGIINIENIHEDVIVSIKDKKQEAKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGAEVEENESIVEMIKEGWNVPNRIPFASEILVKDGDPVVQ
                     NIKAGEKGILKFYILKGDGLDRVRNIKKGDIVKEKGFFVVVADENDREAKRHYIPRES
                     RIEFNDSEEVNFDSIIASAPKQEKSVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSADE
                     QIDEATGKRSLVINEYLPSGVRPTLIIAGKGDKAVRYQLEPKTVIFVHDGDKISQADI
                     LAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERLIIQ
                     AEDGTSAEYLIDKSKHIQVREGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISEI
                     QQVYRGQGVVISDKHIEVIVSQMLRQVKIINSGHTKFIEGD"
BASE COUNT         2406 a          928 c         1451 g         1941 t
ORIGIN      
        1 aaagaaagag caggttttga agtacgtgat gttcactcga cacattatgg tagaatttgt
       61 ccagttgaaa cacctgaagg tcaaaatatt ggtttgatta acactctttc tacttatgca
      121 aaagtaaatg aacttggctt tgttgaagca ccatatagaa aagttgcaaa tggtaaagtg
      181 actaatgaag ttgtttatct tacagcgaca caagaagaag gcttgtttat cgcaccagct
      241 tcaactaagg ttgatgctaa aggcaatata gtagaagaat ttgttgaggc tagacaagat
      301 ggtgaaacta tacttgcaag acgcgaagaa gtgcaattaa tcgatctttg ctcaggtatg
      361 gttgttggag ttgcagcttc tttgattccg tttttagagc acgatgatgc aaacagagcg
      421 ctaatgggtt caaacatgca acgtcaagct gtgccacttc ttactgcttc agctccgata
      481 gtaggaacag gtatggaaca aattattgcg cgtgatgctt gggaagctgt taaagcaaag
      541 cgtggcggtg tggttgagaa agtggataat aaaagcattt ttattttagg tgaagatgat
      601 aaaggtccat ttattgacca ttacactatg gagaaaaatt taagaaccaa tcaaaataca
      661 aattatattc aacaccctat tgttaaaaaa ggtgatatag taaaagcagg acaaattatc
      721 gcagatggtc cttctatgga tcaaggcgaa cttgctatag gtaaaaatgc tttaatcgct
      781 tttatgcctt ggaatggtta taactatgag gatgctatag tagtaagtga aagaattata
      841 cgcgaagata cttttactag tgttcatatt tacgaaaaag aaattgaagc aagagaacta
      901 aaagacggta tagaagaaat taccaaagat attccaaatg taaaagaaga agatgttgcg
      961 catcttgatg agagcggtat tgcaaaaatt ggtacccata ttaaaccagg tatgattttg
     1021 gtgggtaagg tttctccaaa aggtgaggtt aaaccaactc ctgaagaaag acttttaaga
     1081 gcgatttttg gagaaaaagc aggacatgtt gtgaataaat ccctttatgc aaccgcttct
     1141 ttagagggtg ttgttgtgga tgttaaaatt ttcactaaaa aaggctatga aaaagatgat
     1201 cgcgcaataa aatcttatga taaagaaaaa atggctttag aaaaagaaca tcatgataga
     1261 cttttgatga tggatagaga agaaatgctt cgtgtttgtg ctcttctttc caaagcccct
     1321 ttaaatagcg atcaaaaaat tggagataaa aattataaaa aaggacaaac tgcagatatt
     1381 agcgaacttg aaaaaatcaa tcgttttact ttaacaactt tgattaaagc ttattctaaa
     1441 gagattcaaa aagaatacga tgatttaaaa aatcatttcc aaaatgagaa gaaaaagctt
     1501 aaagctgaac atgatgaaaa acttgaaatt ttagaaaaag atgatatctt accaagtgga
     1561 gtaattaagc ttgttaaggt gtatatcgca acaaaacgca agcttaaagt gggcgataaa
     1621 atggcaggac gccatggaaa caaaggtata gtttctacta tagtacctga agtggatatg
     1681 ccttatttgc caaatggaaa aagtgtggat attgcactca atccacttgg ggttccaagc
     1741 cgtatgaata tagggcaaat tttagaaagc cacttaggtc ttgtagggct tagactgggt
     1801 gatcaaattc aagaaatttt tgacagaaaa caaaaagatt tcgttaaaga attaagagca
     1861 aaaatgcttg aaatatgttc tattccaaga cttgtaaatg aaaaagaatt tattaaaaat
     1921 ttaagcgatg aagagctttt aaattgcgca agagattgga gcaagggtgt taaatttgca
     1981 actcctgttt tcgagggagt caatatagaa gagtttgcaa aactttttga aatagcaaag
     2041 attgacatgg atggcaaaac agaactttat gatgggcgca ctggagaaaa aatcgctgag
     2101 agagttcatg taggatgtat gtatatgcta aaacttcacc atttggtcga tgaaaaagtt
     2161 catgctagaa gtactggacc ttatagtttg gttacccagc agcctgtggg cggtaaagca
     2221 ctctttggtg gacaaagatt tggtgaaatg gaagtttggg cgcttgaagc ttatggagcg
     2281 gctcatacct taagagagat gcttactata aaatccgatg atgttgaagg tagatttagt
     2341 gcttataaag cgcttaccaa aggagaaaat gtcccagcaa caggaattcc ggagacattt
     2401 tttgtattga ctaatgagct taagtctcta gctttagatg ttgagatttt tgacaaggat
     2461 gaagataatg agtaaattta aagtaataga aataaaagaa gatgcaagac ctagggattt
     2521 tgaagcattt caacttagac ttgcaagtcc tgaaaaaatt aaatcttggt cttatggtga
     2581 agtaaaaaag ccagagacta ttaattatag aactttaaaa ccagaaagag atgggctttt
     2641 ttgcgctaaa atttttggac ctattagaga ttatgaatgt ctttgtggta aatacaaaaa
     2701 aatgcgcttt aaaggcgtta agtgtgaaaa atgtggagtt gaagttgcaa attcaaaagt
     2761 tcgtcgctct agaatggggc atattgaact tgtaacccca gtagctcata tttggtatgt
     2821 taattctctt ccaagtcgta taggaacact tctaggtgtt aaaatgaagg atcttgaacg
     2881 cgtactttat tatgaggctt atatcgtgga aaatgcagga gatgcgtatt atgataatga
     2941 aagcaccaaa aaagtagaat actgcgatgt attaaatgaa gaacaatatc aaaatttgat
     3001 gcagcgttat gaaaatagtg gctttaaagc aagaatgggg ggcgaagtag tccgtgactt
     3061 gctagcaaat ttagatcttg tggcgctttt aaatcagctt aaagaagaaa tggctgctac
     3121 aaattcagaa gctaagaaaa aaaccattat aaagcgttta aaagttgtag aaaacttctt
     3181 aaattcaaat ttaaatgcaa atacaaataa cgaagatgca gtaccaaatc gtcctgaatg
     3241 gatgatgatt acaaacttac ctgtattgcc acctgatttg cgtcctttgg ttgctttaga
     3301 tgggggtaaa tttgcagttt ctgatgtaaa tgatttatac cgccgtgtta ttaacagaaa
     3361 tacacgtctt aaaaaactta tggagcttga tgcgcctgaa attattatca gaaatgaaaa
     3421 aagaatgcta caagaagctg tagatgcact ttttgataat ggtcgtcgtg ctaatgcagt
     3481 taaaggagca aacaaacgcc cgttaaaatc tttgagtgaa attatcaaag gtaaacaagg
     3541 tcgttttaga caaaacttgc taggtaaaag ggtggatttt tcaggtcgta gcgttattgt
     3601 tgtaggacca aaacttagaa tggatcaatg cggcttacct aaaaaaatgg ctttagaact
     3661 tttcaagcca catttattgg ctaagcttga agaaaaaggt tatgccacta cagtaaaaca
     3721 agctaaaaaa atgatagaaa acaaaactaa tgaggtttgg gaatgtttag aagaggtggt
     3781 aaaagggcat cctgttatgt taaaccgtgc tccaactcta cataaacttt ctatccaagc
     3841 tttccatcct gttttagttg aggggaaggc aatacaactc catcctttag tttgtgcagc
     3901 atttaacgcg gattttgatg gtgaccaaat ggcggtgcat gtgccacttt ctcaagaagc
     3961 gatcgcagaa tgtaaggttt taatgctttc ttctatgaat attcttttgc ctgcaagtgg
     4021 aaagtctgta actgtacctt ctcaagatat ggttttagga atttattatc tttctttgga
     4081 aaaaatgggt gcaaaaggtt cacataagat atgcacaggc attgatgaag taatgatggc
     4141 ccttgaaagt aaatgccttg atattcatgc tagcattcaa actatggttg atggtagaaa
     4201 gattactaca acagcaggaa gacttattat taaatctatt ttgcctgatt ttgttactga
     4261 gaatatgtgg aataaggttt taaaaaagaa agatattgct gcacttgtgg atcatgtata
     4321 taaacaaggt ggtttacaaa ctactgcaag ctttttagat aaacttaaaa atttaggttt
     4381 tgaatatgcg actaaggcag gtatttctat atctatcgct gatattatcg ttcctaatga
     4441 taaacaaaag gctattgacg aggctaaaaa gcaagtaaga gaaattcaaa attcttataa
     4501 tcttggtttg atcacttcag gtgaaagata taacaaaatt attgatattt ggaaaaccac
     4561 taacaatact ctttcaagag atatgatgaa gcttgttgaa aaagataagg aaggctttaa
     4621 ttctatctat atgatggcag attcaggtgc tagaggtagt gcagctcaaa tttctcagct
     4681 tgctgctatg agaggactta tgactaagcc tgatggatcg attatcgaaa cgcctattat
     4741 ttcaaatttc cgtgaaggtt tgaatgttct tgagtatttt atttcaactc acggagctag
     4801 aaaaggttta gcagatactg ctcttaaaac agcaaatgca ggttatttga caagaaaact
     4861 tattgatgtg gcgcaaaatg taaaaattac cgttgaagat tgtggcacac acgaaggtgt
     4921 tgaaatcaat gagatcactg cagatagttc cattatagaa actttagaag agagaatttt
     4981 aggcagggtt atagctgaag atgtaatcga tcctattaca aattctgtac tttttacaga
     5041 aggtacctta atagatgaag aaaaagctag aatattagga gaaagcggtg taaaaagtgt
     5101 aaatattcgc actccaatca cttgtaaagc taaaaaagga atttgtgcaa aatgttatgg
     5161 aatcaatctt ggcgaaggca agcttgttaa gccaggtgag gcagtgggta ttatctctgc
     5221 tcaatctatc ggtgagccag gaactcagct tacgcttaga accttccaca gcgggggaac
     5281 tgcaagtaca gatttacaag atagacaggt aagcgcccaa aaagaaggtt ttataagatt
     5341 ttataatctt aaaacttata aaaataaaga gggaaaagac atagtggcta atcgtagaaa
     5401 tgcggctatt ttacttgtag agccaaaaat taaagcacca tttaagggta ttatcaatat
     5461 agaaaatatc cacgaagatg taattgtttc tataaaagat aaaaaacaag aagcaaaata
     5521 tattcttaga aaatacgatc ttgctaaacc aaatgaatta gcgggcgtta gcggaagcat
     5581 tgatggaaag ctttatttac cgtatcaaag cggtgctgaa gttgaagaaa atgaaagtat
     5641 tgttgagatg attaaagagg gttggaatgt gccaaaccgt attccatttg caagtgaaat
     5701 tcttgtaaaa gatggggatc ctgttgtgca aaatatcaaa gcaggggaaa aaggaatttt
     5761 aaaattctat attcttaagg gcgatggact tgatagggtt agaaatatta aaaaaggcga
     5821 tatagtaaaa gaaaaaggat tttttgttgt agttgctgat gaaaatgata gagaggcaaa
     5881 aagacattac atcccaagag aatcaagaat agaatttaat gatagcgaag aggttaattt
     5941 tgattctata atcgctagtg cgccaaaaca agaaaagtca gttattgcag aatgggatgc
     6001 ttataataat actatcattg cagagattga tggtgtggta agttttgaag atatagaagc
     6061 aggttatagt gcagatgagc aaatcgatga ggcaacaggc aagcgctcgc tagtgatcaa
     6121 tgagtattta ccaagcggag taagaccgac tttgataatt gcaggtaaag gtgataaagc
     6181 agtgcgttat cagttggagc caaaaacggt tatttttgtt catgatggtg ataaaatttc
     6241 tcaagcagat attttggcaa aaactccaaa agcagcagcg aaatcaaaag acattaccgg
     6301 aggtcttcca agggtttcag agctttttga agcaagaaaa ccaaaaaatg cagcagtaat
     6361 tgcagagatt gacggtgtgg ttcgttttga taagccttta cgctcaaaag aaagattgat
     6421 tatccaagca gaagatggca caagcgcaga atatttgatc gataaatcaa aacatattca
     6481 agtaagagaa ggtgaattta ttcacgcagg tgaaaagcta actgatggag tagtttcaag
     6541 tcacgatgtg cttaaaattt taggcgaaaa agccttgcat tattacttga tttctgaaat
     6601 tcaacaagta taccgaggtc aaggggttgt tatttctgat aagcatattg aggttatagt
     6661 ttctcaaatg ttaagacagg ttaaaattat taatagtgga catactaaat ttatcgaagg
     6721 ggattt
//
LOCUS       DARAII010000099         6626 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.099, whole genome shotgun sequence.
ACCESSION   DARAII010000099 DARAII010000000
VERSION     DARAII010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6626
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.099"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..250
                     /locus_tag="SB143_001543"
     CDS             <1..250
                     /locus_tag="SB143_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750061.1"
                     /translation="TIAEALNSETSSQKTYSKADKKSAGRKTIDQKLRRDNLVVCRLN
                     EQEMEILKKLMDLDLVSEYGTYIRKLILKEARALNINS"
     gene            297..6092
                     /locus_tag="SB143_001544"
     CDS             297..6092
                     /locus_tag="SB143_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEF9750062.1"
                     /translation="MSKKTKRQIEDEKDYGGRSLFDLIELEFSQGEENEQQNRELSEH
                     REVTDNIERTSISSNTPSVDRQENSTIQFDNTREMGRVLSEHNQESRNVRSHDTSITT
                     SSNGISNFGEQRSEQEERSGANRYGDTSGRADKSQSIHSDRTPNLFSFISRNDDERQG
                     TGTRRNNQQSVLETATRNDGYERRSLKSGQKLDFVSDDEIYLGSLKDRFQKNLQAIKL
                     LKTIEQENRYATKQEQEILNKFSGWGGIPQAFDHQNKEWEKEFKELISTLDYVEYEKA
                     KTSTLDAFYTPKIIIDTIYQGLNQLGFNNDDHTKEIFEPSAGIGSFLSYAKNYSDKYH
                     FTCVELDTISANILKHLHPNQTIYNKAFQHHLFDKPYDAFIGNPPFGQKKILDLNDPT
                     LNKTSVHNYFIGNAIKNLKEDGIAAFVVSSYFLDSKNSTIRNFIAEQATFLGAVRLPN
                     NAFKKRANTEVTTDIIFFKKGKDLNIDKSWLESVEYYDDRFDEAEKRGMHPDVFNDFR
                     INEYFKNNPQNILGKMNIKSSQYGYSLECLDDGRDLKIALENFTKTLPKNIYKYQETK
                     IKLSYYRIDRESPEYEKYSKTLSKLKDGNYFEYNNEIYMKIRSDDELVFSKPVLNEHD
                     TRRIKKLIALRDQFNTLIEYEKNESSDLLVENQRKYLNKLYDEFVAKEGYLNRDANKK
                     AFREDVEANKILALEKNYSSGISKSVALKEGIDPIAPSATKADIFFKRTINAQKEIKI
                     STPKEALIASINEYGRIDLKFLETNLNQPLEETLKSLEQDRLIFKDHKNPANYVLAEK
                     YLSGNVKAKHKEVKKLVEDGFNEFVNNLESLEQVLPKDLKAVDISISLGTTWIPIKYY
                     KQFIEETLQITPKDYDLFLMEKTGEWSLKGFGYSLSSYIRSEYATERIGCFDLLEHGL
                     LRKPIRIYDKKLDPSGKEIRELNPKETAIANSKLENLKNEFIEWIYKDYDRRTDLENI
                     YNERFNTNIEPRYNGEHLELPNFNANIKLKKHQKNAIYRAIQENSIIFDHQVGAGKTL
                     VAICSVMEQKRMGLLNKPLIVVPNHLARQWNDEFYHAYTNANILVATNDDLKKDNREK
                     FFSKIATNNFDSIIMTHSQFKLIPAPYEVIKKQYEEDINILEQTLEKKRNDDNVMRYS
                     VKDLEKRIENFKVKLSDLQTTHKKSKAIDFSELGIDALIIDEAHEFKNLLITTSMGDI
                     SGLGNLKGSQKAYDLYSKTQYIHEQNKKLYFLTGTPISNSITELYTLQRYIQPNILKE
                     KGIQAFDSWASTFGEVTNAWELDSSGINYKIVARFNKFKNVPELSTMYKSVADIVTNN
                     DIMKYQKDFVPKLYNDKPINIVAPRSKEIAEFIGIQDENGRWNEGSIVWRMEHQQDDI
                     TRNNLLACTTDARKAGLDFRLINPHCDDYANSKINKLIENVFNEYNAWNDDKGTQLIF
                     CDLSTPKQHSQKVALNGNIATPNLNKEEFVNINETIEQTEEENSKSLDELLAEQAKFD
                     VYTDILKKLVAKGIPQNEIRFIHDAKTDLQKGQLFADMNSGKARILIGSTQKMGAGTN
                     VQKRIVALHHLDCPWRPSDLEQRSGRVIRQGNELFMRDPQNFRVKEFRYATERTYDAR
                     MWQVIESKARSIEQFRKAGADVRTLEDVTSGAADAAEMKAEATGNPLILLQVQLNSDL
                     RQEEMLYSGYKRQIHNNEESLITNLSKIELLKKDIAKMEILNSIIKENNSEHFQGKYY
                     INDDEKDFIVFKNDTSDLNKSRQAELERNFEKIVKTIADDYQKEYKVLEFKGLLISGE
                     RTDLNTLNFYVSTTDGKTIIEPENLIYKRDEKTFFKLESYVNFGGFVKRLNNFYNDLE
                     KFTQLNKNKIENLEKEIVELKSITGDNTPKYKRKDYLEALREDNRIIMDEIEKMSKQK
                     NYKSDFVPKSAKILEDLNKNNNIQKEYDIEI"
     gene            complement(6114..>6626)
                     /locus_tag="SB143_001545"
     CDS             complement(6114..>6626)
                     /locus_tag="SB143_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEF9750063.1"
                     /translation="SWKLKYSNYWSFSSCVEIDHNYKSLGIGTFVINKILEIALSYVP
                     EAEFHDILSKGNDENEESCKNRIRRDKLYKNLGFIFNESNTGFNIDSISNLKIRKDFD
                     YIQEVRIFDMCNQLANLKYLKAGDDKLLKIYKEDCYKEKSKNNILRAIVKLVSFVSIA
                     LAVWIVFLLK"
BASE COUNT         2779 a          884 c         1039 g         1924 t
ORIGIN      
        1 tacaatagca gaagctttaa actctgaaac aagctctcaa aaaacatata gtaaagctga
       61 taaaaaatca gctgggagaa aaactataga tcaaaaacta agaagagaca atttagtagt
      121 ttgcagactt aatgaacaag aaatggaaat tttgaaaaaa ttaatggatt tagatttagt
      181 aagtgaatat ggtacttata taagaaaatt aatcttaaaa gaggcacgag ctttaaatat
      241 taatagttaa aaatgttaaa atatccttgc aaaaaacaaa aattacaagg atataaatga
      301 gtaaaaaaac aaaaagacaa attgaagatg aaaaagatta tggcggtcga agtttatttg
      361 atctaatcga attagaattt tcacaaggag aagaaaatga gcaacaaaat agagaattat
      421 ccgaacatag agaagttaca gataatattg aacgaactag catttcatca aatacaccaa
      481 gcgtggatag acaagaaaat tccacaatac agtttgataa tactagagag atgggcagag
      541 ttttatccga acacaatcaa gaatctagga atgtcagatc tcatgacact agcattacca
      601 caagctcaaa tggaattagc aattttggag agcaaagaag cgaacaagaa gagagatcag
      661 gggctaacag atatggagat actagcggaa gagcagataa atctcaatca atacatagcg
      721 atagaacccc aaatttattc tcctttattt caagaaatga tgatgaaaga caaggaacag
      781 gtacaagaag aaacaatcaa caatcagtat tggaaactgc aacaagaaat gatggatatg
      841 aaagaagaag cctcaaatct ggacaaaaat tagattttgt aagcgatgat gaaatctatc
      901 taggttcttt aaaagataga tttcaaaaaa accttcaagc cattaaactt ttaaaaacta
      961 ttgaacaaga aaatcgctac gctaccaaac aagaacaaga aattctaaat aaattttcag
     1021 gatggggcgg tattcctcaa gcttttgatc atcagaataa agaatgggaa aaagaattta
     1081 aagaacttat tagcacactt gattatgtag aatatgaaaa ggcaaaaact tcaactttag
     1141 atgcttttta cactccaaaa attattatcg atacaattta tcaagggctt aatcagttag
     1201 gatttaataa tgatgatcac accaaagaaa tatttgagcc aagtgcaggc ataggctctt
     1261 ttttgtctta tgcaaaaaat tatagcgata aatatcattt tacttgcgta gagcttgata
     1321 ctataagtgc aaatatatta aagcatttgc acccaaatca aacaatttat aataaagcat
     1381 ttcagcacca tttatttgat aagccatacg atgcttttat aggtaatccg ccttttggtc
     1441 aaaaaaagat cttggattta aatgatccga cacttaataa aacgagtgtg cataattatt
     1501 ttattggtaa tgcaattaaa aatttaaaag aagatggaat tgctgctttt gtagtatcaa
     1561 gttatttttt agattctaaa aatagcacaa taagaaattt tatagccgaa caagcaacat
     1621 ttttaggtgc tgtaagattg ccaaataatg cttttaaaaa acgagctaat acagaagtta
     1681 ctaccgatat tatctttttt aaaaaaggta aagatttaaa tatagataaa tcttggctag
     1741 aaagcgtaga atactatgac gatcgttttg atgaagctga aaaaagaggt atgcaccctg
     1801 atgtttttaa tgactttaga ataaatgagt attttaaaaa taatccacaa aatatcttag
     1861 gaaaaatgaa tattaaaagc tctcaatatg gttatagttt agaatgctta gatgatggaa
     1921 gagatttaaa aatcgcttta gaaaatttta caaaaacctt acctaaaaac atttataaat
     1981 atcaagaaac aaaaatcaag ctatcttatt acaggattga tagagaatcg cctgaatacg
     2041 aaaaatatag caaaactcta agtaagttaa aagatggaaa ttattttgaa tacaataatg
     2101 aaatctacat gaaaatcaga agcgatgatg agttagtctt ttcaaaacct gttttaaatg
     2161 aacacgatac aagaaggatt aaaaaactca ttgctcttag agatcaattt aacactctta
     2221 ttgaatatga aaaaaatgaa tctagcgatc ttttagtaga aaatcaaaga aaatatctaa
     2281 acaagcttta tgatgaattt gtagccaaag aaggatattt aaatagagat gcaaataaaa
     2341 aagcctttag agaagatgta gaagcaaaca aaattttagc actagaaaaa aattatagca
     2401 gtggtatttc aaaaagtgta gctttaaaag aaggtataga tcctattgca ccaagtgcga
     2461 caaaagcaga tatttttttc aaaagaacta taaatgcaca aaaagaaatt aaaatctcga
     2521 ctccaaaaga agcattaatt gctagtatca atgaatatgg gagaattgat ttaaaatttt
     2581 tagaaacgaa tttaaatcag cctttagaag aaacccttaa atctttagag caagatagat
     2641 taatctttaa agatcacaaa aatcctgcaa attatgtttt ggctgaaaaa tatctttctg
     2701 gcaatgttaa agcaaagcat aaagaagtaa aaaaattagt agaagatggc tttaatgaat
     2761 ttgttaataa tttagaaagc ttagaacaag tcttgcctaa agatttaaaa gcggttgata
     2821 tttcaataag cttagggaca acatggatac ctataaaata ttacaaacaa tttatagaag
     2881 aaaccttaca aattactcct aaagattatg atttattttt aatggaaaaa acaggcgaat
     2941 ggagtcttaa aggttttggc tattctttaa gttcttatat tcgttcagaa tatgccacag
     3001 aaagaatagg ttgctttgat ttgttggagc atggattatt aagaaagcct attcgcattt
     3061 atgataaaaa actagatcca tcaggaaaag aaatcagaga attaaatcct aaagaaactg
     3121 caatcgctaa ttctaaatta gaaaatttaa aaaatgaatt tatagaatgg atttataaag
     3181 actatgatag acgcacagat ttggaaaata tctataatga aaggtttaat acaaatatag
     3241 aaccacgata caatggagag catttagaac ttccaaattt caatgccaat atcaaactca
     3301 aaaaacacca aaaaaatgct atatataggg ctattcaaga aaatagtatt atttttgatc
     3361 atcaagtagg tgctggaaaa actttagtgg caatttgctc tgtgatggag caaaaaagaa
     3421 tggggctttt aaataaaccc ttaattgtag tccctaatca tttagcaaga caatggaatg
     3481 atgagtttta tcacgcctat acaaatgcaa acattttagt tgctacaaat gatgatttaa
     3541 aaaaagataa tagagaaaag tttttttcca aaattgcaac aaataatttt gattccatca
     3601 ttatgacaca ctcgcaattt aaattaatcc ccgcacctta tgaagttatc aaaaaacaat
     3661 atgaagaaga tattaatatc ttagaacaaa cattagaaaa aaaacgaaac gatgataatg
     3721 ttatgcgata ttctgtaaaa gacttagaaa aacgcattga aaattttaag gtgaaattga
     3781 gtgatttgca aactacacat aaaaaatcta aagcgataga tttttcagaa ttaggaattg
     3841 atgcattaat tattgatgaa gcacatgagt ttaaaaattt actcattaca acttcaatgg
     3901 gtgatataag tggtcttggc aatttaaaag gctcacaaaa agcctatgat ctttattcta
     3961 aaacacaata tattcacgag caaaataaaa aactctattt tttaacagga acgcctataa
     4021 gcaattcaat tacagagctt tatactttgc aaagatacat acaaccaaat atcttaaaag
     4081 aaaaagggat acaagctttt gattcttggg cttctacttt tggagaagtt acaaacgctt
     4141 gggagcttga tagttctgga ataaattata aaatcgttgc aagatttaac aaattcaaaa
     4201 atgttcctga actttctacc atgtataaaa gtgtggctga tattgtaaca aataatgata
     4261 ttatgaaata tcaaaaagat ttcgtgccaa agctttacaa tgacaaacct attaatatcg
     4321 ttgctcctag aagtaaagaa atagcagaat ttataggcat tcaagatgaa aatggaagat
     4381 ggaatgaagg ctctattgtg tggagaatgg agcatcaaca agatgatatt actagaaata
     4441 acttacttgc ttgtaccaca gatgctagaa aagctggact tgattttaga cttattaatc
     4501 cacattgtga tgattatgca aattctaaaa ttaataagct tattgaaaat gtttttaatg
     4561 agtataatgc ttggaatgat gataaaggca cacaattaat attttgtgat ttatccactc
     4621 caaaacaaca ctcacaaaaa gttgctctaa atggcaatat tgctacacca aatttaaata
     4681 aagaagaatt tgtcaatatt aatgaaacaa tagaacaaac agaagaagag aatagcaaaa
     4741 gccttgatga actcttagca gaacaagcaa aatttgatgt atatactgat atcttaaaaa
     4801 aacttgttgc aaaaggtatt ccacaaaatg aaattcgttt cattcacgat gcaaaaacag
     4861 acttacaaaa aggacagctt tttgcagata tgaactcagg aaaagctaga attttaattg
     4921 gatcaacgca aaaaatgggt gctggaacaa atgtgcaaaa aagaattgta gccttacacc
     4981 atttagattg cccttggcgt ccgagcgatt tagaacaaag aagcggtagg gttataagac
     5041 aaggcaatga actctttatg agagatccac aaaactttag agtaaaagag tttagatatg
     5101 caactgaaag aacctatgat gctagaatgt ggcaagtcat tgaaagcaaa gcaagatcca
     5161 tagaacaatt tagaaaagct ggtgctgatg taagaacctt agaagatgtt acaagtggtg
     5221 cagctgatgc tgcagaaatg aaagcagaag caacaggcaa tccactcatt ttactacagg
     5281 tgcaattaaa tagtgatcta agacaagaag aaatgcttta tagtggttat aaaagacaaa
     5341 tacacaataa tgaagaaagt cttataacta atctttcaaa gattgaacta ctaaaaaaag
     5401 atatagctaa aatggaaatt ttaaattcaa tcatcaaaga aaacaatagc gagcattttc
     5461 aaggaaagta ttacattaat gatgatgaaa aagatttcat tgtctttaaa aatgatacga
     5521 gtgatctaaa caaaagcaga caagcagaac ttgaaagaaa ttttgaaaag attgttaaaa
     5581 caatagctga tgactatcaa aaagaatata aggttttaga gtttaaagga ctgcttataa
     5641 gcggagaaag aacagattta aacactctta atttttatgt gagtactact gatggtaaaa
     5701 caataattga gcctgaaaat ttgatttata aaagagatga aaaaaccttt tttaaattgg
     5761 aaagttatgt aaattttggt ggttttgtaa agagattaaa caatttttat aatgacttag
     5821 aaaaatttac tcaactcaat aaaaataaga tagaaaatct tgaaaaagaa attgtggagc
     5881 taaaaagcat tacaggagat aacactccaa aatacaaaag aaaggattat ttagaggcat
     5941 taagagaaga caatcgcatt atcatggatg aaatagaaaa aatgagtaag caaaaaaact
     6001 acaaaagtga ttttgtgcca aaatctgcaa agattttaga agatttaaat aaaaacaata
     6061 atattcaaaa agaatatgat attgaaatat aattagtaaa aggcaattgc cttttacttt
     6121 aataaaaaaa caatccaaac agccaatgct atcgaaacaa aagacacaag cttaactatt
     6181 gcacgaagga tattattctt gcttttttct ttatagcaat cttctttata aatttttaat
     6241 aacttatcat cacctgcttt tagatatttt aaatttgcta attgattaca catatcaaaa
     6301 atacgaactt cttgaatata atcaaaatct tttcttattt ttaaattgct aatgctatct
     6361 atattaaaac ctgtattgct ttcattaaat ataaaaccta aatttttata caacttatcc
     6421 cttcttatac gattcttaca actctcttcg ttttcatcat ttcctttact caatatatca
     6481 tgaaattctg cctctggaac ataacttaaa gcgatttcta atattttatt tatcacaaat
     6541 gttcctatac ctagagattt ataattatga tcaatctcta cacaagaact aaaactccaa
     6601 taattactat atttcaactt ccaaga
//
LOCUS       DARAII010000100         6436 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.100, whole genome shotgun sequence.
ACCESSION   DARAII010000100 DARAII010000000
VERSION     DARAII010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6436)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6436)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6436
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.100"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            3..695
                     /locus_tag="SB143_001546"
     CDS             3..695
                     /locus_tag="SB143_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEF9750064.1"
                     /translation="MIYKKIKALYFWFFFIISVAFVVLCFCFIKSQDTLWKLRKSWAR
                     FQKNILFCKYEVIGEFDLKANMILMNHQSTLDIIALEDLYPKNLCWIAKKELGEIPLF
                     KIAIKKPKLLCIDRKNPRDLVRVLKEAKQRLSEDRVLAIFPEGTRSRNEKLLKFQSGA
                     KILSEKLDLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTSDKKWLENTRKKM
                     QELLDQERAKLC"
     gene            689..1057
                     /gene="crcB"
                     /locus_tag="SB143_001547"
     CDS             689..1057
                     /gene="crcB"
                     /locus_tag="SB143_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEF9750065.1"
                     /translation="MLNTILVVGLGGFIGAVLRMLSINLINKILPHSISFGTLFVNVL
                     GSFMMGLLFSYAHHKGLSPALKSFISTGFLGAFTTFSTFSYENLLLLQSGNYFNFSLN
                     ILLNIILCLIAVWLGFIIFK"
     gene            1130..2959
                     /gene="htpG"
                     /locus_tag="SB143_001548"
     CDS             1130..2959
                     /gene="htpG"
                     /locus_tag="SB143_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEF9750066.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELVSNSSDALDKLNFLS
                     VSDDKYKSLKFEPRIDIKIDKDKKTLTISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWISDANGYEIEDATK
                     EEQGTSITLYLKDDEFANSYKIESIIEKYSNHIQFPIFMEKEEFIPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKTEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLYRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILSELEKLKNKDKEKYLSFFKNFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGESLRSLEEYKNDIQGEQKEIFYITGNNESLLRNSPLLEEYKQKNIEV
                     LLMDDEIDSLVAPMLGEYEGLKFIAINQVEDKNELSDEEKNEFAPLVAKFKELLKDQV
                     EDVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKN
                     NETFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIITKAFS"
     gene            2956..3276
                     /locus_tag="SB143_001549"
     CDS             2956..3276
                     /locus_tag="SB143_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEF9750067.1"
                     /translation="MITNLPASVWMKQDLSEYQIFDVRTPAEWEEGVLPHAECVALYD
                     NHGLLNANFLEEFQARRNENKKLAFICRGGHRSMMAANFIKNELGLESVNLDGGMLAL
                     KGLI"
     gene            3273..3707
                     /locus_tag="SB143_001550"
     CDS             3273..3707
                     /locus_tag="SB143_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750068.1"
                     /translation="MIGLYLLIAALSFLLLYFALKKLTLNIDEKALLEPIKSDIYPKF
                     CDIIDERIREFKDGVQNNSFTLKDQDKKDELLEKLGDLSRELTFIQTMNLSNKSDSVW
                     QSELFDFLKELEKLLLEYLENGEEEAENLRENLMNEFEKLRG"
     gene            3682..5490
                     /locus_tag="SB143_001551"
     CDS             3682..5490
                     /locus_tag="SB143_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HEF9750069.1"
                     /translation="MNLKSLEAKVQERKNFLKYLKMTFWGIFTLVLIFALIRFSELAN
                     LLAGVAILLIGMTNLSLGFKSFSGGLLEKILTHSTNTKLKSILFGAISTLIMQSSTLV
                     SIISLSFLSAGLISLVAGVGIIFGANLGNTASSWLIVWLTRVNISILAIPLLVIGVLF
                     FFQKDNMIKSFGNIFIGIGFFFLGVDYIKNGFNEFQDAIDLSYFDFTGFKGVLIFVGL
                     GALLTGIIQSSTATIAIIVAALLTGQISFENSLAATLGTSVGGVVTAVLASLSTNVEG
                     KKLAFANCIFNFTIAIIIILIFPYFIDFLNGMAKILNIENLALKMALFHTLFNLLGIF
                     IFVLFIPQLVNFLNKIVKAPKDKNKDRPLYLEPSLLKFSDTAIEALRKESEHLYDNAY
                     AIIAHAIGLSRKDIQSNKSFEEILQNKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKA
                     QIHIDDELKNHRIFTFKIAAKNLTEATKNLKLVQENIKKYSNCGNKDLALEYNKIRSN
                     LGELLRSIQELRSVDDEKVYLIIKNFQKGKEILKEIDGLTLNNVEHLILVRKITTAEG
                     ISIINDTSFIAKIAKDLIDAVEIIFAREKVLWDDIN"
     gene            complement(5483..>6436)
                     /locus_tag="SB143_001552"
     CDS             complement(5483..>6436)
                     /locus_tag="SB143_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEF9750070.1"
                     /translation="GQILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIF
                     TTALRLGKLKTDEVINTYGGAYKLGRFTIRDDHKMDQMTMEEVIRYSSNIGMIQIAKR
                     LSNLEIIAGLKIFKFGEKSGIDLPYEQKGEIPNSKRLRDIEKSVLSYGYGLKTTFIQL
                     LAAYNVFNNNGVYITPHLAEKFYQDGRFVSLEEDIKKEVILTPQAAQTMQKILIDVIE
                     KGTGKKAITQGIIVGGKTGTARIAERQGYTSNRYNASFFGFANDTKHNYTIGVLVRNP
                     TKPYSYYAAQSALPMFKDVVDILINEDFLTPIITENNQTLN"
BASE COUNT         2214 a          827 c         1152 g         2243 t
ORIGIN      
        1 tagtgattta caaaaaaatt aaagctttat atttttggtt cttttttatt ataagcgtag
       61 cttttgttgt gctatgtttt tgttttatca aatctcaaga tacgctttgg aaacttcgaa
      121 aatcttgggc tagatttcaa aaaaatattc ttttttgcaa atatgaagtc ataggggaat
      181 ttgatcttaa agcaaatatg attttaatga atcatcaaag taccttagat atcatagctt
      241 tagaggattt gtatcctaaa aatttatgtt ggattgccaa aaaagaatta ggcgaaattc
      301 ctctttttaa aattgccatt aaaaaaccta aacttctttg catagataga aaaaatccac
      361 gcgatttggt gcgtgtttta aaagaagcta aacaaaggct tagtgaagat agagttttgg
      421 cgatttttcc tgaaggaacg cgttctagga atgaaaaatt gcttaaattt caaagtggtg
      481 ctaaaatttt aagtgaaaag cttgatttaa aagtgcagcc tattttgatt gttgattctg
      541 cgaaaatttt agacactaaa agttttagtg ctagttctgg agtattgaaa atcatttgca
      601 tggatttagt ggatacgagt gataaaaaat ggcttgaaaa tactagaaaa aaaatgcaag
      661 aattactaga tcaagaaaga gctaagcttt gctaaatacc attttagttg ttggtcttgg
      721 gggttttata ggggcggttt taagaatgct ttctatcaat ttgataaata aaattttacc
      781 ccattctata agctttggta ctctttttgt taatgtctta ggatctttta tgatggggct
      841 tttgttttct tatgcacatc ataagggttt atctcctgcg ctcaaaagct ttataagtac
      901 aggattttta ggagctttta caactttttc tacattttct tatgaaaatt tactgctttt
      961 acaaagtgga aattatttta atttttcttt aaatatttta ttaaatataa tcctttgcct
     1021 gatagcagtt tggcttggtt ttataatttt taagtaagct cttgaaattt accttagaat
     1081 ttgtattttt tgctaaaata tctgtttcaa aatttataaa ggagaaaaaa tgcagtttca
     1141 aactgaagta aatcaacttt tacaattgat gattcattcc ttatactcaa acaaggaaat
     1201 atttttaaga gaacttgtat caaattcaag tgatgctttg gataaactta attttttaag
     1261 cgtgagtgat gataaatata aaagtttaaa atttgaacct agaatagata ttaaaatcga
     1321 taaagataag aaaaccctta ctattagcga taatggtata ggtatggata aagatgatct
     1381 tattaacaat cttggaacca tagcaaaaag tggtacaaaa agttttttag agaatttaag
     1441 tggtgatgca aaaaaagatt ctcaacttat aggacaattt ggtgtaggtt tttattctgc
     1501 atttatggtg gctagtaaaa tcgaagtttt aagcaaaaaa gctttagatg ataaagctta
     1561 tctttggatt tctgatgcaa atggctatga gattgaagat gcgactaaag aagagcaagg
     1621 gacaagtatt actttatatt taaaagatga tgaatttgca aattcttata aaatcgaaag
     1681 tattatagaa aaatattcaa atcatatcca atttccaatt tttatggaaa aagaggaatt
     1741 tatccctgct aaagagggcg aggaagaagg aaaaaccgag cttaaaattt ctcaaattaa
     1801 taaagctaat gccttgtgga gaatgcaaaa atcaagcctt aagacagagg attatgaaag
     1861 attttatgag caaaattttc acgattctaa caagcctttg ctttatcttc atactaagag
     1921 tgagggaaaa ttagaataca attctttatt ttttattccg caaaatgcac cttttgatct
     1981 ttatcgtgtg gattatcaaa gcggattaaa actttatgta aaacgcgtat ttatcagcga
     2041 tgatgataag gagcttttac cgacttattt gcgttttgtg cgcgggatta ttgatgtaga
     2101 ggatttacca cttaatgtaa gccgtgaaat tttacaagaa aatcaaattt taaaaggcgt
     2161 aaaagaagcc agcgttaaaa aaatacttag cgagcttgaa aaacttaaaa ataaagataa
     2221 agaaaaatat ttaagctttt ttaagaattt tggcaaagtg ttaaaagagg gactttatgg
     2281 ttttggtggc gaaaaagaca gtcttttaaa actcatgctt tataaaagca ctaagggtga
     2341 aagtttgcgc tctttagaag aatataaaaa tgatatacaa ggcgagcaaa aagaaatttt
     2401 ctatatcact ggaaacaatg aaagcttgct tagaaattca cctttacttg aagaatataa
     2461 gcaaaaaaat atagaagtat tacttatgga tgatgagatt gattctttgg ttgctcctat
     2521 gcttggagaa tatgaaggct tgaaatttat agccattaat caagttgaag ataaaaatga
     2581 attaagcgat gaggaaaaaa atgaatttgc tccattggtg gctaaattta aagagctttt
     2641 aaaggatcaa gttgaagatg tgagacttac aagtcgttta aaagatagtc caagttgtat
     2701 tgtttatgat aaaaataagc ctgattttgc aatgcagcag cttttaaaac aaatgggaca
     2761 agaacaaaac tttaaaccta ttttagaaat caatccaaaa cacgccattt ttacaggtct
     2821 taaaaataat gaaactttta gtgctgatat agcaacctta gttttaaata tggcaaaact
     2881 tagcgaaggt atgggtgtgg ataatccggc tgaatttaat gcaagcctta caaaaatcat
     2941 cactaaggct ttctcatgat tacaaatctc ccagcaagtg tttggatgaa gcaggattta
     3001 agcgaatatc aaatttttga tgttcgcact ccagctgaat gggaggaggg tgttttacct
     3061 catgctgaat gtgtagcttt gtatgataat catgggcttt taaatgctaa ttttttagaa
     3121 gaatttcaag cgagaagaaa tgaaaataaa aaacttgctt ttatttgtcg tggaggtcat
     3181 agaagtatga tggctgcaaa ttttattaaa aatgaactcg gtttagaaag tgtaaattta
     3241 gatggtggga tgttggcatt aaaaggcttg atatgatagg actttatttg ttgatagcag
     3301 cgttatcttt tttactcctt tattttgcac ttaaaaaact tactttaaat atagatgaaa
     3361 aggccttgct tgagcctata aaatcagata tttatcccaa attttgtgat attatcgatg
     3421 aaagaattag agaatttaag gatggggttc aaaataatag ttttacctta aaagatcaag
     3481 ataaaaaaga tgaattattg gaaaaattag gggatttaag cagagagctt accttcatac
     3541 aaacaatgaa tttaagcaat aaaagcgata gtgtatggca aagtgagctt tttgattttt
     3601 taaaagagct tgaaaaatta ttgcttgaat atttggaaaa tggcgaagaa gaggctgaaa
     3661 atttaagaga aaatttgatg aatgaatttg aaaagcttag aggctaaggt gcaagaacgc
     3721 aaaaactttt taaaatatct caagatgact ttttggggta tttttacttt ggttttaatc
     3781 tttgctttaa ttcgatttag tgaattggct aatttattgg ctggagttgc aattttactt
     3841 ataggaatga ccaatttaag cctaggattt aaatctttta gtggcggctt gcttgaaaaa
     3901 attcttactc actcgacaaa tacaaaactt aaaagcatac tttttggtgc tattagcact
     3961 cttatcatgc aatcttcaac tttagtttcg attatctctc tttctttttt gagcgcagga
     4021 ctaatatctt tagttgctgg tgtgggtatt atttttggtg caaatttggg aaatactgca
     4081 agttcatggt tgattgtttg gcttacaaga gttaatattt ctatcttggc tatacctttg
     4141 ctcgtaattg gagttttgtt tttctttcaa aaagataata tgattaaaag ttttggaaat
     4201 atttttatag gtataggttt tttcttctta ggagtggatt atataaaaaa tggttttaat
     4261 gaatttcaag atgctataga tttgtcttat tttgatttta caggttttaa gggagtgttg
     4321 atttttgtag gtcttggggc tttgcttaca ggtattattc aatcaagcac agcaacaata
     4381 gccattatag tcgcagcact attgacaggg caaatcagtt ttgaaaattc tttagcagcg
     4441 actttgggta cgagtgtagg aggtgtggta acagctgtgc tagcttcttt aagtactaat
     4501 gttgagggca aaaagcttgc ttttgcaaat tgtattttta attttactat tgcaattata
     4561 atcatactta tttttcctta ttttattgat tttttaaatg ggatggcaaa aattttaaat
     4621 atagaaaatt tagctttaaa aatggcctta tttcatactt tgtttaatct tttaggaata
     4681 tttatctttg tattgtttat cccacaattg gtaaattttt taaacaaaat cgttaaagca
     4741 cctaaagata aaaataaaga tcgaccctta tatcttgaac ctagtttatt gaaatttagt
     4801 gatacagcta tcgaagcttt gcgaaaagaa agcgaacatc tttatgataa tgcgtatgcg
     4861 attatcgctc atgctatagg gttgagtcgt aaagatatac aaagcaataa aagctttgaa
     4921 gaaattttgc aaaataaaaa atggtttagt aaaaatgtgg atttggatta tttgtatcaa
     4981 actagaatca aagtgctttt tgaagctatc attgactttt caaccaaagc gcaaattcac
     5041 atagatgatg aacttaaaaa tcacagaatt tttactttta aaatcgctgc taaaaatctt
     5101 acagaggcaa ctaaaaattt aaaattagtt caagaaaata tcaaaaaata ctctaattgc
     5161 ggtaataaag atttggcctt agaatacaat aaaataagat ctaatttagg agaattgcta
     5221 agaagtattc aagagcttag aagtgtggac gatgaaaaag tgtatttgat tattaaaaat
     5281 tttcaaaaag gtaaggaaat tctaaaagaa attgatggtt taactcttaa taatgtcgaa
     5341 catcttattt tagttagaaa aatcactacc gcagagggta tatctataat taatgataca
     5401 agttttattg ctaagattgc taaagatctt atagatgccg ttgaaatcat tttcgcaaga
     5461 gaaaaggtgc tttgggatga tattaattaa gagtttgatt attttctgtg atgatagggg
     5521 ttagaaaatc ttcattgatt aaaatatcta caacatcttt aaacataggt aaagcacttt
     5581 gagcagcata gtaactataa ggcttggtag ggtttcttac taaaacccct atggtatagt
     5641 tatgttttgt atcgttggca aaaccgaaaa aagaagcatt atagcgattg gaggtatagc
     5701 cttgtctttc tgcaatacgc gcagttcctg ttttaccccc tacgattata ccttgagtga
     5761 tagctttttt tcctgtacct ttttctataa catcaataag aattttttgc atggtttgcg
     5821 ctgcttgcgg ggttaaaata acttcttttt tgatatcctc ttcaagactt acaaagcgtc
     5881 catcttgata gaatttttca gccaaatgcg gagtgatgta aactccattg ttattaaaaa
     5941 cattataagc agcaagtagt tgtataaagg ttgtttttaa gccatatcca tagcttaata
     6001 ccgacttttc tatatctctt aagcgcttgg aattagggat ttctcctttt tgctcgtaag
     6061 gcaagtcaat tccgcttttt tcgccaaatt taaaaatttt aagtccagca atgatttcaa
     6121 gattactcaa tcttttcgca atttgtatca tacctatatt agaagaatat ctaatcacct
     6181 cttccatagt catttgatcc attttatgat catctctaat agtgaaacgc cccagtttat
     6241 aagctccacc ataggtgtta attacttcat ctgtcttgag tttgccaagt cttagagcag
     6301 ttgtaaaaat aaaaggcttg ataaccgatc ctgcttcata tccatactct atagcgcttg
     6361 catttaaaac agataaatct ttaccgcgat tttggggatc ataacgccta gaacttgcca
     6421 gagctagaat ttgacc
//
LOCUS       DARAII010000101         6373 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.101, whole genome shotgun sequence.
ACCESSION   DARAII010000101 DARAII010000000
VERSION     DARAII010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6373
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.101"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..267
                     /locus_tag="SB143_001553"
     CDS             <1..267
                     /locus_tag="SB143_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase B"
                     /protein_id="HEF9750071.1"
                     /translation="LCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSAELAAVC
                     AILGKIPSKEEYLQIVSDKLSDAHKANIYKYLNFNEIDNFKLDN"
     gene            326..1567
                     /locus_tag="SB143_001554"
     CDS             326..1567
                     /locus_tag="SB143_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEF9750072.1"
                     /translation="MRLLFILFCCFLGLKAENLITCDYIKNNKAQVFQDSPKQDYLDI
                     ASTCDFSLKNQAFTKRLYQLANEIRGGNAACSGIEYFPKLQEFDFLLLKISIDPIEYQ
                     KGLDAPENLEKKYTLLRSYFRYWAYQSIGNFRLYQEFWQEYNNAIEPLEQYFENNFKF
                     DKGSNIYYTTNALNEFLNWAVGETKIYKDISPLAKVLSNKKHSITYIQDFIYTNNLNR
                     DELTIGLQAALLNQRNKDILNLLIRLGARIDEGYENALFYALENYDNTKFLLELGLNV
                     NSANTFGKTPLFYAIEFKRKDIVSLLLVYGADVNKKYINDNEKLALSANIGGNTPYFI
                     TFCALEHTSKNVLMHAAAYGDVEILKMLVAKGADINEIDDLGFNALDFALAANQKDNA
                     NYLQSLGLKPNENLIYGGSLE"
     gene            1564..2313
                     /locus_tag="SB143_001555"
     CDS             1564..2313
                     /locus_tag="SB143_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEF9750073.1"
                     /translation="MKTAFITGASSGFGHACVEAFIQEGYKVIALARRKDRLDELKAK
                     YKDQIHILCLDVRKQEEIFKAVENLPNDFKEIDVLFNNAGLALGIDEFDKLSIEDIDT
                     MVDTNIKGLLYVAKAIIPILRKQKSAYIFNLGSVAARNPYFGGNVYCGTKAFVGQFSR
                     ALRNDLRGENIKVTNIAPGLCKTEFSEVRFKGDKAKADAVYEGTQYISAQDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIEQNQ"
     gene            2310..4040
                     /locus_tag="SB143_001556"
     CDS             2310..4040
                     /locus_tag="SB143_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEF9750074.1"
                     /translation="MRFLVFFLLPLLAFANTHQATANANLFGVFTLIPPLVAITLAFI
                     TKDVILSLFAGVLSGTFLLSLASNIFQADSLSFIHFYNTAIDSFSKIISYILESTSDP
                     VNAGIILQILCIGGLVALITKMGGAKAVAIKFAKRAKSAVSAQVNTWFLGLLIFFDDY
                     ANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKNAYED
                     IGISNISAFGVFVETIPYRFYNIFMLFFVLMTALMGREFGPMLKAEIRARTTGQIVPL
                     SKSSTLDTAELEDQFLAPKEDIKIRALDATIPILTLIVLAILGFYFNGLSTLEGEELL
                     KANANPLSFETLRLAFGSANSSVVLFQAALFAAIVAIFIGVYRKIFNFKEAVETWIYG
                     WKTMIFTIVLLLFAWSLSSIVKELGTPEFISSLLADKLPEFILPATIFAFASLISFAI
                     GTSYGTMGILMPLAVPLAYKVAQINAMDMDAMHHYMVINISCVLTGAIFGNHCSPISD
                     NVILSSMSAKCDHMEHVRTQIPYALFICVISLFAGYIPVSLGLSVWLVLPLNLILIAF
                     LLRIIGKKVS"
     gene            4037..5125
                     /gene="trmA"
                     /locus_tag="SB143_001557"
     CDS             4037..5125
                     /gene="trmA"
                     /locus_tag="SB143_001557"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEF9750075.1"
                     /translation="MSLQEFGNFLKLEEKASFIKEFFKDFYQGNFELFSSKDKHYRTR
                     AELSFYHDKDEIYYAMFENKKKIIIESLEFADEKITAFMPKLLKQIRNNTNLKEKLFG
                     VEFLATKNELSTTLLYHKNIELIYNDLNNLSLELDANLIARSKGKKLVFKKENLRQEL
                     DIQGRKIFYEFNNDCFIQPNTSINEKMITWVCENLKTQERKDLLELYCGYGNFTLALA
                     IFFNNVLATEISKSNINFALLNCKINNISNIHFTRLSSEELSQALKKEREFFRLKDID
                     LDNFNFSHILVDPPRAGLDKSVIDLIKNYENIIYISCNPISLKENLKELALTHKVEKF
                     ALFDQFVNTPHLECGILLKSLHSKQSSI"
     gene            complement(5137..5547)
                     /locus_tag="SB143_001558"
     CDS             complement(5137..5547)
                     /locus_tag="SB143_001558"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEF9750076.1"
                     /translation="MVQAYPYILIIHLSCAIFFIGYLFVDIFILNTIKRKNPNFDKNL
                     FSSVGVKIMPFIVLLLFLSGGAMISFHLNPLNLIFLIKLILAFSILSLVVFSLFFHFV
                     LKRKNPLTRFIHPFVFMLCIFIVVLAKLMNYYFL"
     gene            5711..6130
                     /locus_tag="SB143_001559"
     CDS             5711..6130
                     /locus_tag="SB143_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEF9750077.1"
                     /translation="MDENLIIDKILNNTKTIAIVGLSPDESKPSFMIGQFLQENHYKI
                     YPIYPKCDEILGERVYRSLDDIDEKIDLVLMFRKGEFASSLLPSIIRKGIQNFWLQLG
                     ICNNEVAKECENLKINFIQDKCIMRELPLYQDRISKC"
     gene            6124..>6373
                     /locus_tag="SB143_001560"
     CDS             6124..>6373
                     /locus_tag="SB143_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal-phosphate dependent enzyme"
                     /protein_id="HEF9750078.1"
                     /translation="MLELNKIYQAKQKIADFVSKTPFIHSSFLSELCKSEVYLKNENL
                     QITGAYKIRGAYNKIANLDPEAKKAGVIAASAGNHAQGV"
BASE COUNT         2263 a          928 c         1021 g         2161 t
ORIGIN      
        1 ctatgtatgg gaaatcaagc aagagtaaat gatggtgctg ttgtcttctc aacctctaca
       61 agaaactttg acaatcgtat gggtatgggt gctaaagtat atctaggaag tgctgaactt
      121 gcagcagttt gtgcgatttt aggtaaaatc ccaagcaaag aagaatattt gcaaatcgta
      181 agcgataaat taagcgatgc gcacaaagca aatatttata aatatcttaa ttttaatgaa
      241 attgataatt ttaaactaga taattaatcc aaatttaaag cagatttggg ttaaaattat
      301 agattaaaat tttcaaagga taaaattgag attattattt attttatttt gttgtttttt
      361 aggtttaaag gccgaaaatt taattacttg tgattatata aaaaataaca aagcccaagt
      421 ttttcaagat agtccaaagc aagactatct tgatattgct tctacttgtg atttttcttt
      481 aaaaaatcaa gcttttacca aaagacttta tcaactcgcc aatgaaattc gcggtggaaa
      541 tgctgcttgt agtggtattg aatattttcc aaaactacaa gaatttgact ttttgctttt
      601 aaaaatttct attgatccta tagaatatca aaaaggtcta gatgctcctg aaaatttaga
      661 aaaaaaatac actcttttaa gatcttattt tagatattgg gcttatcaaa gtataggaaa
      721 ttttagactt tatcaagaat tttggcaaga atacaataat gccatagaac ccttagaaca
      781 atattttgaa aataatttca aattcgacaa gggtagcaat atttactata ccaccaatgc
      841 tttaaatgaa tttttaaatt gggctgtagg agaaactaaa atttacaaag atataagtcc
      901 tttagcaaaa gttttatcca ataaaaaaca ttcaataact tatatccaag attttattta
      961 taccaataat ctcaaccgag atgaacttac catagggctt caagcagcct tgttaaacca
     1021 acgcaacaaa gatattttaa atcttttgat ccgtttgggt gctagaatcg atgagggtta
     1081 tgaaaatgct ttgttttatg ctttagaaaa ctacgataat accaaatttt tattagaact
     1141 aggtttaaat gtcaatagtg ccaatacttt tggcaagaca cctttatttt acgctataga
     1201 atttaagcgc aaagatattg tttcattgct tttagtatat ggtgctgatg ttaataaaaa
     1261 atacattaac gataatgaaa aattagccct aagcgcaaat ataggcggaa acactcctta
     1321 ttttatcacc ttttgtgctt tggagcacac ttctaaaaat gttcttatgc atgcggccgc
     1381 ttatggagat gtagaaattt taaaaatgct tgttgcaaaa ggtgctgata ttaacgaaat
     1441 agatgattta ggttttaatg ctttagattt tgccctagca gccaatcaaa aagataatgc
     1501 taattatctg caaagtctgg gtttaaaacc caatgaaaat ttaatttacg gagggagttt
     1561 agaatgaaaa ctgcatttat cacaggagca agctctggtt ttgggcatgc ttgcgttgaa
     1621 gcttttatac aagaaggata caaagtcatt gctctagcaa gaagaaagga tcgtttagat
     1681 gaattaaaag ccaaatacaa agatcaaatt cacatacttt gtcttgatgt aagaaaacaa
     1741 gaagagatct ttaaagctgt tgaaaaccta cctaacgatt ttaaagaaat agatgtactt
     1801 tttaataatg ctggtttagc tcttggcata gatgaatttg ataaattaag tatagaagat
     1861 atagacacta tggttgatac taatatcaaa ggtcttttat atgtagcaaa agcgatcatt
     1921 cctatacttc gcaaacaaaa aagtgcttat atcttcaatc ttggctctgt agcagctaga
     1981 aatccttatt ttggtggcaa tgtatattgt ggaactaaag catttgtagg acaattttct
     2041 agggccttaa gaaatgattt aagaggagaa aatatcaagg ttacaaacat agctccagga
     2101 ctttgcaaaa ctgaatttag tgaagttcgc tttaaaggag ataaggcaaa agccgatgca
     2161 gtctatgaag ggacgcaata cataagtgca caagatatag caaaagtagt gatgtcaatc
     2221 atcaatctgc caagccatat caatgtcaat gaaatagaat taatgcctgt tactcaaact
     2281 tggaatggct tttatataga gcaaaatcaa tgagattttt agtatttttc ctactgcctt
     2341 tacttgcatt tgccaataca catcaagcta cggcaaatgc aaatttattt ggagttttca
     2401 ctcttatacc tcctttggtt gctatcactc tagcttttat tacaaaagat gtgatcttgt
     2461 ctctttttgc aggagtttta agcggaacct tcttgcttag tcttgcttct aatatttttc
     2521 aagccgacag cttaagtttt attcattttt ataatactgc gatagattct ttttcaaaaa
     2581 ttatttctta tattttagaa tcaacttcag atcctgtaaa tgctggtatc atcttgcaaa
     2641 ttttatgcat aggtgggctt gttgcactta tcaccaaaat gggtggcgca aaagctgtgg
     2701 ctataaaatt tgcaaaaaga gcaaaatcag cagtatcggc acaagtaaat acttggtttt
     2761 taggtttgtt aatctttttt gatgattacg ctaatttact catcgtagga cctatcatgc
     2821 gtcctttagc agataaattt aaaatttctc gtgaaaaatt tgcctttatt atcgattcta
     2881 cagctgcacc cgttgcaggg attgctgtga tttctacctg gataggttta gaagtatctt
     2941 taatcaaaaa tgcctatgaa gatataggca ttagcaatat cagcgctttt ggggtttttg
     3001 ttgaaaccat accctataga ttttacaata tttttatgct tttctttgtt ttaatgactg
     3061 cgcttatggg gcgtgaattt ggtcctatgt taaaagctga aattcgtgca agaactacag
     3121 gacaaatcgt tcctttatca aaatcaagca ccctagatac cgcagaactt gaagatcagt
     3181 ttttagctcc aaaagaagat attaaaatcc gtgcattaga tgctacgatt cctattttaa
     3241 ctttgattgt tttagctata cttggatttt attttaatgg actaagtact ttagaaggtg
     3301 aagaattact aaaagcaaat gcaaatcctt tatcttttga aacccttagg ctagcttttg
     3361 gaagtgcaaa ttcttctgtg gtgctttttc aagccgcctt atttgccgct attgtagcaa
     3421 tttttattgg agtgtatcgc aagattttta attttaaaga agcggttgaa acttggatat
     3481 atggttggaa aactatgatt tttaccatag ttttactttt gtttgcatgg tcgctttcaa
     3541 gcatagtaaa agagcttgga actccagaat ttatctcaag cttgctcgct gataaattgc
     3601 ctgaatttat cctacctgct accatttttg cttttgcttc gcttatttct tttgcgatag
     3661 gaacaagcta tgggactatg ggtattttaa tgcctttggc ggtgccttta gcttataagg
     3721 ttgcacaaat aaatgcaatg gatatggatg caatgcatca ttatatggtg attaatataa
     3781 gttgtgtctt aactggagcc atttttggaa accattgttc gcctatttca gacaacgtaa
     3841 tcctttcatc aatgagtgca aaatgtgatc atatggagca tgttcgcact caaattcctt
     3901 atgccttatt tatttgtgta atttctttat ttgctggtta tatacctgtt tctttagggc
     3961 ttagtgtatg gttggttctt cctttaaatt taattcttat tgcatttttg cttagaatta
     4021 tcggaaagaa agtttcatga gtcttcaaga atttggaaat tttttaaaat tagaagaaaa
     4081 agcttctttt ataaaagaat ttttcaaaga tttttatcaa ggaaatttcg agcttttttc
     4141 ttccaaagat aaacattacc gcacaagagc agagctttca ttttatcatg ataaagacga
     4201 aatttattat gcgatgtttg aaaataaaaa gaaaatcatc atagaaagct tagaatttgc
     4261 agatgaaaaa atcaccgctt ttatgcccaa actcttaaaa caaattcgca acaatacaaa
     4321 tttaaaagaa aaactttttg gtgtagagtt tttagcgact aaaaacgagt taagcaccac
     4381 tctactttat cataaaaata tagagcttat ttacaatgac ttaaataatt taagcttaga
     4441 acttgatgca aatttaatcg caagaagcaa aggtaaaaaa cttgttttta aaaaagaaaa
     4501 tttaagacaa gagcttgata tacaaggtag aaaaatattt tatgaattta acaatgattg
     4561 tttcatacag cctaatacct ccatcaatga aaaaatgata acttgggtgt gtgaaaattt
     4621 aaaaacccaa gaaagaaaag acttgcttga gctttattgt ggatatggaa attttactct
     4681 agctttagca atttttttta acaatgtact agccactgaa atttcaaaaa gcaatattaa
     4741 ttttgccttg cttaattgca agatcaacaa tatctcaaat atccatttta caagactttc
     4801 aagcgaggaa ttatcccaag ctttaaaaaa agaaagggaa ttttttcgct taaaagatat
     4861 tgatttagat aattttaatt tttctcatat tttagtcgat ccaccgcgtg caggacttga
     4921 taaaagtgta attgatttaa ttaaaaatta tgaaaacatc atttatattt cttgtaatcc
     4981 tatcagcttg aaagaaaatt taaaagaact tgctcttacg cataaagttg aaaaatttgc
     5041 gctttttgat cagtttgtta atactccgca tttagaatgt ggaatacttt taaaatcttt
     5101 acattctaag caatcttcaa tttgaaagtt gataaattat aaaaaataat aattcatcaa
     5161 cttagctaaa accacgataa aaatacaaag cataaaaaca aaaggatgta taaaacgcgt
     5221 taaaggattt tttctcttta gcacaaaatg aaaaaataaa gaaaacacca ctaaagacaa
     5281 aatactaaag gctaaaatca attttatcaa aaaaattaaa tttaaaggat taagatgaaa
     5341 gcttatcatc gcaccaccac ttaaaaatag caataatacg ataaaaggca taatcttaac
     5401 acccacggaa gaaaaaagat ttttatcaaa atttggattt tttctcttaa ttgtattgag
     5461 tataaaaata tcgacaaata aataacctat aaaaaagatt gcacagctta gatgaatgat
     5521 taaaatataa ggataagctt gaaccatatt tcactccttt tttaatagct tttaatattc
     5581 tagcaatttt ttatctttaa aaaattcact ttagttaatt ttatataaat atatttttaa
     5641 attaaaatct atttttaagc gaaataagat tatgattaaa tttttaaaat ttttatataa
     5701 agtaacaacg atggatgaaa atttaatcat agataaaata ctcaacaaca caaaaaccat
     5761 tgccatagta ggacttagcc ccgatgaaag caagccttct tttatgatag gacaattttt
     5821 acaagaaaat cattataaaa tttatcctat atatcctaaa tgtgatgaaa ttttaggaga
     5881 acgcgtttat cgaagcttag atgatatcga tgaaaaaata gatcttgttt taatgtttcg
     5941 caagggcgaa tttgcctctt cattactccc aagtattatc cgtaaaggaa ttcaaaattt
     6001 ttggctgcag cttggaattt gcaacaatga agttgctaaa gaatgcgaaa atttaaagat
     6061 taattttata caggataaat gcattatgcg tgaattgcca ctttatcaag ataggataag
     6121 caaatgttag aactgaacaa aatttatcaa gccaaacaaa aaattgctga ttttgtaagc
     6181 aaaactcctt ttatacactc ttctttttta agcgaacttt gcaaaagtga agtgtattta
     6241 aaaaatgaaa atttgcaaat tacaggagct tataaaattc gcggtgcata taacaaaata
     6301 gctaatttag acccagaagc taaaaaagca ggagttatag ctgctagtgc tggaaatcac
     6361 gctcaaggtg ttg
//
LOCUS       DARAII010000102         6294 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.102, whole genome shotgun sequence.
ACCESSION   DARAII010000102 DARAII010000000
VERSION     DARAII010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6294
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.102"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..719)
                     /locus_tag="SB143_001561"
     CDS             complement(<1..719)
                     /locus_tag="SB143_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEF9750079.1"
                     /translation="MDVRSEYLNFFKSKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FIGEVPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHESDDEAFELWQKHIQKERIYRFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGEEYFNGEEDYMGGDGDRFLEIWNLVFMQYERSADGKLTPLPKPS
                     IDTGMGLERVTAIKEGKFSNF"
     gene            836..1915
                     /locus_tag="SB143_001562"
     CDS             836..1915
                     /locus_tag="SB143_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEF9750080.1"
                     /translation="MNFINLQTQYLQYKEEIDSEIASVLSSSSFIGGAKLNEFEANLA
                     RYTHAQHAIGCSSGTSALYLALRALDIKQEDEVIVPSFTFIATAEMVALLGAKPVFVD
                     INLDNFNIDFELLKNAITPKTKAIIAVSMFGQMSNLQELNAFCESKNISLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCNDESIAKKLRILLNHGQTDRY
                     KHEFIGINARLDTLQAAILNVKLKHLDEEINKRQEIAKFYNENLTNCQIPKIDENAIS
                     AYAQYSVLVEDRARVLKAFEKANIPYAIHYPTPLHKQPCFSEFSHLKLEKSEFASKHI
                     LSLPFSAFLSQSEQESVIKVFKEGL"
     gene            1912..3024
                     /locus_tag="SB143_001563"
     CDS             1912..3024
                     /locus_tag="SB143_001563"
                     /inference="COORDINATES: protein motif:HMM:NF005085.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-independent methionine synthase II
                     family protein"
                     /protein_id="HEF9750081.1"
                     /translation="MKLDQVGSFLRPKILKEARENFALGKIDEEQLRSIEDSCIRDLL
                     EECDKAGIYYLSDGELRRSWWHLDFYWGFGGIKKIKKEKGYIFKGIETRAEGIEIESK
                     IECNNHPFLKDFERLMQIAKGLKIDTNRLKLTIPSPSMLLYMLFIRGGKNTEFNYYGK
                     DFTKLKNDILNAYENFYKEFAALGGVYLQLDDTSFGSLCDYEFCALNEINADDICEEY
                     VDFLNESLKTMPKNIMSAIHICRGNYRSRYVASGGYMKVAKKLFGELKVDKFFLEFDD
                     ERAGNFEPLKYINDQIAVLGILTSKTNESPSVEELKARVKIAAQFLNPKQIEISTQCG
                     FSSTEEGNEIFTHSQWEKIKLLKQVLSELENEGFFS"
     gene            3021..3875
                     /locus_tag="SB143_001564"
     CDS             3021..3875
                     /locus_tag="SB143_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEF9750082.1"
                     /translation="MKVGIVGLGKMGQNHLNELSKNKNFKINALFDMVENKNLNAPFF
                     TNLDEFLNQDNDIIIIATPTNSHLEIARKVFCKCKCVLIEKPLALNLNEIDEISNLAK
                     SYGVKVGVGFCERFNPAVLALKKELQNEEIISINIQRFSTYPQRISDVGILQDLAVHD
                     LDLLHFLSAEKIINANILKSFNKDKQREDESIITCKLEKTIACVHQSWNSTQRLRKIT
                     LVSKNHFYEANLADFSLSKDGQNLELMTQTPLFGEHMALYDLLLNKENYLANIQNAYA
                     VQEILEKF"
     gene            3995..4906
                     /locus_tag="SB143_001565"
     CDS             3995..4906
                     /locus_tag="SB143_001565"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEF9750083.1"
                     /translation="MKLVLFLNMGGATNLQDCETFLKNMFNDPYILGIKNKFIRRFVA
                     WIITKSRVKAMRENYKQMGGKSPLNELTQSLCKKLNAKTKDFKFDFVNLYVPPFANEV
                     LQKYTLSENDEIILFPLYPHHSSTTVTSSLEVLQNEILKQKIKAKIKIVDIFYEDELY
                     NETIVSHILTKKSEFDAKTLIFSAHSLPQSIIDKGDLYEKHVNHHVELLKERLKDHFD
                     EIILAYQSKLGPVKWLEPNTSDILANLDNKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(4966..6201)
                     /locus_tag="SB143_001566"
     CDS             complement(4966..6201)
                     /locus_tag="SB143_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEF9750084.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDIAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
BASE COUNT         2321 a         1059 c          977 g         1937 t
ORIGIN      
        1 tcaaaattgc taaatttacc ctctttgata gctgtaaccc tttcaagccc cattcctgta
       61 tcaatacttg gttttggcaa aggcgtaagt ttaccatcag cacttctttc atactgcatg
      121 aaaacaaggt tccaaatttc taagaaccta tctccatctc cacccatata atcttcttct
      181 ccattaaaat actcttcgcc ttgatcataa aagatctcgc tacaaggacc acaagggcct
      241 gtatcgccca tttgccaaaa attatcctta tcgccaaatc tataaattct ttctttttgg
      301 atatgttttt gccataattc aaaggcttca tcatcgcttt catgtacagt tacataaagt
      361 ctatctttag gaagttttaa cacctcagtt acaaattccc aagcataagc gatagcttgt
      421 tctttaaaat aatccccaaa gctgaagttt cctaacattt caaaaaaagt atgatggcga
      481 gcagtatagc ctacattatc taaatcattg tgttttcccc ctgctcttat acaagtttgg
      541 cagcttgttt tgcgtggtgg gtttggacga ggcacttctc ctataaatat acttttaaaa
      601 ggcaccattc ccgcatttgt aaaaagcaag gttgcatcat caggaactaa aggacttgaa
      661 ggtgtgattt catgaccctt agacttaaaa aaatttaaat attcacttct aacatccata
      721 agattttcct aagaaatttt tataaaagca tatcatacca aaattacttt aaattaagta
      781 aaactaaaat acaataagcc tttttaatta atttctttaa ttttcaaggt tttttatgaa
      841 ttttatcaat cttcaaactc aatatcttca gtataaagaa gaaatcgatt ctgaaatcgc
      901 aagtgtttta tcaagctcct cttttatagg aggtgcaaaa ttaaacgaat ttgaagcgaa
      961 tttagcccga tacactcatg cacaacacgc aataggatgc tcaagtggca caagtgcttt
     1021 atatcttgct ttaagggctt tagatatcaa acaagaagat gaagtcatag tgcctagctt
     1081 tacttttata gctaccgctg aaatggtcgc attacttgga gctaagcctg tatttgtaga
     1141 tataaattta gataatttta atatcgattt tgaactccta aaaaacgcca tcactcctaa
     1201 aacaaaagca attattgctg tgagtatgtt tggtcaaatg agtaatttac aagaactaaa
     1261 cgccttttgc gaaagcaaaa atataagctt gattgaagat ggcgcacaaa gttttggagc
     1321 aagctttaag ggtgaaaaat cttgctctat tgccaaaatt tcatgcacta gcttttttcc
     1381 ttctaagcct ttgggggctt atggcgatgg tggagcgatt ttttgtaacg atgagagcat
     1441 agctaaaaaa ttaagaattt tactcaatca tggacaaact gatcgttata aacatgaatt
     1501 tatagggata aatgctcgtc ttgatactct tcaagcagcc attttaaatg taaaattaaa
     1561 acacctagat gaagaaatta acaaaagaca agaaatagca aaattctaca acgaaaattt
     1621 gacaaattgc caaattccaa agattgatga aaacgccatc agtgcttatg cgcaatatag
     1681 cgttttagta gaggatagag ctagagtttt aaaagctttt gaaaaagcaa acattcctta
     1741 tgctatccat tatcctacac cacttcacaa gcaaccttgc ttcagtgaat tttcgcattt
     1801 aaaattagaa aaatcagaat ttgcgagtaa gcatatttta tccttgccat tttcagcatt
     1861 tttaagtcaa agtgagcaag aaagtgtaat taaagtgttt aaggaaggac tatgaaatta
     1921 gatcaagtgg gatctttttt aagacctaaa attttaaaag aagctagaga aaattttgcc
     1981 ttgggaaaaa tcgatgaaga acaacttcgc agcattgaag attcttgcat aagagatctt
     2041 ttagaagagt gcgataaggc gggaatttat tatttaagtg atggggaatt acgccgttct
     2101 tggtggcatc ttgattttta ctggggtttt ggcggcatta aaaaaatcaa aaaagaaaag
     2161 ggttatatct ttaaagggat agaaacaagg gctgagggca tagaaattga aagtaaaatc
     2221 gagtgcaata accatccttt tttaaaagat tttgaaagat taatgcaaat tgcaaaaggt
     2281 ttaaaaatag atacaaatcg cttaaaactt accattccaa gcccttcaat gcttttatat
     2341 atgcttttta tccgcggggg caaaaacaca gaatttaatt actatggtaa agattttaca
     2401 aaacttaaaa atgatatttt aaatgcttat gaaaattttt acaaagaatt tgcagctctt
     2461 ggtggagtat atttgcaact tgatgataca agctttggtt ctttatgtga ttatgaattt
     2521 tgcgctttaa atgagatcaa cgcagatgat atttgtgaag aatatgtaga ttttttaaat
     2581 gagagtttaa aaactatgcc aaaaaacata atgagtgcaa ttcatatttg tcgtggaaac
     2641 taccgcagtc gctatgtagc aagtgggggc tatatgaaag tcgctaagaa gctttttgga
     2701 gaacttaaag tcgataaatt cttcttagaa tttgatgatg aaagggctgg aaattttgaa
     2761 cctttaaaat acatcaacga tcaaattgcg gttttaggaa ttcttactag caaaaccaat
     2821 gaaagtccaa gcgtagaaga gttaaaagca agagtaaaaa tagcagctca atttttaaat
     2881 ccaaaacaaa ttgaaatcag cacacaatgt ggctttagct ccactgaaga aggaaatgaa
     2941 atcttcactc attctcaatg ggaaaaaatc aaactcttaa aacaagtttt aagcgaactt
     3001 gaaaatgaag gatttttctc ttgaaagtag gaattgtagg ccttggaaaa atggggcaaa
     3061 accatttaaa cgagcttagt aaaaataaaa attttaaaat caacgctttg tttgatatgg
     3121 ttgaaaataa aaatttaaat gcgccttttt ttactaattt ggatgaattt ttaaatcaag
     3181 ataatgacat catcatcatt gcaacaccga caaattcaca tttagaaata gctagaaagg
     3241 ttttttgtaa gtgtaaatgt gtattaatcg aaaagccttt agcgctgaat ttaaatgaaa
     3301 tagatgaaat ttcaaattta gctaaaagct atggtgtaaa agtgggtgtg ggattttgtg
     3361 aaagatttaa tcctgcagtt ttggctctaa aaaaagagct tcaaaatgaa gaaattatca
     3421 gcatcaatat acaaagattt tccacctatc cgcaaagaat cagtgatgta ggaattttac
     3481 aagatttggc tgtgcatgat cttgacttac ttcatttttt aagcgcagag aaaattataa
     3541 acgctaacat tttaaaaagc ttcaataaag acaaacaaag agaagatgaa agcattataa
     3601 cctgcaagct agaaaaaacg atcgcttgtg tgcatcaaag ctggaacagt acgcaaagac
     3661 taagaaaaat tacacttgtg agtaaaaatc atttttacga ggcaaattta gcagattttt
     3721 ccctaagtaa agatggacaa aacttagaac tgatgacaca aacacccctt tttggcgaac
     3781 atatggcttt atatgatttg cttttaaata aggaaaatta cctagcaaat atacaaaatg
     3841 cttatgctgt gcaagaaatt ttagaaaaat tttaattttt ctaaaataat gcaataaact
     3901 ccaaataact tgagtttcaa taaaacactt agataaaaat ttattgattt taaatccata
     3961 ctgaagtaaa ataaaattaa aaaaaggttt ttagatgaaa ttagttttat ttttaaatat
     4021 gggcggagcc acaaatttac aagattgtga aactttttta aaaaatatgt ttaatgatcc
     4081 ttatattttg ggtattaaaa ataaatttat aagaagattt gtggcgtgga ttattacgaa
     4141 atctcgcgta aaagctatga gagaaaatta taaacaaatg ggtggaaaat ctccactcaa
     4201 tgaacttact caaagtttgt gcaaaaagct taatgcaaaa acaaaagact ttaaatttga
     4261 ttttgtcaat ctttatgtgc cgccttttgc caatgaagtt ttgcaaaaat acactttaag
     4321 tgaaaatgat gaaatcattc tttttccact ttatccacac cactcaagca ccacagttac
     4381 ttcatcgctt gaagttttgc aaaatgaaat tttaaaacaa aaaatcaagg caaaaataaa
     4441 gattgtagat attttttacg aagatgagct ttataatgag acgattgttt ctcatatttt
     4501 gaccaaaaaa agtgagtttg atgctaaaac tttaattttt tcagcacatt ctttaccgca
     4561 aagtattatc gacaagggcg atttatatga aaaacatgtc aatcatcatg tagagctttt
     4621 aaaagaaaga ttaaaagatc attttgatga gattatctta gcctatcaat caaaattagg
     4681 tccagtaaaa tggcttgagc caaatacgag cgatattttg gcaaatttag ataacaaagc
     4741 tttgatttat cctatttctt tttgcataga ttgttctgaa acgatttttg agctaggtat
     4801 ggagtataaa catttagcaa agtgcgatta tgatttaatc acttgcccaa atgatagtga
     4861 tgaatttatc cactttattt taaagtattt atctgatttt aattaagaat gattttgaag
     4921 tccttgttta tgattacaag gactttttag taaaaattta gccaactaag ctaaagtata
     4981 agctttttct ccgtgcaaac tcacatctaa gcctttttgc tctacttctt cttttactct
     5041 taagtctgta aaacaagaga taatcttaaa aataacaaag cttataagag ctgacaaaac
     5101 cacacaaatc acaatagcaa aaatttgctc ttttaaaagt tccaaacttc cgctgataaa
     5161 aaatccctcg ccaagtgcat tttgggcaat cacattagga tttactttag cacttgcaaa
     5221 aagccctgtg gcaattcctc cccaaatacc tccgattcca tgtaaagaaa aggcatctaa
     5281 agaatcatcc catttgagtt tgtatttgat aaaacttaaa ccaaaataac aaaacacaga
     5341 agacaaagtc cctataacaa gagaagcata aatatctaca taaccgcaag ctggagtaat
     5401 tcccacaagc cctgctacaa gcccactaag tccacctaaa atagtcggtt ttttatggat
     5461 gagccactca agtaccaccc aagataaaaa gccacaagct gctgatataa tacttactat
     5521 aaaagcattg atagcaatat cattcatttc gccagcactt ccagcattaa aacctaacca
     5581 tcctataaaa agcaaaatcg cacccaagaa agcataagga atagaatgcg cgtttttatc
     5641 ctcatcatca ctttttctag cgcctaccat caaagctcct acaagtccgg caaccccaga
     5701 gctgatatgc acaacaccgc ccccagcaaa atcaaggctt cctcttttaa gcaaaaaccc
     5761 ctcactactc caaatcatat gcgctaacac atcataaact aaagtactcc aaaaaagtaa
     5821 aaatatcacc aaaacaccca gtttaattct tccaaccaaa gagcctgtta tgatggcaga
     5881 tgcaataagt gcaaacatca tttgaaaaat tacaaaaaga atatttggaa cacctgaagc
     5941 attatatccg ctaataccct ctaagaggaa attctcgaaa tttcctacaa gcccaagtcc
     6001 ttcatcttta ccaaaagaaa gactaaatcc aagcactacc cattgtaaag taataacacc
     6061 aaaaacaata aagcaattca ttatggtatt aagagtattt ttacttctta ccatacctga
     6121 ataaaacatt gccaaagctg gagtcataag caaaactagc aaagtacaca acacaataaa
     6181 acttgaattt atcgcattca tttacctgtc ctttcttaca aaatttaatt gcgagataat
     6241 tatatttaaa atggtttaaa aaaatataaa tttaagaaat attttatata tttt
//
LOCUS       DARAII010000103         6208 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.103, whole genome shotgun sequence.
ACCESSION   DARAII010000103 DARAII010000000
VERSION     DARAII010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6208
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.103"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1206
                     /locus_tag="SB143_001567"
     CDS             <1..1206
                     /locus_tag="SB143_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEF9750085.1"
                     /translation="DTKEVKRMMVDEVKEFPKSAFLHELLSPLLGESIFTTNGEVWKK
                     QRELLRPSFEMTRISKVFNLMSEAVSDMMKRFEKYPNASIIEVDEAMTFITADVIFRT
                     IMSSKLDEEQGKKILDAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQ
                     ALSDIIKPRYDAVSSGKAENFEDILGSLLLVVDAQTNQRFSFEEILDQVAMLFLAGHE
                     TTASSLTWTLYLLSLYPDEQEKAYKEIIQVLQGENIQISHLKQFRYLTHIFKESLRLY
                     PPVGFFAREAKKDTKVRDKMIKKGSGVVIAPWLIHRHEGFWANPHEFKPSRFEGEYKK
                     DAYLPFGVGERICIGQGFAMQEAILILANILKKYKLELEEGFVPDVVGRLTVRSANGM
                     RIKFSKREP"
     gene            1203..1625
                     /locus_tag="SB143_001568"
     CDS             1203..1625
                     /locus_tag="SB143_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750086.1"
                     /translation="MKRVKARIRPNFRNRIKRNLKGSLKEKLAGTILLCAIVPLAICG
                     YLLIVIVGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARVVI
                     KITNFFQKDHCKRANKREQPVVDFILSRNLDKQTIGKR"
     gene            complement(1628..1975)
                     /locus_tag="SB143_001569"
     CDS             complement(1628..1975)
                     /locus_tag="SB143_001569"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002808698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEF9750087.1"
                     /translation="MRIGCDIVAISRIDTIYQKHGNAFLDKFLNQNEQKLIKSSSTLA
                     GFWAAKEAASKALGIGISKECGFLDIEISKDNKNAPHLKFASHILENFKINSTSLSIS
                     HDNGFAIAVVALG"
     gene            complement(1975..2511)
                     /gene="fliL"
                     /locus_tag="SB143_001570"
     CDS             complement(1975..2511)
                     /gene="fliL"
                     /locus_tag="SB143_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEF9750088.1"
                     /translation="MDEELENNEEKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKAAPKEEAKTDKAKVTAPAQRGSDFANIGPMYPLDPFTLNLLSNSGSRYVK
                     CTIELEQNTELLKPELDKKVAVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            2623..3987
                     /locus_tag="SB143_001571"
     CDS             2623..3987
                     /locus_tag="SB143_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEF9750089.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLAKGCKNVS
                     VGYDARYSADELYRYLVSGLNKAGIQVYNIGLVPTPLGYFSLYEGMKFDANIMITGSH
                     NPKDYNGFKITIGKESFFGAELKEFSKEVYKHLEDEIEENLEAQKYDILSLYVNFMCE
                     QFNFLKDFNYKFAIDCSNGAAGVVIEPLVKALNLKAHVMFSNPDGQFPNHEPDPTEEK
                     NLHAIKNFLNENQEYPLAFAFDGDADRMVALSKTHIFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGYDLESMISALPKLYTTPEIKIPVSEEEKFKLVDEFKKAIEKGAL
                     EGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEASSLEQAKELEAKVFKLFNDI
                     KESV"
     gene            complement(4618..4944)
                     /gene="rsfS"
                     /locus_tag="SB143_001572"
     CDS             complement(4618..4944)
                     /gene="rsfS"
                     /locus_tag="SB143_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEF9750090.1"
                     /translation="MQERVDLIVKILDEKKAEDIKTFDMSEQDYFVKYVIIAATLGEK
                     HALSLIDELKIKLKAKGEEFLNIESSEEWSVIDLGDILIHLLTPEHRGIYNIEELLES
                     LKKIKA"
     gene            complement(4973..5518)
                     /gene="nadD"
                     /locus_tag="SB143_001573"
     CDS             complement(4973..5518)
                     /gene="nadD"
                     /locus_tag="SB143_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEF9750091.1"
                     /translation="MKIALFGGSFDPPHKGHDAIVKEALAKLDIDKLIIVPTFINPFK
                     KGFFADEKQRFAWVNKLWGNLEKVEICDFEIKQKRPVPSIESVEYLYKIYHPSKFYLL
                     IGADHLEKLHLWHDFERLNSLVEFIIANRNDIEIPKNFKDLKTNIKIASSFIRSTLDT
                     HEVCDEIKNEVKNYYEKLQKN"
     gene            5580..>6208
                     /locus_tag="SB143_001574"
     CDS             5580..>6208
                     /locus_tag="SB143_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HEF9750092.1"
                     /translation="MAVKVAINGFGRIGRCVARIISKRDDIELVAINDTTDIELTKYL
                     FKYDTVHGEFEGSVENEGDDLIINGKKIKVFKSRDIKELDFAKYGAQIVLECTGAHLT
                     IEKCQGFLDMGVQKVIMSAPAKDDTPTYVLGVNSQNYKGENIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKTKDKRRSRAAAQNIIPTSTGA"
BASE COUNT         2118 a          913 c         1134 g         2043 t
ORIGIN      
        1 gatactaaag aagttaaaag aatgatggtt gatgaggtta aagaatttcc aaaaagtgca
       61 tttttacatg agcttttaag ccctctttta ggggagagca tttttacaac aaatggtgag
      121 gtttggaaaa agcaacgcga acttttacgc ccaagttttg aaatgactcg tatttcaaag
      181 gttttcaatc tcatgagtga agcagtaagc gatatgatga agcgttttga aaaataccct
      241 aatgcttcta ttatcgaagt ggatgaggct atgactttca tcactgctga tgtcattttt
      301 cgtaccatca tgtcttctaa gttagatgaa gagcaaggaa agaaaatcct agatgctttt
      361 gtgacttttc aagaacaaag cgtacatacg gctatgcgtc gtatgtttcg tttccctaaa
      421 tggctttctt atgtgttggg tgatcgtaag cgtgctaaag cgggcgatgt gatcaggcaa
      481 gctttaagtg atatcataaa gccaagatat gatgcagtaa gtagcggaaa agctgaaaat
      541 tttgaggata ttttaggctc tttactctta gtagtagatg cgcagactaa tcaacgcttt
      601 tcttttgagg aaattctaga tcaagtggct atgcttttct tagcaggtca tgaaacaaca
      661 gcaagctctt taacttggac gctttatcta ctcagccttt atcctgatga acaagaaaaa
      721 gcttataaag aaattattca agttttacaa ggtgaaaata tacaaatttc acatttaaaa
      781 cagtttagat acctaaccca tatctttaaa gaatctttaa gactttatcc tcctgtaggc
      841 ttttttgcaa gagaagcaaa aaaagataca aaggtaaggg ataagatgat taaaaaaggt
      901 tcgggtgttg ttatagcacc ttggctgata cacagacatg aaggcttttg ggctaatccg
      961 catgaattta aaccttctcg ttttgaaggc gagtataaaa aagatgctta tttacctttt
     1021 ggagtaggag agagaatttg tataggtcaa ggttttgcga tgcaagaggc tattttaatt
     1081 ttggccaata tcttaaaaaa atacaaatta gagcttgaag agggttttgt tccagatgtg
     1141 gtgggtcgtt taacggtgcg ttctgcaaat ggaatgagga taaaatttag taaaagagag
     1201 ccatgaaaag agtcaaagca agaattcgtc ccaattttcg caaccgcatt aagcgcaatc
     1261 taaaaggaag tttaaaagaa aaactagcag ggacgatctt actttgcgcc atagtgcctt
     1321 tggcaatttg tggatattta ctcatagtga tagtgggaac tttttttaat acagctagag
     1381 caaggcaagg tgtaagggct ttggatcatt tcgtaaatgc aagtttattt aatggctatg
     1441 cttgggaaag tgtatcttca cacgcgtggc gcgaaagaaa tagaaaaaaa tgggcaaggg
     1501 tagtgattaa aatcacaaat ttttttcaaa aagatcattg caaaagagcc aataaaagag
     1561 aacaacctgt cgttgatttt atactttcaa gaaatttaga taagcaaact ataggaaaaa
     1621 gataaattta gcctaaagca accacagcga tagcaaaacc attatcgtgc gagatactaa
     1681 gagaagtaga attgatttta aaattttcta atatatgaga agcgaatttt aaatgaggag
     1741 catttttgtt atcttttgaa atttctatat ccaaaaagcc acattctttt gaaattccta
     1801 tgcccaaagc tttacttgct gcttcttttg cagcccaaaa acctgctaaa gttgagctag
     1861 attttatcaa tttttgctca ttttggttta gaaatttatc aagaaaagcg ttgccatgct
     1921 tttgatagat tgtatctatc ctagaaatgg caactatatc gcaacctata cgcatcaaga
     1981 aactacaaaa tcagtaaaat aaacattttt gatgaagcca tcggtaagaa tttcgttgat
     2041 ttttccaaca agctcatcct taagtctttc tttgcctttt tgcgtgctaa cctcttcaaa
     2101 ggtttttgca gttaaggtgc ggataatgat atcgcgaatt accgctactt ttttatcaag
     2161 ctcaggtttt aaaagctctg tattttgctc taattctata gtgcatttta catatcttga
     2221 gccgctatta ctaagtaaat ttaaagtaaa aggatcaaga ggatacatag gtcctatatt
     2281 tgcaaaatca cttccgcgtt gcgccggtgc tgtcacttta gccttatcgg tttttgcctc
     2341 ttcttttgga gctgctttga cttcgctttc atcgcttgag ctacttgaaa taagccatgc
     2401 aatcacaccc atgatgctaa gaagtagaac aaaaagtaaa atcactataa tgataacaag
     2461 cgaaccgcct tttttctttt tttcttcgtt attttctaat tcttcatcca ttaatttttc
     2521 ctttatttag tgaaattaat gtaaaattgt agcaaaattt tcttttctat ccaaatttta
     2581 cattataaaa agaaatttat taaaaagatt taaggaaaaa ttatgctaga tgtgattttt
     2641 agagaatacg acatacgcgg actttatggc aaagaactca atgaaaaaag tgtcaaagct
     2701 ataggttttt gtttgggaca aaccatgctt gcaaaaggtt gtaaaaatgt aagcgtgggt
     2761 tatgatgcaa gatatagtgc tgatgagctt tatagatatc tagttagcgg gcttaataaa
     2821 gcaggcatac aagtttacaa cataggactt gtccccactc cacttggata ttttagcctt
     2881 tatgagggta tgaaatttga tgcaaatatt atgatcacag gttcgcacaa tccaaaagat
     2941 tataacggct ttaaaatcac cataggtaag gaaagttttt ttggagctga acttaaagaa
     3001 ttttcaaaag aagtttataa gcatttagag gatgagattg aagaaaattt agaggctcaa
     3061 aaatacgata ttttaagtct ttatgtgaat tttatgtgtg agcaatttaa ctttttaaag
     3121 gattttaatt ataaatttgc aatcgattgc tccaatggag ccgctggggt tgttatagag
     3181 cctttagtaa aagctttaaa tttaaaagct catgttatgt tttcaaatcc tgatggacaa
     3241 tttccaaacc acgaacctga tcctacagaa gaaaaaaatt tgcacgctat aaagaatttt
     3301 ttaaatgaaa atcaagaata tcctttagca tttgcttttg atggtgatgc agatagaatg
     3361 gtagctttga gtaaaactca tattttttgt ggggatgagc tttgttattt gtttgcaaaa
     3421 aatattccta atcctagaat tttaggcgag gtaaaatgtt ctaaaaatct ttttgatgag
     3481 gtggcaaaat ttggtactat ttttatggga aaaacaggac attcaaatat taaaaaaatg
     3541 atgaaagaaa aagatattga cttagcagct gaagtaagcg gccatatttt ctttaaacac
     3601 agatattttg gatatgatga tggaatttat gcttttttaa gagctttaga acttgtttat
     3661 aagggctatg atttagaaag tatgatcagt gccttgccaa aactttacac tacgcctgag
     3721 attaaaattc cagtaagcga ggaagaaaaa ttcaaacttg tggatgaatt taaaaaagcg
     3781 atagaaaagg gtgccttaga aggagtaaag agtctttgtg aaatcgatgg agccaggatt
     3841 gattttggtg atggatgggc tttacttcgt gcgtccaata ccagccctta tcttatcacg
     3901 cgttttgaag caagttcttt ggagcaagca aaagaacttg aagctaaagt atttaaactt
     3961 tttaatgata ttaaagaatc ggtttaataa gtattttagg tttatttgta aatttagaga
     4021 aaagcacgaa aacaagagct ttttctcatt tatataacgc gttgtttgtg tgagaatgta
     4081 gtaaaaatat acactaaaga tccactttta tgataaaaaa cttaaacaaa attgtgtgta
     4141 catttttcct aaaagccttt gatggtattt ttgccacaca tccaagcctt gaaaaacgca
     4201 taggatattt agaaaaatat tttggagatt cgttctaaaa tggcataata attgcaacga
     4261 ttagtaaaat tgcaaatacc aaagaaaaaa gattttctaa aaaataaaaa gttttgccta
     4321 aaaaagaaat ttctaaatga aagggcacaa ggatgataaa gactactcta agtgggatta
     4381 aaatcattcc tatttgaagg aaaaatttaa aaaattctca aaaatcacta tcaaataaac
     4441 caaataagat aattaaacca aaaaagaaga gatatccgcc caaaacatgg gcgaattgaa
     4501 atttaaacga tatcttgctt gacaatgagg gcaaaaaagc tcattggaaa actcaaaaaa
     4561 aatcataaaa tttgtttatt tttttgaaat ttttagtgta ttttttgcat tttaagctta
     4621 tgccttgatt tttttaagac tttctaacaa ttcttctata ttgtaaattc ctcggtgctc
     4681 aggtgttaaa agatggataa gtatatcacc tagatcaatg acactccatt cttcactgct
     4741 ttctatattt aaaaattctt cacccttggc tttgagtttg attttaagtt catcgattaa
     4801 agataaggca tgtttttcac ccaaggtagc tgcgatgatg acatatttta caaaataatc
     4861 ttgctcgctc atatcaaagg tttttatgtc ttcagctttt ttttcatcta aaattttaac
     4921 gattaaatct actctttctt gcattttttt cctttaaatt tttgaaattg tatcagtttt
     4981 tttgtaattt ttcatagtaa tttttcactt catttttaat ttcatcgcaa acttcatggg
     5041 tatctagggt gcttcttatg aaagatgagg cgatttttat attggttttt aaatctttaa
     5101 aattttttgg aatttctata tcattgcgat ttgcgatgat aaattctact aaagaattaa
     5161 gtctttcaaa atcatgccaa agatgaagtt tttctaaatg atccgcaccg attagaagat
     5221 aaaatttgct aggatgataa attttataaa gatattctac gctttcaatg cttggtacgg
     5281 ggcgtttctg cttgatctca aagtcgcaaa tttctacttt ttctaaattt ccccaaagtt
     5341 tatttaccca agcaaatctt tgtttttcat cggcaaaaaa tcctttttta aaaggattga
     5401 taaaagtagg cacaataatg agtttatcga tatcaagttt tgccaaagct tctttgacaa
     5461 tagcgtcatg tcctttgtgt ggtgggtcaa aactgccacc aaaaagtgca attttcatta
     5521 aaattttaac ctttttttag taaaatatta gcataaaaaa cttcgcaaaa ggaaacaaaa
     5581 tggccgtaaa agttgctata aatggttttg gtcgcatagg aaggtgtgta gcaagaatta
     5641 tttcaaaacg agatgatatc gaacttgtag cgataaatga tactacagat atcgaactta
     5701 caaaatatct ttttaaatat gacacagtgc atggagaatt tgaaggcagt gtggagaatg
     5761 aaggggatga tttaattatc aatggtaaaa aaatcaaagt gtttaaaagc cgcgatataa
     5821 aagaacttga ttttgcaaaa tacggtgcac aaattgtttt agagtgcaca ggggctcatt
     5881 tgacaataga aaaatgccaa ggatttttag atatgggagt gcaaaaagtg atcatgagtg
     5941 ctcctgcaaa agatgatact cctacttatg ttttaggtgt aaattcacaa aattataaag
     6001 gtgaaaatat catctctaat gcaagttgta cgactaactg cttaggtcct gtttgtcgtg
     6061 ttttacaaga taatttcggc atagaaaaag gactgatgac aactatacat gcttatacta
     6121 atggacaaag cattatcgat gcaaagacta aagataaacg ccgctcgcgt gctgctgctc
     6181 aaaatatcat tccaacttct acaggcgc
//
LOCUS       DARAII010000104         6104 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.104, whole genome shotgun sequence.
ACCESSION   DARAII010000104 DARAII010000000
VERSION     DARAII010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6104
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.104"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..233)
                     /locus_tag="SB143_001575"
     rRNA            complement(<1..233)
                     /locus_tag="SB143_001575"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(713..2350)
                     /locus_tag="SB143_001576"
     CDS             complement(713..2350)
                     /locus_tag="SB143_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002803230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP four helix bundle domain-containing protein"
                     /protein_id="HEF9750093.1"
                     /translation="MNRLGISARLYFSFALIIFIMLFIAVFSIAKVNFLDKTLTAATG
                     ENALISRQAIDFRGSIHDRSILIRDVVLAQDQEDLRKTLAQIQKLEKDYEEAELILND
                     IVAKGGGDSNVRSMMEDIAKTKKNTVQIYQKIIDAVVKENDIQSATKMVLDSARPEFI
                     LWLAQTNKLIDYQELANQELTQIALLESKSFQFIMMSIIIIALIISIVIAYLIVRYIK
                     KSVGGEPRDVNRIITEVANGNLTQPIHTEYKQSILYSISRMQNQLRNIVQKMITISNE
                     LNHKADLVVGRISETEKAVIFQGETSRESALKIREISQKTQNVSKMALETEENSKNTS
                     QVCQNNKKYAEDTASQMEYIASNSSRVSQQIALLSEHAKNIGTSTELISEITDQTNLL
                     ALNAAIEAARAGDVGRGFAVVADEIRKLAEKTGEATDQIAIINKQIQEETIATVGVIE
                     ESIPLISQGKSLSEEVRDSVDLIYKQANDSLFKAQEVNQEVAAQVKLMEEIKEKIITV
                     ADISSKTQQAVSENKNAMTELKNISDNLQAEIAIFKL"
     gene            complement(2417..3184)
                     /locus_tag="SB143_001577"
     CDS             complement(2417..3184)
                     /locus_tag="SB143_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEF9750094.1"
                     /translation="MKKFIKSKDTSDAFTLFELVLVVLILGLVISIAQINLKQDRLMQ
                     GAKQILNDIRYVRTLAMTQESFRDLELAVAKREWYKSRWQLYFINSAATNYEQTYTIF
                     LDKNGDGNANLGKTEINIDREIAVDIINPKKLMNSGQSGVIDKSDSKTTQRFNIFKKF
                     GIKKVEFKGSCRGSTRIVFDERGRLYSPLRTSQGVYDKNLAKTNQDCVIRLSSIQANQ
                     ICIIVNPLSGFTYIPKFQDFNKQMIMINGVLSQCSKI"
     gene            complement(3153..4376)
                     /locus_tag="SB143_001578"
     CDS             complement(3153..4376)
                     /locus_tag="SB143_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750095.1"
                     /translation="MEKIKNYKLIILLLAFDLLALLYGISTLSISADEAKIYFEEKGS
                     FLFLNHSLLYYLTHFGTFIFGQNDFGLRIPILFFHFLSCILLYILALKYTKTHFDSLL
                     ALLLFVLLPGTVASALLVNEASIVIFLTLAIICAYEYEKKWIFYPLLILALFVDKSFN
                     ILFLTFFFFGIYKRNSFLLTLALVLFGLSISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFIYFFYVVYRLTFKEQKSLLWFLMSVTFIFCSLLSLRQKLYLEDFLPFCVICTPLL
                     IKTLMASYRVRLPQFRLRYKIFIECSIIFLLFCYFVIIGNQILYYFVSDPKYNFANNY
                     HLAKELSKELKKQEIFKLRVGTSLQPRLKFYGIEDSNTFYLKSIKNKDQLDKNKKNIT
                     IKLGKFEKIYQIQRY"
     gene            4656..5240
                     /locus_tag="SB143_001579"
     CDS             4656..5240
                     /locus_tag="SB143_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEF9750096.1"
                     /translation="MQTIDQIFQAQIEIKKSTFLSYLCPFKDFKNLLVNLKKEHPKAV
                     HFVYAYRTLNEYNQIIEDKSDDGEPKGTSGIPSLNVLRGYDLVNTAVITVRYFGGTKL
                     GTGGLVRAYSDAANAAINNASLLTFEFKKNIKIAIDFKNLNRFEHFLRTHSLEFERDF
                     KNEKVILSLNLNEEEEQKFEIFCAQFTPFEIEKL"
     gene            complement(5272..5649)
                     /locus_tag="SB143_001580"
     CDS             complement(5272..5649)
                     /locus_tag="SB143_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750097.1"
                     /translation="MQVSYKTISSYEYDAISGQYKQVDKQVEDYSSTSDSDFMDILSK
                     LEENSGISSTEENLQNNTQSSNSNSSQYAQMSSMYAYRFRQNEGELSLKAQSASVHND
                     LLNQNANGQNKDSSLLGDLLNAI"
     gene            complement(5700..6035)
                     /locus_tag="SB143_001581"
     CDS             complement(5700..6035)
                     /locus_tag="SB143_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750098.1"
                     /translation="MMAKFRIQYSAGFGHFTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYNTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKIRDENCKRAKEEFIRDNELD
                     VEHLPTHGD"
BASE COUNT         2131 a         1017 c          791 g         2165 t
ORIGIN      
        1 agtctcatcc tacaccgaaa aactttccct actcaacttg tgttaagcag gagtatagag
       61 tattagcagt cgtttccaac tgttgtcctc ttgtgtaggg cagattaact ataccttact
      121 cacccgtgcg ccactaatcc acttctagca agctagaagc ttcatcgttc gacttgcatg
      181 tattaggcac gccgccagcg ttcactctga gccaggatca aactctccat aaaaattata
      241 gatagtttaa tctttttctt caaagaaaaa gtaatgaaga ttaaaaagaa aaacttttaa
      301 tctttaaata tttagattga atagatttta cataattact tatgcctaaa tccttctggc
      361 tcaatcgatc acttatttag atttcaaaga ttgactaata agatttgaaa taacaatatt
      421 aattttaaag aacaaaaaca aaaaatcatt tattatatgt aaataaagtt tagtaataat
      481 aaagttttat aaacttagat tgctttagct aggattaaag attaatttaa aactagaaac
      541 atagggttta taaaatctta tatttaactt tagttaactt tagactataa tttaaagatc
      601 ttaagtcctt ttctgaaaaa ggaaatgaaa gtataaccaa ttaagcttaa aggaggatta
      661 aataaggcta gaaatttagc cttatttttg ggtggttggg ggttataggt gcttagagct
      721 tgaaaatagc tatttcagct tgaagattat ccgagatatt ttttagttct gtcattgcat
      781 ttttattttc actaaccgct tgttgagttt tagaagaaat atctgccact gttataattt
      841 tttctttaat ttcttccatt aattttactt gggcggctac ttcttgattt acctcttgtg
      901 ctttaaaaag actatcatta gcttgtttat agattaaatc cacgctatct cttacctctt
      961 cacttaaact tttaccttga gaaatcaatg gtatagactc ttctataacg cctactgttg
     1021 ctatcgtttc ttcttgaatt tgtttgttaa ttatagcaat ttgatctgtt gcctcgcctg
     1081 ttttttcagc caatttacga atttcatcag caacgacggc aaaacctcta cctacatctc
     1141 ctgctctagc agcttctatg gccgcgttta gggcaagtaa attagtttga tctgtaatct
     1201 cgctaataag ttctgtactt gttcctatat tcttagcatg ttcgctaagc aaggcaattt
     1261 gctgagaaac tctagaagaa ttgcttgcga tatattccat ttgagaagct gtatcctcgg
     1321 catatttttt attattctga caaacttgac tggtattttt tgaattttct tctgtttcta
     1381 gagccatttt ggaaacattt tgtgtttttt gactgatttc tcgaatttta agagcagatt
     1441 ctctagaagt ttcaccttga aaaatcactg ccttttcagt ttcacttata cgacctacca
     1501 ccaaatcagc tttgtggttt aactcattag aaatagtaat cattttttgg actatatttc
     1561 gtaattgatt ttgcattcta gaaatagaat aaagtatact ttgtttatat tctgtatgaa
     1621 ttggctgtgt taaatttcca ttagcaactt cggtgataat tctatttaca tctcttggtt
     1681 caccacctac ggatttttta atatatctca ctatcaaata agcaataact atagaaataa
     1741 ttaaagcaat tataatgata ctcatcatga taaattgaaa agatttactt tctaaaagtg
     1801 ctatttgagt taattcttga ttggctaact cttgataatc aatcaattta tttgtttgag
     1861 ccaaccataa aataaattct ggtctagcag aatctaaaac cattttagtt gctgattgaa
     1921 tatcattttc tttcaccact gcgtcaataa tcttttgata aatttgcacg gtatttttct
     1981 tagtttttgc aatatcctcc atcatagagc gtacatttga atcaccaccg cccttagcta
     2041 caatatcatt taaaataagc tcagcttctt cataatcttt ttccaatttt tgtatttgag
     2101 ctaaagtttt tcttaaatct tcttgatctt gtgctaaaac gacatcacga attaaaattg
     2161 atctatcatg gatacttccc ctaaaatcaa tcgcttgacg agaaatcaaa gcgttttccc
     2221 ctgttgctgc tgtaagagtt ttatctaaaa aattcacttt agctattgaa aaaacagcta
     2281 taaacagcat aataaaaata atcaaagcaa aactgaaata caatcttgct gaaattccta
     2341 atcgattcat tattttctcc tttgtttaat atttgcattc aaattatagc aaatttatat
     2401 taaaaattaa agcattctaa attttagaac attgagaaag tacaccattt atcattatca
     2461 tttgcttgtt aaaatcttga aatttaggta tgtaagtaaa accactaagc ggattgacta
     2521 taatgcaaat ttgatttgcc tgtattgagc ttaagcgtat gacacagtct tgattagttt
     2581 tagctaaatt tttatcataa acaccttgag aagttcgcaa aggagaatat aatcttcctc
     2641 tttcatcaaa aactatcctt gtagaacccc tacacgaacc tttaaattct acttttttta
     2701 taccaaattt tttaaaaata ttaaatcttt gagtagtctt actatcgctc ttatcaataa
     2761 ctccactttg tcctgaattc attaattttt tggggtttat aatatctaca gcaatttcac
     2821 gatcaatatt gatttcagtt tttcctaaat tagcgtttcc atcaccattt ttatctaaaa
     2881 atatcgtata agtttgctca taatttgttg ctgctgaatt gataaaatat aattgccatc
     2941 tacttttata ccactctctt tttgccactg ctaattccaa atccctaaaa ctctcttgag
     3001 tcattgctaa agttcttaca tagcgtatgt cattaagaat ttgctttgca ccttgcatga
     3061 gtctatcttg ttttagattg atttgtgcta tggaaatcac aaggcctaag attaaaacaa
     3121 ctaaaactag ctcaaaaagc gtaaaagcat cactagtatc tttggatttg ataaattttt
     3181 tcaaattttc ctagctttat tgtaatattt tttttatttt tatcaagctg gtctttattt
     3241 ttaatacttt ttagataaaa agtattacta tcttcaatac catagaattt caatcttggc
     3301 tgcaaagatg tgccaactct taatttaaaa atttcttgtt ttttaagctc tttgcttaat
     3361 tctttagcaa ggtgatagtt attagcaaaa ttatattttg gatcagaaac aaaataatat
     3421 aaaatttgat ttcctatgat aacaaaataa caaaatagta aaaaaatgat agagcattct
     3481 ataaaaattt tatatcttaa tctaaattgc ggtaaacgca ccctataact tgccatcaag
     3541 gttttaataa gtagcggagt gcaaatcaca caaaatggca aaaaatcctc caaataaagc
     3601 ttttgcctca aagaaagcaa ggaacaaaaa ataaaggtta cgctcattaa aaaccatagt
     3661 aaactttttt gctctttaaa agttaaacga taaactacat aaaaaaaata aataaaaaca
     3721 agcggcgaaa aacaagcggc gaaaattccc aaagtatcca aaaaatatcc tcttggacgc
     3781 ccacctgtat caaaaccata aaagcttatg ctcaaaccaa aaagtacaag ggccaaagtc
     3841 aataaaaaag aatttctttt ataaattcca aaaaagaaaa aggttaaaaa taaaatatta
     3901 aaagacttat ctacaaataa agctaaaatc aaaagcggat aaaaaatcca ttttttttca
     3961 tattcatacg cacaaattat agctagcgtt aaaaaaatca ctatagaggc ttcatttacc
     4021 aacaaagcac ttgcaacagt tcctggcaac aagacaaaaa gtagaagagc taaaagacta
     4081 tcaaaatgag tttttgtata ttttaaagcc aaaatataaa gtaaaataca acttaaaaaa
     4141 tgaaaaaata aaataggaat tcttaaacca aagtcatttt gtccaaaaat aaaagttcca
     4201 aaatgtgtaa gataataaag caaactatga ttcaaaaaaa gaaaacttcc tttttcttca
     4261 aaataaattt tagcctcatc agcactaatg ctaagggttg aaattccata aagcaaagca
     4321 agtaaatcaa aagcaagtaa aagaataata agcttataat ttttgatttt ttccataaat
     4381 ttgattttac aaaattaaac ttaaaatatc aactgatgta aatttcaaaa aataatccca
     4441 tgcctaatgt ataaaataaa aatattttta taaaaagcca accttgtaac accccatttt
     4501 atttctttta taacttttga atgaattcat aaattttgac ttgtttttga catttctttc
     4561 cttaattttt gtaaaattat agtatatttt taaaaatttt attaatacat tatattttac
     4621 cttatttaat cataatacca aataaaaagg cgaaaatgca aacaattgat caaatttttc
     4681 aagcacaaat tgaaattaaa aaatctactt ttttatccta tctttgccct tttaaagatt
     4741 ttaaaaattt gcttgtaaat ttaaaaaaag aacaccccaa agccgttcat tttgtttatg
     4801 cttatcgaac tttaaatgaa tacaatcaaa tcatagaaga taaaagtgat gatggcgagc
     4861 ctaagggcac ttcaggcata ccttctttaa atgttttaag agggtatgat cttgtcaaca
     4921 ctgcagtcat cactgtaaga tattttggtg gcaccaaact tgggacagga ggacttgtaa
     4981 gagcttatag tgacgcggca aatgcagcga ttaacaatgc ctccttgcta acttttgaat
     5041 ttaaaaaaaa tatcaaaatt gccatagatt ttaaaaatct caatcgcttc gaacattttt
     5101 taagaactca ctctttggaa tttgagcgag actttaaaaa tgaaaaagtg attttaagct
     5161 taaatttaaa cgaagaggaa gagcaaaagt ttgaaatctt ttgcgcccaa tttacacctt
     5221 ttgaaataga gaaattataa tctatcttaa agcctcgttt gaggctttaa tttaaatcgc
     5281 gttaagtaaa tcacctaaaa gactactgtc tttattttgt ccatttgcat tttgatttaa
     5341 aagatcatta tgcacactcg cactttgagc ttttaaagaa agttcgccct cgttttgcct
     5401 aaaacgataa gcatacatgc ttgacatttg tgcgtattga gaggaattag aatttgaact
     5461 ttgggtattg ttttgtaaat tttcttccgt actagaaata cccgaatttt cctctaattt
     5521 acttaatata tccataaaat cagaatcaga agtcgaagaa taatcttcta cttgcttatc
     5581 cacctgctta tactgaccac taatcgcatc atattcatat gagctaatag ttttataact
     5641 tacctgcata gctttctcct ttcaaaatat gcaaaaacta tacaagcaaa aagtgttcct
     5701 taatcaccat gagttggtaa atgctccaca tcaagttcat tatctcttat aaattcttct
     5761 tttgctctct tgcaattttc atcgcgtatt ttacgatatt cattgcgtat ggtgatttct
     5821 ttgtcgctta aaggtctatc ttctaaaaaa ctgatatgaa aataagtatc atcgcttttt
     5881 gaataagtat tgtaaaaatc tatataatca aaataatcct taccattgtc aaattccact
     5941 acttcttcta tataaatagt aggtccaaag cctttatgat tttgggtaaa atgtccaaag
     6001 cctgcgctat actgaattct aaatttagcc atcattttct cctaaaaatt cttggtaagt
     6061 tccacgaaaa tcagtcagtt ctccatcttt taagtgccaa atac
//
LOCUS       DARAII010000105         5981 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.105, whole genome shotgun sequence.
ACCESSION   DARAII010000105 DARAII010000000
VERSION     DARAII010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5981
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.105"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..2243)
                     /locus_tag="SB143_001582"
     CDS             complement(<1..2243)
                     /locus_tag="SB143_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(1701..1703),aa:Sec)
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEF9750099.1"
                     /translation="MSSMNETIKLNRRSFLKMAALSSLASPLLARSETLREANADELK
                     EAYEGSQKIKSVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLIQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDK
                     VDNAGTSLKALVVMGNGITSTAQQAKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVIDPLYESKEDQEILFELAKKLGFYEDFTKTL
                     RDENGKIVWPENATREIASAVRSIGLNGWSPERLKKHTLNWDKFDEVTLEGKDELAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGENLLAKNAPINSPID
                     TGYPQITKDNIEKVLGITLSAQEKEKMGAIWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKD"
     gene            complement(2243..2434)
                     /locus_tag="SB143_001583"
     CDS             complement(2243..2434)
                     /locus_tag="SB143_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEF9750100.1"
                     /translation="MKNRREFLKKSAIALGTASLLGGASVAFGQDEERKDLVRGKSKK
                     KEVLYQRSANWEKYYMRAE"
     gene            complement(2409..3110)
                     /locus_tag="SB143_001584"
     CDS             complement(2409..3110)
                     /locus_tag="SB143_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEF9750101.1"
                     /translation="MDLEKLRLARSLYYQCLGELFVFSFSENRLCNLKAYLEAMQEGL
                     FDESLRTSFEILLRNLQDVQDLQAFYKEYDELFLALKNTIPMTFSYIEEGFENSKALL
                     NVRQILAKSTIRRNEKIFKEAEDSVGFCFVLMSEFLKNKEDELAKALFEKVINQSIDE
                     FLMLIFSNSKAKLYKEIANIAAQFIEFERYCFELEKPTIKPSKKVQNDLSRSEFLRRE
                     ANKQRRSREKSQGIS"
     gene            complement(3442..4590)
                     /gene="nspC"
                     /locus_tag="SB143_001585"
     CDS             complement(3442..4590)
                     /gene="nspC"
                     /locus_tag="SB143_001585"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEF9750102.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKAFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFKEELKRGDRV
                     VFLDQIHYSIVKNTTFNGIRLPNLMLLNSKNELEMVREFSYKDYALRN"
     gene            4714..>5981
                     /gene="cueO"
                     /locus_tag="SB143_001586"
     CDS             4714..>5981
                     /gene="cueO"
                     /locus_tag="SB143_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEF9750103.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SEDELKTALASMFLINGKSYNLKRVDLNSK"
BASE COUNT         1973 a         1155 c          799 g         2054 t
ORIGIN      
        1 tgatctttaa atgtccaaac cacagcccta gctttagcat ttccataagg cactatacct
       61 ttttctatac atttagtcgc tatgatatta ctatcatcat aagaccaaat tgcacccatt
      121 ttttcttttt cttgggcact taaagtaata cctaaaactt tttctatatt atctttagta
      181 atttgtggat agcctgtatc tataggtgaa tttatcggag catttttagc caataaattt
      241 tcaccctcat actcaagtcc gaaattattt ctaaatccca taccaccttt tgctacttcg
      301 atatcggtat tataaagcac aggagatcct ggatgtttat cactccaaca aggccaagga
      361 agtccgtagt attcacccgc taattcgtct ttgccttcta aagtcacctc atcaaattta
      421 tcccaattta aagtatgttt tttaagtctt tcagggctcc aaccattaag tcctatactt
      481 ctaactgcac ttgcaatttc tctagtagca ttttcaggcc aaacaatctt gccattttca
      541 tcgcgtaagg ttttagtaaa gtcttcataa aaacctaatt ttttggcaag ctcaaataaa
      601 atttcttgat cttctttgct ttcataaagt ggatctataa ccttaaatct ccattgtccg
      661 ctacgatttg tagctgttac gcttccactt gtttcaaact gcgttgcagc aggtaaaaga
      721 taaattccat cttttctttc tgcaataatt cctgcttcat tgacaaaagg atcagctaaa
      781 accaaaagtt ctaaagcttc caaaccttct ttaactttag cttgctgtgc agtcgaagtg
      841 ataccatttc ccattaccac caaagctttc aaagacgttc ctgcattatc cactttatca
      901 tttccatctt tgccatttaa ggctgcagcc caccatctag caagtgaaag tccagtttta
      961 tgcatccaat ctttgcttac aaaatttcct aaaagccact cataatcaac gccccaaatt
     1021 ttggcatagt atctccaagt cgcttcattt aaaggataat aaccaggtaa attttcactc
     1081 aaacaagcca tatccgaagc accttgaaca ttatcgtgtc cgcgtaaaat atttaccccg
     1141 ccgccgaatt tacctatatt tcctaaaacc atttgtacta taggtgctaa acgcgtattt
     1201 gaagttccta cggtgtgctg tgttaagccc atagcccaaa tcaatgtagt tggtttattt
     1261 ttagctactt catgagtgat ttgaatgagg agttctttag aaattcctgt tacattttct
     1321 acttcttcag cagtccattt tgcagcttct tcacgaattt tatcgatacc aaaaactctt
     1381 tcatcaaggt attttgtatc ttctaaacct tcatcaaaaa tgatttttaa cattccatac
     1441 atgaaagcaa tatcagtacc tggacgaatt cttgcataaa tatctgcttt tgctgcactc
     1501 tttgtaaatc taggatctac aacgataagc ttagcacctt tttcttttgc ttttaagaag
     1561 tgtctaaaac ctacagggtg atttaccgct ggatttgctc caatgataat gatacattta
     1621 cttctttgga tgtctccaag atggtttgtc atagcgccat aaccaaatgt attcgccaca
     1681 ccggcgactg ttgcgctgtg tcaaattcta gcttgatgat ctacattatt ggttccaaaa
     1741 aatgctgcga attttcttat ataataagct tgttcattgt ttagttttgc agaacctaaa
     1801 aacataacgc tttctggatt ttctttacga taagctgcta atttttctcc gatttcactt
     1861 aaagcttgtt cataacttat gcgtttccat tctccatttt cttttttcat agggtatttt
     1921 aaacgcacat gagaacgcac catatcgatc atatcagatc ccttgcagca atgtccacct
     1981 gaactcacag gatgatcttg agcgatttct tgacgcaccc aaacaccatt ttgcacttct
     2041 gcaataattc cgcagcctac agaacatgcg gtacatacac tcttaatctt ttgacttcct
     2101 tcataagctt cttttaattc atccgcattt gcttctctta aagtttcgct tctagctagc
     2161 aacggacttg ccaaacttga aagcgcggcc attttaagaa aagaacggcg attaagcttg
     2221 atagtttcat tcatacttga cattattcag ccctcatata atatttttcc caattagcac
     2281 ttctttgata aagcacttcc ttctttttgc ttttgcctct aacaagatcc tttctttctt
     2341 catcttgccc aaaagctaca cttgcaccgc ctaaaagact tgcagtaccc aaagcaatag
     2401 cagatttttt aagaaattcc ctgcgatttt tcacgagatc tcctttgttt atttgcttct
     2461 cttcttaaaa attcagaacg agataaatca ttttgaactt tcttagaagg ttttatagta
     2521 ggtttttcaa gttcaaaaca atatctttca aattctataa actgcgcagc aatatttgct
     2581 atttctttat aaagcttcgc ttttgaattt gaaaaaataa gcattaaaaa ttcatcaatg
     2641 ctttgattga tgactttttc aaacaatgcc ttagcaagtt catcttcctt attttttaga
     2701 aattcactca ttaaaacaaa acaaaatcct acactatctt cagcttcttt aaaaattttt
     2761 tcattgcgac ggattgtgct tttagctaaa atctgcctta cattaagcaa tgcttttgaa
     2821 ttttcaaagc cttcttctat gtaagaaaaa gtcataggaa tagtgttttt aagtgctaaa
     2881 aaaagctcat cgtattcttt ataaaatgct tgaagatctt gtacatcttg taaattacga
     2941 agtaaaattt caaagcttgt tcttaaactt tcatcaaata aaccctcttg catagcttct
     3001 aaataagctt ttaagttaca caatctattt tcagaaaatg aaaaaacgaa aagttctcct
     3061 aagcactgat aataaagact tctagctaat cttagttttt ctaaatccat ttttaactca
     3121 ttcaaatttt tgaagatttg ccgttaaata atttgcaaaa taatattatg caaattacac
     3181 ctaattttcc ttcttaatcc ttatttttga ctgatttatc ttaatatgat ttgttttaaa
     3241 ataaactgaa attttcttaa aaatctgcct aatctgaaaa aatagaattt agctttaaaa
     3301 gcctataaaa tagtatttta atgaggtttt ttaaaaaaag ttgcataaaa tatttaaacc
     3361 taaaaaacaa aactttcatt ttgtcattta aaaaatattt tatgctaaaa agaaataata
     3421 aaattattct tccaaaaaat tttaatttct tagagcgtaa tccttgtaag aaaattctct
     3481 taccatttca agctcatttt tggaatttaa aagcattaaa tttggaagtc ttatgccatt
     3541 aaaagttgta tttttcacta tagaataatg aatttgatct aaaaatacca ccctatctcc
     3601 gcgttttaat tcttctttaa aagcgtactc tcccatcaca tctccagcta aacaagtatt
     3661 tccagtaagc aaataggaaa attcgctttc ttttaagtct gaaatttttt cattttctct
     3721 tgtggctaaa attctagcat ttaaaacttc acttgtataa ggcatgatga tagtatctgg
     3781 catatgtgct tcgcttgaag tatctaaaat agcaatttgt ttttcatttt ctatgatatc
     3841 tactacacta gccaccaaat ttcctgtttg ccaacccacc gcttcgcctg gttcaagata
     3901 aacttgcaca ccgtatttat cactgaaatt tttacacaaa gcaataagct tttcaacatc
     3961 atagcctttt ttagtgatgt gatgtcctcc tccaaaattc acccatttca tttgccctat
     4021 ccatttgcca aatttctctt caaaagcctt taaaactgct tctaaagcat cagcactttc
     4081 ttcacaaagt gcgtgaaaat gaagtccttc tatagcattt aaatccacat tttcaaaatc
     4141 tttagcacga attccaagtc ttgagtatct tccacaagga ttgtaaagtt cttttggggc
     4201 tagagaaaat tcaacattac aacgaagacc taaggaattt ttttgtgttt tagcttgaaa
     4261 tttatgaaat tgagctaaag agttaaacac tatatgatga gataagctgg ctatttcacc
     4321 tatttcatct tctttaaaag caggcgaata agtatgaatt tctttatcca tgtattcttt
     4381 agcaaatttt gcttcccaaa gtccgctaca agtacaacct tttaggtatt ctccaacaat
     4441 tttcatcgct cctgaaaaag caaaaccttt taaagctaaa agcactttag caccactttt
     4501 ttcaccaaca cttgctaaaa gctcacaatt ttttcttaat ttatcttctt ctaaaatata
     4561 agctggagtt tgaatttttt cataaaacat tatttttcct tgattaaatt gctaaaatca
     4621 taacaaaatt aaaccaaatt ttcaaaataa atatttacta aagttaaaaa aataatgact
     4681 ataatacaaa aaatcaagca aaaggaaaaa ctaatgaata gaagaaattt tttaaaattt
     4741 aatgcactta ctctagcaag tatgggtgta gcctatgcaa atcctatgca cgatatgcac
     4801 tccatgcata aaaatcattc tataaatcat gacttagata cttcttttat aaactttgct
     4861 ccaaaaaatt taaagctttt agatccaaaa caattccccc aaggagaaat tttaaaagcc
     4921 ttgcctttac tcaaaaatga aagtaaagaa aaaaatattt ttcgtgctac cctagaaatc
     4981 aaagaaaatc atatagagct tatcaaaggt aaaaaaacct tattttatac ttacaatggc
     5041 ctcgtgcctg ctccaaaaat agaagttttt gaaggagata aacttgaaat tttagtcaaa
     5101 aacaaactca aagaagctac aactatacat tggcatggcg ttcctgtgcc acctgatcaa
     5161 gatggaagcc cacatgatcc tatcttagca ggagaagaaa gaatatatcg ttttgaaatt
     5221 cctcaagata gcgcaggaac ttactggtat catccacatc ctcattatac ggcttctaaa
     5281 caagttttta tgggtttagc aggggctttt gtgatcaaag caaaaaaaga tgctttaagt
     5341 catttaaaag aaaaagattt gatgattagc gatttgcgtc ttgatgaaaa cgctcaaatt
     5401 ccaaacaaca acctaaatga ttggctaaat ggtagagaag gagaatttgt actcatcaat
     5461 ggacaattta aacctaaaat caaactcgcc acaaacgaac gcatacgcat ttataatgct
     5521 actgcagcaa gatatttaaa tttacgcata caaggagcta agtttatact tgttggtact
     5581 gatggtggac ttatagaaaa agctatttat aaagaagaac ttttcttaag tcctgcttct
     5641 cgtgtagaag ttttaatcga cgctccaaaa gatgggaatt ttaagctaga aagtgcttat
     5701 tatgataggg acaaaatgat ggtaaaagaa gaatctaata ccctattttt agctagtatt
     5761 agcctaaaaa aagaaaaatt agaacttcca aaaaatttaa aaattttcaa acctttagaa
     5821 gaacctaagg aatttaaaga aataatcatg agtgaagatc acatgcaaat gcatggaatg
     5881 atgggcaaaa gcgaagatga actaaaaact gctcttgcat ctatgttttt aataaatggc
     5941 aaaagttata atttaaaacg cgttgattta aattctaaaa t
//
LOCUS       DARAII010000106         5935 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.106, whole genome shotgun sequence.
ACCESSION   DARAII010000106 DARAII010000000
VERSION     DARAII010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5935
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.106"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..723
                     /gene="ilvC"
                     /locus_tag="SB143_001587"
     CDS             <1..723
                     /gene="ilvC"
                     /locus_tag="SB143_001587"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEF9750104.1"
                     /translation="EGKAIAFAHGFNIHYGQIVAPRGIDVIMIAPKAPGHTVRNEFAI
                     GGGTPCLIAIHQDESKNAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCG
                     GLSALIQAGFETLVEAGYEPEMAYFECLHEIKLIVDLIYQGGIADMRYSISNTAEYGD
                     YITGPKIITEETKKAMKGVLKDIQDGNFAKDFILERRAGFARMHAERKNMNNSLIEQT
                     GRNLRAMMPWISAKKLIDKDKN"
     gene            726..1778
                     /locus_tag="SB143_001588"
     CDS             726..1778
                     /locus_tag="SB143_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEF9750105.1"
                     /translation="MSKKLIQIKRYLIIAILFLICVILFLGILIQYQDSQNALKFAQN
                     SSKNITIEPKQENISNENHLGIFKEIPYKDENDNFQENNQSILEEQIKDLNLSSIIDG
                     NLSKIDENLSLVVEQNLSKEENLTKDMNLSKTKQARLAIIIDDMANISQVRALQALKL
                     KLIPSFFPPDKNHIDTPKLALKFDFYMVHLPLAAMNYTKPELDTLNPSDSEKRIFKKI
                     QQVKKDFKDLKFINNHTGSLFTSDEKAMKKLYKAFEKEELIFVDSKTIASSKAPKVAK
                     ALGQIYIQRDVFLDNRDDVAYIKNQLIEAVRLAKQKGFAIAIGHPRKNTFKALEQSKD
                     LLKSVELVYLSEIYAK"
     gene            1768..2538
                     /locus_tag="SB143_001589"
     CDS             1768..2538
                     /locus_tag="SB143_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEF9750106.1"
                     /translation="MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRR
                     MSTYTKNCVFELSNLLKNSKISVVSGGALGVDISASMAAMPSTIGVFANGLDEIYPRS
                     NEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
                     RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDF
                     CRQGVSVDEATQIYGEKVYEYELEGKISIEGLFIRVLV"
     gene            2535..2915
                     /gene="ruvX"
                     /locus_tag="SB143_001590"
     CDS             2535..2915
                     /gene="ruvX"
                     /locus_tag="SB143_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEF9750107.1"
                     /translation="MRALALDVGLKRIGVALCIDKIAIPLEGIIRKNRNQAANEVKNL
                     LQIHDISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEIRFVDESGTSKEALGYGVA
                     NTRKKDAKLDSLAALIMIKDYFGI"
     gene            2905..3780
                     /locus_tag="SB143_001591"
     CDS             2905..3780
                     /locus_tag="SB143_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEF9750108.1"
                     /translation="MEYNLASIYNDKELENLKNSFKLPKKICCFINRLKCDNLTLERE
                     FQDLNLEYEKLNEYCYLFKACDKSILSSMQAFNEFKFYIQNYASYLCALNLDVKAGQS
                     VLDMCAAPGGKSINLANFMQNEGYLACNEASKDRFFTLQKNLKNYGVKARVFMKDGKN
                     IGNLCPLKFDKILLDAPCSTLAKMGLELEKSSKEIKNIAKLQKKLLHSALKALKVGGE
                     LVYSTCTFTKEENEEVIENALKSDFDIELLDINLENALAKNGQSSEFEAISKCKRILP
                     CEEYDGFFIAKLRKN"
     gene            complement(4003..4503)
                     /gene="msrA"
                     /locus_tag="SB143_001592"
     CDS             complement(4003..4503)
                     /gene="msrA"
                     /locus_tag="SB143_001592"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEF9750109.1"
                     /translation="MKNIILGGGCFWCVEAAFENFEGIIHTEVGYTGGNDNPSYESVC
                     NGDGNIEVVKIIYNEAKISLEQILSLFFKIHDPTSFDKQGADIGIQYRSAIFYENQSD
                     KNTIEDFIKKEQVNFSLPIVTQIYKLQKYYKAEDYHQHYFIHNPNQSYCRFVIAPKLE
                     KIRNYE"
     gene            complement(4551..5069)
                     /gene="ppa"
                     /locus_tag="SB143_001593"
     CDS             complement(4551..5069)
                     /gene="ppa"
                     /locus_tag="SB143_001593"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEF9750110.1"
                     /translation="MDLSKIKIGDIPNKINAVIEIPYGSSIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     VEILEKAIKNYK"
     gene            complement(5079..5654)
                     /locus_tag="SB143_001594"
     CDS             complement(5079..5654)
                     /locus_tag="SB143_001594"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEF9750111.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADADVTHYSTGDLLRAEVAS
                     GSELGKTIDGFISKGNLVPLDVVVNTIVSALKAAPTKTVIIDGYPRSVEQMVEFDKVL
                     SEQNEICLKGVIEVRVSEQVAKDRVLGRSRGADDNEEVFYNRMKVYTEPLEEIISFYQ
                     KKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            complement(5651..>5935)
                     /gene="aspS"
                     /locus_tag="SB143_001595"
     CDS             complement(5651..>5935)
                     /gene="aspS"
                     /locus_tag="SB143_001595"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="catalyzes a two-step reaction, first charging an
                     aspartate molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA; contains discriminating
                     and non-discriminating subtypes; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEF9750112.1"
                     /translation="IQQKVFKLLNIDEEQQKEKFGFLLDALSFGAPPHGGIAIGLDRL
                     IMLVTGANSIREVIAFPKTQRAQCLMTDAPSAASNEAMRELGIKLRENIK"
BASE COUNT         2053 a          884 c         1029 g         1969 t
ORIGIN      
        1 gaaggcaagg ctatagcttt tgcacatggt tttaatatac attatggtca aatcgtagct
       61 cctagaggta tagatgtaat catgatagcc ccaaaagcac ctgggcatac agtaagaaat
      121 gaatttgcta taggtggtgg aactccttgt ttaatagcga ttcatcaaga tgagagcaaa
      181 aatgctaaaa atttagcttt aagctatgca agtgctattg gtggaggtcg tacaggtatc
      241 atagaaacga cttttaaagc tgaaacagaa acagatcttt ttggtgagca agctgtgctt
      301 tgtggtgggc ttagtgcttt gatccaagca ggatttgaaa ctttggttga agcaggatat
      361 gagcctgaaa tggcttattt tgagtgttta catgagataa aacttatcgt agatttgatc
      421 tatcaaggtg gaattgcaga tatgcgttat tctatttcaa acactgcaga atatggcgat
      481 tatatcacag gaccaaaaat tatcactgaa gaaactaaaa aagctatgaa gggcgtttta
      541 aaagatatac aagatggaaa ttttgctaaa gattttattt tagaacgccg tgcaggtttt
      601 gcaagaatgc atgcagaacg caaaaatatg aacaattctt taatcgagca aacaggccgc
      661 aacttacgcg caatgatgcc ttggattagt gctaaaaaat taatcgataa agataagaac
      721 taaaattgtc aaaaaaactg attcaaatta agcgttattt aatcatcgct atactttttt
      781 taatatgcgt gattttattt ttgggaattt tgattcaata tcaagattct caaaatgcat
      841 taaaattcgc tcaaaattct agtaaaaata taacaataga acccaagcaa gaaaatatat
      901 ccaatgaaaa tcatttgggt atttttaaag aaattcctta taaagacgaa aatgataatt
      961 ttcaagaaaa caatcaaagc attttagaag agcaaataaa agatttaaat ttaagtagta
     1021 ttatagatgg aaatttaagc aaaatagatg aaaatttaag ccttgtagta gaacaaaatt
     1081 taagcaagga agaaaatctt acaaaagata tgaatttaag taaaacaaaa caagcccgcc
     1141 ttgctatcat tatagatgat atggcgaaca taagtcaagt tagggcttta caggcattaa
     1201 aactcaaact tatcccttca ttttttccac ccgataaaaa tcatatcgat accccaaaac
     1261 ttgctctaaa atttgatttt tatatggtgc atttgccttt agcggcgatg aattatacta
     1321 agcctgagct tgatacctta aatccaagcg atagtgaaaa gcgtattttt aaaaaaatac
     1381 aacaagtgaa aaaagatttt aaagatttaa aatttatcaa caatcataca ggaagcttat
     1441 ttacaagtga tgaaaaagca atgaaaaaac tttataaagc ctttgaaaaa gaagaattga
     1501 tttttgtaga ttctaaaacc atagcaagct ctaaagcgcc taaagtggct aaggctttgg
     1561 ggcaaattta tatacaaaga gatgtgtttt tagacaatcg cgatgatgtt gcttatatca
     1621 aaaatcaact catagaagcg gtaaggcttg ctaagcaaaa aggctttgcg atagctatag
     1681 gacatcctag aaaaaatact tttaaagcct tagagcaaag caaagatttg cttaaaagtg
     1741 ttgagttagt gtatttaagt gagatttatg caaagtgaac taccaagcgc ttatctagag
     1801 ctttttaaag agttgaaaaa tcctcctaaa aaactttatt ataaaggaaa tttaaaactc
     1861 ttagaacaaa gaaagatagc cattataggc tctaggcgta tgagcactta cactaaaaat
     1921 tgcgtttttg agctttcaaa tttgcttaaa aattcaaaga taagtgttgt aagcggaggt
     1981 gctttgggtg ttgatatcag tgcaagtatg gcggctatgc caagcactat aggggttttt
     2041 gccaatggtc ttgatgaaat ttatcctaga agcaatgaaa aaattataaa acaaatttat
     2101 gaaaatgctt tggctttaag cgaaaacgaa tcctactata agcctaagcc ttatgatttt
     2161 ttacttagaa ataggctgat tgtcgctttg agtgaagccg ttgttgttgc gcaagcagat
     2221 ttgcaaagcg gctccatgca aagtgcaaga cttgctttgg agcttaataa acctttatat
     2281 gttttacccc aacgtaaaaa tgaaagcgat gggacaaatt tactcttaca agaaaaaaat
     2341 gcgaatttgc ttttagattt taaagaattt gcaagttgtt ttggggttat agaagaagaa
     2401 aaggatgaat ttttagactt ttgtagacag ggcgtaagcg tggatgaggc aactcaaatt
     2461 tatggagaaa aagtctatga gtacgagctt gaaggaaaaa tttccataga aggtcttttt
     2521 ataagggttt tggtatgaga gctttggcct tagatgtggg tttaaagcgt ataggcgtgg
     2581 cgctttgtat agataaaatc gccattcctt tagaaggtat aatcagaaaa aaccgcaacc
     2641 aagctgcaaa tgaagttaaa aatttacttc aaattcatga tatttcttta ttgattgtag
     2701 gtattcctaa gggaggatcg agcgaagaag aaatgacaag gcgtatcaag cattttgtat
     2761 ctttgcttga attcgataaa gaaattcgct ttgtagatga aagcggaaca agtaaagaag
     2821 ctttaggata tggtgtggct aatacacgca aaaaagatgc caagctagac tctttagcag
     2881 ctttaatcat gataaaggat tattttggaa tataatctag ccagtattta taatgataaa
     2941 gaacttgaaa atcttaaaaa ttcttttaaa ttgcccaaaa aaatatgctg ttttataaat
     3001 cgcctaaaat gtgataattt aacacttgaa agagaatttc aagatttgaa tttagagtat
     3061 gaaaagctta atgagtactg ctatcttttt aaggcttgtg ataaaagtat tttaagctct
     3121 atgcaagctt ttaatgaatt taaattttat atacaaaatt atgcttctta tttgtgcgct
     3181 ttaaatttgg atgtaaaggc agggcagagt gttttagata tgtgtgcagc acctggtgga
     3241 aaaagtatca atcttgctaa ttttatgcaa aatgaaggtt atctagcttg caatgaagca
     3301 agtaaagata ggttttttac cttgcaaaag aatttgaaaa attatggagt aaaagctcga
     3361 gtttttatga aagatggtaa aaatatagga aatttatgcc ctttaaaatt tgataaaatt
     3421 ttacttgatg caccttgttc tactttagca aaaatgggtt tagaattaga aaaaagttct
     3481 aaagagatta aaaacatagc taaacttcaa aaaaaacttt tacattctgc actcaaggct
     3541 ttaaaagtag gtggagagct tgtttatagt acttgcactt ttaccaaaga ggaaaatgaa
     3601 gaagtgatag aaaatgcttt aaaaagtgat tttgatatag agcttttgga tataaattta
     3661 gaaaatgctt tggcaaaaaa tgggcaaagt agcgaatttg aagcgatttc taaatgtaaa
     3721 cgcattttac cttgtgaaga atacgacgga ttttttattg ctaaattaag gaaaaattga
     3781 ttttaattct ttaaggctaa gttcgcatag aagctaaaat ttcattatat attaaaatta
     3841 ttcacatctt caagtaaatt cacaaaaaaa cttaaaaaac aataaatgtt tttttggaaa
     3901 atttaaaact taaagtccta tttttagggc tttgaaaaga aaatcacatc gtgaaaagcc
     3961 tgtgaataaa aaataaattt tttaaaactt aaaaagataa tttcactcgt aatttctaat
     4021 tttttctagc ttaggtgcta taacaaaacg acaatagctt tgattgggat tgtgtataaa
     4081 ataatgctga tgataatctt ctgctttgta atatttttga agtttataaa tttgtgtgac
     4141 aatcggaagt gaaaaattaa cttgttcttt ttttataaaa tcttctatgg tatttttatc
     4201 gctttggttt tcataaaaaa ttgccgaacg atattgaatt cctatatcag ctccttgttt
     4261 gtcaaagcta gttggatcat gaattttaaa aaataagctt aagatttgtt ctaaggaaat
     4321 tttggcttca ttgtaaatga ttttaaccac ttctatattg ccatcgccat tacaaacact
     4381 ttcatagcta ggattgtcat ttccacctgt gtagcctact tcagtgtgta taatgccttc
     4441 aaaattttca aaagcagctt ctacacacca aaaacatcca ccacctaaaa tgatattttt
     4501 cataaagaat ttccttaaag atttagccta taaaaggcta aataaagaat ttatttgtag
     4561 tttttaatcg ctttttctaa aatttcaaca gcagcttttt catctttgaa atcttgcact
     4621 tttacccatt tgttaggttc taagatttta taagtttcaa agaaattttt gattttattt
     4681 agagttgctt gtggtaaatc agtataggtt ttgatattgt catatcttgc gtcgatttta
     4741 gaatttggca cagcaagaag tttttcatcc attccacttt catcttccat gattaaaaca
     4801 ccgattaaac gacatggaat aactgcgcct gcttggatag ggtattcatt taagactaag
     4861 atatccacag gatcgccatc atcagctaag gtatttgcga taaaaccata atttgctgga
     4921 taaaacatcg cgctagccat aacgcgatcc accatgatcg caccgctatc tttatcgatt
     4981 tcgtatttaa tacttgagcc gtatggaatt tcaattacag cattgatttt gtttggaata
     5041 tctccgattt tgattttgct taagtccatt ttttatcctt atatactttg aattttttta
     5101 atcaactctt tcatatcagc aacgataggt tcgatagtgc gttctccatc gatgatgaaa
     5161 tgaagttttt tcttttggta aaaagaaatg atttcttcta gtggctcggt atacactttc
     5221 attctattat aaaacacttc ttcgttgtca tctgcgccac gacttcttcc taaaacgcga
     5281 tctttagcta cttgttcact cactcttact tcgattacgc cttttagaca aatttcattt
     5341 tgctcgctta aaactttatc aaattctacc atttgctcca cacttcttgg atagccatcg
     5401 ataataactg tttttgtagg agcagctttt agcgctgaaa ctatagtatt tacaactaca
     5461 tctaatggaa ctaaatttcc cttagaaata aaaccatcta tggttttgcc aagttcactt
     5521 ccgcttgcta cttccgctct taaaagatct cctgtagaat aatgagtaac atccgcatca
     5581 gcttgtgcaa tcaaactagc atctgtagtt tttccgcttc ctggtgcacc tataattaaa
     5641 aataattctt tcattttata ttctccctta atttgattcc taattctctc atggcttcat
     5701 tgctagcagc tgaaggagca tccgtcatca agcattgtgc tctttgagtt tttgggaatg
     5761 ctataacttc tcttatgcta tttgctcctg ttactagcat gataagtcta tcaagcccta
     5821 tagcaatacc tccatgtggt ggagcgccaa aacttagagc atcaagtaaa aatccaaatt
     5881 tttctttttg ctgttcttca tcgatattga gtaatttaaa aactttttgc tggat
//
LOCUS       DARAII010000107         5890 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.107, whole genome shotgun sequence.
ACCESSION   DARAII010000107 DARAII010000000
VERSION     DARAII010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5890
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.107"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..831
                     /gene="ilvA"
                     /locus_tag="SB143_001596"
     CDS             <1..831
                     /gene="ilvA"
                     /locus_tag="SB143_001596"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEF9750113.1"
                     /translation="YAFATNYAKENGLSFIHPFEDELVMAGQGTLMLEMLDDVSDLDT
                     IIAPVGGGGLISGIASAAKQINPNIKIIAVGAKGAPAMHDSFKAKEVKNSKSVRTIAD
                     GIAVRDANPINLGIILECVDEFVQVDDEEIANAVLFLLEKHKIIVEGAGAASVAALLH
                     QKIDIKDSKKIGVVLSGGNIDVQMLNIIIEKGLFKAYRKMQINVTLIDKPGALLNLTD
                     SLKSANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEVRNILKDKGFDFYETF
                     "
     gene            complement(828..1553)
                     /gene="truA"
                     /locus_tag="SB143_001597"
     CDS             complement(828..1553)
                     /gene="truA"
                     /locus_tag="SB143_001597"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEF9750114.1"
                     /translation="MMKLKIIFSYDGSKFLGSATQPHKKSVQDALQDALSHLGIFSSV
                     LMASRTDKGVHASYAVACVECGEHFRDLNYLKKQINKFSHPFIHVKNLKIMPSNFEVR
                     YDVKSREYRYIFYHGVYNPFLASYVHFYPFIDVLKADLVLQNFVGIKDFKFFCKSGGD
                     NKTTIREIFLAKAYSYKDFTIFRFKANGFLRAQIRLMVASVLKVLENKMSIEELKEQI
                     EAKKQYNHFLAPPCGLYLSRISY"
     gene            complement(1550..2575)
                     /locus_tag="SB143_001598"
     CDS             complement(1550..2575)
                     /locus_tag="SB143_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEF9750115.1"
                     /translation="MKLALRYVLNQFLSTNLSIFFVLFTIVSMVFFIQLAKLTSSIEI
                     NFADLLKLYGFMLPRILIFTLPIAFFIALTLALFRLSRENESIVLFTLGFSPKILAKF
                     FLKIAALVSALMLIIALVMIPIVFELQDNFVNFKKTQVKFNYKTGEFGQRFLEWMIFI
                     EKQESDRYENIIMYHPKRNIEDKEQLIIAKEATAQRNEDSFAFKLSNGKMYNFENGQT
                     LFIGNFDKLIVNTQFNDQNLQTKKFYEYWNDLNTNPKRAKEFVIYVTIALFPLASTLF
                     ALSFGIVTYRYEKGFIYFGMFGVIAVYFGLLSSFSQPPILACIGIFALSFIASIVCFK
                     KMILSRY"
     gene            complement(2572..3351)
                     /locus_tag="SB143_001599"
     CDS             complement(2572..3351)
                     /locus_tag="SB143_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEF9750116.1"
                     /translation="MENNPIAFLILAILGASLGSFCMSLTMRFCENKPLLSLRSYCFS
                     CYQKLKPLELIPIFSYIFLRFKCKTCHIKIPFSVFLAEVLGMIFAWIAYLLSQNIGEF
                     IHLLIFLFVLFALSCIDLKFQAVPQKLLWLIFFIAFSFAFNSNEFAYFFIFENFQNGF
                     MVQAFIFAGFLFLLKNFIAFLKNFRTKDIQENLGDADIIILASMAGVFGFKSAFIILF
                     LASLLSLPFFIHNKNTKLAFLPFINAAFVIYLIYLIVQELI"
     gene            complement(3341..4009)
                     /gene="uppS"
                     /locus_tag="SB143_001600"
     CDS             complement(3341..4009)
                     /gene="uppS"
                     /locus_tag="SB143_001600"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEF9750117.1"
                     /translation="MNELKHLAVVMDGNRRWAKAKGFLAKLGYSQGVKTMQKLMEACV
                     EEGISNLSLFAFSTENWNRPQDEIEFIFELLDRCLDEALKEFEKNNVRLRAIGDLSRL
                     DTHLQEKIALVEEKTKHCDLLCVNLAISYGAKDEIVRSVKRLIEKGLEINEKNISDNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCAYAEIYFSETLFPSLTKREFKKIIKEFRKRER
                     TFGK"
     gene            complement(4012..4629)
                     /locus_tag="SB143_001601"
     CDS             complement(4012..4629)
                     /locus_tag="SB143_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750118.1"
                     /translation="MNMINSTLPIQMKVLAKSGYAHYTLLLNHRKIQTKSMIELEIGA
                     EYLAELYIEKGGAIAFKHLSKRPDFHPFEEGLSLMVEILEGRIDYKKYIISNLLECKD
                     KNKYHILKEMLFASFENIYHIPFIFKGKACLFQMKKRVKFLEIYLYFSVFGALKILID
                     EGGISIFTPFFKVQKFLNEHLQFNVLQDKNIQPLFVFKKLFDFKG"
     gene            complement(4626..5780)
                     /gene="coaBC"
                     /locus_tag="SB143_001602"
     CDS             complement(4626..5780)
                     /gene="coaBC"
                     /locus_tag="SB143_001602"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEF9750119.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGIGAL
                     AEVKDIFNISKRELFKQSFWCDKEVVISGGGTKEKIDNVRCVSNFSSGKMAKAIADAF
                     YFLGAKVTLLSSVYFDTPYSLKSFESSRELKELLEQNSNKDYLIMAAAVSDFIPEFKK
                     GKIKKNEHLKGLNLHLRLNEDLLKNLNFKGKKIGFKMEFDAQNALENAKKSLNDKKLD
                     MVCLNILEEENYFGSSKNEIHFITVNKIEKSGLKSKEDLAFDLVSWCEKI"
BASE COUNT         2164 a         1033 c          782 g         1911 t
ORIGIN      
        1 tatgcttttg caacaaacta tgcgaaagaa aatggattaa gttttattca tccttttgaa
       61 gatgaacttg taatggcagg acaaggcaca cttatgcttg aaatgcttga tgatgtaagc
      121 gatcttgata ccatcatagc tcctgtaggc ggtggtggac ttattagcgg tatagcaagc
      181 gctgcaaagc agattaatcc caatatcaaa attattgcag taggtgctaa aggagctcct
      241 gcaatgcatg atagctttaa agcaaaagag gttaaaaact ctaaaagtgt ccgtactata
      301 gcagatggta ttgctgtgcg cgatgctaat cctattaacc taggtatcat ccttgaatgc
      361 gtggatgaat ttgttcaagt agacgatgaa gaaatcgcta atgcggtatt gtttttgctt
      421 gaaaaacata aaattatagt tgaaggcgca ggtgctgcaa gcgtagccgc cctacttcat
      481 caaaaaatag atataaaaga ttctaaaaaa atcggcgttg ttttaagtgg cggcaatatc
      541 gatgtgcaaa tgctaaatat catcatagaa aagggtcttt ttaaagctta tcgtaaaatg
      601 caaatcaatg ttactttaat cgataaacca ggagccctac ttaatcttac agatagctta
      661 aaatcagcca atgcaaacat agtcaaaatt gattatgata gattttcaac aaagcttgat
      721 tatggcgatg ctatgatttc tattacctta gaaactaaag gcaaagaaca tcaagaagaa
      781 gttagaaata tcttaaaaga taaaggtttt gatttttacg aaactttcta ataagaaatt
      841 ctactcagat aaagtccaca aggcggggct aaaaaatgat tgtattgttt tttagcttcg
      901 atttgctctt ttaactcttc tatactcatc ttattttcta aaacttttaa aacactcgca
      961 accattagtc ttatttgcgc ccttaaaaaa ccattagcct taaaacgaaa aatggtaaaa
     1021 tccttataag aatacgcttt agctaaaaat atttctctga tagtcgtttt attatctcct
     1081 ccgctcttgc aaaagaattt aaaatcctta atacctacaa aattttgcaa aacaagatca
     1141 gcctttaaaa catcaataaa aggataaaaa tgaacataag aagctaaaaa aggattataa
     1201 accccgtgat aaaaaatata gcgatattct ctacttttta catcgtatct tacttcaaaa
     1261 tttgaaggca tgatttttaa atttttaaca tgtataaaag gatgagaaaa tttattgatt
     1321 tgttttttaa gatagtttaa atccctaaaa tgctccccgc attccacgca agcaacagca
     1381 tagcttgcat gcaccccttt atctgtgcga gaagccatca aaacagagga aaaaattcca
     1441 agatgactta aggcatcttg caaggcatct tgaacgcttt ttttgtgagg ttgggtagct
     1501 gaacctaaaa atttcgatcc atcataggaa aaaataattt ttaatttcat caataacgac
     1561 tcaaaatcat ctttttaaaa caaacaatag acgcaataaa acttaaagca aatattccaa
     1621 tacaagctaa aataggaggc tgtgaaaaag aacttaaaag cccaaaatac acagcaataa
     1681 ccccaaacat cccaaaataa ataaaacctt tttcataacg ataagttact ataccaaaag
     1741 aaagggcaaa aagcgtactt gcgagtggaa ataatgctat ggttacatag attacaaatt
     1801 ctttcgcgcg tttgggattt gtatttaaat cattccaata ctcataaaat tttttagttt
     1861 gtaaattttg atcattaaat tgtgtattga ctataagctt atcaaaattt ccaataaaaa
     1921 gcgtttggcc attttcaaaa ttatacattt tgccattaga aagcttaaaa gcaaagctgt
     1981 cttcatttct ttgtgctgtt gcttcttttg cgataatcaa ttgctctttg tcttctatat
     2041 tgcgttttgg atgatacatg atgatatttt catatctgtc actttcttgc ttctcaataa
     2101 aaatcatcca ttcaagaaat ctttgtccaa attcacccgt tttataatta aatttaacct
     2161 gagttttttt aaaattaaca aaattatctt gcaattcaaa cactataggt atcataacca
     2221 aagctataat taacatcaat gcacttacta aagcggcgat ttttaaaaaa aacttagcta
     2281 aaattttagg tgaaaatccc aaggtaaata acactatgct ttcattctct ctagaaagcc
     2341 taaaaagagc caaagtaaga gcgataaaaa aagctatagg cagggtaaaa ataagaattc
     2401 taggcagcat aaagccgtat aatttaagca aatctgcaaa attaatctct atactagaag
     2461 taagcttagc aagttgtata aaaaaaacca tagaaactat agtaaaaagc acaaaaaaaa
     2521 tcgataaatt tgtacttaaa aattgattta aaacatatct taaagcaagt ttcatattaa
     2581 ttcctgaaca atcaaatata tcaaatatat cacaaaagca gcattgataa agggtaaaaa
     2641 tgctagtttt gtatttttat tatggataaa aaagggtaaa gacaataacg aagcaagaaa
     2701 aagaattata aaagcactct taaaaccaaa tacccctgcc atactagcaa ggataataat
     2761 atccgcatca cctaaatttt cttgtatgtc ttttgttcta aaatttttta aaaatgctat
     2821 aaaattttta agtaaaaaca aaaaaccagc aaaaataaaa gcttgaacca taaatccatt
     2881 ttgaaaattt tcaaatataa aaaaatacgc aaattcattg ctattaaaag caaaagaaaa
     2941 tgcaataaaa aaaatcaacc aaagcaattt ttgaggcaca gcttgaaatt ttaaatctat
     3001 gcaagagagt gcaaataaaa caaatagaaa aatcagtaaa tggataaatt cccctatatt
     3061 ttggcttagc aaataagcaa tccatgcaaa aatcatcccc aaaacttcag ccaaaaaaac
     3121 agaaaaagga attttaatat gacaagtttt gcacttaaaa cgaagaaaaa tataagaaaa
     3181 aatgggtatt aattccaaag gcttaagttt ttgatagcaa gaaaagcaat aagaacgcaa
     3241 gcttaataag ggcttgtttt cacaaaaacg cattgttaag ctcatacaaa atgaacccaa
     3301 gctcgctcct aaaatagcta aaatcaaaaa agctatggga ttattttcca aaagttctct
     3361 ctctttttct aaattctttt atgatttttt taaattctct ttttgtaaga gaaggaaata
     3421 aggtttcgct aaaataaatt tctgcataag cacattgcca aagcaagaaa ttagacaatc
     3481 ttttagcatt tcccacacga agcatcaaat ccacatccaa aggcaaatct aaattatcgc
     3541 ttatgttttt ttcattgatt tccaagcctt tttcaatcaa gcgtttaacc gaacgcacga
     3601 tttcatcttt tgctccataa ctgatagcta aattcacaca aagcaaatca cagtgcttgg
     3661 ttttttcttc cacaagggct attttttctt gtaaatgtgt atcaagtctt gataaatccc
     3721 cgatagctct taatcttaca ttgttttttt caaattcttt taaggcttcg tccaaacaac
     3781 gatccaaaag ctcaaaaata aattcaatct catcttgagg tctgttccaa ttttccgtgc
     3841 taaaagcaaa aaggcttaaa tttgaaattc cctcctctac acaagcttcc atcagctttt
     3901 gcatggtttt aacaccttga gaatatccaa gcttagctaa aaaacctttt gccttagccc
     3961 aacgcctatt gccatccatt acaacagcaa gatgttttaa ttcattcatt atcacccttt
     4021 aaaatcaaat aattttttaa atacaaataa aggttgtata tttttatctt gcaaaacatt
     4081 aaattgcaag tgctcgttta aaaatttttg caccttaaaa aagggggtaa atatcgaaat
     4141 tccaccctca tcgatcagaa ttttcaaagc tccaaaaacg ctaaaataaa gataaatttc
     4201 taaaaattta accctttttt tcatctgaaa caaacaagcc ttacccttaa agataaaagg
     4261 gatatgataa atattttcaa aacttgcaaa aagcatttct tttaaaatat gatatttatt
     4321 tttatctttg cactctaaaa gatttgaaat aatatatttt ttataatcaa tcctaccctc
     4381 taaaatttca accatcaaag ataatccctc ttcaaaggga tgaaaatcag gccttttaga
     4441 taaatgctta aatgcgatcg cgccgccttt ttctatataa agctcggcta aatactcagc
     4501 tccaatttct aattctatca tgcttttggt ttgaattttt ctatgattga gcaaaagtgt
     4561 gtagtgtgca tagcctgatt ttgctaaaac tttcatttgt ataggtaggg ttgagtttat
     4621 catattcata ttttttcaca ccaagaaacc aaatcaaaag ccaaatcttc cttgcttttt
     4681 aaaccgcttt tttctatctt atttactgta ataaaatgaa tttcattctt agaacttcca
     4741 aaataatttt cctcttctaa gatatttaaa caaaccatat caagtttttt atcattaagc
     4801 gattttttcg cattttctaa agcattttga gcgtcaaatt ccatcttaaa gcctattttt
     4861 ttacctttaa aatttaaatt tttaagcaaa tcctcattta atcttaaatg caaatttaaa
     4921 ccctttaaat gctcattttt tttgattttg ccttttttaa attcaggtat aaagtcactt
     4981 acagctgccg ccatgattaa ataatctttg tttgaatttt gctctagcaa ttcttttaat
     5041 tctcgcgagc tttcaaaact cttaagagaa taaggagtat caaaataaac cgaactcaaa
     5101 agcgttactt tagcccccaa aaaataaaac gcatcagcga ttgcctttgc catttttcca
     5161 cttgaaaaat tactcacaca acgcacatta tcaatctttt cttttgtccc cccaccacta
     5221 atgacaactt ctttatcaca ccaaaatgat tgcttgaaaa gctctctttt gcttatatta
     5281 aagatatctt ttacttcagc caaagctccg ataccttcat ctttacaagc taaaacttta
     5341 caaataggct ctataatcaa agctttattt tctttaagca tctttaaaga attttgcgtg
     5401 ctaaaatgat gaaacatatt tgtatttgcc gcaggagcta tgataagagg tttatttgct
     5461 gcgattaagg tttggataaa aagattatcc gctataccaa aagcaagttt attgatagaa
     5521 ttaacacttg caggggcaaa caaaacaagg tctacatcct tgctaaaagc tatgtgattg
     5581 tttgaatttt gccaactttc attttcctca cataaaactt catcaaccaa ggcttcaaaa
     5641 ctcattttgc tagcaaattt taacaaacca ttagaaagca aaacttttac cctaaagcct
     5701 tcttttttaa acaaagaaat aagctcataa gatttataaa aagctatact gccactaatg
     5761 gctaaaagta tggttttcat ttttgaaatt tcttataata ataatctttt atcattttat
     5821 gctctgctct attgataaac aaagcacctt tttctacatt gacacttact gtgcttcctg
     5881 ctgctatgat
//
LOCUS       DARAII010000108         5883 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.108, whole genome shotgun sequence.
ACCESSION   DARAII010000108 DARAII010000000
VERSION     DARAII010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5883
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.108"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..444
                     /locus_tag="SB143_001603"
     CDS             <1..444
                     /locus_tag="SB143_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEF9750120.1"
                     /translation="PGSGYSGIYIKEGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQ
                     FSNGKNAIVGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQAINTAKFKGG
                     FLEQSNVDLSVQLSNLIATQKSFDASSKSITASDQMIQKAINMKR"
     gene            complement(448..2319)
                     /locus_tag="SB143_001604"
     CDS             complement(448..2319)
                     /locus_tag="SB143_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEF9750121.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKRKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSFKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIANNSD
                     TECENLKNLSLKIKSKLDDTISEMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2276..3040)
                     /locus_tag="SB143_001605"
     CDS             complement(2276..3040)
                     /locus_tag="SB143_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEF9750122.1"
                     /translation="MEIKWSKDFSIKNMQLDKQHELIFEIAEIANDLALKIQDNDVQH
                     KNDLKQILTKLFQYVKIHFKDEEKFMESIDFPLIEEHRKSHQILLKKTKELLEHSNDI
                     VKMSFELSTLTKDWILDHFANEDLWIANFTKKALHLQEIHYNLEQYIKLKSIRQDLKT
                     EKTYDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNPRNFQSF"
     gene            3232..3329
                     /gene="ffs"
                     /locus_tag="SB143_001606"
     ncRNA           3232..3329
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="SB143_001606"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            3477..5285
                     /locus_tag="SB143_001607"
     CDS             3477..5285
                     /locus_tag="SB143_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DASS family sodium-coupled anion symporter"
                     /protein_id="HEF9750123.1"
                     /translation="MEKKKIPMLILCVLIALAFWIIPTPIGLEENSWHFLGLFIAVIM
                     AVILQVMPLGAVCMIAIAIVALSGITTTQSSVRATHIKTLEAIVLKDNSNIYKVTMEQ
                     KSQASILENLIKANVAKNLEPKVNEILKSNSNIEYQIDSLNKLYAKATSKVAAQKLID
                     ESKIAALNSLALEFMSQKDIDEKVNTAISSLKSKTGIKDALSGFSNSLIWLIVVSIIV
                     ARGVIKTGLGERLAYYFISIFGKKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIV
                     QAISRSFKSTPEDGTQNKIGTYLSLVNFQANPISSAMFITATAPNPLVVDLVAQATNL
                     EVHLTWGQWALGMFLPGIAAMLLMPLAIYFLSPPEIKSTPNAKIFAKGKLEELGAMKG
                     SEKIMLGVFVLLLLLWAGALGFLFGISLDATSVALLGLSLVLVSGVLTFGEVLAEKAA
                     WNTLVWFSALVMMATLLGKLGVTQFLAEALGEFASAMGLGEISIMIFLSLAFLYTHYF
                     FASTTAHISAMFFVFYSAGLALGAPPLLYAFIMIASGNVMMALTHYATGTAPVIFGTG
                     YVSLKKWWSVGFVISVIDITVMILVGLVWWKFLGFY"
     gene            complement(5320..>5883)
                     /locus_tag="SB143_001608"
     CDS             complement(5320..>5883)
                     /locus_tag="SB143_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEF9750124.1"
                     /translation="IFPLGEMKKEDVKKFASTIEVLKSFATQKESSEICFVEDTYVQV
                     LDQFMDTKIPGEVLDSSGKVVGKHEGYMHYTIGKRRGFEVRGAHKPHFVLKINPKQNQ
                     IIVGTKEELKINEFKLKNINLFIDAKELDCEVKIRYRSKSTPCKVIISDDKSASISLK
                     ESVYGLASGQMAVFYDGDKVIASGFIE"
BASE COUNT         1778 a          854 c          942 g         2309 t
ORIGIN      
        1 cctggttcgg gttatagtgg gatttatatt aaagaaggcg tcgaaaaaaa tgtagttaca
       61 caacaagatg gtgtagctga agggtttttt gaacaatata atatatccga tgatggaagt
      121 atagttgcgc aatttagcaa tggcaaaaat gccatagttg gaaagcttgc tttatataat
      181 tttatcaatg agcaaggatt ggttgctatg ggagataata tttttgcagc aacagccaat
      241 agcggagatg ctagctttat catgaaagat ggacaagcga tcaatacagc taaatttaag
      301 ggtggatttt tagagcaatc caatgtggat ttaagtgttc aattatccaa tcttatagca
      361 acgcaaaaat cctttgatgc aagctcaaaa agtatcactg caagtgatca gatgatacaa
      421 aaagccatta atatgaaaag ataattctta ggaattatct ttttctaatt tttcaaaaat
      481 aattttaatt tcttctatgt cgctttcgct ataattatgg cttgatttaa tataacttac
      541 ttgctgtcct ttttcaagat ataaaacctt ttcatagtct tttaaattta tatgatgttt
      601 tagttcaagg ttggtgtttg tgttaggata aaattttaaa aaattatcct ctccgatatt
      661 ttcggctttt atgtatattt ttacattgta aaccatttca tttaagaaat ttaatttcgc
      721 atcaatttga tattttaatt ttataaattt tttatacgaa atgctaagat gattgtattt
      781 ttttatgata tcgtgataaa gatttgaaaa tttcatttct atggcgctag gatttttagt
      841 cttttgaagt ttgatgattt tgatttgatt tttgattaga taatcatagt aattttgcat
      901 ttcgcttatg gtgtcatcaa gcttactttt tattttaagg cttagatttt taagattttc
      961 gcattctgta tctgagttgt ttgcaataga aactagtggt gaaactacga tattgttttt
     1021 aaattttata ttgtttgtta tgattagatt ttttcttgga tataaagtat tatccgttag
     1081 taaattgcaa atataaatat tttctgcttc tatttttcca cccatgcagt tttcaacaaa
     1141 tacattttta gctataattg tcccattttc taaatttttt atatatacag tgtcagcttg
     1201 caaagttcct ttgtgtgttg taataaaaat atcttgtgca aaaatttcgc tttttgcatg
     1261 agttaagcct ttgatactga tattttttcc ataaagtttt gttgctccaa cattcccatt
     1321 tacttttata tttgaagctt gaacatttac aatacctgat ttaatagcat catcacttat
     1381 atcaaaatta gtgatttcta agtttatatt ttcatcggta tttgttttga atgaaccggt
     1441 tgttttaagc cctatttgtg ataattttaa attatttgcg atacaatatc ctgtatgatc
     1501 tttgtttaaa aatccataat tggcgctaaa atatttaatt ctatcttcta attcttctgt
     1561 gtaaatgctt tcatctttta tgataaaagg attatcaaga aaggctattg gatttaaatg
     1621 aagtatctct cctcttaaat ttcgtccttc ttttccaaga attctataaa tgtattcaaa
     1681 aagtagctca tttttttcaa taggtttaca gtagtttcct tcatcatagt taatattttc
     1741 gtcaaaacat tcttcgttaa catctctatg ataaataatt tcatcacttt tatgttcaat
     1801 cttatctaca cctttggcaa tttcaagctc tatttcttta atagatggac ttttttgtat
     1861 tgataagata aaatcatcaa tcttgtcaaa taaattttta tcaagtctta agattaaaaa
     1921 tttttgtttg atcattattt tgtagatatt ttgcaaaata tcaaatttta aattagggta
     1981 atatttaaaa ttttctgtaa ggttgatact ggcttttaga tgggttaggt tggagttgga
     2041 tctaagtttg actgtaaaag gaaaactttg ggtttttggg taaatttcta taagaaattt
     2101 ttgcactatg gtattgtagt tttttacaaa aaaatcatct gcataaaata agtcaaaatc
     2161 ctttctttca taagtttttc tttttgctgg ttttacacta gaacacagaa gtttaaaatc
     2221 tataactcta aaatcaagaa tttgttctgt gtttgcttgt tcatgattta aactttcaaa
     2281 aggattgaaa gtttctaggg tttttacttg aaaattcatc tatccccccc cccatatcat
     2341 ttttttgagt cgtgaaatgg tgattttgta gtgcatcttc aaaaatagca ttgaattttt
     2401 cgaaattttg attcaaatca aaataatcca aatgaactaa aatttgccca catttttcgc
     2461 actttaaggt attttctttg ctaacaagct cttgatgtat agtctgtgga actgcatgga
     2521 tacgcaaaga acaattgcaa atataatcat aggttttttc agtctttaaa tcttgcctaa
     2581 ttgattttaa ttttatgtat tgctctagat tataatgaat ctcttgaaga tgtagagctt
     2641 tttttgtgaa gttagctatc cataaatctt cattagcaaa atgatctaaa atccaatctt
     2701 tggtcaatgt tgaaagttca aatgacattt taacaatatc atttgagtgt tctaaaagct
     2761 ctttagtctt ttttaataat atttgatgag attttctatg ttcttcaatc aaaggaaaat
     2821 caatgctttc cataaatttt tcttcatctt tgaaatgaat ttttacatat tggaataact
     2881 ttgtaagaat ttgttttaaa tcatttttgt gttgcacatc attatcttga atttttaaag
     2941 ctaaatcgtt tgcaatttca gcaatttcaa aaattagttc gtgttgtttg tctaattgca
     3001 tatttttaat gctaaaatct ttactccatt tgatttccat gatttttcct taaaaattta
     3061 tataatatat ctataataat cgtatttccc tgaaaaaaac aataattttg caaattaaat
     3121 ttaaaaattt atataaaata tagccaattt gttacatatt tatacatttt tatatttagt
     3181 ttttatagct caacactttt taagtatatt atgatataat ttctttgcct tttcttagac
     3241 ctgtgcaatg ctatttttaa gcaccgcttc agggtgggaa cacagcagag cacttgattg
     3301 tagtgtgtgc cgcagccatc tgggaaaggg tttatttcat ttaaacttac tttttatatc
     3361 tcttaaatat ttttattttc atatagaatt tcaagacttt ggtaaaaatt ttttaatact
     3421 taattaagaa ttgttaaatt aaaatttaac aaatttaata caataaagga gcttaaatgg
     3481 agaaaaagaa aatccccatg cttatactgt gtgtccttat tgcgcttgca ttttggataa
     3541 tccctactcc tataggttta gaggagaatt cttggcattt tcttggactt tttattgcgg
     3601 tgattatggc ggttatctta caggtaatgc ctttaggagc tgtgtgtatg atagctattg
     3661 ctattgtggc actaagtgga atcacgacca ctcaaagttc tgttcgtgct acacatatca
     3721 aaactcttga agccattgtt ttaaaagata attctaatat ctataaagtt accatggaac
     3781 aaaaatcaca agctagtatt ttggaaaatc tcatcaaagc aaatgtggct aaaaatttag
     3841 aacctaaagt aaatgagatt ttaaaatcta attcaaacat agaatatcaa atagatagtc
     3901 taaataaact ttatgcaaaa gcgacttcaa aagttgctgc gcaaaagctt attgatgaga
     3961 gcaagatcgc ggcattaaac tctttagctc ttgaatttat gtcccaaaaa gatatagatg
     4021 aaaaagttaa tactgcaata tcaagtttaa aatccaaaac aggtattaag gatgctttaa
     4081 gcggattttc taattcttta atttggctta tagtagtttc tatcattgta gctcgtggag
     4141 ttataaaaac aggacttgga gagcgtttgg cgtattattt tatcagtatc tttggtaaga
     4201 aaactttagg tattgcgtat tctatcgcat tttgcgaaac catcttagct cctgtaaccc
     4261 cttcaaatac agcaagagcg ggtgcgataa tcaatcctat agttcaagct atctcaagaa
     4321 gttttaaatc tactcctgaa gatggaacac aaaataaaat aggcacctat ctttctttgg
     4381 tgaattttca agccaatcct atttcttcgg caatgtttat cacagccact gctccaaatc
     4441 cattggttgt tgatttggtc gctcaagcta caaatttaga agtgcattta acctgggggc
     4501 aatgggcttt aggtatgttt ttacctggta tagcggctat gcttttaatg cctttggcga
     4561 tttattttct ttctccacca gagattaaat caaccccaaa tgctaagatt tttgcaaagg
     4621 gtaagttaga agaactgggt gctatgaagg gtagtgaaaa gattatgcta ggtgtttttg
     4681 tattgctttt gcttttatgg gcaggggctt tgggctttct ttttggaatt tctcttgatg
     4741 ctacaagtgt tgccttgctt ggtctttctt tggttttagt aagtggagtt ttgacttttg
     4801 gtgaggtgtt ggcagaaaaa gctgcttgga atactttggt atggttttca gcccttgtga
     4861 tgatggcaac tttacttgga aagctcggtg taacgcagtt tttagctgaa gctttgggtg
     4921 aatttgcctc tgctatggga cttggtgaaa tttctattat gattttctta agccttgcct
     4981 ttttatatac gcattatttc tttgcttcaa ccacagcgca tatttcagct atgttttttg
     5041 tattttatag tgcaggactt gctttagggg ctccaccact tctttatgct tttattatga
     5101 tagcatcagg aaatgttatg atggccttaa cgcattatgc aacaggaaca gctccagtta
     5161 tttttggaac aggttatgta agtcttaaaa aatggtggtc tgtaggattt gttatttcag
     5221 tgatagatat aaccgtaatg atacttgttg gccttgtatg gtggaaattt ttgggatttt
     5281 attaaaatct tatcaaagct tttaaagctt tgataagtct tattctataa acccgcttgc
     5341 aatgacttta tcaccatcgt aaaatactgc catttgccca cttgctaaac cataaacact
     5401 ctcttttaaa gaaatgcttg cgcttttatc atcacttata atgactttac acggggtgga
     5461 ttttgatcta tagcggattt ttacttcgca atcaagctct tttgcatcga tgaaaagatt
     5521 gatatttttg agtttaaatt cattgatttt taattcttct ttggtgccaa cgatgatttg
     5581 attttgttta ggattgatct ttaaaacaaa atgcggtttg tgagccccgc gtacttcaaa
     5641 accgcgtctt ttgcctatgg tatagtgcat atagccttcg tgttttccta caaccttacc
     5701 gctactatct agcacttctc ctggaatttt agtatccata aattgatcta aaacttgcac
     5761 ataagtatct tcaacaaagc aaatttcaga actttctttt tgggttgcaa atgattttaa
     5821 aacttctatg gtagaagcaa attttttcac atcttctttt ttcatttcgc ccaatggaaa
     5881 gat
//
LOCUS       DARAII010000109         5859 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.109, whole genome shotgun sequence.
ACCESSION   DARAII010000109 DARAII010000000
VERSION     DARAII010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5859)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5859)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5859
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.109"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..174
                     /locus_tag="SB143_001609"
     CDS             <1..174
                     /locus_tag="SB143_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEF9750125.1"
                     /translation="KTPEATEEDLTRIFKDNLNYLHQAMVLFGRYTCKAKKPLCKECF
                     LNHLCKSKDKELE"
     gene            171..821
                     /locus_tag="SB143_001610"
     CDS             171..821
                     /locus_tag="SB143_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEF9750126.1"
                     /translation="MKLIIFLLAFTLHVFALEAYKPDKDFAPYFNPLNCSVVLDKFFY
                     TNCYDYKLKGTKAVAYKVEASNLKEKQIKKRTRFEDDTNIPKKYRSTWSDYKNSGYTR
                     GHIASNASFRFSKAAQTSVFLMSNITPQNAQVNATVWNEIEQRERSLAFKFQSVEVLN
                     LILYGKNPKFIKNGIAIPSSYVKIIKTSRFEECYEVPNNNIQSEEINDYKISCNKF"
     gene            831..1463
                     /locus_tag="SB143_001611"
     CDS             831..1463
                     /locus_tag="SB143_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEF9750127.1"
                     /translation="MEISALTITILYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIVLICLCALVATKIPRIVSRLESLFLTLDAIGL
                     VVFSILGAQIAIEQNHGFIIAISAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYTLMVYLQLHALICTLVTLFVGVTARLLAIKYQWSLPIFSYNEEK"
     gene            1542..1760
                     /locus_tag="SB143_001612"
     CDS             1542..1760
                     /locus_tag="SB143_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEF9750128.1"
                     /translation="MNKAILLTLICLFFTACEQTKSVEYYKAHPEEAKKRSDECRLKS
                     IISQDCVNAHSVAIPKEDWDEGHDTQTR"
     gene            complement(1764..2468)
                     /gene="cmoA"
                     /locus_tag="SB143_001613"
     CDS             complement(1764..2468)
                     /gene="cmoA"
                     /locus_tag="SB143_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEF9750129.1"
                     /translation="MKDELFKEKLTKQFEFDKSVASVFDDMINRSVPFYRENLELCAN
                     LIKKLTKEGAKVCDLGCSSANFLIFLASLRKDLKLFGADNAPSMLEIAKSKAQAYGLN
                     IEFFEANLCDFVFFQSDVFVANYTLQFIRPPKRQELVNEIYKNLNKGGIFIMSEKILY
                     EDAFLSKNMIELYADYKERQGYSKIEIAAKREALENVLIPYSEKENLDMLKNAGFEKI
                     ESVFKWVNFETFIAFK"
     gene            complement(2472..3308)
                     /locus_tag="SB143_001614"
     CDS             complement(2472..3308)
                     /locus_tag="SB143_001614"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEF9750130.1"
                     /translation="MNIFTTTLKNNIKTLAIGCFDGVHLGHRKLIECLDDSGALLIID
                     KFKGKKLCTNQDKAFLAQKEIIELDFENIKALDGKDFLQALKEEFVNLERIVVGFDFS
                     FGKNRSYKAKDIEALSGIKTTIIDEFKLDGVGVHASLIKEYLTQGDIKKANSFLGRNY
                     AIKGKLIKGQGLGSKELFATLNLECEEYFLPKNGVYASIVSFHDKRYKSVSFVGVRSS
                     DMQFAIESHIIEKFDESLAIGEVLELEFVEFLRENQKFNDLAQLKEQISKDINQAKEC
                     LG"
     gene            complement(3277..4026)
                     /locus_tag="SB143_001615"
     CDS             complement(3277..4026)
                     /locus_tag="SB143_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEF9750131.1"
                     /translation="MRYDIFVAKRLNLSRNKALELIENEEILLNSKPYKASFDVQNLL
                     KNKIADQEELLNSKELNLELLGELYVSRAAFKLKYFLENHNINIANKTCLDIGSSTGG
                     FVQILLEHKALKVSALDVGDNQLHPSLRDDKRIEIIENTDLRTFKSEQKFDFITCDVS
                     FISLAYLLSYIDNLALKDIVLLFKPQFEVGKQAKRDKKGVLKDEKAVFKAMREFENAC
                     ARLGWILQCCEESKIKGKEGNIEYFYYYTKK"
     gene            complement(4023..5027)
                     /locus_tag="SB143_001616"
     CDS             complement(4023..5027)
                     /locus_tag="SB143_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750132.1"
                     /translation="MSLLKNNIQLFVLLSIFAFLFFWQKFAWVSLFLIPIFLAFFLEF
                     FYFLRLRKNIIKEATMIKDSLIYRVSAGDFYIYSLSFFMALFALASLFLNLISFEKQD
                     GFFLFVLLPLFLFFFKQKLQLQFLDNAYNDFRIIILSSLILALLYAIFNGVVNPIQSF
                     NLEDFNQSIIYYKNSKFFIFDLISQILTLINALKEYFLYSLGLFWFRVLNFIFDFINF
                     FIFCSFVAYLYNFAFKAKKKTYVFVFSFFITLASFFIIEDKNQNPKAYQKELVLMMNN
                     LSFLKEQNLSMLQNDKDRLVKNLKQVQELLDKNAFEIGIWWFSKEKEELQKALNESLQ
                     "
     gene            complement(5008..>5859)
                     /locus_tag="SB143_001617"
     CDS             complement(5008..>5859)
                     /locus_tag="SB143_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEF9750133.1"
                     /translation="IRSGDVIPKITKVFKERRDGLELDIARPRFCPTCKSELLDEGTL
                     IKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHKKITTLESIFHLKFSDF
                     EGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVAAKKLALSFGKEWHKQS
                     LEAYANLEGFGEQMALSLCEFSRVNSARIDEFYKLLNLKEQKVQIQEDSVIFGKTFVI
                     TGALSRPRDEFKNLIESLGGKVSGSVSKKTDYVLFGQEAGSKLDKAQELGVKCIDENE
                     FNELIEK"
BASE COUNT         2080 a         1054 c          754 g         1971 t
ORIGIN      
        1 aagactcctg aagcgactga agaggattta acacgcatat ttaaagacaa tcttaactat
       61 cttcatcaag ccatggtgct ttttggacgc tatacctgca aggctaaaaa acctctatgt
      121 aaagaatgtt ttttaaacca tctttgcaaa agtaaagaca aggaacttga atgaaactta
      181 tcatcttttt attagcattt acacttcatg tttttgcttt agaagcttat aagcccgata
      241 aagattttgc gccttatttt aatcctttaa attgctctgt tgttttggat aaattttttt
      301 ataccaattg ttatgattat aaactcaaag gcactaaagc cgtagcctat aaagtcgaag
      361 cgtccaatct aaaagaaaaa cagatcaaaa aacgaactcg ctttgaagat gacacaaata
      421 tccctaaaaa ataccgcagt acttggagtg attataaaaa tagtggttat acccgaggac
      481 atatagcctc aaatgcttct tttcgcttta gtaaagcagc acaaacatcg gtttttttga
      541 tgagtaatat cactccacaa aatgcacaag ttaatgcaac ggtttggaat gaaatcgaac
      601 aaagagaaag aagtcttgct tttaaattcc aaagcgttga agtgctaaat ctaatacttt
      661 atggtaaaaa tcctaaattt attaaaaatg gcattgctat accgagttct tatgttaaga
      721 ttatcaaaac ttctcggttt gaagaatgtt atgaagtacc caataacaat atccagagcg
      781 aagaaatcaa tgattataaa atttcttgca ataaattcta aaggctatga atggaaatca
      841 gtgctttaac cataaccata ctttacatta taggaatttc agcagagggt atgacaggtg
      901 ccttggctgc aggcagacat aaaatggatc tttttggagt aattttcata gccttagtaa
      961 ctgccatagg aggtggaagc atacgcgatg tgcttttagg tcattatcca cttacttggg
     1021 ttaaacatcc tgaatatatt gttttaattt gcctttgtgc tcttgttgcc actaaaattc
     1081 cacgcattgt tagcagatta gaaagtttat ttttaacgct tgatgccata ggacttgtag
     1141 tctttagcat acttggcgca caaattgcaa tagaacaaaa ccatggcttt atcatcgcaa
     1201 tctctgcagc agtgattaca ggtgtttttg gtggaatttt aagagatatt ttatgcatga
     1261 gaattccttt agttttccaa aaagaaattt atgcaggaat cgcaatcata gcaggggcga
     1321 tttattatac tttaatggtt tatcttcaac tgcatgcttt aatttgcacg cttgtaacgc
     1381 tatttgtagg agttacagct aggcttttag cgatcaaata ccaatggtcc ttacccattt
     1441 tttcttataa tgaggaaaaa taatgaattg tatttataaa aatttgctaa gataaaaaga
     1501 agcgtgataa aagtttaatt atgcttttta aggaaaatac tatgaataaa gcaatactac
     1561 ttacccttat ttgtttattt tttacagctt gtgaacaaac caaaagtgta gaatactaca
     1621 aagctcatcc cgaagaagcc aaaaaaagaa gtgatgaatg tcgtttgaaa tctatcatca
     1681 gtcaagattg tgtaaatgct catagcgttg ctatcccaaa agaagattgg gatgaaggcc
     1741 atgatacaca aacaagataa tttttattta aaggctataa aggtttcaaa attaacccac
     1801 ttaaaaacac tttctatttt ttcaaatcct gcattcttaa gcatatctaa attttctttt
     1861 tcactataag ggataagaac attttccaaa gcctcccttt tggctgcaat ttcgatttta
     1921 gaataacctt gtctttcttt ataatctgca taaagttcta tcatattttt agacaaaaaa
     1981 gcatcttcat aaagaatttt ttcactcatg ataaaaatac cacctttgtt taaattctta
     2041 taaatttcat taacaagttc ttgtctttta ggcggacgga tgaattgcaa agtataatta
     2101 gctacaaata catcactttg aaaaaaaaca aaatcacaca aattcgcttc aaaaaattct
     2161 atatttaagc cataagcttg tgcttttgat ttggcgattt caagcataga aggtgcatta
     2221 tccgcaccaa aaagcttaag atcttttctt aagctggcta aaaaaattaa aaaattcgca
     2281 ctagaacaac ccaaatcaca aacctttgct ccctctttag tcaatttttt tatcaaattt
     2341 gcacaaagtt ctaaattttc cctataaaaa ggcacagagc gattaatcat atcatcaaaa
     2401 acacttgcga cactcttatc aaattcaaat tgtttggtta gcttttcttt aaaaagttca
     2461 tctttcattt tttatcctaa acactcttta gcttgattta tatcttttga aatttgttct
     2521 ttaagttggg caaggtcgtt aaatttttga ttttctctta gaaattctac aaattcaagc
     2581 tccaaaactt ctcctatagc taagctttca tcaaattttt ctataatatg actttctatg
     2641 gcaaattgca tatcactaga gcgcacaccc acaaaactta cactcttata gcgcttatca
     2701 tgaaaactca cgatgctagc ataaacgcca tttttaggta aaaaatattc ctcgcattct
     2761 aaatttaaag ttgcaaaaag ctcttttgag ccaagccctt gaccctttat gagcttgcct
     2821 ttgattgcat aatttcgccc caaaaaagaa tttgcctttt tgatatcacc ttgcgtcaaa
     2881 tactctttaa tcaagcttgc atgaacacct actccatcta gcttaaattc atctatgatc
     2941 gttgttttaa tcccactaag ggcttctata tcttttgcct tataacttct attttttcca
     3001 aaagaaaaat caaaacctac aactatacgc tccaaattta caaattcttc ttttaaagct
     3061 tgtaaaaaat ccttaccatc taaagctttg atgttttcaa aatcaagctc tataatctct
     3121 ttttgagcta ggaatgcttt gtcttgattg gtacaaagtt ttttaccctt aaatttatcg
     3181 ataatcaaaa gagctccaga atcatctaaa cattctataa gttttctatg tcctaaatga
     3241 actccatcaa aacatcctat ggctaaagtt ttaatattat tttttagtgt agtagtaaaa
     3301 atattcaata ttaccctctt ttcctttgat tttagactct tcacaacatt gcaagatcca
     3361 acctaaacgc gcgcaagcat tttcaaattc tctcatagct ttaaacacgg ctttttcatc
     3421 ttttaaaaca ccctttttat ctctttttgc ttgcttgcca acttcaaatt gaggcttaaa
     3481 aagcaaaact atatccttta aagctaaatt atcgatatac gagagcaaat aagctaaaga
     3541 aataaaacta acatcacaag tgatgaaatc aaatttttgc tcgcttttaa aagttcttaa
     3601 atctgtattt tcaataattt caatcctttt atcatcgcgt aaactaggat ggagttgatt
     3661 atcacccaca tctaaagcac ttacttttaa agccttgtgt tctaataaaa tttgcacaaa
     3721 accacccgta cttgaaccta tatcaaggca ggttttattt gctatattga tattatgatt
     3781 ttctaaaaaa tatttgagct taaaagccgc gcgagaaaca taaagctcgc ctaaaagctc
     3841 taaatttaat tctttagaat ttaaaagctc ttcttgatct gctatcttat ttttaagcaa
     3901 attttgcaca tcaaaagaag ctttataagg cttggaatta agtaaaattt cttcattttc
     3961 tatcaattcc aaagctttat ttctgctaag atttaaacgc tttgctacaa aaatatcata
     4021 tctcattgaa gactttcatt taaggctttt tgcaattctt ctttctcttt ggaaaaccac
     4081 caaattccta tctcaaaggc atttttatcc aaaagttctt gcacttgttt taaattttta
     4141 actagtctat ctttatcatt ttgaagcata cttaaatttt gctcttttaa aaaagaaaga
     4201 ttattcatca tcaaaacaag ctctttttga taagcttttg gattttggtt tttatcctct
     4261 atgataaaaa atgaagctag agttataaaa aatgaaaaga caaaaacata agttttcttt
     4321 tttgccttaa aagcaaaatt ataaagatag gccacaaagg agcaaaaaat aaaaaaatta
     4381 ataaaatcaa aaataaaatt taaaacccta aaccaaaaaa gccccaaaga atataaaaaa
     4441 tattctttta aagcatttat aagtgttaaa atttgagaaa ttaaatcaaa aataaaaaac
     4501 tttgagtttt tataataaat aatactttga ttaaaatctt caagattaaa actttgtata
     4561 ggatttacca ccccattaaa aatcgcatat aacaaagcta aaatcaagct tgataaaatg
     4621 attattctaa aatcattata agcattatct aaaaactgca actgaagttt ttgcttgaaa
     4681 aaaaataaaa ataaaggcaa gagtacaaac aaaaaaaatc catcttgttt ttcaaaactg
     4741 atcaaattta aaaacaaaga agcaagtgca aacaaggcca taaaaaaact caagctatag
     4801 atataaaaat ctcccgcact cacacgataa atcaaactat ctttaatcat cgttgcttct
     4861 tttatgatat tttttctaag ccttaaaaaa taaaaaaatt ccaaaaaaaa tgctaaaaaa
     4921 atagggatta aaaaaagcga aacccaagca aatttttgcc aaaaaaataa aaatgcaaaa
     4981 atactcaata aaacaaatag ctgaatatta tttttcaata agctcattga attcattctc
     5041 atcaatacat tttacaccca gctcttgagc cttgtcgagt ttagaacctg cttcttgacc
     5101 aaaaagcaca taatcagtct ttttagaaac cgatccacta accttacctc caagactttc
     5161 tattagattt ttaaactcat ctctagggcg tgaaagcgcg cctgtgatca cgaaagtctt
     5221 gccaaaaata acactatctt cttgaatttg caccttttgc tcttttaaat ttaaaagctt
     5281 ataaaactca tcaattcttg cactatttac acgagaaaac tcacacaaag aaagagccat
     5341 ttgctcacca aaaccttcta aatttgcata agcttccaaa ctttgtttat gccattcttt
     5401 accaaaactt aaagctagct ttttagcagc cacttctcca atatgctcga tccccaaggc
     5461 ggtaataaaa cgaaaaagct cacattctct tgcttgttct atggcattta aaagattgtt
     5521 aattttcttt tccttaaagc cttccaaacc ttcaaaatca ctaaatttta aatgaaaaat
     5581 actctcaagc gtagtgattt ttttgtgctt gtataaaagt tctactatat tttctccaag
     5641 tccgtcgata ttaagacatt ttttagaaac aaaatgaatg atagaattta caagtctatc
     5701 ctcacaatca atattttgac attttattaa agttccttca tccaaaagtt cgcttttgca
     5761 agtagggcaa aaccgaggtc tagctatatc aagctctaag ccatccctac gctctttaaa
     5821 aactttagtg atttttggta tcacatcacc acttcttat
//
LOCUS       DARAII010000110         5757 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.110, whole genome shotgun sequence.
ACCESSION   DARAII010000110 DARAII010000000
VERSION     DARAII010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5757
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.110"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..558
                     /locus_tag="SB143_001618"
     CDS             <1..558
                     /locus_tag="SB143_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEF9750134.1"
                     /translation="AKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQYAKMMKLPII
                     DSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQNKLAKTKEFLMHSNAEIDVSLVVSA
                     NTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLIYETNIPLSFFSTGQEVPD
                     DIEVANSDFLVRCILEGFNKGKDNE"
     gene            551..1417
                     /gene="flhG"
                     /locus_tag="SB143_001619"
     CDS             551..1417
                     /gene="flhG"
                     /locus_tag="SB143_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEF9750135.1"
                     /translation="MNNQANKLRSLMNQNGGKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMSDEVVV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNRL
                     NLEFLGHLSASKDVSGSIKKRTLFTDENSASSDELKALASKLLYRLERKVLDNVTSRS
                     FSNFFRKIIERF"
     gene            1437..1793
                     /locus_tag="SB143_001620"
     CDS             1437..1793
                     /locus_tag="SB143_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750136.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIEEAFDILISTCFITFMFY
                     VFIHIAIMNFIDIKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNESKERRKNAKRAA"
     gene            1774..2466
                     /locus_tag="SB143_001621"
     CDS             1774..2466
                     /locus_tag="SB143_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEF9750137.1"
                     /translation="MQKEPPKAYAQMIKDEQDQLVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDSFWGFARKRVNGAMLDFLRSLDVMSRNNRKIIK
                     DIDILIDEYFREHEEEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDDQLELYNED
                     DTLEKLEKEQLLEKIHEVLEDLKERDQLIIQLYYYEELSLKEISEILEISESRISQIH
                     KKLLKKLRERLV"
     gene            2466..3542
                     /gene="fliM"
                     /locus_tag="SB143_001622"
     CDS             2466..3542
                     /gene="fliM"
                     /locus_tag="SB143_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEF9750138.1"
                     /translation="MAEILSQEEIDALLEVVDDNTNTPTASEKDGKDERNIVVYDFKR
                     PNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSPT
                     SFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILRI
                     IMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNICY
                     PVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFL
                     ELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEIL
                     ERYEEERKAKASVYDEPEEEEEEI"
     gene            3539..4375
                     /gene="fliY"
                     /locus_tag="SB143_001623"
     CDS             3539..4375
                     /gene="fliY"
                     /locus_tag="SB143_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEF9750139.1"
                     /translation="MINEFLKLFTNECTSTIEGLTGKSAEFSEYKEFDVSSQDTLKPP
                     LVYAVFNIKEGGKIGILAGAVLMSAIGEWMMGEEEISKNDQLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFEISSCEFVAENVDFKDFTKLYFFDVKIEDLEEQISLIVDQ
                     TLHNILSGKAADDGHAHSSSNSENKGFEISEELKNINLIMDVRLPVRVRIGNKKMLLK
                     DVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERLEQ
                     LR"
     gene            complement(4424..5023)
                     /locus_tag="SB143_001624"
     CDS             complement(4424..5023)
                     /locus_tag="SB143_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEF9750140.1"
                     /translation="MEKILKILLFLPILALSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLSDAVKKLGFQSNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFAVIINHKGNYLQVLDPSHGEYISSKNQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(5008..5184)
                     /locus_tag="SB143_001625"
     CDS             complement(5008..5184)
                     /locus_tag="SB143_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-structuring protein H-NS"
                     /protein_id="HEF9750141.1"
                     /translation="MKQKINGYQNSEVRSIPTLSLGSTYSINSDTAVSVNASFGGSSA
                     SPDSIFGISLWKKF"
BASE COUNT         2089 a          862 c         1010 g         1796 t
ORIGIN      
        1 gcaaagctag cttttcgtta tgcttatgga gataagcgct ataaaacagg tataatcact
       61 ttagatactt atagaatcgg tgctgtagaa caacttttcc aatatgcaaa aatgatgaaa
      121 cttcccatca tcgatagtat agaaccaaaa gatttggacg aggcgattaa aagtcttaat
      181 aactgcgaag taattttagt cgatactata ggaaattcgc aatacgatca aaacaaactt
      241 gccaaaacaa aagaatttct tatgcattca aatgctgaaa ttgatgttag tctagtcgtt
      301 tctgctaata ccaagcatga agatctgatg gaaatttaca aaaatttttc atttttaaat
      361 atcgacaccc ttatcatcac caaatttgat gaaactaagg tttttggaaa tattttctct
      421 ttaatttatg aaactaatat cccactaagc tttttctcta caggacaaga agtgcctgat
      481 gatatagaag tagccaatag cgatttttta gttcgctgta tcttagaagg ttttaacaaa
      541 ggaaaagata atgaataatc aagccaataa actccgtagc cttatgaatc aaaatggagg
      601 aaaaaaatca caaaacactc attttatagc gattacaagt ggaaaaggtg gagtaggtaa
      661 aagcaccatt agcgcaaatt tggcaaatgt acttgctaat aatggatata aagtaggact
      721 ttttgatgca gatattggct tagcaaatct tgatgttatt ttaaatgttc gcattcaaaa
      781 aaatctttta catgttttgc gcggagaatg ctctttagaa gatattttga tcgaagtaaa
      841 gccaaattta tggctcatcc ctggtgaaag cggtgatgaa attttaaaat acaacgataa
      901 aaacatttat gaaagatttt taaatcaagc aagtatttta gatgagcttg attttcttat
      961 catcgacaca ggtgcaggaa taggaggaaa tatactcaat ttcttagaaa tgtcagatga
     1021 agttgtagta gtaaccgttc ctgatcctgc tgcgattacc gatgcatatg caaccattaa
     1081 aaccacctct aagacaaaag aaaatttact gatgctattt aatgttgtca aaaatgaaaa
     1141 tgaggcttta aaagtttttg aaaatattaa aaaagttgct gatgcaaata taaaaaatcg
     1201 tttaaattta gaatttttag gacacttgag cgcttcaaaa gatgtaagtg gtagcattaa
     1261 aaaacgcacc ttgtttacag atgaaaattc tgcttcaagt gacgagctta aagccctagc
     1321 ttccaagctt ttatataggt tggaacggaa agtgcttgat aatgtcacaa gtcgaagttt
     1381 ttcaaatttc tttaggaaaa tcatcgaacg attctaagca ataaagagaa gatattatga
     1441 gacctgaaaa ttatgtagca ttttttaccg tttgcggatt ttttatagga ttggctttta
     1501 gtattattag tatagaagaa gcttttgata ttttaatttc tacttgtttt attactttta
     1561 tgttttatgt ttttatacac attgctatta tgaattttat cgatattaaa aaaatcagtg
     1621 ggcgaatttt caataaacat gattatgaaa agactagcaa taatattata aatgacttag
     1681 tcattcgtga aaagaaaatg gatataatct tagaaaagct taacgaagaa agagaagagc
     1741 ttaagaaaaa cgaatcaaaa gaaagacgca aaaatgcaaa aagagccgcc taaagcctat
     1801 gctcaaatga taaaagatga acaagatcag ctagttttat cctatatgcc tgcacttcgt
     1861 gcaatggctt ttagactaaa agaacgcttg ccttctagca ttgatgtaaa tgatctaatt
     1921 agcattggcg ttgaagaaat gatcaagctt tcacgccgct acgataaaga gcaaaatgat
     1981 agtttttggg gatttgctag aaagcgtgtt aatggcgcta tgcttgattt tttacgctct
     2041 ttggatgtaa tgagtcgcaa taaccgtaaa atcattaaag atattgatat tttaatcgac
     2101 gaatatttta gagaacatga agaagagcct gatgatgaat atctagctaa aaagcttgat
     2161 ttggatgtag aaaagattaa agaagtgcgc accgcacatg ctattagcta tactttaccc
     2221 attgatgatc aattagagct ttataatgaa gatgatactt tagaaaaatt agaaaaagaa
     2281 caacttttag aaaaaattca cgaagtatta gaagatctta aagaacgcga tcaactcatc
     2341 atacagcttt attattatga agaactcagt cttaaggaga ttagtgaaat tttagagatt
     2401 agcgagagta gaatttcaca aattcataaa aaacttttaa aaaaacttag agaaaggcta
     2461 gtgtaatggc agaaatactc tcccaagaag aaattgacgc tctacttgaa gttgtcgatg
     2521 ataataccaa tacgcctaca gcctctgaaa aagatggaaa agatgaaaga aatatagttg
     2581 tatatgactt taagcgtcca aatagggtat ctaaagagca acttaggaca attaaaggta
     2641 tacacgataa actagcaaga aatttagctt ctcaaatttc gtccatgatg agaagtattg
     2701 ttgaaaccaa acttcactcg gtggatcaaa tgacttatgg tgagtttttg atgtcgctac
     2761 caagccctac aagctttaac gttttctcta tcaagcctct tgatggaaac tgcgttttag
     2821 agattaaccc aagcattgct tttcctatga tagatagact tttaggaggt caaggcgata
     2881 gctatgaggc ttcgcgagag cttactgata tagagcttaa tttgcttgat tctattttgc
     2941 gtatcatcat gcaaagactt aaagaaagct gggctacagt aactgaaatt tatcctagta
     3001 tagaagctaa agaatcaagc cccaatgttg tacaaatcgt atcgcaaaac gaaatcgtta
     3061 tcatggtggt gatggaaatc atcataggaa attcaagcgg tatggtaaat atctgctatc
     3121 ctgttgtcca tttagaaagt atcttgagtc gtttagcaaa ccgtgatatt atgatgggtg
     3181 aaacctcagc caaaaaatca cgcaacaaag aacttaaaac tttaatcggt cgtgctgaag
     3241 tggtatatga ggcaatttta ggaaaaacct taattaatgt tcatgaattt ttagaactta
     3301 aacaaggcga tattttaagg cttgatagag aagcagacga taaagctata gtaagtatcg
     3361 ataaaaaaga tgttttctta gcacaaattg gcctacatcg ctttagaaaa tctatcaaaa
     3421 ttcttgaact tatacgcact gataaagatg aaattaaaga aattctagaa agatatgaag
     3481 aagagcgtaa agcaaaagct agtgtttatg atgagcctga agaggaggaa gaagaaatat
     3541 gatcaatgaa tttttaaaat tatttacaaa cgaatgcaca agcaccatag aaggacttac
     3601 aggaaaaagc gcagaattta gcgaatataa agaatttgat gtttcatcac aagatacact
     3661 caaaccgcct cttgtttatg cggtttttaa catcaaagaa ggtggcaaaa taggtatatt
     3721 agcaggtgct gtacttatga gtgctattgg tgaatggatg atgggcgaag aagaaatttc
     3781 taaaaacgat caactaggcc ctgatgaaat ggacgctgct aaagaagcaa ttcaaaacat
     3841 catttcggct ttttctacca ctttaggcgc acaaaaagac ataccaaaaa tggattttga
     3901 aatcagctct tgcgaatttg tagcagaaaa tgttgatttt aaagatttta caaaacttta
     3961 tttctttgat gtcaaaatag aagacttaga agagcaaatt tctttaattg tagatcaaac
     4021 tcttcataat attttaagcg gcaaagctgc agatgatggc catgcacact ctagctcaaa
     4081 ttcagaaaat aaaggttttg agataagtga agaacttaaa aatatcaatc tcatcatgga
     4141 tgtgcgtttg cctgttcgtg tgcgtatagg caataaaaaa atgcttttaa aagatgtttt
     4201 aactatggat ataggctcag ttgtggagct taatcaactt gcaaatgacc cacttgaaat
     4261 actaatcggc gataaaagaa tcgcttatgg cgaggtagta atcgtcgatg gaaatttcgg
     4321 agttcaaatc acagaaattg gctctaaaaa agaaagatta gaacaactaa gataaaaagt
     4381 tttagcctgc aaattaagaa taataaatat aaataaatta aaactaaaac aaactaaaag
     4441 ggctgaaatc aaaatgtaaa gattttggag tgtttaactt aaaaggtttt agctcttttt
     4501 taggagcaac aattaaagca taaccgcctt tattatatct atcccaaata ctaaaaaatt
     4561 gatttttgga acttatatat tctccatgac ttggatcaag cacttgtaaa taattacctt
     4621 tatgattaat aattaccgca aaatgtggaa agcgtggatc atcttcaatt tttacaagca
     4681 ttggaatatt tacaagttta tccaagtttt ctctattgat ttgatatgaa ttgctttgaa
     4741 agcctagttt tttaactgca tcgcttaaat ctgcaaagct taccatatcc gtataaagtt
     4801 cttgtccgct cataatcttt aaaagttcaa gttcatcaaa ctttttttga tcatcaagta
     4861 tattgagtaa agttgccaaa gatgaagcac cacaagattg ctcataagtt tgccttatta
     4921 ctctttcgtt tttaatttct tgataagact taactaccca ttcggctttt gtactcaaag
     4981 caagaatggg taaaaataat aaaattttta gaattttttc cataagctta tcccaaatat
     5041 gctatcagga gaagcagagc ttcctccaaa actagcatta acagaaactg cggtatctga
     5101 attaatgcta taagtagaac ctaaacttaa agttggaata gaacgcactt cagaattttg
     5161 ataaccattg attttttgtt tcatttgaaa tctttgctct gctcctaaat ctaaagtaat
     5221 tttaggactt agaataatag ataaatcccc gcccacataa atactatttc catactctat
     5281 tttaagggtt ttaaattttc ttgattgatt ataaccaaat cctgtataaa tactataaac
     5341 tacaggatcg ctatatcccc ttaaactagc ttgtaagctt tgtgatttta gataaaagtt
     5401 tttggtttga ttgattgctt tttctctttg aacaactgca gtttgaaagg taatttgtgg
     5461 aattaaatct gcaatgctat cgcctgtata aataaaacct agccataaac tatcaaaacc
     5521 tattctgttt ttactagaat actcatttgt aaaaaagttt gtatattcct gccttgcata
     5581 acttccgccc cctgaaataa gtatgtcaaa cttaggtgtt agggtataaa tgaaagtttg
     5641 agttaaaaac acctgctttg tatcattcca aattgtagga tctccgccta ttgttatatt
     5701 aggataaaga gaatacgagt ttgcatttcc tgtgctaagt aaagaaaagc ttgtaat
//
LOCUS       DARAII010000111         5652 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.111, whole genome shotgun sequence.
ACCESSION   DARAII010000111 DARAII010000000
VERSION     DARAII010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5652
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.111"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..414
                     /gene="rplB"
                     /locus_tag="SB143_001626"
     CDS             <1..414
                     /gene="rplB"
                     /locus_tag="SB143_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEF9750142.1"
                     /translation="TIVHNVELKPGKGGQMIRSAGAYAQLMGKEEKYVILRLASGEMR
                     QVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIRPQTRGSAMNPVDHPHGGGEGKKN
                     SGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK"
     gene            416..697
                     /gene="rpsS"
                     /locus_tag="SB143_001627"
     CDS             416..697
                     /gene="rpsS"
                     /locus_tag="SB143_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEF9750143.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTIIPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            708..1115
                     /gene="rplV"
                     /locus_tag="SB143_001628"
     CDS             708..1115
                     /gene="rplV"
                     /locus_tag="SB143_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEF9750144.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVVVKSCRVDAGAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKTEAKKAVAKKTPVKKTSTKKVTAEKES"
     gene            1115..1816
                     /gene="rpsC"
                     /locus_tag="SB143_001629"
     CDS             1115..1816
                     /gene="rpsC"
                     /locus_tag="SB143_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEF9750145.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLQKGLQTEKTE
                     ESAPAKKQRRTRRSK"
     gene            1819..2244
                     /gene="rplP"
                     /locus_tag="SB143_001630"
     CDS             1819..2244
                     /gene="rplP"
                     /locus_tag="SB143_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEF9750146.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            2231..2416
                     /gene="rpmC"
                     /locus_tag="SB143_001631"
     CDS             2231..2416
                     /gene="rpmC"
                     /locus_tag="SB143_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEF9750147.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     EVRKDIARINTAINALK"
     gene            2426..2677
                     /gene="rpsQ"
                     /locus_tag="SB143_001632"
     CDS             2426..2677
                     /gene="rpsQ"
                     /locus_tag="SB143_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEF9750148.1"
                     /translation="MAFKREIQGVVVKIAGEKTASILVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            2677..3045
                     /gene="rplN"
                     /locus_tag="SB143_001633"
     CDS             2677..3045
                     /gene="rplN"
                     /locus_tag="SB143_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEF9750149.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            3045..3278
                     /locus_tag="SB143_001634"
     CDS             3045..3278
                     /locus_tag="SB143_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEF9750150.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            3282..3827
                     /gene="rplE"
                     /locus_tag="SB143_001635"
     CDS             3282..3827
                     /gene="rplE"
                     /locus_tag="SB143_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEF9750151.1"
                     /translation="MMRLKEKYDQSIKPALVKEFDIKNPMLIPAIEKIVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMFAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKEAQKLLELIGVPFTKGK"
     gene            3829..4014
                     /locus_tag="SB143_001636"
     CDS             3829..4014
                     /locus_tag="SB143_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003948630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEF9750152.1"
                     /translation="MAKKSMIAKAARKPKFKVRGYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            4024..4419
                     /gene="rpsH"
                     /locus_tag="SB143_001637"
     CDS             4024..4419
                     /gene="rpsH"
                     /locus_tag="SB143_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEF9750153.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRVSKPGRRVYKGKEEIKRFKNGYGT
                     IVVSTSRGVLANDEAYKAGVGGEILCTIW"
     gene            4497..5033
                     /gene="rplF"
                     /locus_tag="SB143_001638"
     CDS             4497..5033
                     /gene="rplF"
                     /locus_tag="SB143_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEF9750154.1"
                     /translation="MSRIGKQPIAIPSGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIIVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEITVDKNNVIIKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            5043..5399
                     /locus_tag="SB143_001639"
     CDS             5043..5399
                     /locus_tag="SB143_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEF9750155.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIATEFAKVLKAKQIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            5411..>5652
                     /gene="rpsE"
                     /locus_tag="SB143_001640"
     CDS             5411..>5652
                     /gene="rpsE"
                     /locus_tag="SB143_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="located at the back of the 30S subunit body where
                     it stabilizes the conformation of the head with respect to
                     the body; contacts S4 and S8; with S4 and S12 plays a role
                     in translational accuracy; mutations in this gene result
                     in spectinomycin resistance; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEF9750156.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIA"
BASE COUNT         2180 a          749 c         1213 g         1510 t
ORIGIN      
        1 actattgttc ataatgttga gttaaagcca ggcaaaggtg gtcaaatgat ccgctcagca
       61 ggagcttatg cgcaacttat gggtaaagaa gaaaaatatg ttatcttaag acttgcaagc
      121 ggtgaaatga gacaagttct agctgaatgt atggcaagta taggcgaagt aggtaacgaa
      181 gaatgggcaa atgtgactat cggtaaagca ggtagaaatc gccatagagg tatccgccca
      241 caaactcgtg gttcagctat gaacccagta gatcacccgc acggtggggg tgaaggtaag
      301 aaaaattcag gccgtcatcc agtaactcca tggggtaaac caaccaaagg tgcgaaaact
      361 cgtcgtaaaa aagctagcga taagctaata atttcaagaa gaaaaggaaa gtaagatggc
      421 tagatcacta aaaaaaggtc cttttgttga tgatcatgta atgaaaaaag tcatcgctgc
      481 taaaaaggct aatgataata aacctattaa aacttggtct agaagaagta ctatcattcc
      541 tgatatgata ggtttaactt tcaatgttca taatggcaaa agttttattc ccgtttatat
      601 cactgaaaat catatcggtt ataaacttgg cgaatttgct ccaacacgca catttaaagg
      661 ccataaaggt tctgtgcaaa agaaaattgg taagtaaggg ataagatatg agtaaagcat
      721 taattaaatt cataagatta tctccaacta aagcaagatt gattgctaga gaagttcagg
      781 ggatgaatgc agaattagct atggctagtt taaaatttat gccaaacaag ggtgccaaat
      841 atatcgcaaa tgcaatttca agtgcagtag caaacggcgg ttttgaagcg aacgaagtag
      901 tggtaaaaag ttgtcgtgta gatgctggtg ctgtattaaa aagatttaga ccacgtgcta
      961 gaggaagtgc aagccgtatt agaaaaccta cttcacatat cttagtagaa gtagcgaaag
     1021 cggaagttaa aactgaagca aaaaaagcag tagctaaaaa aactcctgtt aaaaaaacaa
     1081 gtactaaaaa agtaacggca gaaaaggaaa gctaatggga caaaaagtaa atccaatcgg
     1141 tctaagacta ggaattaata gaaactggga atcaagatgg tttccaacta aggcaaattt
     1201 agtggaaaat atcggtgaag attacaaaat cagagctttc ttaaaaagaa aactttatta
     1261 tgcgggaatc agccaaattt tagtagaaag aactgctaaa aagcttcgcg taactgttgt
     1321 agctgcaaga ccaggtatta tcattggtaa aaaaggtagc gatgttgata atttaagaaa
     1381 agaattgcaa gatttaatcg gtaaagatgt aaatatcaac atcaaagaag aaagaaaagc
     1441 gggtgcttca gctcaacttg ctgctgaaag cgttgcaact caacttgaaa aaagaatcgc
     1501 ttttagaaga gcaatgaaaa aagtaattca aggcgcacaa aaagcaggtg ctaaagggat
     1561 taaagtttca gtttctggtc gtttaggcgg tgctgaaatg gcaagaactg aatggtatct
     1621 tgaaggtcgt gtgccacttc atactttaag agcaaaaatc gattacggtt ttgcagaagc
     1681 tagaactact tatggaaaca taggtgttaa agtttggatc tttaaaggtg aagtattgca
     1741 aaaaggctta caaactgaaa aaacagaaga aagtgctcca gctaaaaagc aaagacgcac
     1801 aagaaggagt aaataatcat gttaatgcca aaaagaacta aatatcgcaa aatgatgaaa
     1861 gggcgtaaca gaggttatgc taatcgtgga actgaattta cttttggtga atttgcatta
     1921 aaagcaactg aagcaggacg cattaattca cgccaaattg aagcagcgcg tatcgcttta
     1981 actcgttttg ttaaaagaca aggaaaaact tggattagag ttttcccaga taagcctttg
     2041 acaaaaaaac ctttagaaac tcgtatgggt aaaggtaaag gtgctgttga ggaatgggta
     2101 atgaatatca agccaggtcg tatcatttat gaaatggcag gagtaagcga agaaatggca
     2161 agagaagcat tgactttagc tatgcataaa cttccattta aaactaagtt tgttacaaga
     2221 gagagccaaa atgaaatata ctgagattaa agataaaaca gcagctgagc ttgcaacaat
     2281 gctaaaagaa aaaaaggtgc ttttattcac tttaaaacaa aagctaaaaa caatgcaact
     2341 tactaatcca aaagagatta gcgaagttag aaaagacatt gctagaatca atacagcaat
     2401 taacgcttta aaataaggat aaaaaatggc atttaaaaga gaaatacaag gcgttgttgt
     2461 gaaaatcgca ggtgagaaaa cagcgagtat tttggttgaa agaaaagtgg ttcatccaag
     2521 atatagaaaa attgttaaac gctttaaaaa atatctaatt catgatgaga gaaatgaagt
     2581 taaagtgggt gatactgttg ttgcagtaga atgcagacca ctttcaaaaa gaaaatcatt
     2641 tcgcttaaaa tctgtattag ctacaggagt tgagtaatga ttcaaagttt tacaagactt
     2701 gcagttgctg acaatagcgg tgcaaaagaa ttaatgtgta ttaaagtttt aggtggtagt
     2761 aaaagaagat atgctactgt aggcgatgta attgttgcat ctgtaaaaaa agctttacca
     2821 aatggtaagg taaaaaaagg tcaagtagta aaagcagtta tcgttagaac taaaaaagaa
     2881 attcatagag ataatggttc tttgattcgt tttgatgaaa atgctgcagt tattcttgat
     2941 aacaaaagag aacctatcgg aactcgtatc tttgggccag tgggtagaga agttagatat
     3001 ggtggcttta tgaaaattgt ttcactagca ccggaggtat tataatggcg gttaaattaa
     3061 aaatcaaaaa aggtgatagc gttaaagtta tcacaggtga tgacaaaggt aagacaggta
     3121 aagtgttagc agtatatcca aaaacactta aagtagttgt tgagggatgt aagattgcta
     3181 aaaaagctat aaaacctagc gagaaaaacc caaatggtgg ttttatcaat aaagaaatgc
     3241 caatggatat ttccaatgtg gcaaaagttc aggagtaagc gatgatgaga ttgaaagaaa
     3301 aatacgatca aagcatcaaa cctgctttgg taaaagaatt tgatattaaa aatcctatgc
     3361 ttatccctgc gatagaaaaa atcgttatta gcgtaggtgc gggtgagctt gctaaagatc
     3421 aaaaagtatt gcaaaatgtt gcagatacta tttctttgat agcaggacaa aaagctgtga
     3481 tcaccaaagc taaaaaatca gttgcaggat ttaaagtgcg tgaaggtttt cctgtaggtg
     3541 taatggtaac tttaagaaaa gaaaatatgt ttgcttttct tgataaatta atttctattg
     3601 ctttaccaag agtgaaagac tttagaggtt taagtagaga tggttttgat ggaagaggaa
     3661 attacaattt cggtcttgat gagcagttga tgttcccaga agttgagtat gataaaattt
     3721 taagaactca tggtatgaac atttctatag ttacaacagc acaaaacgat aaagaggcac
     3781 aaaagttgtt agaacttatc ggtgtgccat ttacaaaagg aaagtaagat ggctaaaaaa
     3841 tcaatgattg caaaagcggc acgcaaacct aaattcaaag taagaggcta tacaagatgc
     3901 caaatttgtg ggcgtccgca ttcggtttat agagattttg gaatttgtag agtttgccta
     3961 agaaaaatgg gtaatgaagg cttgattcca ggtcttaaaa aagcaagctg gtaaggaaat
     4021 aaaatgataa atgatataat ttcagattca ctaacaagaa ttcgcaatgc cggaatgaga
     4081 aagcttgaaa caaccaagct tttgcattct aaagttgttg aagctttagt tggaattttc
     4141 caagctaaag ggtatattga aagttttaat gttatcgaag aagataaaaa gaaatttatc
     4201 aatgtagttt taaaatacga tgaaaaaggt aaaagcgtta ttaacgaact taaaagagtt
     4261 tctaaaccag gtcgtcgtgt ttataagggt aaagaagaaa ttaaaagatt taaaaacggt
     4321 tacggtacta tcgtagttag cacaagtcgt ggcgttttag caaatgatga agcttataaa
     4381 gcaggtgttg gcggcgaaat tttatgtacc atttggtaaa aatctgcttt ttatggcatt
     4441 gggtatccat tcttttaaaa aagtagaaat atcctagaca aataaaaagg aaaaatatgt
     4501 ctcgtatagg taaacaacca atcgctatcc ctagtggagt agaggttaaa ctagaaggaa
     4561 atttgcttaa atttaaaaaa ggaaatttag caaaagagct tgatacaaaa gcaaatgtaa
     4621 atgttgagat taaagataat aacattcttt tctctcctaa aggtgaagat agacaaagta
     4681 gagcatattg gggaacttat agagctttag cttacaatat cattgtaggc ttaactcaag
     4741 gtttttcaaa aactcttgaa atcaacggag tgggttataa agctgcttta aaaggcaaag
     4801 ttttagaatt aagccttggt ttttcacatc ctatcaacta tgatattcca gaaggaattg
     4861 aaatcactgt ggataaaaac aatgttatca ttaaaggaag cgataaacaa gtagtaggac
     4921 aagttgctgc tcaaattcgt gaatttagac cacctgagcc atataaagga aaaggcgtta
     4981 agtattctga tgaacgcatt atccgcaaag ctggtaagac atctaaaaag taaggatagg
     5041 caatgagagc aaatgtacta aaaagaaaac taactttaag aattaaaaga aaaaaaagaa
     5101 ttagagcaaa aatttcagga tgtgaaaact tcccaagaat ttctgttttt aaatcaaata
     5161 gaactcttta tatccaagcg attgatgatg ttaaagctgt aactttagca gcagtagatg
     5221 gacgcaaact tggcgttaaa gcaaacaaag aaggtgctaa aaaaatcgct actgaatttg
     5281 ctaaagtttt aaaagctaag caaatagaac aagctgtgtt tgatagaaat ggttatgtat
     5341 atcacggagt aattgcagca ttagctgaat ctttaagaga aaatggcatt aggctataag
     5401 gggtaaatcg atggaaaaat ataatagaga agaatttgaa gaagtaatcg tcgatatcgg
     5461 cagagttact aaggttgtta aaggtggtag aagatttaga tttactgctt tagttattgt
     5521 tggaaaccgc aaaggtttag taggtgttgg ttatggcaag gctaaagaag ttcctgatgc
     5581 tattcgcaaa gcagttgatg atgcatttaa aaatatcgtt gaagtaaaaa ctaaaggatc
     5641 aactattgct ca
//
LOCUS       DARAII010000112         5632 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.112, whole genome shotgun sequence.
ACCESSION   DARAII010000112 DARAII010000000
VERSION     DARAII010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5632
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.112"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1106)
                     /locus_tag="SB143_001641"
     CDS             complement(<1..1106)
                     /locus_tag="SB143_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEF9750157.1"
                     /translation="MKPVDEELLLEKLIEDIKNCRDLTRAKELLFSICQEDAIVEKAV
                     DYCIKSHEGQVRKSGEPYAVHPILVASLVAFLSENKATILAALLHDVIEDTQCTEEEL
                     RDQFGSEVLKLVLGLTKIVEIREDNLIPSKSKKSLTKSALTFRNMLLASIEDVGVLVV
                     KLCDRLHNMLTLDALREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNDQQMQLGLNEFISKIELLFLSNGFRQGSFQIQKRIKHSYSIYLKMQ
                     RKGVGIEEVLDLLGVRILVENVSDCYLALGVLHTNFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDTKNIIEAQIRTFDMHKIAEFGIAAHWKY"
     gene            complement(1090..1314)
                     /locus_tag="SB143_001642"
     CDS             complement(1090..1314)
                     /locus_tag="SB143_001642"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEF9750158.1"
                     /translation="MENRIEEIAAKALERMGDDRYRLSLVVAKRAEQLADGAAPLVDI
                     DKSKLKFADIALYEIAENKITLEGLVETSR"
     gene            complement(1328..2044)
                     /locus_tag="SB143_001643"
     CDS             complement(1328..2044)
                     /locus_tag="SB143_001643"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEF9750159.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIANEIKELVKNNI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESCGLDVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVIFAAGTGNPYFTTDTTAILRAVEIDAQMVIKA
                     TKVNGVYDKDPNKFDDAVFLQTLSYDEAMQDNIKVMDDTAIALAKDNSLPIVVCNMFE
                     EGNLLKIIQGDNSLCSIVKN"
     gene            complement(2096..3298)
                     /locus_tag="SB143_001644"
     CDS             complement(2096..3298)
                     /locus_tag="SB143_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEF9750160.1"
                     /translation="MRKILIFLCFFLLSNEMHANAISEKTKNLEENKRIQEQVNKKLE
                     DLANDILSGEKSLKELSAQIETLNSQTLKLEARAKAQNKDLNLLTSQNTDLLKNKANM
                     EGKLIALMAKDFAHDLPIPQGYVESKESFMAFEVLGGLDKILQDEIFKLSKDYEDISK
                     LIDDKQEQIKKINEDLKDYNTQLAKLQNLRQKQVSEIKKQKTDRAIYAKKLENLQDQQ
                     DELRKTLNQLKIIESKQEDKKQSQKTASDSKIVNNTQKIRQIGSSYQGSSTKRYTGKK
                     TIAPLESFTVKQKFGNYIDPVYNIKIFNENVVLRSNKADAVVKSVLDGKIVFAKDTSM
                     LARVVIVEHDNGIHTIYAHLDKIAPNIKVGKNVKKGAVVGRIKNDLTFEVTQKNFHIN
                     PLELISLN"
     gene            complement(3295..4101)
                     /locus_tag="SB143_001645"
     CDS             complement(3295..4101)
                     /locus_tag="SB143_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9750161.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILLTNATLRHYEELVNKDYNI
                     IVASSAELDKNVIKTKLSSFSSLEPLDPKDLIDRLKNDISDKNLKVLRDSLPKFYSIK
                     LDYLPTQNELNTIKNQLLSIPSISKVETFAKTHDKVYSLLVLMKFVFWLFLFIIILLS
                     FVLFLKQMRIWLFEHTERVEIMCLFGAPFWFRSFMLYKIVVLDCFIAFIILFVFFTQI
                     YNLSIVQDSLKAVDIILPPINFIVHLGVIFLVTLFICLFCVNSVMFRVKK"
     gene            complement(4088..4753)
                     /locus_tag="SB143_001646"
     CDS             complement(4088..4753)
                     /locus_tag="SB143_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9750162.1"
                     /translation="MSNLIQAHKLSLGYDELVIKEASFTFKDDDFVFITGKSGSGKST
                     LLKSFYGDLELLSGQLEVCGSFMRKIGNSELLKLRQQIGIIFQDYRLIQEYSVEKNVM
                     LPLMIKGYSKKVCHDQASKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVVVVTHRIPSNLRLNYRRFNIENGNMN
                     EIF"
     gene            complement(4802..>5632)
                     /gene="trmB"
                     /locus_tag="SB143_001647"
     CDS             complement(4802..>5632)
                     /gene="trmB"
                     /locus_tag="SB143_001647"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEF9750163.1"
                     /translation="EIGFGSGRHLLYQAKNNPQILILGIEIYNPAITQVAKLARAQGI
                     DNILLVQSDARLLLSVLRSDSIEKIFLHFPVPWDKKPHRRVVSKAFCKECARVLTTQG
                     VFELRTDSYEYFDFTFKEFLEFSSPQFSIRKNENLEISSKYEDRWKRQEKDIYDLWVW
                     NLDKEEKNVLSEEFDFSDIHLSKNDLMLLEKNFENFTLKKEDFFLHFENIYKQGESLL
                     LKIAFGAFNKPEHCYLHIGEAISFVFKEPFKIQENLKAIKELKKSVKFHFNMKHFLEN
                     "
BASE COUNT         1841 a         1046 c          731 g         2014 t
ORIGIN      
        1 ttgtatttcc aatgtgcagc tataccaaat tcagcgattt tatgcatatc aaaagtacga
       61 atttgtgctt cgataatatt ttttgtatca aaaagagtgg tatgtatagt ttgatagcca
      121 ttttgttttg gtaaagctat gtaatcttta aaacgcgaaa ccaagggatt aaaatttgta
      181 tgcaaaaccc ctaaagccaa ataacaatcg ctcacatttt caaccaaaat tcgtacacca
      241 agcaaatcaa gcacctcttc tatacccaca ccttttcttt gcattttaag atagatagaa
      301 taactgtgtt tgatgcgttt ttgaatttga aaacttcctt gcctaaagcc attgctaaga
      361 aataaaagct cgattttaga aataaattca ttaagtccta gttgcatttg ctggtcgttt
      421 gaattaatat aattatcgat aagcttatac tcatcaggca tcaaatactt aaagcttaaa
      481 tcttctaaat aattcttaat actagaaatt ccaagtctat gtgctatggg tgcataaacg
      541 accaaagttt cttcgctaat acgcttttgc ttatcttctc ttaaagcatc taaggttagc
      601 atattgtgaa gtctatcgca aagttttacc accaaaaccc cgacatcttc aatacttgct
      661 aaaagcatat ttctaaatgt aagagcggat ttggttaaac ttttttttga ttttgaagga
      721 atgagattat cttctctgat ttctacaatc tttgtaagac ctaaaacaag ctttaaaact
      781 tcggatccaa actgatccct aagttcttct tcggtacatt gcgtatcttc gatcacatca
      841 tgtaaaagcg cagccaaaat tgtggctttg ttttcactta aaaaagcaac caagcttgca
      901 accaagatgg gatgaactgc ataaggttct ccgctttttc taacctgacc ttcgtgggac
      961 tttatgcaat aatccacagc tttttctaca atagcatcct cttgacaaat gctaaaaaga
     1021 agttcttttg ctcttgttaa atctctacaa tttttaatat cttcaatgag tttttcgagc
     1081 aataattcct catcgactgg tttcaactag accctctaaa gtgattttat tttctgctat
     1141 ctcatataaa gcaatatctg caaattttaa tttactttta tcaatatcca ctaaaggtgc
     1201 tgcaccatcg gctaattgtt ctgctctttt tgcaacaacc aaagaaagac ggtagcgatc
     1261 atctcccatt ctttctagag ctttagctgc tatttcttcg attctgtttt ccattagttc
     1321 tccttgatta atttttaact atagaacaaa gactgttatc gccttgtata attttaagca
     1381 aatttccttc ttcaaacata ttacatacaa ctataggcaa agaattatcc ttagctagag
     1441 cgattgcagt atcatccata actttaatat tatcttgcat tgcctcatca tagcttaggg
     1501 tttgtaaaaa tactgcatca tcgaatttat taggatcttt atcataaact ccgtttactt
     1561 ttgttgcttt aataaccatt tgtgcatcaa tctcaaccgc tcttaagata gctgttgtat
     1621 cggttgtaaa ataaggattt cccgttcctg cggcaaagat tacaacccta cctttttcta
     1681 aatgtctttg agctcttctc ataatataag tttcacaaaa agcttccatt tgaatcgcac
     1741 tttgtactct cacatcaagt ccgcaacttt ctaaagcctc ttgaatagca atagcattaa
     1801 taacagtcgc aagcattccc atgtgatcgc cgcttgtgcg tttgataaga ccgcctttgg
     1861 ctgctgaaac accgcgaatg atatttccac cccctatcac tatgcctact tctatattgt
     1921 ttttaaccag ttctttaatc tcatttgcta tgaattttaa aatagaattt tcaataccaa
     1981 aaccattttc tccggctaaa gcttctcctg aaaattttac taaaactctt tttctctctt
     2041 gcattttttc tccttaatca acttgaaatt atattgaaaa ttgcattaaa attagctaat
     2101 ttaaactaat aagttctaaa ggattgatat gaaaattctt ttgtgttact tcaaaagtta
     2161 aatcattttt tatcctaccc actaccgcac ctttttttac atttttaccg actttgatat
     2221 taggtgctat cttatctaag tgtgcataaa tagtatgaat tccattatca tgttcgacta
     2281 tcacaactct tgctagcata cttgtatctt tggcaaaaac tatctttcca tctaaaacac
     2341 ttttcactac agcatcagct ttattgcttc ttaaaacaac attttcattg aaaattttaa
     2401 tattataaac aggatcgata taatttccaa atttttgttt tacggtaaac gattctaaag
     2461 gggctatagt ttttttacct gtataacgct tagtagagct tccttggtag ctagatccaa
     2521 tttggcgaat tttttgagta ttattgacaa ttttgctatc gctggcagtt ttttgacttt
     2581 gttttttatc ctcttgcttg ctttctataa tttttaattg atttaaggtt tttcttaatt
     2641 catcttgctg atcttgcaaa ttctcaagtt ttttagcata aattgcccga tcggtttttt
     2701 gttttttaat ctcactgact tgcttttgtc ttaaattttg aagttttgct aattgggtat
     2761 tgtaatcttt taaatcttca ttaatttttt taatttgttc ttgcttatca tcgattaatt
     2821 tacttatatc ttcataatcc ttagaaagtt taaaaatttc atcttgcaaa attttatcca
     2881 agccacccaa aacctcaaaa gccataaaac tttccttgct ttcaacataa ccttgcggta
     2941 taggcaaatc atgggcaaaa tccttagcca tcaaggctat aagtttgcct tccatattgg
     3001 ctttattttt caaaagatct gtgttttgac ttgtgagtaa atttaagtct ttattttgtg
     3061 ccttggctcg agcttcaagc ttaagagttt gagaattaag agtttcaatt tgagcactta
     3121 actctttcaa gctcttttct ccacttaata tatcattggc taaatcttca agctttttat
     3181 ttacctgctc ttgaatgcgt ttattttctt ctaaattctt agttttttca ctaatggcat
     3241 tagcatgcat ttcattggac aataaaaaaa aacaaagaaa aattagaatt tttctcattt
     3301 tttcacccta aacatcaccg aatttacaca gaataaacat ataaacaaag tcactaaaaa
     3361 aatcacgccc aaatgcacga taaaattaat aggaggcaag ataatatcaa ccgcttttag
     3421 gctatcttgg actatagaaa gattataaat ttgtgtaaaa aatacaaata aaataataaa
     3481 agcaataaaa caatccaaaa ccacaatctt atatagcata aaagatctaa accaaaaagg
     3541 cgcaccaaac aaacacataa tctctacgcg ttcagtgtgt tcaaaaagcc aaattctcat
     3601 ttgttttaaa aacaaaacaa aagaaagcaa gataatgata aataaaaaca accaaaatac
     3661 aaatttcatc aaaacaagca aagaataaac cttatcatgc gttttagcaa aagtctcgac
     3721 cttactaata cttggtatgc ttaaaagctg gtttttaatg gtattaagct cattttgtgt
     3781 aggcaaataa tcaagcttga tgctataaaa tttaggtaaa gaatctcgta aaacttttaa
     3841 atttttatca gaaatatcgt tttttaaacg atctatcaaa tctttaggat ctaatggctc
     3901 caaactagaa aaggaagaaa gtttggtttt gataacattc ttatcaagct cagcagagct
     3961 tgcaacgatg atattatagt ccttattgac aagctcttca taatgtctta aagtagcatt
     4021 tgtaagtaaa ataaactcaa aagcaaacat cataaaaagc aaaggcaaaa tcaaagataa
     4081 gtgggtttta aaaaatttca ttcatatttc cattttctat attaaaacga cgataattca
     4141 gtcttaaatt gctcggaatt ctatgcgtaa ccactacaac acaagtacct aaaagctctc
     4201 tagctgattt taaaagtgtc caaatgatat ctgaagaata ctcatctaaa tttcctgtag
     4261 gttcatcgca aagcaaaagc ttaggattgt gtgctaaagc tctagccata gctactcttt
     4321 gttgctctcc tccgcttagt tgattgggca atttatccgc tttaaatgtc aaatttacat
     4381 gctttaaaag cttacttgct tgatcatgac aaactttttt actataacct ttaatcataa
     4441 gaggaagcat cacatttttt tctacgctgt attcttgtat aagtctataa tcttgaaaaa
     4501 taataccaat ttgctgacgc aattttaaaa gctctgaatt tccaatcttt cgcatgaaag
     4561 atccacatac ttcaagctgc cctgaaagga gttctaagtc cccgtaaaaa gattttaaaa
     4621 gagtgctttt tccacttcca cttttacctg taataaaaac aaaatcatca tctttaaaag
     4681 tgaaactggc ttctttaata accaattcat cataacctaa agaaagttta tgcgcttgaa
     4741 ttaaatttga catcccatcc tctttgaatt tcaaaattcg taaattatgc tttatttttg
     4801 cttaattttc aagaaaatgt ttcatattaa agtgaaattt aacacttttc ttaagctctt
     4861 ttatagcttt taaattttct tgtatcttaa aaggctcttt aaaaacaaaa ctaatcgcct
     4921 ctcctatatg taaataacaa tgctcaggct tattaaaagc accaaaagct atttttaata
     4981 ataaactttc cccttgctta taaatatttt caaaatgcaa aaagaaatcc tcttttttta
     5041 aagtaaaatt ttcaaaattt ttctctaaaa gcatcagatc atttttactt aaatgtatat
     5101 ctgaaaaatc aaattcttct gataaaacat tcttttcttc tttatctaaa ttccacaccc
     5161 aaagatcata aatatctttt tcttgtcttt tccatctatc ttcgtatttg ctagaaattt
     5221 ctaaattttc attttttcta atgctaaatt gcggtgatga gaattctaaa aattccttaa
     5281 aagtaaagtc aaaatactca taactatccg ttctaagctc aaaaacccct tgggttgtaa
     5341 gcactcttgc acattctttg caaaatgctt tagaaacaac acggcgatga ggctttttat
     5401 cccaaggaac tgggaaatgt aggaaaattt tttctataga atcagaccga agaacactca
     5461 acaaaagtct agcatcactt tgaactaata agatattatc aataccttga gcgcgtgcaa
     5521 gcttggctac ctgcgtgatg gctggattat aaatttctat cccaaggatt aaaatttgag
     5581 ggttgttttt agcttggtaa agcaaatgtc ttcctgaacc aaaaccaatt tc
//
LOCUS       DARAII010000113         5563 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.114, whole genome shotgun sequence.
ACCESSION   DARAII010000113 DARAII010000000
VERSION     DARAII010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5563
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.114"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..477)
                     /locus_tag="SB143_001648"
     CDS             complement(<1..477)
                     /locus_tag="SB143_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HEF9750164.1"
                     /translation="MNTPKWTRYDTRWVLSLFGTAVGAGILFLPIKAGVGGFWPVVVM
                     ALIIFPMVYLSHRALSRFVSQANGNDKDITHAAEEYFGRKVSIFISVLYFFAIFPICL
                     AYCVGITNTFESFIYHQFLPLLNSEGVFADIIRAMYEVSTDDKEKVVASLFPFYRLL"
     gene            complement(747..1163)
                     /locus_tag="SB143_001649"
     CDS             complement(747..1163)
                     /locus_tag="SB143_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002833266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEF9750165.1"
                     /translation="MKLKLGLAALLGATVLFARDIIVPASELPRNAQDFISKNFKTAQ
                     IALVKKDIDSYDVTLNDGTEIDFIITGEWKDVDGKYKALPNSILPNIMPKISASSNAQ
                     IIEVSREINGYKFELSNQLKIYTDAQGNILGQKFDY"
     gene            complement(1232..1969)
                     /locus_tag="SB143_001650"
     CDS             complement(1232..1969)
                     /locus_tag="SB143_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEF9750166.1"
                     /translation="MQENHNFISFVLLDEAKFDFLKLKKILEDDFDIWIADENFTQDG
                     VIFSFKNMIVTLNLIKNPIPNNEAEYYANFNFVWKDALEQTQKHKAHLLVSVLSQSES
                     KLDQAKLFTQISSACLQDEHTLGFYTGGVVLEPKFYIENAKMLKENRLPIYNWIYVSV
                     YPGDNGNNAYTYGLRNFDKLELEVCDANIEEKELFFTLYDIILHILTYDLSLKDGDTL
                     KFEDGRILSFKKSQGIGVENESLKIIF"
     gene            2136..2561
                     /gene="exbB"
                     /locus_tag="SB143_001651"
     CDS             2136..2561
                     /gene="exbB"
                     /locus_tag="SB143_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEF9750167.1"
                     /translation="MEFLKDYIDLIIFIILGVMAFIAFWCVIERVLFFRKIDFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVVGIMITFYEMGIAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKVSKNA"
     gene            2554..2943
                     /gene="exbD"
                     /locus_tag="SB143_001652"
     CDS             2554..2943
                     /gene="exbD"
                     /locus_tag="SB143_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEF9750168.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIILSISTFIAHGKIEINLPV
                     SENALSLNNDEKKLSISIDENNIFYLDDKTTDLKGLSDAISSLHKKTIVELKSDKNAK
                     FESFVQIIDLLKAKEHENFQIITEKNR"
     gene            complement(3178..4068)
                     /locus_tag="SB143_001653"
     CDS             complement(3178..4068)
                     /locus_tag="SB143_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750169.1"
                     /translation="MDKLTINDFNVSLPSSQNVTNRKEILELKKEEKDKIPVQDLSSL
                     NSDGVKVVFENKQGELIALNLSDENYSSLQKNFGSYTNYVARNDGSIRLNGEANEFIA
                     NWFENIEDNFNSLSSNLSSNTQDKNIKLNFHTNTITQSMQNLGFKSNDEKIPNDASME
                     KKLNFFIDKDRDKNGKIDDNDVKEPSMGEILKDISKISGRANAMQTIDPQKIYKKDDS
                     GVTIKEKDEKDDKDLLEIAKEKGLSALSADEQAKLKASNPQIFEELQNKSLGNLEQNL
                     KKDLMVQISNNEAIFVNKRV"
     gene            complement(4122..4319)
                     /locus_tag="SB143_001654"
     CDS             complement(4122..4319)
                     /locus_tag="SB143_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750170.1"
                     /translation="MRKLLSVALVACFIGSFAYGKTENNKSPQVRSSCVDYEIRLKRC
                     NSLPTQYQRQMCRLGLFAACK"
     gene            4440..5423
                     /locus_tag="SB143_001655"
     CDS             4440..5423
                     /locus_tag="SB143_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEF9750171.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRGDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGIIGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENELLRNLKTPKYEVIELGDLIGAYSLLSAN
                     ADEKDLELALKIALTYTKHEANKSYELRFKDKSYKSIAFEDKKEINPFFIS"
     gene            complement(5426..>5563)
                     /locus_tag="SB143_001656"
     CDS             complement(5426..>5563)
                     /locus_tag="SB143_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HEF9750172.1"
                     /translation="AGVAFGFRYNLNHLSLNLTASKALHKSSNMPSETIPIYLRASVF
                     F"
BASE COUNT         1967 a          877 c          772 g         1947 t
ORIGIN      
        1 aagcaaacga taaaaaggaa ataaactcgc tacaactttt tctttatcat ctgtgcttac
       61 ctcatacatg gcacgaataa tatctgcaaa tacaccctct gaatttaaaa ggggtaaaaa
      121 ttgatggtag ataaaacttt caaaagtatt ggttataccc acacaatacg ctaaacaaat
      181 tggaaaaatt gcaaagaagt aaagcacaga aataaaaata cttacttttc taccaaaata
      241 ctcttcagcc gcatgggtaa tgtctttatc attaccattt gcttggctta caaaacggct
      301 taaagctcta tgacttagat aaaccattgg aaaaataatc aaagccatca caacaactgg
      361 ccaaaaacca cccacacctg ccttaatggg taaaaataat atccccgcac ccacagcggt
      421 tccaaaaaga gataaaaccc atctcgtgtc ataacgagtc cacttaggag tattcataca
      481 ttttccttaa aatttgatat cgcaaaatta agcttatttt aacacactta ctgggtaaaa
      541 aatctaaatt tctagcattt ttctttaatt tatgtaacat tttgtaaaat attagtctta
      601 ttaaaattat attttaagat ttaatttaat taagttttgg agatggtttt ttatataaaa
      661 aaccatattg gattaacaaa gagaaatttt taaactcatt taaaaatttg gaaacataaa
      721 gtctccaaat ttacatgctt ttagaattaa taatcaaatt tttgtcctaa gatattaccc
      781 tgtgcatcag tataaatttt taattgattg cttaattcaa atttatatcc gttgatttct
      841 ctgcttactt ctatgatttg agcgtttgat gaagcactga tttttggcat aatatttggc
      901 aaaatgctat ttggcagagc tttgtatttt ccatctacat ctttccactc tccagtgata
      961 ataaagtcaa tttctgttcc atcatttaaa gtcacatcat aagaatctat atcttttttt
     1021 actaaagcaa tttgtgcagt tttaaaattc ttagatataa aatcttgtgc atttcttgga
     1081 agttcactcg caggaacaat tatatctcta gcaaaaagca ccgtagcacc caataaagcc
     1141 gctaaaccta attttaattt cattttttct cctttttgtt tgtgttttgg ttgagagaag
     1201 tttaacttat ctttgtgaag tgaatgtgaa actaaaaaat aatttttaaa ctctcatttt
     1261 caacacctat gccttgactt ttcttaaaag aaagtattct accatcttca aattttaaag
     1321 tatcaccatc ttttaaactt agatcataag ttaaaatatg caaaataatg tcatacaaag
     1381 tgaagaaaag ctctttttct tctatatttg catcacaaac ctcaagctct aatttatcga
     1441 aatttctaag accataggtg taggcattat tgccattatc acctggataa acgcttacat
     1501 aaatccaatt ataaataggc aagcgatttt cttttagcat ttttgcattt tctatataaa
     1561 acttaggctc taaaacaact cctcctgtat aaaatcccaa agtatgctca tcttgcaaac
     1621 acgcagatga tatttgagta aaaagtttag cttgatctag ctttgattca ctctgactta
     1681 aaacggatac aagaagatgt gctttatgtt tttgggtttg ctctaaagca tctttccaca
     1741 caaaattaaa attagcataa tattctgctt cgttgttggg tataggattt ttaatcaaat
     1801 ttaaagtaac gatcatattt ttaaaagaaa aaattactcc atcttgagta aaattttcat
     1861 cagcaatcca tatatcaaaa tcatcttcaa gtatcttttt caatttcaaa aaatcaaact
     1921 tggcttcatc aagaagaaca aaagaaataa aattatgatt ttcttgcatg cttttcctta
     1981 agagttaaag tatttaaaaa attataacct aaatttttaa gccaaaggct tgtgaaatta
     2041 tgattattta aaaaattatg ataattaata ttaattataa ttttattttt attgtagtat
     2101 aatcgccaaa atttaatcaa atcatggagt taaatatgga atttttaaaa gattatattg
     2161 atttaattat ctttataatt ttaggagtta tggcatttat agctttttgg tgcgtaattg
     2221 aaagagtatt attttttaga aaaatagatt ttaaaaatta tgaaaatcaa gagcaatttg
     2281 atgatgcaat tagcgagaat ttaactacca tttatattat ttattctaac gctccctaca
     2341 taggactctt aggaactgtt gtagggatta tgattacttt ttatgaaatg ggaatagcgg
     2401 gaaatatcga tgtcaaatcc atagtcgtag gactttcttt agctcttaaa gctacagctt
     2461 taggactttt agtcgccata cctgccttaa tggcttataa tgccttactt cgcaaggttt
     2521 cacttttaag taatgcttat aaggtgagta aaaatgctta aattgcctaa aaatgaaggg
     2581 ttaaatatag ttcctttcat agatataatg cttgttttac ttgctatcat tcttagtatt
     2641 tcaactttca ttgctcatgg caaaattgaa atcaatctac ccgttagcga aaatgctcta
     2701 agtcttaaca atgatgaaaa aaaattatcc attagcattg atgaaaacaa tattttctat
     2761 ctagacgata agactacaga tttaaaaggc ttaagcgatg ctatttcttc gcttcataaa
     2821 aaaactatag tagaattaaa aagtgataag aatgcaaaat ttgaaagctt tgttcaaatc
     2881 attgacttat taaaagctaa agagcatgag aatttccaaa ttataacaga gaaaaataga
     2941 tgaaaaatac tttgtcaaat cacaaatcac aagcttttta tatatctttt ttcttagctc
     3001 tagtttttta attctgctaa tttttgaaaa atagaattaa atagctttgc tttgactcta
     3061 aaacaatcta taacttaaac taatcacaaa agctaaaaaa cctgatacaa aactaataag
     3121 agcgcttaat ctacacccaa agtaaatact ataaatattt catttatttt taaattttta
     3181 cactcttttg ttcacaaata tggcttcatt gttacttatt tgcaccatta aatctttttt
     3241 taaattttgc tctaaattcc ctaaagactt attttgaagt tcttcaaaaa tttgtggatt
     3301 acttgcttta agtttggctt gctcatctgc actcaaagca cttagtcctt tttctttggc
     3361 aatttcaagc aaatctttat cgtctttttc atctttctct ttaattgtga ccccactatc
     3421 atctttttta taaatctttt gtggatctat agtttgcatg gcattagctc tacccgatat
     3481 tttgcttata tcttttaaaa tttctcccat gctaggctct ttaacatcat tatcatcgat
     3541 cttgccattt ttatccctat ccttatctat aaagaaattt aattttttct ccatgcttgc
     3601 atcattgggt attttttcat catttgattt aaagcccaaa ttttgcatac tttgagtgat
     3661 tgtattggta tgaaaattta attttatatt tttatcttga gtattagagc ttaaatttga
     3721 acttaaagaa ttaaaattat cttctatatt ttcaaaccaa ttagcaataa attcatttgc
     3781 ttcgccatta agccttatac ttccatcatt tcgagcaaca taatttgtat aagagccaaa
     3841 attcttttgc aaactactat aattttcatc acttaaattt aaagctataa gttcaccttg
     3901 cttattttca aaaacaacct taacaccatc gctatttaaa ctcgaaagat cttgcacggg
     3961 aattttatct ttctcttctt tttttaattc taaaatttct ttacgatttg taacattttg
     4021 agaacttggt aaagaaacat taaaatcatt gattgttaat ttatccataa taactcctta
     4081 gaaattttaa agcccaagca tttaacttgg acttgtttat tttatttaca agctgcaaat
     4141 aagcccaaac gacacatttg tctttgatat tgagtaggca aagaattgca tcgtttcaat
     4201 cttatttcat aatcaacgca agaacttcta acttgtgggc ttttattatt ctcagttttg
     4261 ccataagcaa aagaaccaat aaagcaagca actagtgcaa cagagagtaa ttttctcata
     4321 gtaaacctcc aaaaataatt gtaatcttaa aattatttga tacaattaca aatttgatat
     4381 cggcaaaaaa atcaaattta tttatactaa caaaattatt ttttaaaaaa ggaacataaa
     4441 tgaaagcatt agctcttttt agcggtgggc ttgatagtat gcttgcaatg aagctcatca
     4501 ctgcacaagg catagaagtt aaagctctaa atatcaacat aggctttgga agcacaagcg
     4561 ataaaagcga aatcatgaaa aaacgtgcag caatggtagg tgcagatttt gaaatgatag
     4621 atgtaagaaa ttcctatctt caagaagtgc tttttaatcc acaatatggc tatggcaaac
     4681 attttaatcc ttgtatagat tgtcatgctt ttatgtttaa aactgctctt gctatgttaa
     4741 aagaagaaaa tgcaagtttt atcatcactg gtgaagtttt aggacaacgc cctatgagcc
     4801 aaagaggtga tgcgatggct aaggttaaaa agctggcttt agatgaggag gatttaatac
     4861 ttcgccctat gtgtgcaaaa aatttgcctt taaccaagcc tgaaagagaa ggttgggtag
     4921 atagagaaaa actcgaaggt attattggaa gaagtcgtaa aagacaactt gaacttgcag
     4981 ctaaatttgg cttagaagac tttgaaagtc ctggaggagg atgcttgctc acgcttgata
     5041 gttttgctaa aaaaattcgc gactttatag aatttgataa agatatgcaa gtaaatgatg
     5101 cgcaactttt aaaatacgga cgccatttaa gactgcctaa tggagctaaa atgatcatag
     5161 gtagaaatga attagaaaat gagctgctaa gaaatttaaa aacacccaaa tatgaagtga
     5221 tagaacttgg ggatttaatc ggtgcttatt ctttacttag tgcaaatgca gatgaaaaag
     5281 atttagaact cgccttaaaa atcgctctaa cttacaccaa gcatgaagca aacaaaagct
     5341 atgaacttcg atttaaagat aaaagctata aaagtatagc ttttgaggat aaaaaagaaa
     5401 tcaatccatt tttcatttct taaacttaaa aaaatacaga agccctgaga taaataggaa
     5461 tcgtttcgct tggcatattc gaagatttat gcagggcttt agaagctgtt aaatttaaag
     5521 aaagatgatt taagttgtat ctaaaaccaa aggcgacacc ggc
//
LOCUS       DARAII010000114         5535 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.115, whole genome shotgun sequence.
ACCESSION   DARAII010000114 DARAII010000000
VERSION     DARAII010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5535
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.115"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1166)
                     /locus_tag="SB143_001657"
     CDS             complement(<1..1166)
                     /locus_tag="SB143_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEF9750173.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNEYAKIIKDEIRKNGCIPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSVE
                     SVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMRSGVTKKGEKISLSS
                     VFEAVGAYEANKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIKNIITQKAIRNAMVVDMAMGGSTNTILHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNTVYMDDIHKAGGVSAVMAEISSRE
                     GHILELDALTITGESLQDRLKNAKIKDETIIRKVDNAYSKVGGLAVLFGNLAEQG"
     gene            1317..1964
                     /locus_tag="SB143_001658"
     CDS             1317..1964
                     /locus_tag="SB143_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rubrerythrin family protein"
                     /protein_id="HEF9750174.1"
                     /translation="MRQYESYKCPKCGNEVEVQNVGGGKLSCCGVEMECITQDLTAIN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            2002..2577
                     /locus_tag="SB143_001659"
     CDS             2002..2577
                     /locus_tag="SB143_001659"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEF9750175.1"
                     /translation="MKTLFEENELLTPFDINLIGIDEAGRGALAGPMMMAACKLHKDL
                     EGLCDSKKLSEKRREELYEIILLHSDYLILAFSSEKIDEIGLSACLKMGLTLIKKHFK
                     TENNFLYDGNTNLGISGIKTQIKADANIKQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKELIAKFGICKLHRKSFKLL"
     gene            complement(2578..4023)
                     /locus_tag="SB143_001660"
     CDS             complement(2578..4023)
                     /locus_tag="SB143_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEF9750176.1"
                     /translation="MGNARGFLDFKRVDFKKIAPKERVLNFKEFTTLLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLIYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGKSVSIKNNELAIIENAFKENLVSPNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKVGGLLMYGIPDMKLDKSIVQRRVDLLKESGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADTAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQSNP
                     WPLKADIFTTDYGLEEAIAVYEKDPREYQKMTKKFLGKDKVESVEACDLKREFKEGKA
                     INVELPNSNQNYKADLVLLAMGFSGSEDAIASNFGVSLDEKNNVKTKNFQTTHEKIFA
                     CGDARKGQSLVVWAIKDGIECALNIHENLAK"
     gene            complement(4033..>5535)
                     /locus_tag="SB143_001661"
     CDS             complement(4033..>5535)
                     /locus_tag="SB143_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HEF9750177.1"
                     /translation="DLKNANKDAKISVKLVSENGIGTVAAGVAKAGANLILVSGYDGG
                     TGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGRDLAIAALLGA
                     EEFGFATAPLIVMGCTMMRVCHLNTCPFGIATQDKELRDRFKGKVDDVVNFMYFIAEE
                     LREYMARLGFERLDDMIGRVDKLRQKPMQGKAGKVNLDKILKSLPTYNRTAVHFKDYK
                     DNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEILKTYGKDALS
                     EDSIQIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAKISNEATFSPE
                     ENIIAGNACLYGATEGEVYLDGIAGERFCVRNSGAKAVVLGTGVHGCEYMTGGLVVVL
                     GDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLSTKDEKELKTMIENHIAYTNS
                     KKAKDILEKFDKKDFFKVMPRDYEKMLEMIELCKDEEDPSLAAFLKITQK"
BASE COUNT         1709 a         1126 c          834 g         1866 t
ORIGIN      
        1 ccttgttcgg ctaaatttcc aaataaaacc gcaagccccc ctactttaga gtaagcatta
       61 tctaccttac gaatgatggt ttcatctttg attttagcat tttttaaacg atcttgtaaa
      121 ctttctcctg tgatggttaa ggcatcaagc tctaaaatat gtccttctct gcttgaaatt
      181 tcagccatta cagcacttac accccctgct ttatggatat catccatata aacagtatta
      241 agtgatggag cgatttttgc aatatgtgca accttgcttg aaataaaatt taaatccttg
      301 atatcaagcg caactcccgc ttctcttgaa atagctagca tatgtaagat tgtatttgtg
      361 cttccaccca ttgccatatc taccaccata gcatttctta tagctttttg ggtgataata
      421 tttttgattt taaatctttc atctaaagcg atttcacaaa ttcttcttgc agcctttctt
      481 aaaagctctt ctctttcttt actaagtgct aagatcgtac catttccttc taaagctata
      541 cccatagctt cacataaagt attcatagaa tttgcagtaa acatacccga gcaagagcct
      601 ccacttgggc aagccgaaca ttctatatct ttaaattctt cttcgctgat tttattggcc
      661 tcatatgctc ctacagcttc aaaaactgaa ctaagactta ttttttcacc ctttttagtc
      721 acacccgaac gcataggacc accgcttaca aaaatagtcg gtacattaac ccttaaagca
      781 cccattagca tacctggagt gattttatca caatttggaa tacaaattaa agcatctaac
      841 tgatgcgcat tcataacgct ttcaactgaa tttgcaatga tttcacgact cggcaaagaa
      901 taaagcatac cctcatgacc catagctatg ccatcatcca cgcctatagt gttaaattca
      961 aaagggatac agccattttt tcgaatttca tcttttataa tttttgcata ttcatttaaa
     1021 aaataatgcc ctggaataat atcaatatag ctatttgcca cacctataaa aggcttgtca
     1081 aaatcctcat cttttaagcc acatgctcta agtaaagagc ggttgggtgc ttttaaatgc
     1141 ccttttttaa tcgcatcact tctcactaaa aactccttaa tattttttta atattataac
     1201 ttaattttta taaaatttac ttgcaagaag taagctttct gtgtataatt ttcatcaatt
     1261 gacaaaagta tttttttata atacaatgct ttttgattat caaaaaggag tacaaaatga
     1321 gacaatatga atcctataaa tgtccaaaat gcggcaatga agtagaagtt caaaatgtag
     1381 gcggtggaaa acttagctgt tgtggtgttg agatggagtg tatcactcaa gatttaactg
     1441 caataaattt gatgaaagct tttgctggag aatcaatggc tagaaataaa tacgatttat
     1501 ttgcggatgt agctgaagaa gaaggatggc atgcggttgc aagacatttt agagaagcag
     1561 cagaaaatga aaaatggcat gcaagagctg aatttaaagc ttatcacgaa atcgttgatg
     1621 gcaaaccttt agaagtaact acaaaaaacc tagtaactgc tgcagaaggt gaaaactatg
     1681 agcacacaac tatgtatcca aattttgcta aaatcgctga agatgagggt aaaaaagcta
     1741 tagcaagatt atttactgcg attggaaaag tagaaataga acacgaaaga gaatacctag
     1801 ctcttaaaaa aatgcttgaa gaagaagaat tctttaatag cgaagtagaa gaactatggg
     1861 tttgtgaggt ttgtggacat atccatcgtg gcaaaaaagc tcctgcagcc tgtcctttat
     1921 gtaaagcacc taaagaatac tttaagcgtg aatttttagg ctaaatcctt gggcgatttt
     1981 tcgccctttc ttagagaaaa tttgaaaact ttatttgaag aaaacgaact tttaactcca
     2041 tttgatatta acttaatcgg cattgatgaa gcaggacgag gtgccttagc aggtcctatg
     2101 atgatggcag cttgtaaact gcataaagat cttgaggggc tttgtgattc taaaaaattg
     2161 agcgaaaaaa gacgcgaaga actttatgaa attatcttac ttcattcaga ttacctcatc
     2221 cttgcttttt cttcagaaaa aattgatgaa atagggctta gcgcttgttt aaaaatgggt
     2281 ttaacactca taaaaaaaca ttttaaaaca gaaaataatt tcttatacga tggcaataca
     2341 aatttaggca ttagcggtat aaaaactcaa atcaaagctg atgccaatat caaacaagta
     2401 agtgcagcaa gcatacttgc aaaggtgagc aaagataggg taatgaattt tttagctaaa
     2461 gattttcctt gctatgagtt tgaaaaaaac aaggcttatg ggacaaaagc ccataaggaa
     2521 ttgatagcaa aatttggaat ttgcaagctt catcgcaaaa gttttaaact tttatgacta
     2581 ttttgctaaa ttctcatgta tatttaaagc acactctata ccgtctttta tagcccaaac
     2641 gactaaagat tgtccttttc tagcatctcc acaagcaaag attttttcat gtgtggtttg
     2701 gaaattcttt gttttgacat tgtttttctc atccaaactt actccaaaat tactagcgat
     2761 agcatcttca cttccgctaa aacccatagc caaaagtact aaatctgctt tatagttttg
     2821 attagaattt ggaagttcga catttatagc cttaccttct ttgaattcgc gttttaaatc
     2881 acatgcttct acgctttcta ctttgtcttt acctaagaat ttttttgtca ttttttgata
     2941 ttctctagga tctttttcat atacagcaat ggcttcttct aaaccataat ctgtcgtaaa
     3001 gatatcagct tttaaaggcc aaggattgct ttggcttctt tgtaaaggtc tttttgggct
     3061 tctttcaaaa cgcactatgg acttagctcc ttgtcttgta gctacagcga tacaatcaac
     3121 acttgtgtcc ccacttccta taaccaagac atttttaccc tttgctgtat cagcaccctt
     3181 acctgttttt agcaaggttt tggtattttg cgttaagaaa tcaagagcaa attcaacacc
     3241 ctttagtttt ctaccctcta tatcaagatc gataggcttg ctcgctcctg tgcaaagtac
     3301 taaagcatca aattctttta aaagtttaga aaccttatct ttgctgtcta tattttcatt
     3361 taccttaaat tctataccgc tttctttgag taaatcaacg cgtctttgaa ctatactttt
     3421 atcaagcttc atatcaggaa ttccatacat taaaagcccg cctactttat cgcttctttc
     3481 aaaaacactt accttgtagc caagtgaatt taaggtatta gcacaagcaa gtccagcagg
     3541 cccacttcct atgacggcga tttttttgcc attgtattgt ttaggtttat ttggacttac
     3601 taaattttct ttaaaagcat tttctatgat ggctagctcg ttatttttga tacttacgct
     3661 ttttccatta atcgcacaca cacaagaatc ctcacaagga gccggacaaa cacggccagt
     3721 aaattcagga aaaggattgg taagatcaag tctttcataa gcttctttcc ataaagaacg
     3781 ataaataaga tcattccatt cagggatgag attgtttaaa ggacagccta catccttgcc
     3841 ttcactcatc acacccgtat ggcaaaatgc taccccacaa tccatacatc gtccgccctg
     3901 aatttcttgt tctttcttgt ctaaaagcgt tgtaaattct ttgaaattta aaactctttc
     3961 tttaggagca atttttttaa aatctaccct tttaaaatct aaaaaacctc ttgcatttcc
     4021 catttttact ccttattttt gtgtgatttt caaaaatgct gccaaacttg gatcttcttc
     4081 atctttgcaa agctcgatca tctctaacat tttttcataa tctcttggca taactttaaa
     4141 aaagtctttt ttgtcaaatt tttcgagtat gtccttagcc tttttagaat tggtataagc
     4201 gatatgattt tctatcatcg tttttaattc tttttcatcc ttagtgctaa gatctttaat
     4261 atccacaagc tcggtattta catgggcttc attgtgtctt ccaaagatat aaaccacacc
     4321 cccactcata cctgcagcaa agtttgcacc cacatcgcca agcactacga caagcccccc
     4381 tgtcatatac tcacaaccat gcacgcctgt tcctaaaact accgctttag ctcctgaatt
     4441 tcttacgcaa aatctttctc ctgctatacc atctaaatac acttcaccct cggttgctcc
     4501 atacaaacaa gcatttcctg cgatgatatt ttcttcaggt gaaaaagtgg cttcatttga
     4561 aattttagca atgatcttac ctccgcttaa acctttacct agataatcat tgctatcgcc
     4621 tataatctca agcttaatac cctttaacaa aaatgctcca aagctattgc ctgcatttcc
     4681 tatggcttta atttgtatgc tatcttcgct taaagcgtct ttgccataag tttttagaat
     4741 ttcacttgaa agcatagtag caaaagtacg gctttgattt cctacctcta aagaaagttt
     4801 gataggctct tttttctcca cagcattttt acaaagtggg agtaaaattc tataatcaat
     4861 cgttttttca agtttattgt ctttatagtc tttaaaatgc acagcggttc tgttataagt
     4921 aggtaaggat tttaaaattt tatctaaatt cactttacct gctttacctt gcataggttt
     4981 ttgacggagt ttatcaactc ttcctatcat atcatcaagg cgttcaaaac caagtcttgc
     5041 catatattct ctaagctctt cagctataaa atacatgaaa ttaaccacat catctacttt
     5101 gcctttaaaa cgatctctaa gttctttatc ttgagtggca ataccaaaag gacaagtatt
     5161 aagatgacaa actctcatca tcgtacaacc cataacaatc aaaggcgcag tagcaaagcc
     5221 aaattcttca gctcctaaaa gtgcagctat agctaaatcg cgtccattca tcagctttcc
     5281 atcagtttct aatcttactc tatctctaag cttgtttaag atcaaagttt gatgcgtttc
     5341 agctaagcct aactcccaag gaattcccgc atgcggtata gaagttctag ggcttgctcc
     5401 tgttcctcca tcataacctg aaacaaggat taaattcgct cctgcttttg ccacacctgc
     5461 agcaactgtt cctataccat tttcgcttac aagttttact gaaattttgg cgtctttatt
     5521 cgcatttttt aaatc
//
LOCUS       DARAII010000115         5493 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.116, whole genome shotgun sequence.
ACCESSION   DARAII010000115 DARAII010000000
VERSION     DARAII010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5493)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5493)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5493
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.116"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            472..750
                     /locus_tag="SB143_001662"
                     /pseudo
     CDS             472..750
                     /locus_tag="SB143_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109042.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
     gene            complement(987..2360)
                     /locus_tag="SB143_001663"
     CDS             complement(987..2360)
                     /locus_tag="SB143_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEF9750178.1"
                     /translation="MQQEHFDLDLERAILSSCIMSEDAYSSIAGDIEPKDFSLKAHQD
                     VFKAIIACVNAGEPISISFLKKHKKIDEQILTEIIATPSIIDLPAYVNELREKSIKRQ
                     LLSFAHLLPTRINDNRAVSEISDEIGKEIFNITNRVNTNDIKDIEIVLSELLEEFKKQ
                     KSLENKSVIGLDTGFEDLNTMTKGFKGGELIIIAARPGMGKTTLCLNFIEKVLRQDKG
                     VVMFSLEMPAAQIMQRMLSAKTSIPLQKILTADLNDNEWERIGDACNYYSKKKLFIYD
                     SGYATITDVRAILRRLKAQEESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRSLEQRANKRPMMSDLRESGAIEQDADTILFVYRDEVYREQDEK
                     ERENKAKAEGKPYQRNFIPNPMQENAEILVGKNRNGPVGVVEVLFLKEKSCFVDKPRF
                     ESVEFQE"
     gene            2502..3431
                     /locus_tag="SB143_001664"
     CDS             2502..3431
                     /locus_tag="SB143_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HEF9750179.1"
                     /translation="MKKTLFSFALASLFVSQASSIEFQSGLSGNLSLGVGVRDVKSNI
                     SPLANSDYISGYNADNSDTAAIPFIGLELYYGNLIDNDRVFLKNYNGRDLSGIALGYE
                     RAYLERFSTSFSFISSLREKAYANPYFIGNREETDVSKYGFRISQLYESDFGKFNASY
                     VFAKNKLDKESIEFASLKREGNYHELELSYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     KIGTHLVFARNYILTPSLSLNQYKADGTDPIFNQKQDGSITKFNLKLVKNQFLGYNSL
                     YGFTNYGLEKRNSDIDFYDETYHILLTGVGYKF"
     gene            complement(3454..4785)
                     /locus_tag="SB143_001665"
     CDS             complement(3454..4785)
                     /locus_tag="SB143_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002842752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEF9750180.1"
                     /translation="MSNIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     NDALAALALIIPFIMISFALADMIAIGSAVQISMHLGLGKKHLARKIFSSSMLIIFLI
                     SCLVGILEYLLSPVLIDFLDVNEDIKSMAKECMLVFALFAPFTMCSFALDNYLRICGK
                     TTYSMTMNVIIALSNIVLDYIFIVVLGWGLFSAALATCLGLMLGGIFGIFPFLFQNLE
                     LKFSSLYMNMKIFKNIVYNGSSEFFGNISGSLYGIFANLVLLKISGTQAVAAFSIVSY
                     IDNFIIMLIIAMGDAMQPALSYNYAKKDFSRIKDILKVMFFAGAILSLLSVAMIFVLG
                     KDLVGLFTQENDQEFIIFAYMALMLFSFNYLFAWFNVLSGSFLTASNKASFSLILSLS
                     QNLFIPLCFLLILSSIMGLKGVWLSPFFAEFCVLVLACIFVRKVFKKLSFL"
     gene            complement(5011..>5493)
                     /locus_tag="SB143_001666"
     CDS             complement(5011..>5493)
                     /locus_tag="SB143_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEF9750181.1"
                     /translation="NSVLGDEKILVVGGGNSAAEYAVDLANSNKVSLCYRKKEFTRLN
                     DINLKDIHEAGNSGKVELKLGIDIEELEDDNGKAKVKFNDGSNETYDRIIYAIGGSTP
                     LDFLQKCGINVDDKGVPLMDENKQSNVKGIFVAGDIATKNGASIVTGLNDAVKILAVI
                     "
BASE COUNT         2018 a          966 c          755 g         1754 t
ORIGIN      
        1 aattatttca tatataatcc aaaaacaaat caaacttatt caattaacaa ataatatttt
       61 aaacaaatac tttacttatt taacactcca aatctaaagt agaatttaat ctcttttttt
      121 aaaaattctt tatgataaaa atttaatgat acataacaac aattaaaact tcaatataaa
      181 gttttctaaa acaaagccac actcattgca aaacttaaac aaaaccctga tgaaaaattg
      241 cagactgtaa aaaccactca aaaaatcaaa atcacttatt atagattaaa ataatatatc
      301 tactcattac ttagcaatca aagaataatg caacaggtaa aaatggataa atttataaaa
      361 gatgcaggtt atattaaaaa aacttgaagt aaatcaaact cagacgctct taaatagaaa
      421 taaaataata ctaaaatatt ttgtttctat atcaaatcaa ggagaagagc aatgaaacat
      481 tttattttta gtgggttaat tggttgaggc gctttggctt ttttagcagg ttgtggagat
      541 gaagcaaaaa caagcgatta ttataaagca cacttagatg aggctaaagc tagagttgca
      601 gaatgtaaaa aaatggagaa aatgaatgaa actcaacaaa gggattgttc taatgcaaaa
      661 tgggcagttg aaatgcaaac cgacaatcgt gttccttacg gaattggaaa aaatgaaaat
      721 tacaacaaag acgctcttaa atggaaataa actagcgatt atttttttaa tttttcttgc
      781 tccaaattta gcttttgggg ttgaaagtgc agaaggcgtt ttaagcataa tacacaatgg
      841 gcttttatct tgaatgcctc ttattaaaac cgcttgttta tgggtatttt ggactttagt
      901 tattattgat ttagtttaga cttttgactt tgttctcttt ctaaatttct ttatggcaaa
      961 ttaagctcga cctatagagt taatccctac tcctgaaatt caacactctc aaatcgtggc
     1021 ttatccacaa aacaagattt ttcttttaaa aataaaacct cgacaacccc tacaggacca
     1081 tttctatttt tgccgactaa aatttcagca ttttcttgca taggattagg aatgaaattt
     1141 ctttgataag gcttgccttc ggctttcgct ttattttcac gctctttttc atcttgttcc
     1201 ctataaacct catcacgata tacaaacaaa atcgtatccg catcctgctc tatagcccca
     1261 ctttcacgta aatcactcat cataggacgc ttgtttgcac gctgttctaa agaacgattg
     1321 agctgtgaaa gcgcgatgat aggcatatca agctcccttg ctaaaagctt aagccctctt
     1381 gaaatttcgc tgacttgcaa atgtctatca ttaaaattag aattactcat cataagccct
     1441 atatagtcga tcacgcaaag ccctatactt tcttcttgag cctttaagcg ccttaaaatc
     1501 gctcttacat ctgtaatagt cgcataacca ctatcataga taaataattt ctttttagaa
     1561 taataattgc aagcatcgcc aatgcgttcc cattcgttat catttaaatc cgcagtcaag
     1621 attttttgca aaggaatgga agtttttgcc gaaagcattc tttgcatgat ttgagcagca
     1681 ggcatttcaa gcgaaaacat caccactcct ttatcctgtc ttaaaacctt ttctataaaa
     1741 tttaagcaca aagttgtttt tcccatacct gggcgcgctg cgatgatgat aagctcccca
     1801 cctttaaaac ccttagtcat agtatttaga tcttcaaatc ctgtatcaag tcctatcacg
     1861 gatttgtttt caaggctttt ttgcttttta aattcttcca aaagctcact taagactatt
     1921 tctatatctt tgatatcgtt ggtgtttaca cgattggtga tgttaaaaat ttccttgccg
     1981 atttcatcag aaatttcact gactgcgcga ttatcattga tccttgttgg caaaagatgg
     2041 gcaaagctta aaagctgtct tttaatcgac ttttcgcgaa gttcattgac ataagcggga
     2101 agatctatta tcgaaggagt tgcgataatc tcggttaaaa tttgctcgtc tattttttta
     2161 tgctttttta aaaagctaat cgatataggc tctccagcat tcacgcaagc aataatagct
     2221 ttaaaaacat cctgatgagc tttaagacta aaatccttag gttctatatc tcctgctata
     2281 ctagaataag catcctcact cataatacaa ctacttaaga ttgcacgttc taaatccaaa
     2341 tcaaaatgct cttgctgcac ctattttcct tttttgagta aaatttattg aaagatttta
     2401 tctaaaagaa tctaaaaatt cacataagct ttttataaaa aattaaagta atattagtta
     2461 caataaaatt tctaattata aaaactatca aggagtttat cttgaaaaaa accttatttt
     2521 cttttgcttt ggcctcttta tttgtaagtc aagcttcatc catagaattt caaagtggtc
     2581 ttagcggaaa tttaagccta ggagtaggtg taagagatgt taagagcaat atctcacctc
     2641 tagcaaatag tgactatata agcggataca atgccgataa ttctgataca gctgctatcc
     2701 cttttatagg tcttgagctt tattatggca atttaatcga taatgataga gtatttctta
     2761 aaaactacaa cggaagggat ttaagcggta ttgctttggg ttatgaaaga gcttatttag
     2821 aacgctttag cacttctttt tctttcattt catctttaag agaaaaagct tatgctaatc
     2881 cttattttat aggcaatcgt gaagaaaccg atgtaagtaa atacggcttt agaatttcac
     2941 aactttatga aagtgatttt ggaaaattca acgcttctta tgtttttgca aaaaataaat
     3001 tagataaaga aagtatagaa tttgcttctc ttaaacgaga gggaaattat catgagttag
     3061 aattaagcta taattattct ttattaaatt taggcttaaa ctatgattat aatgatgccg
     3121 atggaaaggc tcaaagctac tcaagatatg gctttaaaat aggaacacat ctggtttttg
     3181 caagaaatta tatcctaact ccaagcctaa gcttaaatca atacaaagca gatggcaccg
     3241 atcctatttt taaccaaaaa caagatggta gcattacaaa attcaatctc aagctcgtaa
     3301 aaaatcaatt cttaggctat aactcacttt atggttttac aaattatggc ttagaaaaaa
     3361 gaaatagcga tatagatttt tacgatgaaa catatcacat cttacttaca ggtgtaggat
     3421 ataaattcta aaatcaatcc aaagaaacta tccttataaa aacgatagtt tcttaaagac
     3481 ttttctaaca aaaatacaag ctaaaaccaa aacacaaaat tcagcaaaaa atggactaag
     3541 ccacactcct tttaagccca tgatagaaga taaaatcaaa agaaaacata aaggaataaa
     3601 aagattttga ctcaagctta aaatcaaaga aaaactcgct ttattgctcg ctgttaaaaa
     3661 agaaccactt aaaacattaa accacgcaaa aagataatta aaagaaaaca acatcaaagc
     3721 catataagca aaaatgataa attcttgatc attttcttga gtaaataatc ctactaaatc
     3781 cttacccaaa acaaatatca ttgcaacaga caataaagat aaaatcgcac ctgcaaaaaa
     3841 cattaccttt aaaatatctt taatccttga aaaatctttt ttagcataat tataacttaa
     3901 tgcaggttgc atcgcatcac ccatagcgat aataagcata atgataaaat tatcaatata
     3961 cgaaacgata gaaaaagcgg caactgcttg agtgcctgaa atttttaaca aaactaaatt
     4021 agcaaatata ccatataaag aacccgagat attgccaaaa aattcactgc ttccattata
     4081 aactatgttt ttaaaaatct tcatattcat atacaaactt gaaaatttaa gctctaaatt
     4141 ctgaaataaa aaaggaaaaa ttccaaaaat accgcctagc ataagcccca agcaagtcgc
     4201 aagagctgct gaaaacaagc cccaacccaa cacaacgatg aaaatataat caagcactat
     4261 attactcaat gctataatca cattcattgt catactataa gttgtttttc cgcaaattct
     4321 aagataatta tccaaagcaa aagaacacat agtaaagggg gcgaacaaag caaatacaag
     4381 catacactct tttgccattg atttgatatc ttcatttaca tctaaaaaat cgatcaaaac
     4441 aggacttaaa agatattcta aaatacctac caagcatgaa ataaggaaga taattaacat
     4501 actagaacta aagatttttc tagctaaatg tttcttccca agtcctaaat gcatagaaat
     4561 ttgcacagct gaaccaatgg ctatcatatc agccaaagca aaagatatca taataaaagg
     4621 aataatcaag gccaaagctg ctaaagcgtc atttcctaga tattttccaa caaaaattcc
     4681 atcaacaata taataaaaag aaataaatgc catgcttatt acattaggca cagcacattt
     4741 aacaaaaagc ctaaaagggc ttaaggtgct aaaaatattt gacataaaaa atcctttaaa
     4801 atatttaaca atacaaatat cttaaaagga gctaatagag tgtttgaagt cctagtatgt
     4861 agaaagctaa gcgataggtt tctatcggta tgattttttt attgttttta tcttgtgttt
     4921 gcatgataat atttaaaaat taaaatataa taaagaaatt ataatattga aagtttaata
     4981 agtcaaattc agcccaaggg ccaaatttga ttaaattacg gcaagtatct ttacagcgtc
     5041 atttaagcct gttactatgc ttgcgccatt tttagttgcg atatcccctg ctacgaaaat
     5101 accttttaca ttgctttgtt tattttcatc cattaaagga actcctttat catcgacatt
     5161 gattccgcat ttttgtaaaa aatcaagagg agtagaacca ccgatagcat aaatgattct
     5221 atcataagtc tcgttgctgc catcgttaaa tttcacctta gctttaccat tatcatcctc
     5281 aagttcttct atatctatac cgagttttaa ttctactttg cctgaatttc cagcttcgtg
     5341 aatatcttta agattgatat cgtttaatct tgtaaattct ttcttgcgat aacaaaggct
     5401 tactttatta gaattagcta aatctactgc gtactctgca gctgaatttc cgcctcctac
     5461 aacaaggatt ttttcatcac ctaaaacaga att
//
LOCUS       DARAII010000116         5268 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.117, whole genome shotgun sequence.
ACCESSION   DARAII010000116 DARAII010000000
VERSION     DARAII010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5268)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5268)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5268
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.117"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..254
                     /locus_tag="SB143_001667"
     CDS             <1..254
                     /locus_tag="SB143_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEF9750182.1"
                     /translation="DGINDKLEHAKELVKLLNGIKAKVNLILFNPHEGSIYHRPKLEN
                     AIKFQDLLSAKGVTCTIRESKGLDISAACGQLKERAKEL"
     gene            complement(808..884)
                     /locus_tag="SB143_001668"
     tRNA            complement(808..884)
                     /locus_tag="SB143_001668"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(848..850),aa:Met,seq:cat)
     gene            989..1076
                     /locus_tag="SB143_001669"
     tRNA            989..1076
                     /locus_tag="SB143_001669"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1023..1025,aa:Ser,seq:gga)
     gene            1180..2144
                     /locus_tag="SB143_001670"
                     /pseudo
     CDS             1180..2144
                     /locus_tag="SB143_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002932162.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide biosynthesis protein"
     gene            2253..2328
                     /locus_tag="SB143_001671"
     tRNA            2253..2328
                     /locus_tag="SB143_001671"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2286..2288,aa:Ala,seq:ggc)
     gene            2330..2405
                     /locus_tag="SB143_001672"
     tRNA            2330..2405
                     /locus_tag="SB143_001672"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2363..2365,aa:Val,seq:gac)
     gene            2636..3166
                     /locus_tag="SB143_001673"
     CDS             2636..3166
                     /locus_tag="SB143_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEF9750183.1"
                     /translation="MQNFVIEKATQKDLNSILNITKDALNSMKAMNFNQWNEHYPNEE
                     IFKEDIKAQELYLYKEKDEILGFICINEKFEPEFYEQINFKKSYNNLAFYLHRLAVKE
                     NAKGKGVAQKLLNFCETYAKNEGKYSLRADTHSKNIPMNSLFKKLNFEFCGAFHIPCY
                     EDEFFAYEKILNQKAF"
     gene            complement(3146..3748)
                     /gene="leuD"
                     /locus_tag="SB143_001674"
     CDS             complement(3146..3748)
                     /gene="leuD"
                     /locus_tag="SB143_001674"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEF9750184.1"
                     /translation="MQKFTTHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNASILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVVSIIKQLKESEDKNIEISLFEKKVFFKDQVFS
                     FDLDEFRRTCLLEGLDNIALTLKYEEQIKAYEKNSKSFLV"
     gene            complement(3750..5162)
                     /gene="leuC"
                     /locus_tag="SB143_001675"
     CDS             complement(3750..5162)
                     /gene="leuC"
                     /locus_tag="SB143_001675"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEF9750185.1"
                     /translation="MTMAKTLYEKVFDSHVVYQKENELPILYIDRHLIHEVTSPQAFS
                     GLKMANRKMARSDLTLATIDHDVSTKSTDLDACSGMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVSPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLISKYGTAKGTGYAIEFCGELIEGLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFEKHCEYWRSLKSDEGAQYD
                     ESIVLDASQIQPQISYGTNPSQVIAINERIPKVSDFINPSDQKSLLDALDYVNLEQDQ
                     SLEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKDVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKASAGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(5149..>5268)
                     /locus_tag="SB143_001676"
     CDS             complement(5149..>5268)
                     /locus_tag="SB143_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEF9750186.1"
                     /translation="IAIALERGKMTKDLNANSYLSTDEMGDCIVEILKENNNG"
BASE COUNT         1846 a          866 c          740 g         1816 t
ORIGIN      
        1 ttgatggcat taacgataaa cttgaacacg caaaagaact ggtcaagctt ttaaatggta
       61 taaaagccaa agtgaatttg atacttttca atcctcacga gggtagtatt tatcatcgtc
      121 ctaagcttga aaatgcgatc aaatttcaag atttattaag cgctaaagga gtaacttgca
      181 ccataagaga gagcaaggga cttgatattt cagcagcttg tggacaactc aaagaaaggg
      241 caaaagaatt atgacagctt tggatatttt tcaaatcatt tttatatttg tcgttgtgtt
      301 gataggtttt gtgggtatga tttgggtgat ttctaaagat aaaagcaatc gctaattgaa
      361 taaatctttt attgaaaatt taagatattt aaatttataa ataaaacgat gtgcgctttg
      421 ataaatttaa atatcaatca aattataatt ttatgatact atactcttat caagagtcta
      481 ttttaagtta attttataat aacaaattcc ccttgtgtct ttaaatttga ttattttttt
      541 gattatttcg agataaattt ttaaacatta atctttaaaa tacaataatc aaatttctat
      601 cttttataaa atatacctta tctcaaaacc atctcttcaa acaaatttta tttcaagcca
      661 tataaaagat ggtacaaatt taaatgccaa aaatttaaaa tagaacttaa attctaagat
      721 aaaaacaaat ttataattta aaactattaa gataaaattt gtaattaaaa taatttaagg
      781 gtgatttttt aaaagaagtt ttaaaaatgg tgtcaagggg gagacttgaa ctcccgacct
      841 ccggcttatg agaccagcgc tctaaccagc tgagctaccc tgacataata aatctttaaa
      901 gatcatttta caaaatgaag atgtaattat actctttttt actaaaattt tatttaaagc
      961 ttttttagat ataatttaat ttttaattag acaggtgtcc gagcggttga aggagcacgc
     1021 ctggaacgcg tgtaaagtgc aagctttcga gggttcgaat cccttcctgt ctgccactat
     1081 taacttttta acattaaaat attattgttt tattaaaaat tactttacta cttaataata
     1141 tttttgtaaa atattataat tttttatatg gacttcacaa tgctacaatc gagattattt
     1201 atgaatttaa aaggcatcgg aatatctttt acaccaagat atttttttca aacaaaattg
     1261 cataaaattt tcaatgaaat tttaaaatat aatgctaaag agctagaaga aatacgaact
     1321 cgggttaagt attacaatca aataaatgat ttttttacat taacagaaag agaaaaaata
     1381 ggaaaatttc cttttaaaaa tacttcttat gcttttgatg cttatgaaat tagtaaatac
     1441 tttaatgatg attttttatg gaaaaaagaa tttggtgatg taaaatatac ttttaaagag
     1501 ccggccattt gtaaatcaag acctttagaa aataatacaa acaacatttt attaaaactt
     1561 gataaaaata ggcatttttg ttttttaaaa gacaatataa aatatgaaaa taaaaaagat
     1621 atagcaattt ttagaggtgc tgtatatcaa aaacatagaa aagaattttt tcattcttat
     1681 tttggtaaat cattttgtga tataggagat acttcaaagc aattgagtca atggaaaaaa
     1741 actttttaaa caaaaaagaa caaatgaaat ataaatttat aatttcttta gagggtaacg
     1801 atgtagcaag caacttaaaa tgggctatga attctaattc tttagtttta gctccaaaaa
     1861 taacttgcga aacttggttt atggaaggaa ctttaaaacc aaattaccat tttgctttaa
     1921 ttgataatga taacttagct acagtaatcg aacattttat cagtcatcca aaagatgcgc
     1981 tagaaatcat taataacgct catcagtatg ttaagaaatt cttagataag aaaaaagaat
     2041 tttatatagg gattttagtt ttgactaaat atttttacta ttctgggcaa ctcgatctta
     2101 acaaagatga atgcgaaaga gaaattttag aattaatcaa ataatttaaa attcttttat
     2161 attttatttt tataactttt aataagaatt ttaaatttag ttttcagcca aaaaaaagta
     2221 atattgcgct aaaatttttt agaaaattct aaggggcatt agctcagctg ggagagcaca
     2281 acgctggcag cgttggggtc agcggttcga acccgctatg ctccaccatg gttccgtagc
     2341 tcagttggta gagcactacc ttgacatggt agtggccgtt ggttcaagtc caatcggagc
     2401 caccattttt catttctttc aatttcttca actttcaaaa aataccttaa aagcactata
     2461 tataaacaaa ctaaaggatt tttgatttca atttattgct tttgtgttat aatgattttc
     2521 aattaattaa agttcttttt ggggctttta aaactcaata gggttttttg aagaaataaa
     2581 acttacaaaa aatattaaag ttaaacacta gtatttacat tacaaaagga tttttatgca
     2641 aaattttgtc atagaaaaag ctacacaaaa agatttaaat tccatactta acataacaaa
     2701 agacgctcta aattccatga aagctatgaa ttttaatcaa tggaatgaac attaccctaa
     2761 tgaagaaatt tttaaagaag atatcaaagc acaagagctt tatctttata aagaaaagga
     2821 tgagattcta ggctttattt gcatcaatga aaaattcgaa cccgaatttt acgagcaaat
     2881 caactttaaa aaatcctaca ataatctagc tttttatctg caccgtttgg ctgtaaaaga
     2941 aaatgctaaa ggcaaaggcg tggcgcaaaa gctgttaaat ttttgtgaaa cttatgctaa
     3001 aaatgaagga aaatatagct taagagcgga tactcatagt aaaaatatcc ctatgaattc
     3061 gctctttaaa aaattaaatt ttgagttttg tggggctttt catatccctt gctatgaaga
     3121 tgaatttttc gcttatgaaa aaatcctaaa ccaaaaagct ttttgagttt ttctcataag
     3181 ccttgatttg ttcttcatat tttaaagtta aagctatatt atcaagccct tctagtaaac
     3241 aggttctacg aaattcatcc aaatcaaaag aaaaaacttg atctttaaaa aatacctttt
     3301 tctcaaataa agaaatttct atatttttat cttcagattc tttcagttgt tttataatgc
     3361 ttacaacctc atctttagca agctctatag taagcaaacc atttcctaaa gcattatttt
     3421 taaaaatatc tgcaaaagaa ggcgcgataa tagctcttat accataatcc accaaagccc
     3481 aaggtgcgtg ctcccttgaa gaaccgcttc caaaattttc aaaacttacc aagatagaag
     3541 cgttttggta ttctttttta ttgagattaa aatccatatt taaaacgctt tctttatcgt
     3601 ctaaataacg caaatcatga aataaatgct taccaaagcc ctgctttgaa acagcaagta
     3661 aaaattgctt agggatgatt tgatctgtgt cgatattggc atattccaaa ggacaagcta
     3721 tacctttatg agtagtaaat ttttgcattt taaactccta aatattttct attatcacaa
     3781 ataacgcctt ctatggcaca ggctgctgcg cttgcaggac tcattaagtg ggtgatagaa
     3841 cctttacctt gtctgcctac aaaattacga tttgaagttg aagcaactct ttgtcccgca
     3901 cttgctttat catcattcat accaagacac attgaacacc ctgcatatct ccactcacac
     3961 cctgcttcga taaaaatttt atcaagtcct aaattttcag cttcttttct cacttgcata
     4021 gaaccaggca cgattaaagc tttaacatcc ttgtgaattt tacgcccttt taaaatatcc
     4081 gcagctatct taagatcttc taaacgccca tttgtacaag aacctatgaa aacaatatcg
     4141 atttttaccc cttctaagct ttgatcttgc tccaaattca cataatctaa agcatcaagt
     4201 aaagattttt gatcgcttgg attgataaaa tcgctgactt ttggaattct ttcatttata
     4261 gcaataactt gagaaggatt agttccatag ctgatttgcg gttgaatttg gcttgcatca
     4321 aggactatac tttcatcata ttgtgcgccc tcatcgcttt ttaaacttct ccaatactca
     4381 caatgctttt caaattcttc tccctttgga gcaaattctt tcccttttat atactcaaaa
     4441 gtaatctcat caggagctat cataccgact tttgctccaa attctatagc catattgcaa
     4501 agtgtcattc tagcttccat actcaagcct tctatcaact ctccacaaaa ttctatagca
     4561 tagcctgtgc cttttgcggt accgtatttt gatataagat ataaaatcaa atccttagca
     4621 taaacaccct tttgaaactg acccttacat tctattttca tagttttaag ttttgcttgt
     4681 tttaaagttt gcgtagccat tacatgctcg acctcgcttg tgcctatacc aaaagccaaa
     4741 gctccaaagg ccccgtgtgt tgcagtgtga gaatccccac aaaccaaagt tacacccggt
     4801 aaagtaaaac caagctcggg acttactata tgcactatac cttgattttt atcgcctagg
     4861 cctaaaagtc tgactccaaa ttctttagta ttttgcatca aagtcgtaat ttgctctttt
     4921 gccatacctg aacaagcatc caaatctgtg cttttagtcg atacatcatg atctatagtt
     4981 gctaaagtca aatccgatct tgccatttta cgatttgcca ttttaagacc tgaaaaagct
     5041 tgagggcttg ttacttcgtg gattaaatgt ctatcgatat aaagtatagg aagttcattt
     5101 tccttttgat aaaccacatg agaatcaaac actttttcat ataaagtttt agccattgtt
     5161 attctccttt aaaatttcta ctatacaatc ccccatttca tcggtgctta aataagaatt
     5221 cgcatttaaa tccttagtca tttttccacg ctctaaagct atggctat
//
LOCUS       DARAII010000117         5265 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.118, whole genome shotgun sequence.
ACCESSION   DARAII010000117 DARAII010000000
VERSION     DARAII010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5265
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.118"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..627)
                     /locus_tag="SB143_001677"
     CDS             complement(<1..627)
                     /locus_tag="SB143_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEF9750187.1"
                     /translation="MEFTLEQILVAMALTILAGLSTAIGSVIAFFSRNDNLRILSFGL
                     GFSAGVMIYISFMEILPSAFTDFKKYYNSNYGELLALLCFFGGIFLSAIIDKFIPEDV
                     NPHDPKEDLSELKICPLPQKNEKAPAFHAGEPLKKINVKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLSFGVAIAVAVAIHNIPEGMAVSLPIYHATKDKKKAF"
     gene            775..1866
                     /locus_tag="SB143_001678"
     CDS             775..1866
                     /locus_tag="SB143_001678"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEF9750188.1"
                     /translation="MKNLLVCALEPSANLHLKEVLKAYKEEFGEFKLDGIYDENLCKE
                     FALNSTPLYSSHEFSAMGFVEILPLIFKAKKAIKELVNLTLNQTIDAVLCIDSPAFNI
                     PFAKALKKANSKTKRIYYILPQVWAWKKGRIPIIESHFDVLASILPFDEQFFSKSIYV
                     GHPLLDEIKDFKNENDIKILLSKNESEKTIAFLPGSRRSEIKRLMPVFRELSRKFEGE
                     KILCVPPFNLERLEIYGDVKDFKIQSNTPQVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKTIDIFIARLFVKLKHIGLANIFCDFAGKEALNPEFLQDEVNVLNLYEAYNKYD
                     YKAFFDKVHFLKEYLKFGSAKNLAKILNQ"
     gene            1884..2369
                     /gene="greA"
                     /locus_tag="SB143_001679"
     CDS             1884..2369
                     /gene="greA"
                     /locus_tag="SB143_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEF9750189.1"
                     /translation="MQKEPMSQFGYDKLSAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLIARAQIIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDEFKVRLPKGESEFEIISINYEPLK
                     F"
     gene            2502..3137
                     /locus_tag="SB143_001680"
     CDS             2502..3137
                     /locus_tag="SB143_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEF9750190.1"
                     /translation="MGDIFDLLIGEISATHEFAKPYIKLLEELALKMEIIYLEGNHDF
                     NLARFFQRVKIFNLQEQPLKLNLHTSKGKNTDFKNSFITLAHGDIFLSPPLQFALKSL
                     RNHYLLVFLNFLNQISFNSISNKILKNQNKKNLFYKIENFKNLAKERYKKYENLGFWV
                     CEGHYHQNLILDEKDVKYFNLASFAYERSFFVVECCQEIKFREQKLRGQNV"
     gene            3130..4086
                     /locus_tag="SB143_001681"
     CDS             3130..4086
                     /locus_tag="SB143_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEF9750191.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYSPKTDIDFSKIEKFSGSALILDDSMTARKRVKEMMQQMGFQVIEAKDGVEGL
                     NKLEELSQVYGENLSSVLKIIVSDVEMPQMDGFHFAARIKEDARFKDIPIVFNSSLSN
                     EFMNEKGVHEAGGESYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            4090..>5265
                     /locus_tag="SB143_001682"
     CDS             4090..>5265
                     /locus_tag="SB143_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hpt domain-containing protein"
                     /protein_id="HEF9750192.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELETNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPNGVENETPVEAPQKEEPAPTPEPEVDV
                     NQLSDSEVEAEIERLLKARKAEDQARRAQKKQNTAASTTSKPAASTPKAENMEKKVPA
                     SGGGGGGMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFLEELNQ
                     VVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGEETELD
                     KSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVVEITDD
                     "
BASE COUNT         1962 a          755 c          946 g         1602 t
ORIGIN      
        1 aaaggctttt ttcttatcct ttgtagcatg ataaatcggt aaagaaactg ccattccttc
       61 agggatattg tgtatagcta cagccacagc gatagccaca ccaaagctaa gattatcaag
      121 gcttgagata aaagtcgcaa aaccctcagg aaaattatgt atcgctatgg caagtgcagt
      181 aaatatccct gttcttttca atgcctttac attgatcttt tttaaaggtt cacctgcatg
      241 aaaagcgggt gctttttcat ttttttgagg caaggggcaa attttaagct cacttagatc
      301 ttctttagga tcgtgagggt tgacatcttc ggggataaat ttatcgatga tggctgataa
      361 aaaaattcca ccgaaaaaac acaaaagtgc taaaagttct ccatagtttg aattatagta
      421 ttttttaaaa tctgtaaaag cagagggtaa aatttccata aaagagatat atatcatcac
      481 tccagcagaa aaaccaaggc caaaagaaag aattctaaga ttgtcatttc tgctaaaaaa
      541 tgctatcaca gaaccaatag cggtcgaaag tccggcaagg atggtcaaag ccatcgctac
      601 taaaatttgt tctaatgtaa attccataaa aagcattata gcaaaaatca gtaaataaat
      661 tttatttaat aataattttt attaattatt attaaactta aaacaataaa aactaacaaa
      721 tgctaagaaa aatttagata ttattttact ttaaaaattg tatagagagt gaaaatgaaa
      781 aatcttttag tatgcgcctt agaaccttcg gcaaacctac atttaaaaga agttttaaaa
      841 gcttataaag aagaatttgg cgaatttaaa cttgatggaa tttatgatga aaatttatgc
      901 aaagaatttg ccctaaattc tacgccactt tatagctcgc atgaatttag tgccatgggt
      961 tttgtagaaa ttttaccttt gatttttaaa gcaaaaaaag caattaaaga attggtaaat
     1021 ttgactttaa atcaaacaat agacgcggtt ttatgtattg actctcccgc ttttaatatc
     1081 ccttttgcta aagctttaaa aaaagcaaat tcaaaaacaa aaagaattta ttatatcttg
     1141 cctcaagttt gggcttggaa aaaagggcgc attcctatta tagaaagcca ttttgatgtt
     1201 ttagcctcta tcttgccttt tgatgagcaa ttttttagta aaagcatata tgtaggacat
     1261 cctcttttgg atgaaattaa agattttaaa aatgaaaacg atattaaaat tttacttagc
     1321 aaaaacgaaa gtgaaaagac tatagcgttt ttaccaggct caagacgcag tgaaatcaag
     1381 cgtttaatgc ctgtttttag agaattatca cgcaaatttg aaggagaaaa aatcctttgt
     1441 gtgccacctt ttaatctcga aagattagaa atttatggcg atgtaaagga ttttaaaata
     1501 caaagcaata caccccaagt gcttaaaaaa gctgattttg cttttatttg tagtggaact
     1561 gctaccctag aagcagcttt ggtaggaact ccttttgtgc ttgcttataa agcaaagact
     1621 attgatatat ttatcgcaag actttttgta aaattaaaac acattgggct tgcaaatatt
     1681 ttttgtgatt ttgctggaaa agaagcttta aatcctgaat ttttacaaga tgaagtcaat
     1741 gttttaaacc tttatgaagc ttataataaa tatgattata aggcattttt tgataaagta
     1801 cattttctaa aagaatattt aaaatttgga agtgcgaaaa atctcgctaa aatattaaat
     1861 caataataat taaggatata taaatgcaaa aagaaccgat gagccaattt ggctatgata
     1921 aattaagcgc tgaattaaaa gatttaaaag ataaccaacg ccctgctgtt gtgatagaaa
     1981 tcgacaccgc aagaagtcat ggggatttaa aagaaaatgc agaataccat gccgcaagag
     2041 aaaaacaagc cttgatagaa agtcgtatcg cagaacttag cgatttaatc gcaagagcac
     2101 agatcatcga tccttcaagc tatgaacatg atagcgttaa atttggatct tctgtggtga
     2161 ttatggattt agatactgaa aaagaaagca aatataccct agtaggtatt tgtgagggaa
     2221 atttggataa gggttatatt tctattgctt cacctattgc aaaggctatg cttggtaaaa
     2281 aagagggaga tgaatttaaa gtgcgtttac caaaaggaga aagcgaattt gaaattatct
     2341 ctatcaacta tgaaccttta aaattttaag gatagaaaat tttactacaa aatggagcga
     2401 ttttaatcgc agatgctcat gaaaatgata aaagaagagg cttttgggaa tttttacaag
     2461 ctttaaaaag gagtgaaatt accacacctc aactcatttt aatgggagat atttttgact
     2521 tacttatagg tgaaatctct gctacgcatg aatttgcgaa accctatatt aaacttcttg
     2581 aagaactcgc tttaaaaatg gaaattattt atcttgaagg aaatcatgat tttaatctcg
     2641 ctcgtttttt tcaaagggtt aaaattttta atctacaaga acaaccctta aaacttaatt
     2701 tacatacaag taaaggtaaa aataccgatt ttaaaaattc ttttatcact ctagctcatg
     2761 gggatatttt tttatctcca cctttacaat ttgctcttaa aagcttaaga aatcattact
     2821 tgctagtatt tttaaatttt ttaaatcaaa taagtttcaa ttctatctca aataaaattc
     2881 ttaaaaatca aaataaaaaa aatctttttt ataaaattga aaattttaaa aatttagcca
     2941 aagaaagata taaaaaatat gaaaatttag gcttttgggt atgtgaaggg cattatcatc
     3001 aaaatttaat attagatgaa aaagatgtta aatatttcaa cttagctagt tttgcatatg
     3061 agagaagttt ttttgtagta gaatgctgtc aagaaatcaa atttcgagaa cagaaattga
     3121 ggggtcaaaa tgtttgatga aaatatcgtg aaaacgggtt caaatgaaat ggagcttgtc
     3181 gatttccgta tctttaagca aggacacgat aaagtctatg agggaattta tggggtaaat
     3241 gtctctaagg ttagagaaat tatcaaaatt ccaagcctca cagaacttcc tggtgtgcct
     3301 gattatatcg aaggaatttt cgatcttcga ggcgtagtta taccggtagt aaatcttgct
     3361 aaatggatgc aaatcaccga gccagaaagc actatgctaa aacctagagt tattatcact
     3421 gaatttagta atattcttat aggctttata gtacatgaag ctaaaagaat tcgccgtatc
     3481 aattggaaag atatagaacc agctactttc tctacaggtt caggtgcctt agataaagga
     3541 aaaattacag gtgtcactcg tatagaaaat gatgaagttc ttttgatact tgatttggaa
     3601 agtgttgttg aagatttagg aatttactct cctaaaaccg atatagattt tagtaaaatt
     3661 gaaaaattca gcggatcagc acttatttta gatgatagta tgacagctag aaaacgcgtt
     3721 aaagaaatga tgcaacaaat gggcttccaa gtaattgaag ctaaagacgg agttgaaggc
     3781 ttaaataaac ttgaagaact cagtcaagtt tatggagaaa acttaagctc tgtattaaaa
     3841 attatcgtaa gtgatgttga aatgcctcaa atggatggat ttcattttgc tgcacgcatc
     3901 aaagaagatg caagatttaa agatattcct atagtcttta actcatcttt atctaacgaa
     3961 tttatgaatg aaaaaggtgt tcatgaagcc ggtggtgaaa gctatttggt taaatttaat
     4021 gcaagtgatt tcttcaatga aattgctaaa gtcatcaaaa aacaccaatc tcaagaacag
     4081 gggtaaaata tggaagatat gcaagaaata cttgaagact ttttggttga agcttttgag
     4141 ctagttgagc aaatcgacca tgatttagtg gagcttgaaa caaatccaga agacttagaa
     4201 ttattaaaca gaattttccg tgtagcacac actgtaaaag gctcttcaag ctttttaaat
     4261 tttgatgttt taacaaaatt aacacatcat atggaagatg ttttaaacaa agcaagacat
     4321 ggagaattaa aaatcactcc agatattatg gatgttgttt tagaatccat cgatagaatg
     4381 aaaaccttac ttaactctat acgcgataac ggcaatgata cagctatagg aatggatata
     4441 gaaccaattt gtgcaagatt aacagctata tcagaaggag aatctccaaa tggcgttgaa
     4501 aatgaaactc ctgtagaagc tcctcaaaag gaagaaccag ctcctacacc agaacctgaa
     4561 gtagatgtta atcaattaag cgattctgaa gttgaagccg aaatagaaag attactaaag
     4621 gctaggaaag cagaagatca agcacgtcgt gctcagaaaa agcaaaatac tgcagcttct
     4681 acaacttcta aaccagcagc aagcacacca aaagctgaaa atatggagaa aaaagttcct
     4741 gctagtggag gcggtggagg cggtatggat caaaccatac gcgttgaagt aaaaagatta
     4801 gatcacttaa tgaatctaat tggggagctt gttttaggca aaaaccgttt gcttaaaatt
     4861 tacgatgatg ttgaagagcg ttatgaagga gaaaaattcc ttgaagaact taatcaggtt
     4921 gtaagtcaat taagtattat tacaactgat gttcagcttg ctgtgatgaa aacaagaatg
     4981 caacctatag caaaagtttt caataaattc ccaagagttg ttcgtgattt aagtcgtgaa
     5041 ttaggaaagc aaatagaact tgaaattaca ggtgaagaaa ctgaacttga taaatctatc
     5101 gtagaggaaa ttggcgatcc tatcatgcat atgattagaa attcatgtga tcatggtgtt
     5161 gaggatccag caactcgtgc agcgaatgga aaacctgaaa aaggtatagt ccaacttaaa
     5221 gcttacaatg aaggaaacca tatagttgta gaaattaccg atgat
//
LOCUS       DARAII010000118         5166 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.119, whole genome shotgun sequence.
ACCESSION   DARAII010000118 DARAII010000000
VERSION     DARAII010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5166
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.119"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            54..278
                     /locus_tag="SB143_001683"
     CDS             54..278
                     /locus_tag="SB143_001683"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750193.1"
                     /translation="MLERLETAPSKIVPILITNKLYEKIQTHYSEIIDFIENRVKYFV
                     VYDHRENDKVYIFVNNFLNKPIKVYKNPKS"
     gene            406..576
                     /locus_tag="SB143_001684"
     CDS             406..576
                     /locus_tag="SB143_001684"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750194.1"
                     /translation="MASIEDSLREKELQRAKNILAFCELEDGEYPLSKEEAKSFENFK
                     TNEMEQSSLENE"
     gene            651..1532
                     /locus_tag="SB143_001685"
     CDS             651..1532
                     /locus_tag="SB143_001685"
                     /inference="COORDINATES: protein motif:HMM:NF019997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HEF9750195.1"
                     /translation="MARKKEVNAEIKEVANEQVKDNSYKAWDERTNEEKKASINEYSK
                     AIIAKAIKEKATFWGKDMSKQDIDNSMPYNASKGIAYTGLTSALLRAVSELNGYEKPS
                     FLTMKQANFLGGTLKKQVDEKGKPILTKNGKEAYEQGVKIALLKTESYIPKVDENGQV
                     MTRAIKDQNGNQKIGKDGKPMFETVMEKIYHKTPILETVTLYHTSQFENLKMDKLKER
                     DLESLEKLRDSIKRSNYDTRPNVNNLGLGERVTRDINNFLNAELKGLEYSKIQDKEIT
                     QTQTKKKEQKKSQGRGM"
     gene            1674..1943
                     /locus_tag="SB143_001686"
     CDS             1674..1943
                     /locus_tag="SB143_001686"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750196.1"
                     /translation="MLGVLAEFIKFLGLNNETNFTKTRTEEKEDELKELIEYENDMPK
                     YYEESEIIDLGNQKIEVIKSIKINPLGKGKAMKTSQIKEQRIIKF"
     gene            1953..3101
                     /locus_tag="SB143_001687"
     CDS             1953..3101
                     /locus_tag="SB143_001687"
                     /inference="COORDINATES: protein motif:HMM:NF016491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system protein"
                     /protein_id="HEF9750197.1"
                     /translation="MEKTTIDNSWLDALQGTMQDALKPLFENIFNGIQGTLYNGVAYT
                     IIGIWVMFWCLNLLKNGYPSREELFNAGKWVLTLCFIFGIFYSYDGYTTFLGWLMIPA
                     QWLKSATAGLIGGNADSFGNQVTNAFNSLNDIMVSLWNEGWKRWSGLFSPDTFAALAV
                     FAGMFCFWCFYIVTFFVLAGVACIIVSSTFFAMIILSLAPATIPLLFSKKTAPYFYSW
                     LKIFISYSLYVPASFIILSICMIPIQKVQELGNIKQVYDNQFDNFFVPTLISLICIYL
                     VAKIPNWISQVMGVQGLDGGGSGGALDMAKSVGMATTSFGAGTLAKRMAGGSVGESLK
                     HGIANAIPGSQSLRKMAGDLKGQNSQTNLIDTMQGLTDTITGATAKAG"
     gene            3123..5090
                     /locus_tag="SB143_001688"
     CDS             3123..5090
                     /locus_tag="SB143_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IA DNA topoisomerase"
                     /protein_id="HEF9750198.1"
                     /translation="MENTIIIIESPNKREKIEKITGAKVYATKGHFKSLSKNFLKEYE
                     NYEPIFDFSSDETKKRMNAIFADCKNKDVIIATDPDREGYGIAYLFYEVIKNIAKSIK
                     RAEFHEITESGINKGLKNAVEFSKSNLNDFEAFKARIVGDKLVGFIMSPKYINKMNDK
                     NISIGRVQTPALSLIVEREKAIQEFLNDDKNKKLDYKIKAKLEKDGIVFYANNPNIYP
                     NKEEALEKIESLRGKNAKLYTIETKKSEIKPAHPFRTSQFQEKANKVFGFAPDKSMAL
                     AQKLFEKGLITYHRTDSNALSVEFLNEVEAFFKEKQWYQKREYKAGEQSQAEAHEAIR
                     ISHLHSFEDIEKIAKEENLSDDEKNTYTLIYLNSIQSQAKNAINEITSYDFNIGILSF
                     KTNISKCIDKGFKGAFDFKEEEEKDEKDDTQELEINIKEGEEAKVLDFELIEVKKQAP
                     RRYKESNFISLLEKEGIGRPSTYASFLKTLLDREYVELATKGKNKEIVATKKGISLID
                     FLNENNDEWITKSEFTKQMEEILDTISKGNLQYIDFIKPLHQKMEFIHIDDSDQIRKP
                     SEKQIAFAEKLAKENNLELPKDYKENIKVCMNFLEKAKENAKPLPASAKQIAFAEKLA
                     KENNLELPKDYKENIKVCSSFIDEAIKKNKK"
BASE COUNT         2108 a          613 c          920 g         1525 t
ORIGIN      
        1 attttattta tttatatttt aatcaatttt tgacatttgg aaaaaattta acattgttag
       61 agcgtttaga aacagctcct tctaaaattg ttcctatttt aattacaaat aaactttatg
      121 aaaaaattca aacacattat agcgaaataa ttgattttat cgaaaataga gtgaaatatt
      181 ttgttgtata tgatcatagg gaaaatgata aggtttatat ttttgtgaat aattttctta
      241 ataagccaat aaaagtttat aagaacccaa aatcttaaat ttgtttcaaa ggctttaagc
      301 ctttgatcta aactaagcct tttaaaaaat agaaggttta gtttaggtta tagttgtttg
      361 gaatatgaaa aattatagcc taaatacaaa aaaaggagca ataaaatggc aagcatagaa
      421 gatagcttaa gagaaaaaga gttgcaaaga gcaaaaaata ttttagcttt ttgcgagtta
      481 gaagacggag aatatccact tagcaaagaa gaagctaaga gttttgaaaa tttcaaaact
      541 aatgaaatgg agcagtcttc tttagaaaat gagtaaatca ttttcatttc atttatgcgt
      601 attgcaaagc gtataaatta aggactacat attttaaaaa ggaaaaaatt atggcaagaa
      661 aaaaagaagt aaatgcagaa attaaagaag ttgcaaatga gcaagttaag gataattctt
      721 ataaagcgtg ggatgaaaga accaatgaag agaaaaaagc gagtatcaat gagtattcta
      781 aagcaataat tgcaaaagct atcaaagaga aagcgacttt ttggggtaag gatatgtcta
      841 aacaagatat tgataattct atgccttata atgcaagcaa gggtattgct tacacgggat
      901 taacttccgc ccttttaaga gcggtaagcg aacttaacgg ctacgaaaaa cctagttttc
      961 taacgatgaa acaggctaat tttttagggg ggacacttaa aaaacaagta gatgaaaaag
     1021 gtaaacctat tttaactaag aatggcaaag aagcttacga acaaggcgtt aaaatagccc
     1081 tgttaaagac tgaaagctat atccctaaag ttgatgaaaa cgggcaagtt atgacaagag
     1141 ccataaaaga tcaaaacggc aatcaaaaaa taggaaaaga cggtaagcct atgtttgaaa
     1201 ctgtaatgga aaaaatttac cataaaacgc ctattttaga aaccgttact ctttatcata
     1261 catcgcagtt tgaaaatctt aaaatggata agctcaaaga aagagattta gagagtttag
     1321 aaaaattaag agatagtatt aaaagatcaa actatgatac aagacctaat gttaataatt
     1381 taggacttgg agaaagggta acaagagata tcaacaactt cttaaatgca gaacttaagg
     1441 ggcttgaata ttctaaaatt caagacaaag aaattacaca aactcaaacc aaaaagaaag
     1501 aacagaaaaa atctcaaggt agaggaatgt aattaggctt aatttatttt ttatgtgctt
     1561 ttattgctct tcccctaaaa atttttttag gggaaaatta agccaaaagt cttaattttt
     1621 atgagtttaa gcggggacac cccgcaacgc cccaaaagtt ttaaggagta taaatgttag
     1681 gagttttggc agagtttatc aaatttttag gattaaacaa tgagactaat tttactaaaa
     1741 caagaacgga agaaaaagaa gatgagttaa aagaattgat tgaatatgaa aatgatatgc
     1801 ctaaatatta cgaagaaagt gaaattatag atttaggaaa tcaaaaaata gaagttatca
     1861 aaagtattaa aataaaccct ttaggtaagg gtaaggctat gaaaacaagt caaattaaag
     1921 aacaaagaat tattaaattt taaggattaa aaatggaaaa aactaccatt gataatagtt
     1981 ggttagacgc cttacaaggc actatgcaag acgctttaaa acctttattt gaaaacattt
     2041 ttaatgggat acaagggact ttatataacg gcgtagctta tactattata ggtatttggg
     2101 taatgttttg gtgcttgaat ttacttaaaa acggctatcc tagccgagaa gagcttttta
     2161 atgcaggaaa atgggtttta acattatgct ttatatttgg tattttttat tcttatgatg
     2221 gatacactac atttttaggg tggctaatga taccagcaca atggttaaaa tcagctactg
     2281 caggactgat agggggaaat gcagacagtt ttggaaatca agttacaaat gcttttaatt
     2341 ctttaaatga tataatggtt agtttatgga atgaagggtg gaaaagatgg agtggtttgt
     2401 ttagtcctga tactttcgcc gccttagctg tatttgcagg aatgttttgt ttttggtgtt
     2461 tttatatagt tacttttttt gtattagcag gcgttgcttg tattattgta agttctactt
     2521 tttttgcaat gattatttta agtttagctc ctgcaaccat accactttta tttagtaaaa
     2581 aaaccgcacc ttatttttat tcttggctta aaatctttat ttcttattct ttgtatgtgc
     2641 ctgcgagctt tatcatactt tcaatttgta tgatacccat acaaaaggtg caagaattag
     2701 gaaatataaa acaagtttat gataatcaat ttgataattt ttttgtgcct actttaattt
     2761 cattaatttg tatttatctt gtggcaaaaa taccaaattg gatcagccaa gtaatgggag
     2821 ttcaaggatt agatggtggc ggaagcggtg gagctttaga tatggcaaaa agtgtaggta
     2881 tggctactac ttcatttgga gcaggaactt tagcaaaaag aatggcaggt ggaagcgtag
     2941 gagaaagttt aaagcacgga atagctaacg ctattccagg ctctcaaagt cttagaaaaa
     3001 tggcaggaga tctaaaagga caaaattctc aaaccaattt aattgataca atgcaaggat
     3061 tgactgatac tatcacagga gcaactgcta aggcaggtta aaaaagaaaa aaaggagaaa
     3121 aaatggaaaa tacaattatt attatagaaa gtcctaataa aagggaaaaa atagaaaaaa
     3181 tcacaggagc taaggtttat gctactaaag ggcattttaa aagtttaagt aaaaactttt
     3241 taaaagaata tgaaaactac gagcctattt ttgatttttc aagcgatgaa accaaaaaaa
     3301 gaatgaatgc tatttttgca gattgtaaga ataaagatgt gattatagct acagaccctg
     3361 atcgtgaagg ttatggtata gcttatttat tttatgaagt gataaaaaat attgctaaga
     3421 gtattaaaag agcagaattt cacgaaatta cagaaagtgg gattaataaa ggtttgaaaa
     3481 atgctgtaga gttttcaaaa agtaatttaa atgattttga agcatttaaa gcaagaattg
     3541 taggcgataa attggtgggt tttataatgt cgcctaaata cattaacaaa atgaatgata
     3601 aaaatatttc tataggaaga gtgcaaactc ctgctttatc tttaattgtt gaaagagaaa
     3661 aagctataca ggaattttta aatgatgata aaaataaaaa actagattat aagattaaag
     3721 caaaattaga aaaagacggc atagtttttt atgcaaacaa tcctaatatt tatccaaata
     3781 aagaagaagc tttagagaaa atagagagct taaggggtaa aaacgcaaaa ctttatacca
     3841 tagaaactaa aaaaagcgaa ataaaacccg cacatccttt caggacttca caatttcaag
     3901 aaaaagctaa caaagttttt gggtttgcac ctgataaatc aatggcatta gctcaaaaac
     3961 tctttgaaaa aggtttaatt acttatcaca gaacagatag taatgcttta tcagttgaat
     4021 ttttaaatga agttgaagct ttttttaaag aaaaacaatg gtatcaaaaa agagaatata
     4081 aagcaggaga gcaaagccaa gcagaagctc acgaagctat aagaatatca catttgcaca
     4141 gctttgaaga tatagaaaaa attgctaaag aagaaaatct tagcgatgat gaaaaaaata
     4201 cctatacttt aatttattta aattcaatac aaagccaagc aaaaaatgcc attaatgaaa
     4261 ttacaagtta tgattttaat ataggtattt taagttttaa aaccaacatc agcaaatgta
     4321 ttgataaagg ttttaaaggg gcttttgatt ttaaagaaga agaagagaaa gacgaaaaag
     4381 atgatacaca agaattagaa attaatataa aagaaggcga agaagctaaa gttttagatt
     4441 tcgaattaat tgaagttaaa aaacaagccc caagaagata taaagaaagt aatttcatct
     4501 cccttttgga aaaggaaggt ataggacgcc ctagcaccta tgcaagcttt ttaaaaacat
     4561 tattagatag agaatatgta gaattagcta ctaagggaaa aaataaagaa atagttgcaa
     4621 ctaaaaaagg aatatcttta attgattttc taaatgaaaa taacgatgaa tggatcacga
     4681 aatcagaatt cacaaaacaa atggaagaaa ttttagacac tatttcaaaa ggaaatttac
     4741 aatatatcga ttttattaaa cctttacatc aaaaaatgga attcatacat attgatgata
     4801 gcgatcaaat aagaaagcct agtgaaaagc aaatagcttt tgcggaaaaa cttgctaagg
     4861 aaaataactt agaattacca aaggactata aagaaaatat aaaagtttgt atgaattttc
     4921 ttgaaaaagc taaagaaaat gctaaacctt tacccgcgtc agctaagcaa atagcttttg
     4981 cggaaaaact tgctaaggaa aataacttag agttgccaaa ggactataaa gaaaatataa
     5041 aagtttgctc gtcttttatt gatgaagcaa taaaaaagaa taaaaaataa gaaattcttt
     5101 taaactcctt tttaatacta aaaagggctt acgataagca aaaaaagggg gaaaatgttt
     5161 cggttt
//
LOCUS       DARAII010000119         4940 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.120, whole genome shotgun sequence.
ACCESSION   DARAII010000119 DARAII010000000
VERSION     DARAII010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4940)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4940)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4940
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.120"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            458..1753
                     /locus_tag="SB143_001689"
                     /pseudo
     CDS             458..1753
                     /locus_tag="SB143_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790444.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2010..2391
                     /locus_tag="SB143_001690"
                     /pseudo
     CDS             2010..2391
                     /locus_tag="SB143_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809492.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2404..3576
                     /locus_tag="SB143_001691"
     CDS             2404..3576
                     /locus_tag="SB143_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEF9750199.1"
                     /translation="MLPLEGKLVLSIEQAIAAPFCTRQLADLGARVIKIERPEVGDLA
                     RGYDKRVDGIASHFVWVNRSKESLAIDLKDPDGLEFIKTILPKVDIFVQNLAFGASKR
                     LGLDYENLKKYNPKIIVCDISGYGEGGNYGHKKAYDLLIQSESGLVSITGTQDECVKV
                     PISIADISAGMYAYSGILQALLYLEKTGKGSRVEISMLECMAEWMNYPLYYTYKNATP
                     PERKGAFHASITPYGPYKAKDGVVMFGLQNPREWESFCKIVLQDESLIEHEDFKNNTL
                     RTKNASKVKEIIEDAFKNLSAKEVVDRLDEAKIANGNVNELNQVWEHPQLKARNRWRE
                     VDSEVGKIPALLPPATNNNYEARMDKIPALGEHTESILKEFGFSDKINLFKEKKII"
     gene            3586..4419
                     /locus_tag="SB143_001692"
     CDS             3586..4419
                     /locus_tag="SB143_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA ester lyase"
                     /protein_id="HEF9750200.1"
                     /translation="MKAKSFLFVSSIFPERFTKALQSGASQIIIDLEDSVEVAKKEVG
                     RKNIVDFSSQCAKNNDKFLIRINETKSKEFQKDLSLISTIKESNGIIGVVLPKAQSYE
                     DIDMLSQFELPIIPIIESALGVENLDDIARHPSVLALSFGSLDMTLDLNLQEGEGKNF
                     ILNSIRTQIILKSTKYNLLSPINGVYPDIKNIDGLKEDLIFAKSMGFGGSLCIHPNQV
                     APINEVFSPSAKQIAWAKEILSLRQNSNDIIFNYNGMMVDLPVIKKAEQILLDSNSNL
                     S"
     gene            4661..>4940
                     /locus_tag="SB143_001693"
     CDS             4661..>4940
                     /locus_tag="SB143_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEF9750201.1"
                     /translation="MNAKKLKLSILCFCLMGLGEIKAEEQYQLDDVVVSASGFEQDLV
                     DAPASISVITKEELSKKPIKDIGEAISDIPGVDVTMNKTGTYDFSIRGF"
BASE COUNT         1741 a          616 c          889 g         1694 t
ORIGIN      
        1 ttttagcgaa agctaaaaac tctaccccat aaaaatattc tttaaaattt tcaaattaat
       61 ccaaaaaact caatttttaa taataaacaa aattcataga agaaaatatc aataaaattc
      121 tgagtaaaga gtgagatatt taatacttgt gtattacaaa taaaataata cagaagcgca
      181 caaaagaagt atttatcttt tttagtggat aaaaataatt taataaatga gtaatattgt
      241 aacaaaaatt tatcaatatt aaaaatatat aaaaataaaa tacttaattt tttaaatttg
      301 aaaaattaag taacaatttt ttagattatg agaatattag taacattatt aaataaaatt
      361 tttatttatc aaagatttat tgataagatt taagtatttt ttattggaag ttagtggaaa
      421 attattttaa aattactcaa aaataagaag ctaactgatg gatattatta atattattat
      481 tttattttcc ctcataatat caattgcttt gggctatgtt tttaaagcga atatcggagt
      541 tttcgcaata ctttcagcct ttattggggc atacctttac ggtataacac cagaaaaggt
      601 gattaatctt tggaatggaa gtttaagttt attttttata cttctttcta ttacttattt
      661 ttatggtttt gcgattgcaa atggtacgct aaacaatctc gcgttaaaag ctgtgtattc
      721 tgttaggaat agaccttgga gtattcctat tgcactttat attacagtta tggtatttgt
      781 aggaattgga ccaggacatt atgtaggctt tgcttttatg agtcctttgg ttctttatat
      841 tgctagcaaa atcaaaatga ataagatttt agcagctatt attatttatt ctggttcttg
      901 tgcaggtgga tttaatccct ttacccttgg tggcagagta acttttgatc ttatcgaaaa
      961 acttggttat tcagcagaag cttctgcaat aatgcaatta aatttaggta aaaatatgtt
     1021 tattgcacat actttgattt tttataatcg gatatttttt gctaaaaggt tataaggtga
     1081 aaattacttc gcaaattaca aaaccaaaaa gactcaatgc tgcacaatgg aagacgattt
     1141 ttattgtgtg ttttgttttt gcggttatta tgatcccatc tttttttctt gctttaaatc
     1201 ctcatgatga aacactaaaa aaagtaactt ccatttttaa ccctgttttt gtttcatttc
     1261 ttggaatcgt tttggcagta atatttggaa ttggtagtga aaaagaagca tttaagaatg
     1321 tgccttggga tttgattttc atgattggat cactttctat gcttattgag ctcagtaaaa
     1381 caacaggcat aatggaaaat atcacaatat ttatgagtgc gcacggttca agtagcagta
     1441 attggcttta ttatttgctt ggaattttac ttcttgtatg agtgcgtttg cctcaagcat
     1501 gggggtggtt atgccaacat ttttctctat cgtaccatca atcaaagcac ttgagccatc
     1561 acttgcattt tctataatcg cagtatttgc aacatttact ggatattcaa gtttttcaac
     1621 aggcggagcc ttggttttgg ctggtgcaca agatgaaagt gaaaaacgct atctttttat
     1681 aagattgata atattgcctt taattttggt agtatttggt tttgtattat tatttttagg
     1741 tattttaaat taaggagaaa aaaatgagtt atgaaaattt tattggaaaa caagaaaaat
     1801 ttacagaaaa catcaatgaa aaacaggtgt aaaaaattgt tgcaacgcta caatctaagc
     1861 aattaaaaaa tggcgatgcc cttccatatc tttggcaatg gtgctttttt aatgaagcac
     1921 taactccaga taaattaggc agagatggcc atcctaaact aggactagat aaaaatagct
     1981 tttttccaag ctttggtgaa gtcaatcgta tgtgggcagg aggtagattt aactttattg
     2041 ctcctttgat tattggagaa gatgcaacct gattccacgc ttttgtttcg ctattctgct
     2101 ttaaccttta atagccataa gatccactat gtttttcctt atgcaacgca agttgagggt
     2161 tatcatggtt tagttataca tggtccttta ttggcaactt atatgattaa ttgttttgta
     2221 aaaaaccatc ctgataaaca aattattaat tatagttata gaggtatgca tgcgctttgt
     2281 gttcctgata gttttgctgt ggagtcaaaa attattgaca acaatactgc tgaagtatgg
     2341 ataaataaaa atggatttgt ggcacattct ggcactattc attttaaata aaaaggagaa
     2401 gagatgttac ctttagaagg aaaactagtt ttaagtatag aacaagcaat agcagcacct
     2461 ttttgtacaa ggcaattggc agatttggga gctagagtta ttaaaatcga aagacctgaa
     2521 gtgggagatt tagcaagagg atatgataaa agagtagatg gcatagctag tcattttgta
     2581 tgggtaaatc gtagcaaaga aagtttggct attgatttaa aagatcctga tgggcttgaa
     2641 tttatcaaga cgattttacc aaaagtagat atttttgtac aaaatttagc atttggagca
     2701 tctaaaagat tgggattaga ttatgaaaat ctaaaaaaat ataacccaaa gattatagtt
     2761 tgcgatattt ctggatatgg cgaaggtgga aattatgggc ataaaaaggc ttatgatctt
     2821 ttaatacaat cagaaagcgg cttagtttct ataacgggta cgcaagatga atgtgtaaaa
     2881 gttccaatca gtatcgcaga tatttccgca ggaatgtatg cttatagcgg tattttacag
     2941 gcattattat acttagaaaa aacgggaaag ggttctaggg tagaaatttc catgctagaa
     3001 tgtatggctg aatggatgaa ttatcctctt tattacacct ataaaaatgc gactcctcca
     3061 gagagaaagg gtgcatttca tgcaagcatt actccatatg gtccttataa ggcaaaagat
     3121 ggagttgtaa tgtttggctt gcaaaatcca agagagtggg aaagtttttg taaaattgta
     3181 ttgcaagatg aatcattgat cgagcatgaa gattttaaaa ataatacctt aagaaccaaa
     3241 aatgcatcaa aagtaaaaga aataatcgaa gatgctttca aaaaccttag tgcaaaagaa
     3301 gttgtagatc gtcttgatga agcaaaaatt gcaaatggaa atgttaacga acttaatcaa
     3361 gtatgggagc atccacaact aaaagctaga aatcgttgga gggaagttga tagtgaagtt
     3421 ggaaaaattc ctgcactttt gccacctgcg acaaataaca attatgaagc tagaatggat
     3481 aaaatcccag ctcttggaga acatacagaa tcaattctta aagaatttgg cttttctgat
     3541 aagataaatt tattcaaaga aaaaaagatt atctaaggat tttatatgaa agccaaaagt
     3601 tttttatttg tttcatcaat ttttccagaa agatttacaa aagctttgca aagtggtgct
     3661 agtcaaatta ttattgattt agaggattct gttgaagtgg caaaaaaaga agttggaaga
     3721 aaaaatattg tagatttttc aagccaatgt gctaaaaata atgataaatt tcttataaga
     3781 atcaatgaaa caaaaagcaa ggaatttcaa aaagatttgt ctttaatttc aactattaaa
     3841 gaatctaatg gcattattgg cgttgtattg ccaaaagcgc aaagttatga ggatatagat
     3901 atgcttagcc aatttgaact tcctataata cctattattg aaagtgcgtt aggagtggaa
     3961 aatttagatg atattgctag gcatccgagt gttttagcat taagttttgg aagtttagat
     4021 atgactttgg atttaaattt gcaagagggt gagggtaaga attttatttt aaatagcatt
     4081 agaacacaga ttattctaaa aagcacaaaa tacaatcttt tatcgccaat aaatggagtt
     4141 tatcctgata taaaaaatat tgatggatta aaagaggatt taatatttgc aaaatcaatg
     4201 gggtttgggg ggtctttgtg cattcatcca aaccaagttg caccaattaa tgaagttttt
     4261 agcccatcgg ccaagcaaat tgcatgggca aaagaaattt tatcacttag gcaaaatagc
     4321 aatgatatta tttttaacta caatggaatg atggtggatc tacccgttat taagaaagca
     4381 gaacaaattc tgttagatag caattcaaat ctctcatagg gagatttgaa taaattattt
     4441 gtgtataaat ataatacttt tttaagatat tttatcctct tacttgtctt taaaataact
     4501 tataatattt ctaaaaagct atgttttgtg caaattttaa gctttaaaat tgtttttata
     4561 attattatca aagttaagta aatttaaagt catttttatc tatacttcaa aattgatttt
     4621 gactatcata atagcctaat acaagaaagg aaaaaggata atgaatgcta aaaagcttaa
     4681 attaagcatt ttatgttttt gtttgatggg attaggtgaa atcaaagcag aagaacaata
     4741 ccaacttgat gatgtggtag tgagtgcaag tggttttgaa caagacttag tggatgcgcc
     4801 tgctagtatt tctgttatta ctaaagaaga gcttagtaaa aagcctatta aggatatagg
     4861 agaagcaatt tcggatatcc cgggtgttga tgttactatg aataaaaccg gtacttatga
     4921 ttttagcata cgaggttttg
//
LOCUS       DARAII010000120         4919 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.121, whole genome shotgun sequence.
ACCESSION   DARAII010000120 DARAII010000000
VERSION     DARAII010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4919
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.121"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..217)
                     /locus_tag="SB143_001694"
     CDS             complement(<1..217)
                     /locus_tag="SB143_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750202.1"
                     /translation="MRNYYISEGVKALFSVYFKDQTEENFIKALNEFNKENQINSQEI
                     KDEALREIKEELSKLATTDLLNTKIDKV"
     gene            complement(248..847)
                     /locus_tag="SB143_001695"
     CDS             complement(248..847)
                     /locus_tag="SB143_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750203.1"
                     /translation="MFTKAFRFTDEGDLVITLTPDFECFLAENQIKNSQDFADKFSDT
                     LDENRYFDIPRILCYKEDLKSTPFEDFDNEYFVFVPNDTNIDLDSLSYATSTLKLLNQ
                     KELLIETMKIKIKEGEINKENLKENLENKIKYISEQIPIVFEGKVGEDTIENLLKEKE
                     IIVLPNVTKYAKNSINEYFENEKDEILEELNAICKKNMI"
     gene            complement(872..1237)
                     /locus_tag="SB143_001696"
     CDS             complement(872..1237)
                     /locus_tag="SB143_001696"
                     /inference="COORDINATES: protein motif:HMM:NF022151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2493 domain-containing protein"
                     /protein_id="HEF9750204.1"
                     /translation="MKLLVCGGRDYKDVEHFNKEMSNIFSLYQNQIDTIIEGGASGAD
                     NMAKNYALKNKINLVEVKADWQHFGKAAGPIRNQRMLSMLDSNDCVLAFWNGVSKGTK
                     NMIEIARNKNIKVIIINIK"
     gene            complement(1298..2464)
                     /locus_tag="SB143_001697"
     CDS             complement(1298..2464)
                     /locus_tag="SB143_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEF9750205.1"
                     /translation="MKYDIERLNNIPIMDVLESLGAISDKNKRIIHCFNITAHKNNDH
                     NASLGIYESTNTCHCFACGVGGNPVNVVKTMFNGNFKEACEYLHSQFNIPFLNGIQAT
                     YKKVFEKPKPKAKDYLFFDPNKKYVEVEKLAPFVQNYSTLTKAQKLKLVYTTIYRFSL
                     STEQKAKNLYYLKRGIKDLSLVEKIGFLNFNNIKELENLLKEYFPIEDLIEFKIFSKE
                     KQVWKYAFNVALVPNFDLYSNMVVGFSLRVIDSAYNGAKEVNISCGNIVFAMPFGLEN
                     KLLKECEKIVITEGHIDCLSARNYYKQDSKTLFISFAGTFSFREEILTVFKDKRVMLC
                     FDKDEAGINGEKSLSEKLSLLNIKNYSLTWDIADGKDLNDLLLADKMGSIKLIA"
     gene            complement(2524..3771)
                     /locus_tag="SB143_001698"
     CDS             complement(2524..3771)
                     /locus_tag="SB143_001698"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750206.1"
                     /translation="MNTMNEINAIIKTVAGLGYKINSIKAYDYQLESEELFKIYRKCS
                     QELIKLAPVASKKFDKGASIALLDHHILNIAREGFDNAFKIYESRKSIKNVNTELPVF
                     INIDALNRLNEGKNECDDRFIGFFKKHNYTPYTFSYKDSTYYVLKDDELDIFEKNFAT
                     TGISRNAFEKSLSDLYKKTLQSLIDDYLCFNHSCLVIDKNTEKITTPTNLLDVRIVEI
                     LNYMDFEVREGKDPLGYTVFFLWDIQKQKYYLQNIEDLEKVKMELEENNIDCEVHDNY
                     CLVDDLKVINCYCGSNVQSLLELIPDGYFKDYEIDQENMLTLEKSFLPEDKKVKKVYA
                     ILKQPLINQCEFDIENAVMLYDDYNEALKVFIDNVQLDLKQYGIYRVLETEDDVNDAW
                     EELIYKFEGYLEYYEVLKALKVN"
     gene            complement(3774..4249)
                     /locus_tag="SB143_001699"
                     /pseudo
     CDS             complement(3774..4249)
                     /locus_tag="SB143_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896448.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4293..4877)
                     /locus_tag="SB143_001700"
     CDS             complement(4293..4877)
                     /locus_tag="SB143_001700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750207.1"
                     /translation="MEKNVLENMFKKLMHKGISVFTLDGKEIRIEQDEFYNPFDDCGN
                     PSFFNLLKRYNIGEKEIDGLDCTDFENIQEIEDYLNSKGYIWIRVGAYIHSGIALHSE
                     GNKPRSYSYGWDCGCAGYAYYTKEQVREIFDVKRISAKFKDKLYKNIEIFIKELEAYL
                     EGNIYTLYVDDIPEDTFIGYDKKQMLQTLERFAA"
BASE COUNT         1578 a          845 c          540 g         1956 t
ORIGIN      
        1 caaccttatc gattttggta ttcaaaagat ctgtagttgc taattttgaa agctcttctt
       61 taatttctct aagagcttca tcttttatct cttgagaatt tatttgattt tctttgttaa
      121 attcattaag agctttaatg aaattctctt cagtttgatc tttaaaatag acagaaaata
      181 aagcttttac accttctgaa atataataat ttctcactat attgccttgc attgtatttc
      241 tccttgatta tatcatattt tttttgcata tagcatttaa ttcttcaagt atttcatctt
      301 tttcattttc aaaatactca ttaatgctat tttttgcata ttttgttaca tttggaagta
      361 caataatttc tttctctttt aaaagatttt ctattgtatc ttcacctacc ttcccttcaa
      421 aaacaatagg aatttgttca ctaatgtatt tgattttatt ctctaaattt tcttttagat
      481 tctctttatt gatttcacct tctttaatct ttatcttcat agtctcaatt aaaagttctt
      541 tttggtttaa aagctttaaa gtgctagtag cataacttaa gctgtctaag tcaatatttg
      601 tatcatttgg aacgaacaca aaatattcat tatcaaaatc ttcaaaaggc gtgcttttta
      661 agtcttcttt ataacaaaga attcttggaa tatcaaaata tctattttca tcaagagtat
      721 cactaaattt atctgcaaaa tcttgactat ttttgatttg attttcggct aaaaagcatt
      781 caaaatcagg tgttaaagtg ataactaaat caccttcatc agtaaatcta aaagcttttg
      841 taaaaatttc attgttttct ccttttttat tctattttat gttgatgatt attactttta
      901 tgtttttatt tctagctatc tcgatcatat tctttgttcc ttttgaaact ccattccaaa
      961 aagccaaaac acaatcgttg ctatccaaca tagataacat tctttgattt ctaataggac
     1021 ctgcagcttt tccaaaatgc tgccaatctg ccttgacttc aacaagatta atcttattct
     1081 ttaaggcata atttttagcc atattgtcag caccactagc cccaccttca atgatagtat
     1141 ctatttgatt ttgatacaaa gaaaatatat tactcatttc tttattgaaa tgttctacat
     1201 ctttgtaatc ccttcctccg cacactaata atttcatttt tttccttttc taagttaatt
     1261 gcatttgcaa ttctgcagca atttacgctc tttattgcta cgcaataagc ttaatactgc
     1321 ccattttatc tgccaaaagc aagtcattta agtcttttcc atctgctata tcccaagtaa
     1381 gactatagtt tttaatattt aaaaggctta atttctcgct taaacttttt tctccattta
     1441 tccctgcttc atctttatca aaacaaagca taactctttt atctttaaac acagtgagta
     1501 tttcttctct aaaactgaaa gttcctgcaa agctaataaa caaggttttt gaatcttgtt
     1561 tgtagtaatt tcttgctgat aagcaatcaa tgtgtccttc ggtgattact attttttcac
     1621 attcctttaa taatttattt tctaaaccaa aaggcattgc aaaaacaata ttaccgcagg
     1681 aaatatttac ttctttagct ccattatagg cactatcaat aacacgaaga gaaaaaccca
     1741 caaccatatt tgagtaaaga tcaaaatttg gaacaagagc tacattaaaa gcatatttcc
     1801 aaacttgttt ctctttactg aaaattttaa actcaattaa atcttctata ggaaaatatt
     1861 cttttaaaag attttcaagt tcttttatat tgttaaaatt taaaaaacca attttttcaa
     1921 ctaaactcaa atccttaata cctcttttta gataataaag gttttttgct ttttgttcag
     1981 ttgataaaga aaagcgatag atagttgtat aaactaactt taatttttgt gcttttgtta
     2041 atgttgaata attttgcaca aaaggagcta atttttcaac ttctacatat tttttattag
     2101 gatcaaaaaa caaataatct ttcgctttag gttttggttt ttcaaatacc tttttatagg
     2161 ttgcttgtat tccatttaaa aatggaatat taaattgtga atgcaaatat tcacaagctt
     2221 ctttaaaatt gccattaaac atggttttta caacattgac aggatttcca cccactccgc
     2281 atgcaaagca atgacaagta ttagtacttt cataaatgcc taaagaagca ttatgatcgt
     2341 tgtttttgtg tgcagttata ttaaagcagt gtataatcct tttatttttg tcgctaattg
     2401 cacctaaaga ctccaagaca tccataatag gaatattatt gagtctttct atgtcgtatt
     2461 tcatattttt cctttcttag tttagcacca aacttaaaag tttggcacaa gattaaaaat
     2521 taattagttt actttcaaag ctttaagtac ttcgtaatat tctaaataac cttcaaactt
     2581 atatatcaat tcttcccaag catcatttac atcatcttct gtttcaagaa ccctatatat
     2641 gccatactgt tttaagtcaa gctgaacatt gtctatgaaa acttttaaag cttcattgta
     2701 atcatcataa agcattacgg cattctcaat atcaaattcg cattgattga ttagtggttg
     2761 cttaagaatt gcatagactt ttttaacctt tttatcttca ggcaaaaaag atttttctaa
     2821 agtaagcatg ttttcttgat caatctcata atctttaaaa taaccatcag gaattaactc
     2881 caataatgat tggacattgc taccgcaata gcaattaatg acttttaaat catcaaccaa
     2941 gcaataatta tcatgcactt cacaatcaat attgttttct tccaactcca tttttacttt
     3001 ttccaaatct tctatatttt gtaaataata tttttgcttt tgaatgtccc atagaaaaaa
     3061 aactgtatat cctaaaggat cttttccttc tctaacctca aaatccatat agttaagaat
     3121 ttctacaatt cttacatcca atagattagt aggtgttgtg attttttcag tatttttatc
     3181 aataaccaag caagaatgat taaaacacag ataatcatct attaaagact gtaaagtctt
     3241 tttataaaga tcactcaagc tcttttcaaa agcgtttctt gaaatacctg ttgttgcgaa
     3301 gtttttttca aaaatatcca attcatcatc ttttaaaaca taataagttg aatctttata
     3361 agaaaaagta taaggtgtat agttgtgttt tttaaagaag cctataaacc tatcatcgca
     3421 ttcattttta ccttcattta gcctattcaa agcatcaata ttaataaaaa caggaagttc
     3481 tgtgttcaca tttttaatgc tttttctgct ttcgtatatt ttaaacgcat tgtcaaaacc
     3541 ttcacgagca atattaagaa tgtgatgatc taacaaagca atactcgctc ctttatcaaa
     3601 tttttttgat gctacaggag caagtttgat aagttcttga gagcattttc tatatatctt
     3661 aaatagctct tcactttcta attgatagtc ataagccttt attgagttta ttttataacc
     3721 aagccctgct acggttttaa ttattgcatt tatttcattc attgtgttca tttttaattc
     3781 ctttctgtat tttcaagaca aaattttgta tattcgttaa gctcattgtc aaacatgaca
     3841 tattctttta ttcttttcaa gaaagattct gcatcatcgc aaagaaaaga agcttgatat
     3901 ctgccatcaa ttcccatttc gactttatta atgaatagat ctctatctat atcatcaaca
     3961 atctcttcag gaactgagct taacagcatt gaataatgga ggctataaac tatatcctct
     4021 acgctttgtt cattgttagg ttcattatca cctttaatat gatattcgac aatataactt
     4081 ttaaaatcat cgatttgctt gtctgtgaag cttagctcat ttttttatta tacattgcac
     4141 aacaatcttg caaggcataa actaaagcat taatctcagt ttcatttgct acattatcta
     4201 aatcatagtg tttaattaaa tccttagaca tttctgtgaa ttttttcata tactttcctt
     4261 tgtattgttt aaaatgtagt atttgtattt aattaggcag caaaacgctc aagtgtttga
     4321 agcatttgtt ttttatcgta accgataaat gtatcttcag gaatatcatc tacgtagagc
     4381 gtataaatat ttccctccaa ataagcctca agctctttga tgaaaatctc aatatttttg
     4441 taaagcttgt ctttaaactt tgcactgatt ctttttacat caaaaatttc tctcacttgt
     4501 tcttttgtat aataagcgta tcctgcacat ccacaatccc aaccataaga ataacttcta
     4561 ggtttatttc cttcagaatg caaagctata ccactatgaa tataagcccc tactctaatc
     4621 caaatataac ctttgctatt caaatagtct tctatttctt gaatgttttc aaaatctgtg
     4681 caatctaatc catctatctc tttttcacca atattatatc tttttaaaag gttgaaaaaa
     4741 gaaggatttc cacaatcatc aaatggatta taaaattcat cttgttcgat tctgatttct
     4801 ttaccatcca aagtaaaaac actgatacct ttgtgcatta attttttaaa catattttct
     4861 aaaacatttt tttccataat ttttcctttt ctattttttt taaattaaaa aaagaatag
//
LOCUS       DARAII010000121         4916 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.122, whole genome shotgun sequence.
ACCESSION   DARAII010000121 DARAII010000000
VERSION     DARAII010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4916)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4916)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4916
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.122"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..864
                     /locus_tag="SB143_001701"
     CDS             <1..864
                     /locus_tag="SB143_001701"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEF9750208.1"
                     /translation="TIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKLKS
                     DSNKEIVEFSFKGPKEIYGKDLNNDQVEVVNTDAYLATINEDAELKFTLIIEKGIGYV
                     PSEEIKELLNDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPN
                     EAFQNALEAMYKQLSVFDKITNVRSIIKSQATSNELENTKLLQNITDLNLSARSYNCL
                     EKAGIVYIGELALMSVNELAGLKNLGKKSLDEIKSIMESIGFPVGTSKLSDNKDLLKK
                     KIDELKAQNEG"
     gene            868..1221
                     /gene="rplQ"
                     /locus_tag="SB143_001702"
     CDS             868..1221
                     /gene="rplQ"
                     /locus_tag="SB143_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEF9750209.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFAALQDKNATNKLVTEIAPNFKERNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            1439..2338
                     /gene="hisG"
                     /locus_tag="SB143_001703"
     CDS             1439..2338
                     /gene="hisG"
                     /locus_tag="SB143_001703"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEF9750210.1"
                     /translation="MQENSRLRIAIQKSGRLSKESVELLNKCGIKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERKSLGEEANYKLLTKLDFG
                     YCRLSLALPQEKKFDNLKDFENLRIATSYPQLLKRFMKENNIHYKNCMLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYQSRACLIQKQNTLSDEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIRSLLPGVEKPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            2346..3632
                     /gene="hisD"
                     /locus_tag="SB143_001704"
     CDS             2346..3632
                     /gene="hisD"
                     /locus_tag="SB143_001704"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEF9750211.1"
                     /translation="MQIINFNELDEKQKQEVLKRPAIAAKDEISQIVSSIIKEVREKG
                     DEALIEQALKFDKAQISSIKVSEEELENASLRLNKDLKEAILIAYENIKKFHEAQIPK
                     EIAIETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAQCEKIVLASPA
                     KINDATLFCAKLCGVDEIYQMGGAGAIAALAYGTKSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADEKANVKFVASDLLSQAEHGADSQVILVCLSKEFAQ
                     GASDEVSRQLENLPRKELASKSIANSKIIIAKNLDEALLISNLYAPEHLIIQTQNPRE
                     LLDKVKHAGSVFLGELSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMSVQEL
                     SKEGFLNLGKSVEILAANEHLDAHKNAVTFRLESLK"
     gene            3629..4690
                     /gene="hisB"
                     /locus_tag="SB143_001705"
     CDS             3629..4690
                     /gene="hisB"
                     /locus_tag="SB143_001705"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEF9750212.1"
                     /translation="MSEKILFIDRDGTIIEEPKSDFQIDSLEKLRFEKGAIPTLLKLK
                     NFGFKFVLVSNQDGLGTQSFPKEDFEIAHQKMLDILQSCGIEFKDIFICPHFENENCE
                     CRKPKTALLDEYIKHNLYNKEQSFVIGDRDTDMILASNLGVRGLKYSENLTWKEIEEE
                     ILNSFRTASISRITKETNIHVKVCLNGGKIAINTGVPFFDHMLEQIAVHGGIGLEISC
                     KGDLEIDEHHSVEDVALALGSAIKQALGDKIGITRYGFVLPMDECLASCAIDFCNRPH
                     LVYKAKFKKEKLGELSTEMIEHFFYSLSYSMGVSLHLKVKGKNDHHKAEGLFKAFAKA
                     LKMAVKIESENLASSKGVI"
     gene            4687..>4916
                     /locus_tag="SB143_001706"
     CDS             4687..>4916
                     /locus_tag="SB143_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEF9750213.1"
                     /translation="MKLIIIDTACANLASLKFCLDRLGFNAKISRDLKDLENADKLFL
                     PGVGTAAKAMSNLESFNLTNFIKNTKKPLLGI"
BASE COUNT         1832 a          757 c          899 g         1428 t
ORIGIN      
        1 actataggtt atgctccaac cgctatccat atcgatggtg tagcgcatga atttgatagt
       61 atgcgtggta tgcttgaaga tgtagcactt tttatcatca atcttaaaaa attacgattc
      121 aaacttaaaa gcgattccaa caaagaaatc gttgagttta gtttcaaagg ccctaaagaa
      181 atttatggta aagatctaaa caacgatcaa gttgaagtcg taaatacaga tgcatattta
      241 gcaacgatca atgaagatgc tgaacttaaa tttactctta tcatagaaaa aggcattggt
      301 tatgtaccaa gcgaagagat taaagagctt ttaaatgatc caaaattcat agctcttgat
      361 gcttttttca ctcctgtaag agaggcgact tatgatattg agaaagtttt atttgaagac
      421 aatcctgact atgaaaaagt agttttaaca gtaactactg atggacaaat cactccaaac
      481 gaagcttttc aaaatgcttt agaagctatg tataagcaat tatcagtatt tgataagatt
      541 acaaatgtta gaagcatcat aaaaagtcaa gctacaagca atgaattaga aaatactaaa
      601 ttattgcaaa atattactga tctaaattta agtgcaagaa gttacaattg ccttgaaaaa
      661 gcaggaattg tttatatcgg agagcttgct ttaatgagcg ttaatgaact tgctggactt
      721 aaaaatttag gcaaaaaatc tttagatgaa attaaaagca ttatggaaag cataggcttc
      781 cctgtgggta cttctaagct tagtgataat aaagatttgc ttaagaaaaa aatcgatgaa
      841 ttaaaagcac aaaacgaagg ataaagaatg agacataaac acggatatag aaaacttggc
      901 agaacttcat ctcatcgtgc tgccttgtta aaaaatttaa ctatagcttt agttaatagc
      961 ggtaaaatcg aaacaactct accaaaagct aaagaattaa gaggctatgt agaaagattg
     1021 attactagag caagacttgg agattttaac gctcacagag cagtttttgc tgctttacaa
     1081 gataaaaatg ctacaaataa acttgttaca gaaatagctc caaatttcaa agaaagaaat
     1141 ggtggctata caagaattat caaaacaaga attcgccgcg gtgacgcagc tgaaatggct
     1201 tttattgaat ttgtagccta aaaattccag cttaagctgg aattttaaaa ttcatttttc
     1261 ttatattttt ctaatttact ccaacttttt ataaatctaa aaattcaaaa tcatctttta
     1321 aatccaattc taaaaataaa aattcttaaa tgattattta aaaaataatt tttagccaaa
     1381 tttttaacta cttatgctaa tataattttt tatttttata aatgcaagga tataaaatat
     1441 gcaagaaaat tctcgtttgc gtatagctat acaaaaatca ggcagactct ctaaagaatc
     1501 cgtagaactt ttaaacaaat gcggaattaa aatgcatata catgagcaaa gtctcatagc
     1561 tttttcaacc aatctaccta tagatatttt aagagttaga gatgatgaca tacctggtct
     1621 tatctttgat ggagtcgtag atcttggcat tataggcgaa aatgttttgg aagaaaatga
     1681 actcgaaaga aaaagcttag gcgaggaagc aaattacaag cttttaacaa agcttgattt
     1741 tggttattgt agactttcac ttgccttgcc tcaagagaaa aaatttgata atttgaaaga
     1801 ttttgaaaat ttaagaatcg ccacttctta tccacagctt ttaaaacgct ttatgaaaga
     1861 aaacaacatt cattataaaa attgtatgct tacaggttca gttgaagtag ctccaagagc
     1921 aaatttagcc gatgcgattt gtgatcttgt ttcaagcggt gcaacactac aagcaaacaa
     1981 tcttaaagaa gttaaagtta tttaccaatc tcgtgcttgt ttgatacaaa agcaaaatac
     2041 tctaagcgat gaaaaacaag ctttggttga taaaatcatg cttcgcgttg caggagtaat
     2101 gcaagcaagg gaaagcaaat acatcatgct tcatgctcca aaagaaaaac ttgataaaat
     2161 ccgatcccta cttccaggcg tagaaaagcc tactatcttg cctttagcac acgatgaaaa
     2221 aaatgtagcc ttgcatatgg taagtaaaga aaatcttttt tgggaaacta tggaggcctt
     2281 aaaagaagaa ggtgcgagtt cgattttggt tttacctatt gaaaaaatgt taaagtgagt
     2341 aaaaaatgca aataataaat tttaacgaat tagacgaaaa acaaaaacaa gaagtattaa
     2401 aacgccctgc aatagcagca aaagatgaaa tttcacagat agtgagctct atcatcaaag
     2461 aagttagaga aaaaggcgat gaagctttga tagaacaagc tttaaaattt gacaaagccc
     2521 aaatttcaag cattaaagta agtgaagaag agcttgaaaa cgcaagctta cgcttgaata
     2581 aagacttaaa agaagcgatt ttaatcgctt atgaaaatat caaaaaattc cacgaagcac
     2641 aaattccaaa agaaatagcc attgaaacca ccaagggtgt aaaatgcgaa gttttaacac
     2701 gccctattga aaaagtagga ctttatatac cagggggttt ggcgccttta ttttcaacgg
     2761 ttttaatgct agcaattcct gcaaaaatag ctcaatgtga aaaaatcgtt ttggcaagcc
     2821 ctgctaaaat aaacgatgcc acactttttt gcgccaagct ttgcggagta gatgaaattt
     2881 atcaaatggg tggtgcagga gccatagcag cactagctta tggaaccaaa agcgttttaa
     2941 aagtagataa aatctttggg ccaggcaatg cctttgttac cgaagctaaa cgccaagtaa
     3001 gtagtgatat aaacggagct gctatagata tgcaagctgg acctagtgaa gttttagtca
     3061 tagcagatga gaaagcaaat gttaaatttg tagcaagcga cttgctttca caagctgaac
     3121 acggcgcaga ttctcaagtg attttagtat gcttaagcaa agaatttgca caaggtgcga
     3181 gtgatgaagt aagccgccaa cttgaaaatt taccaagaaa agaattagcg tctaaaagca
     3241 ttgcaaattc taaaatcatc attgcaaaaa acttagatga agctctttta atctcaaatc
     3301 tttacgcacc tgagcactta atcatacaaa cacaaaatcc tcgcgaactt ttagataaag
     3361 tcaaacacgc tggatctgta tttttaggtg agttaagtcc agaatccatg ggtgattacg
     3421 caagcggaac aaatcatgtc ttgccaactt atggacttac taaaacgcat tctagcttgg
     3481 gtttagctga ttttagtaaa agaatgagcg tacaagaact tagcaaagaa ggctttttaa
     3541 atttaggaaa aagtgttgaa attttagctg caaatgaaca tttagacgca cataaaaatg
     3601 cagtaacttt tcgcttagaa agtctaaaat gagtgaaaaa atccttttta tcgatagaga
     3661 tggcaccatc atagaagaac caaagagcga ttttcaaatc gatagccttg aaaaacttcg
     3721 ttttgaaaaa ggtgctatcc ctactctttt aaaacttaaa aattttggct ttaaatttgt
     3781 gcttgtttct aatcaagatg gccttggaac tcaaagcttt cctaaagaag attttgaaat
     3841 agcacatcaa aaaatgttgg atattttaca aagctgtggt atagaattta aagacatttt
     3901 catttgtcca cattttgaaa atgaaaattg cgagtgtaga aagccaaaaa ccgccctttt
     3961 agatgagtat atcaagcaca atctttacaa taaagaacaa agctttgtga tcggtgatcg
     4021 agatactgat atgatcctag cttcaaattt gggtgttcgt gggttaaaat acagcgagaa
     4081 tttgacttgg aaagagatag aagaagagat cttaaattcc tttcgcaccg caagcatttc
     4141 gcgtatcact aaagaaacca atatccatgt aaaagtatgt ttaaatggcg gaaagattgc
     4201 tattaataca ggagttcctt ttttcgatca tatgcttgag caaatcgcag tacatggggg
     4261 cataggactt gaaatttctt gcaagggcga tttagaaatt gatgagcatc atagcgttga
     4321 agatgttgct ttagctttag gaagtgccat aaaacaagct ttaggagata agataggcat
     4381 cacaagatat ggctttgtct tgcctatgga tgagtgtttg gcaagttgtg cgatcgattt
     4441 ttgcaaccgt ccgcatttgg tttataaagc caaatttaaa aaggaaaaat taggcgaatt
     4501 aagtactgaa atgatagaac acttttttta ctcgctaagc tactcaatgg gagtgagttt
     4561 acacttaaag gttaaaggta aaaacgatca tcacaaagcc gaagggcttt ttaaagcttt
     4621 tgcaaaagcc ttaaaaatgg ctgtaaaaat tgaaagtgaa aatttagcca gctctaaagg
     4681 ggtaatatga aactgatcat catcgataca gcatgtgcaa atttggcatc tttgaaattt
     4741 tgtcttgata gactaggctt taatgctaaa atcagtagag atttaaaaga tttagaaaat
     4801 gcggataagc tttttttacc aggagttgga acagcagcaa aagcaatgag caatttagaa
     4861 agctttaatc taacaaattt tatcaaaaat accaaaaaac ccttacttgg aatttg
//
LOCUS       DARAII010000122         4870 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.123, whole genome shotgun sequence.
ACCESSION   DARAII010000122 DARAII010000000
VERSION     DARAII010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4870)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4870)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4870
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.123"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1247
                     /locus_tag="SB143_001707"
     CDS             <1..1247
                     /locus_tag="SB143_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase II"
                     /protein_id="HEF9750214.1"
                     /translation="LICAKKGYEDKVIEIFKKWNLDAVVMGEVTDTGKMELFWHDELV
                     GLIPIDPLSEKAPILDRPVSKPKYLNEIKDYNFTLKMSQQELFEKMLKNENINNKAFI
                     YDQFDSSVQTNTIKADGALGASVIRIKENGASVAMAIECNSRLNYVNPKIGAALAVAS
                     AGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFAQGCEGIKEACKELNTPVVSGNVSL
                     YNETEGVSIFPSPTIVNVGVLEDANKTLKANFEKENTIVYLLGESFGEFAASMAMKIQ
                     DKKVAGSLKELDYKAELALWNLLYTANQNSLFECANSVGVGGIAMTLAKMFAISSMGA
                     NLNSGFSDEKMIFDESASRAIVGLDKENEEAFLKLAHELGVKATKLGFSTKEQSFKLD
                     SINLSKDELNKLYFDSFKEQIQ"
     gene            1244..2014
                     /locus_tag="SB143_001708"
     CDS             1244..2014
                     /locus_tag="SB143_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEF9750215.1"
                     /translation="MIFVLIILTILVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERIDEFKRCMNYYVIALLAKIAKSDGRVSENEAEMISQILDANAKDERERAFLKAS
                     FNEHKENIHDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALVDADFSAKKREILEQIA
                     KAFDIAKSELDNFIASISNLKSTKKELSLDEAYRILELSNNADLNAVKKQYRALAKKY
                     HPDILNANNVSEEELKKGVEKFQKINEAYEKIKKHLEK"
     gene            2131..3663
                     /gene="purH"
                     /locus_tag="SB143_001709"
     CDS             2131..3663
                     /gene="purH"
                     /locus_tag="SB143_001709"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEF9750216.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFELLSTGGTFKLLKENGVKV
                     VEVSEFTKSPELFEGRVKTLHPKIHGGILHKRSDESHIKQAKENGILDIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKTIEALKKGEND
                     EKFRLNLMIKAYEHTANYDAYIANYMNERFNRGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSTNFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSISAYGGVVAVNGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPYLIRSFDSYDFKHIDGGFVYQNSDEVGEDELKNAKLVSQREASQ
                     VEIQDLEIAMKVATLTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIVKAQEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVIQAANEYGIALYFTGVRHF
                     LH"
     gene            3758..>4870
                     /locus_tag="SB143_001710"
     CDS             3758..>4870
                     /locus_tag="SB143_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEF9750217.1"
                     /translation="MFRTIGFKVSAAIFVVLVLSFIAMQLILNLDFKNTADKMSKSNL
                     NTVSSSVFQTMRMAMNLGDPEKIQEAIEDAKTIEGISDIKIYPSKETIELFEIKNPKI
                     SQEKLIIDQFTQPNLISLEQKLDNINHLRLIRPLIADESCIACHANANLGSVLGVMDV
                     YHSLENIEKDIAKTSRSYIVIFTIALIFTLVVVLFVLKMVVGNPIMELLSHAKELAQG
                     SGNLRARIRVKGRDEIAKACEYINQFIEKTQKTVSSASLNSKNVEKQSILLNSNAIEL
                     NEISTSSHQKIDSSFKLGVDIGADLDEISNLSSDANKANDKSYQLLDQMIHSLLEIDK
                     KVSDLVQNENNLALKIENMVKYAQNIQKATQMMGEIA"
BASE COUNT         1808 a          585 c          992 g         1485 t
ORIGIN      
        1 tgttaatttg tgctaaaaaa ggctatgaag ataaggttat agaaatcttt aaaaaatgga
       61 atttggatgc tgtggttatg ggtgaagtaa ctgatactgg aaaaatggag cttttttggc
      121 atgatgagct tgtagggctt atacctattg atcctttgag tgaaaaagcg ccgattttgg
      181 atcgtcctgt gagtaaacca aagtatttaa atgaaattaa agattataac ttcacgctta
      241 aaatgtctca acaagagctt tttgaaaaaa tgctaaaaaa tgaaaacatt aacaacaaag
      301 cctttattta tgatcagttt gattctagtg tgcaaacaaa tactataaaa gcagatggag
      361 ctttaggtgc gagtgtgata cgcatcaaag aaaatggtgc aagtgtagca atggctatag
      421 agtgtaattc gcgtttaaat tatgtaaatc ctaaaatagg agcagcttta gcagtagctt
      481 cagcaggaag aaaagttgct tgcacggggg ctaagccttt ggcaataagt gattgtttaa
      541 attatggaaa tccgcaaaat cctgaagtga tgtggcaatt tgcacaaggt tgcgaaggca
      601 ttaaagaagc ttgtaaagag ttaaataccc cagtagtaag cggcaatgtt tcactttata
      661 atgaaactga aggtgttagc atatttccaa gtccaactat agttaatgtg ggcgttttag
      721 aagatgcaaa taaaacccta aaagcaaatt ttgaaaaaga aaatactatc gtttatcttt
      781 taggtgaaag ttttggagaa tttgcggctt caatggctat gaaaatacag gataaaaagg
      841 tagcaggtag tctcaaagag cttgattata aggctgaact tgcactttgg aatttgcttt
      901 atacagcaaa tcaaaactcc ttgtttgaat gtgctaatag cgtgggcgta ggtggtattg
      961 ctatgacttt agcaaaaatg tttgctattt ctagtatggg tgcaaattta aatagtggct
     1021 ttagtgatga aaaaatgatt tttgatgaaa gtgctagtcg tgctatcgta ggccttgata
     1081 aagaaaatga agaagcattt ttaaaactag cacatgaatt gggtgtaaaa gctacaaaac
     1141 taggttttag cactaaagag caaagtttta aacttgatag tataaattta agcaaagacg
     1201 aacttaataa actttatttt gatagcttta aagagcaaat tcaatgatat ttgttttaat
     1261 tattttaact atcttagtgt tttattggta ttataaaact tggggaaagc aagatttttt
     1321 aaattcagcc acgcgaggag ccaaaggttt tgctaaaggc tttgctcgcg gagttatgga
     1381 agagaggata gatgaattta aaaggtgtat gaattactat gtcatcgcac ttttggcaaa
     1441 gatagcaaaa agtgatggta gggtaagcga aaatgaagca gaaatgatca gtcaaatttt
     1501 agatgcaaac gccaaagacg aaagagaaag ggctttttta aaagcaagct ttaatgagca
     1561 taaagaaaat atccacgatg ctttttatgt ggcaaaggat tttttaaaag aagttccttt
     1621 accgaaaaat gaacgcttta atgtgcttcg cgtacttgtg tttatggcct tggttgatgc
     1681 agattttagt gcaaaaaagc gtgaaatttt agagcagatt gcaaaagctt ttgatattgc
     1741 aaaaagtgag cttgataatt ttattgcgag tatttcaaat ttaaaaagta ctaaaaaaga
     1801 actaagcctt gatgaggctt atcgtatttt agagctttca aataatgcgg atttaaacgc
     1861 ggtaaaaaaa caatatagag ctttagctaa aaaatatcac cctgatattt taaatgcaaa
     1921 caatgtcagc gaagaagagc ttaaaaaagg tgtagaaaaa tttcaaaaaa tcaacgaagc
     1981 ttatgaaaaa attaaaaagc atttagaaaa atgattttaa aagaaaaata ttttccttta
     2041 agaatcttat ctaagaacga gtggacttta tctagtataa attaaattta taaaaatatt
     2101 tcaaacgaaa tttaaaaaaa aggagtgaat atgagagcgt tattaagtgt gagcgataaa
     2161 gaaggtatag tagaatttgg aaaagaactt gaaaatctag gttttgagct actttcaacg
     2221 ggcggtactt ttaagctttt aaaagaaaat ggagtaaagg ttgtagaagt aagtgaattt
     2281 acaaaaagtc ctgagctttt tgaagggcgc gtaaaaactt tgcatccaaa aattcacggc
     2341 ggaattttac ataaaagaag cgatgaaagt catatcaagc aagcaaaaga aaatggaatt
     2401 ttagacattg atttagtttg tgtaaattta tatcctttta aaaaaaccac tataatgagc
     2461 gatgattttg atgaaattat cgaaaatatc gatataggcg gccctgcgat gataagaagt
     2521 gcggctaaaa attataaaga tgtgatggtg ctttgcgatc cgcttgatta tgaaaagacg
     2581 attgaagctt taaaaaaggg tgaaaatgat gagaaatttc gcctaaattt gatgataaaa
     2641 gcttatgagc atacggcaaa ttatgatgct tatattgcaa attatatgaa tgaaagattt
     2701 aatagggggt ttggagcgag taaattcata gtaggtcaaa aagtttttga tacaaaatat
     2761 ggcgaaaatc cacatcaaaa aggagctttg tatgaatttg atgccttttt tagtaccaat
     2821 tttaaggctc taaaaggcga ggcaagtttt aacaatctta ctgatattaa cgcagcttta
     2881 aatttagcaa gtagttttga taaggctcct gctattgcta tcgtaaaaca tggcaatcct
     2941 tgcggttttg cgataaaaga aaatttagta caaagctata tacatgcttt aaaatgcgat
     3001 agtataagtg cttatggagg agtggttgct gtaaatggaa cccttgatga ggctttagca
     3061 aataagatca atgaaattta tgtagaagtg attatcgcag caaatgtaga tgaaaaagct
     3121 ttggctgtat ttgagggtaa aaagcgtatt aaaatcttta ctcaagaaag tccttatttg
     3181 attagaagtt ttgatagcta tgattttaaa catattgatg ggggctttgt atatcaaaat
     3241 agcgatgaag tgggtgaaga cgagcttaaa aatgccaagc ttgtaagcca aagagaagca
     3301 agtcaagtag aaattcaaga tcttgagatt gctatgaaag ttgcaactct tacaaaatca
     3361 aacaatgttg tttatgtaaa aaatggcgct atggtagcca taggaatggg tatgacaagt
     3421 aggattgatg cggctaaagc agctattgtc aaagcacaag aaatggggct tgatttgcaa
     3481 ggttgcgttt tagctagtga agcctttttt cctttcagag atagcataga cgaagcaagt
     3541 aaagtagggg ttaaagccat agtagaacca ggtggaagca taagagatga tgaagtgata
     3601 caagcagcaa atgagtatgg tatagcgctt tattttacag gagtgagaca ttttttacat
     3661 taattgagtg tgttaaaata agatataatt tatattattt aaataatttt aaacaaaaat
     3721 aaagtaaaat aaaataaatt tttaaagaaa gaaaaaaatg tttagaacta taggttttaa
     3781 agtttctgcg gcgatttttg ttgttttggt gttgagtttt attgctatgc aattgatttt
     3841 aaatttagac tttaaaaata ccgcagataa gatgagtaaa tctaatttaa ataccgttag
     3901 ttcttctgtc tttcaaacca tgagaatggc tatgaattta ggtgatcctg aaaaaattca
     3961 agaagctatt gaagatgcta aaacgataga aggtattagt gatattaaaa tttacccttc
     4021 gaaagaaacc atagaacttt ttgagattaa aaaccctaaa atttcacaag aaaagctcat
     4081 tatagatcaa tttacacagc ctaatttaat ttctttagag caaaagcttg ataatattaa
     4141 tcacctaagg cttattcgtc ctttgatcgc agatgagagt tgtatagctt gtcatgccaa
     4201 tgcaaatttg ggtagtgttt tgggtgttat ggatgtatat cattctttag aaaacataga
     4261 aaaagatatt gcaaaaacga gtagatctta tatagtgatt tttactatag ctttaatttt
     4321 tacgcttgta gtggtacttt ttgtgcttaa aatggttgta ggaaatccta ttatggaact
     4381 tttaagccat gccaaagaat tagcacaagg aagtgggaat ttaagagcta ggataagggt
     4441 taaagggcgt gatgaaatcg ctaaagcatg cgagtatatt aaccaattta tagagaaaac
     4501 tcaaaaaaca gtaagcagtg caagtcttaa ctccaaaaat gtagaaaaac aaagcatact
     4561 tttaaattct aatgctatag agcttaatga aatttcaact tctagtcatc aaaagataga
     4621 ttctagtttt aagctaggcg ttgatatagg ggcggatttg gatgaaatat ctaatctttc
     4681 tagcgatgca aataaagcaa atgataaatc ttatcagctc ttagatcaga tgatacactc
     4741 acttcttgaa attgataaaa aagtaagtga tttagtgcaa aatgaaaaca acttggcact
     4801 aaaaattgaa aatatggtca aatatgcaca aaatatacaa aaagctacac aaatgatggg
     4861 cgaaatagca
//
LOCUS       DARAII010000123         4815 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.125, whole genome shotgun sequence.
ACCESSION   DARAII010000123 DARAII010000000
VERSION     DARAII010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4815
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.125"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..780
                     /locus_tag="SB143_001711"
     CDS             <1..780
                     /locus_tag="SB143_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HEF9750218.1"
                     /translation="RFIHQNSKRSQKPFVAINMAAIPSNLIESELFGFEKGAFTDANA
                     TKIGLFEMANNGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLQDKIDNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLENTCKEYELEMK
                     KISQEAQKALLEYNFPGNIRELISIVQRACILSEGLEISEQDLFLEARSVKKDVKNLE
                     KELLEQILEQCEFDKEKASNELGMSIENLNNKIKQYKIKEK"
     gene            780..1811
                     /locus_tag="SB143_001712"
     CDS             780..1811
                     /locus_tag="SB143_001712"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEF9750219.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSAG
                     NQIEFRGKSYTIKELTEDVFRENPVDIAFFSAGGSVSEKYAKFAVEAGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKEWKKTGIIANPNCSTIQMVHILKPLNDAFDLKRVDVSTY
                     QAASGAGKEGMEELVRAMQSFFAFKLDEFEAQTFPHTLALNLIPQIDVFMDNGYTKEE
                     LKMINETQKILHKNLEISATCVRVPVLRSHSEAITMHFAKEVDVNKARDILQNAPSVV
                     VIDEPKDKKYPMPLMTSDTNETYVGRIRLDVTHKNILHLWCVADQIRVGAATNAVRIA
                     QKWLELENK"
     gene            1825..2331
                     /locus_tag="SB143_001713"
     CDS             1825..2331
                     /locus_tag="SB143_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEF9750220.1"
                     /translation="MLEKIFESLLVKSRIVTILPVIFGLVGAFVLFFIASYDVLKVIL
                     YTYQYFFSAGIKIDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPTDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            2385..2585
                     /locus_tag="SB143_001714"
     CDS             2385..2585
                     /locus_tag="SB143_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEF9750221.1"
                     /translation="MKKLFLILLAVINVLTFSYAAPLDEVFKDVEVSGVVRYRYETQR
                     VKKTDNKNKKHNVTNRTEITIK"
     gene            2595..3026
                     /locus_tag="SB143_001715"
     CDS             2595..3026
                     /locus_tag="SB143_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002847260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEF9750222.1"
                     /translation="MFRYLTIFSIFVVALFGINLKSFFTYTFDANKQYDMVQAKDLYF
                     KNKCNTCHGDNAEKSVAGSRVLKDMSPEDIKAALVGYTLDGSTSANASQMAFYARNLS
                     HDDMDNIIAYIKGGNFAVDLQVKDLLEEEPPQKTKHNTFLK"
     gene            3062..4186
                     /locus_tag="SB143_001716"
     CDS             3062..4186
                     /locus_tag="SB143_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEF9750223.1"
                     /translation="MKKVTLVFSALALANCLYAKTINLGVVLPLTGPVAAYGQDVFNG
                     IELANKLNAKLDNGDEVKLIVIDTKGDKLETTSAVNRLIAQDKVIGIIGEATTPNTIQ
                     AISIVEDKKIPLIAPVASGDKLLEGKKYASRVCFSDSFQGDKFASYVTKELNLKNAVV
                     IIDQSNVYSLGLAKAFEKSLKENGGKVIKKLAISSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQAKQIGFDKLLAAGDGVNNQTFIDLGSTAVNGVVFTDSFDSSNPSTA
                     RGKTFINEYEKIKGNANLPAFSAMGADAYYVMLNAMNACQNTLTSECINEKIHQTSNY
                     EGVGGIISIDASGNAIRPVVIKEIQDGKQVYKTLINPKEK"
     gene            4186..>4815
                     /locus_tag="SB143_001717"
     CDS             4186..>4815
                     /locus_tag="SB143_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEF9750224.1"
                     /translation="MKKKIILAAALALSLQAKEVNLGVVLPLSGATAAYGQSALEGIK
                     LANEMQSTLANGDKINLVVLDTKGDKIESASAATRLVNQDKVLGLIGEMVTANTLQVM
                     RIAEENKVPLIAPAATGDKLLENKLYSSRVCFMDSFQGSSLAKYAFEKLNHKKAVIVV
                     DQSTDYSLGLAKAFEKEFKAKGGEILKTLRVNSGDKDFKAIATQIKILNP"
BASE COUNT         1720 a          621 c          940 g         1534 t
ORIGIN      
        1 cgttttattc atcaaaattc taaacgctcc caaaagcctt ttgtagctat caatatggct
       61 gccatccctt caaatttgat agaaagtgag ctttttggat ttgaaaaagg ggcatttact
      121 gatgctaatg ccaccaaaat aggacttttt gaaatggcaa ataatggaac tttattttta
      181 gatgaaatag gtgaaatgcc ttatgaaatt caagccaaac tcttaagagc cttgcaagaa
      241 aaagaaatca caagacttgg aagtactaaa agtatcaaaa tagatgtaag gattattagt
      301 gcgaccaatg caaatttgca agataagatc gataatggag aatttagatc ggatttgtat
      361 tatcgtttaa atacagttcc tattaatata ccccctttaa gagaaagaaa agaagaaatt
      421 ttgggcatag cgcaaaaagt tttagaaaat acttgtaaag agtatgagct cgaaatgaaa
      481 aaaataagtc aagaagctca aaaagctttg cttgaatata attttccagg caatataaga
      541 gagcttattt ctatagttca gcgtgcttgt attttaagcg agggattaga aatttcagaa
      601 caagatttat ttttagaagc aagaagtgta aaaaaagatg taaaaaattt agaaaaagaa
      661 ttgctagagc aaattttaga gcaatgtgaa tttgataaag aaaaagcaag caacgaactt
      721 ggaatgagta tagaaaattt aaacaataaa atcaaacaat acaaaataaa ggaaaaataa
      781 tgtcaaaaaa acaaaaaata gctatagttg gagcaacagg tgcggttgga gaagagcttt
      841 taaatgtatt agatgagctt gattttccag tcgagagtat tttgcctttg gctagtgcaa
      901 aaagcgcagg taatcaaata gaatttagag gcaaatctta tacaataaaa gagcttaccg
      961 aggatgtttt tagagaaaat cctgtagata tagctttttt tagtgcaggc ggaagtgtaa
     1021 gtgaaaaata tgctaaattt gctgtagaag caggtgctgt ggtaattgat aacacaagtc
     1081 attttagaat ggaaaaagat gtgcctttag tcgttccaga atgcaatcct gaagatatta
     1141 aagaatggaa aaaaacaggt atcattgcaa atccaaattg ttcaactata caaatggtgc
     1201 atattttaaa acctttaaat gatgcttttg atttaaagcg tgtggatgta agtacctatc
     1261 aagcagcaag tggagcaggt aaggaaggta tggaagaatt ggttcgcgca atgcaaagct
     1321 tttttgcttt caagcttgat gaatttgaag ctcaaacatt tcctcatact ttagcactta
     1381 atttgattcc tcaaattgat gtatttatgg ataatggcta tacaaaagaa gagcttaaaa
     1441 tgatcaatga aacacaaaaa attcttcata aaaatttaga aatttcagct acttgtgtaa
     1501 gagttccagt tttaagaagt catagtgaag caattactat gcattttgca aaagaagtag
     1561 atgtaaataa agcaagagat atactccaaa atgcaccaag tgttgttgtt atagatgaac
     1621 caaaagataa aaaatatcct atgcctttaa tgactagcga tacaaatgaa acctatgtgg
     1681 gtagaattcg cttagatgtt acacataaaa atatacttca tctttggtgc gtagcagatc
     1741 aaattcgcgt aggcgctgcc acaaatgcag tgcgcattgc tcaaaaatgg ttagaattag
     1801 aaaataaata aaaggagtaa aagagtgtta gagaaaattt ttgaatcctt gcttgttaaa
     1861 agtcgtattg ttacaatttt acccgtaata ttcggtcttg tgggcgcttt tgttttattt
     1921 tttattgcaa gctatgatgt tttaaaagta attctttata cttatcaata tttctttagt
     1981 gctggaatca agattgattt acatgaagat gtggtagctt tgattatagg agctgtagat
     2041 ctttatctta tggctttggt tttatttatt ttttcttttg gagtgtatga actttttatt
     2101 agcgagatag aagaatttaa acaaaccaag caaagtaaag tcttggaggt gcatagttta
     2161 gatcagctta aagataagct tgcaaaagtg attatcatgg ttttggtagt aaatttcttt
     2221 caaagggtat tgcaaatgaa atttgctact cctacagata tggcttttct tgccggatct
     2281 attttagctc tttgtgtggg gctttatttt ttacacaagg gcggacattg aggcttgatt
     2341 atcttttttt gatataatta aaattttggt ttgtaagggt gattatgaaa aagctatttt
     2401 tgattttatt ggcggtaatt aatgttttaa ctttttctta tgcggctccc ttagatgaag
     2461 tttttaaaga tgttgaagtt tcgggcgttg tgcgctatag atacgagacg caaagggtta
     2521 aaaaaacaga taataaaaac aaaaaacaca atgttacaaa ccgcaccgaa atcactataa
     2581 aatagaggta ggatatgttt cgttacttga caattttttc gatttttgtt gtagcgcttt
     2641 ttggtataaa tttgaagtct ttttttactt atacttttga tgcaaataaa caatacgata
     2701 tggttcaagc caaggattta tattttaaaa ataaatgcaa tacttgccat ggagataatg
     2761 ctgaaaaaag tgtcgcaggt tctagagtat taaaagatat gtctcctgag gatattaaag
     2821 cggccttggt gggttatact cttgatggta gtacttctgc taatgcttca caaatggctt
     2881 tttatgctag aaatttaagc cacgatgata tggataatat cattgcatat atcaagggtg
     2941 gaaattttgc tgttgatttg caagtgaaag atttattaga agaagaacca ccgcaaaaaa
     3001 cgaaacataa tactttttta aaataaaata ttgagtttaa tttaatgaaa ggatggataa
     3061 gatgaaaaaa gttactttag tttttagtgc cttagctttg gcaaattgtt tatatgcaaa
     3121 aacaattaat ttaggagtag tgttgccatt aacaggacca gtggctgctt atgggcaaga
     3181 tgtttttaat ggtatagaac ttgctaataa attaaatgct aagttagata atggtgatga
     3241 agtaaagtta atcgttattg atactaaagg cgataaactt gaaactacaa gtgcagtaaa
     3301 tcgtcttata gcgcaagata aggttatagg gattatagga gaggctacca cgccaaatac
     3361 tatacaagct atatcaattg tagaagataa aaaaattcca ctcattgctc cagtagcttc
     3421 aggagataaa cttctagagg gcaaaaaata cgcttctcgt gtgtgcttta gcgatagttt
     3481 tcaaggggat aaatttgcga gttatgttac aaaagaatta aaccttaaaa atgctgttgt
     3541 tattatagat caaagtaatg tttattcttt aggacttgca aaagcttttg aaaaatcttt
     3601 aaaagagaat ggcggtaagg tgatcaaaaa acttgcaatc agttcaggcg ataaagattt
     3661 tagagctgta gtttcacagc ttaaaagttt aaatcctgat tttgtttata tgccaattta
     3721 tcatcctgaa gctgctctta ttgctagaca agctaaacaa attggttttg ataaattatt
     3781 agctgctgga gatggggtta ataatcaaac ttttatagat ttgggctcaa ctgctgtaaa
     3841 tggagtggtt tttacagata gttttgactc aagtaaccct tctactgctc gtggtaaaac
     3901 ttttatcaat gaatatgaaa aaataaaagg caatgcaaat cttccagctt tttcagctat
     3961 gggtgcggat gcttattatg taatgctaaa tgctatgaat gcttgccaaa atacacttac
     4021 tagcgagtgt atcaatgaaa aaatccatca aacaagcaat tacgaaggtg tgggtggaat
     4081 tattagcatt gatgcaagcg gtaatgcaat tcgtcctgtt gttataaaag aaatacaaga
     4141 tggcaagcaa gtttataaaa ctttaatcaa tcctaaggaa aagtaatgaa aaagaaaata
     4201 attttagcag cagctttggc tttaagttta caagcaaaag aagtaaattt aggagttgtt
     4261 ttacctttaa gtggggcaac ggcagcttat ggacaaagtg ctttagaggg tataaaatta
     4321 gctaatgaaa tgcaaagtac tttagctaac ggagataaaa tcaatcttgt tgttttggat
     4381 actaagggag ataagatcga atccgcaagt gctgctaccc gccttgtaaa tcaagataag
     4441 gtattaggac ttatcggtga aatggttact gcaaatactt tacaagtaat gcgcatagct
     4501 gaagaaaata aagttcctct tatcgctcct gctgcaacag gagataagct tttagaaaac
     4561 aaattatatt caagtagagt ttgctttatg gatagttttc aaggctcatc tttggcaaaa
     4621 tacgcttttg aaaaattaaa ccacaaaaaa gctgtaattg tggttgatca aagtacggat
     4681 tattctttag gacttgctaa ggcttttgaa aaagaattta aggctaaggg tggtgaaatt
     4741 ttaaaaactc ttagagtaaa ttcaggcgat aaagatttta aagctattgc aactcaaatt
     4801 aaaattttaa atcct
//
LOCUS       DARAII010000124         4789 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.126, whole genome shotgun sequence.
ACCESSION   DARAII010000124 DARAII010000000
VERSION     DARAII010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4789
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.126"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(1..108)
                     /locus_tag="SB143_001718"
                     /pseudo
     CDS             complement(1..108)
                     /locus_tag="SB143_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
     gene            complement(480..1346)
                     /locus_tag="SB143_001719"
     CDS             complement(480..1346)
                     /locus_tag="SB143_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase AadE"
                     /protein_id="HEF9750225.1"
                     /translation="MRSEKEVYDIVLNFAKTDKRIRMVTLEGSRTNTNIPPDDFQDFD
                     ITFFVTDMDSFTSDDKWLDIFGERLILQKPEDMELFPAVEKGFSYLMLFTDDVKIDLT
                     LLPLELIDEYFTWDKLVKLLLDKDNRIVKPPIPTDIDYHLQKPTQRMFDDCCNEFWNT
                     TTYVVKGLCRKEILFAIDHMNDIVRKELLRMISWLIGIKQGFHFSLGKNYKFMKQYVP
                     EELWERLMSTYNMDSYPHMWESFEQCMALFREVSSEVACQLDYQYPLYDEKISNYVIR
                     QKKKYGIEDDNK"
     gene            complement(1522..2067)
                     /locus_tag="SB143_001720"
     CDS             complement(1522..2067)
                     /locus_tag="SB143_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002578721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9750226.1"
                     /translation="MNQGRIIVITGSPGTGKTTTASIVAKESNMDKSVHMHTDDFYHY
                     LSKGAIPPHLPESNEQNLVVIEAFLEAAKRYARGGYDVIVDGIVGPWFLEPWKALAQE
                     DYEVHYIVLRASKEETMKRAIERSKLDRETNIELVETMWKQFSGLGVYESNVIDTTTF
                     TIKDTVSAIKERVACGTSLLS"
     gene            complement(2267..3043)
                     /locus_tag="SB143_001721"
     CDS             complement(2267..3043)
                     /locus_tag="SB143_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002578722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANT(9) family aminoglycoside
                     nucleotidyltransferase"
                     /protein_id="HEF9750227.1"
                     /translation="MNINEFPQQVNQVISIAETILQGQILGIYLYGSATMNGLRPDSD
                     IDILIITKQELSNSIRADLTKQLLKISGSVGCIEKRPLEVTIINQSDIVPLQFPPKCQ
                     YMYGEWLRGEMEAGEYPQACNDPDIMILLWQARKNSITLKGAESKELIPAIPFHEIKK
                     AIRFSLPGLISSFKGDERNVLLTLSRMWFTLVTEEITTKDVAAKWVILKLPERFPPLL
                     TTAKEAYLGNLSDEWETVEKEAMALVEYMKKQIEELLRTE"
     gene            complement(3068..3838)
                     /locus_tag="SB143_001722"
     CDS             complement(3068..3838)
                     /locus_tag="SB143_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002578723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HEF9750228.1"
                     /translation="MPLVKHDYPVLEYDTASKAVFQPGNGKKCFPAKAVFAFLGDEVE
                     NYAHTHDGIQIDEFESATRRYPIYECLYNQEKICLCPAPVGSAAAVQVLEYLIAAGVT
                     KIISVGSCGVLEDIPENRFLIPVSALRDEGTSYHYLPPSREVEISKAGINAIESALSQ
                     KNIPYWEVKTWTTDGFYRETVEMVQYRKEEGCQVVEMECSALAACAKFRKVTWAMLLF
                     SADTLADPHKYQEREWGKTSISIALELALDAVLSVVEE"
     gene            complement(3863..4336)
                     /locus_tag="SB143_001723"
                     /pseudo
     CDS             complement(3863..4336)
                     /locus_tag="SB143_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008666013.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
     gene            complement(4386..>4789)
                     /locus_tag="SB143_001724"
     CDS             complement(4386..>4789)
                     /locus_tag="SB143_001724"
                     /inference="COORDINATES: protein motif:HMM:NF012792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEF9750229.1"
                     /translation="AEQLNILNNEFNGEGETSIDNIGNSLVSNKQEVVIVADEDDILV
                     GFVCVQLKKSFCYDEYMPEITEVYVKPTYRNRGIASEMIIFAENYCSKNYPLHKYELL
                     TGQENLVAQSVYNKLGYVDDNELHLSKRVKR"
BASE COUNT         1276 a         1089 c          830 g         1594 t
ORIGIN      
        1 taaaagaggg tcgccatctg aaatttctgt aagtgcccca agcaatattt cccgctgttc
       61 aggtttcttt actgcaatcg ttgtttggag catagggtgc ggtgcttctt gcgccccgtt
      121 tgctccggca ggaaaacagg ctgaattttt gcgaatggga atgagcaaaa aatcggcctg
      181 ttttcagaga acggcggcag gtatatgaaa gcccccgtcc ctcgtcctac gctccgactt
      241 gtggacaaag tgtcccgaag ttgtggccac actcccggaa aagtagcagg acagcgggca
      301 accgtcaagg ctgaaatgaa cggggttaca cccggccttg accgccgccc gccgccccgc
      361 tggatgggtg gacaaggcgg ccaatccctc aaagtgcttg tccgcgctct ttctgatttt
      421 gaggtattca gtttttcaaa attgaataat caaaataaat tttttcgatt gaaaaaattt
      481 tatttgttat catcttcaat gccatatttt ttcttttgcc gaatcacata attactgatt
      541 ttttcatcat atagtggata ctggtaatcc aactggcatg ccacttctga cgaaacctcc
      601 cggaacaatg ccatacattg ttcaaaggat tcccacatat ggggatagga atccatatta
      661 taagtggaca taagtcgttc ccacaattcc tctgggacat attgcttcat aaatttatag
      721 ttttttccca aactgaaatg aaatccctgt ttgataccaa tcagccagga aatcatgcga
      781 agcaattctt ttcgtactat atcattcata tggtcaatag caaaaagaat ttctttgcgg
      841 cataagccct ttactacata tgttgtagta ttccaaaatt cattacagca atcgtcaaac
      901 attctttgag taggcttctg caagtggtag tctatatccg ttggtattgg cggctttacg
      961 atacggttgt ctttatccaa cagtaacttt accagtttat cccatgtaaa atactcgtct
     1021 atcagttcca gcggcagcaa agttaaatct atcttaacat catcagtaaa cagcattaaa
     1081 tatgaaaatc ccttttctac agctggaaat aattccatat cttccggctt ttgcagaatc
     1141 aacctttcac caaatatatc tagccattta tcatcacttg tgaagctgtc catatccgta
     1201 acaaaaaaag taatatcaaa atcctgaaaa tcatcaggcg gaatatttgt atttgttcta
     1261 gatccttcca aagtaaccat gcgaatgcgt ttgtctgttt ttgcaaaatt caaaacaata
     1321 tcataaactt ccttttctga tctcattttt atctcctcca attattgaaa taggtgtgaa
     1381 gccattttag ggctttcccg ccttgattac cctttagcaa agacgggcgg gactgtcaac
     1441 ggcggcgcat gaaatgcgcc gttcatcttg accgttgact ggctcggctg gctttgctat
     1501 cttcctgaca aatgggaatg tctaagatag taaagacgtc ccacatgcaa ctctttcttt
     1561 tattgcggaa accgtatctt taattgtgaa tgtagttgtg tctatgacat ttgattcata
     1621 tactcccaaa ccggaaaatt gcttccacat tgtttcaact aattcaatat ttgtttctct
     1681 gtctaacttt gagcgttcga tagctcgctt catagtttct tctttactcg ctcttaatac
     1741 aatatagtgt acctcgtaat cttcttgggc aagagctttc catggctcca aaaaccatgg
     1801 cccgacaatc ccatctacaa ttacatcata tccgccacga gcatatcgct ttgcagcttc
     1861 taaaaaggct tcaatgacaa ccagattttg ctcgttggat tctggcaaat gtggtggtat
     1921 tgccccttta ctcaaataat gataaaagtc atctgtgtgc atatgcacag atttatccat
     1981 gtttgattct tttgcgacaa tcgacgcagt tgttgtcttt cctgttcccg gcgaacctgt
     2041 aatcacaata attcttcctt gattcatcta cattctccct cgcaattcag atttaccgct
     2101 ctctttctga ttttggagcg tttcttctct caagattgaa atgggcggga agccatttta
     2161 gggctttccc gccttgattg cccatcagca aagacgggcg ggactgtcaa cggcggcgca
     2221 tttatgcgcc gttcatcttg accgttgatt ggccccgcta actttgctac tctgttctaa
     2281 gtaattcctc aatttgtttt ttcatatatt ctacaagtgc catcgcttcc ttttctactg
     2341 tctcccattc atcagacaaa tttcccaaat aagcttcctt tgccgttgtt agcagggggg
     2401 gaaatctctc cggcaatttt aaaattaccc attttgcggc aacatctttt gtcgtgattt
     2461 cttctgttac taaagtaaac cacattcgtg ataaggttaa taacacattt ctttcatcac
     2521 ccttaaagct ggaaatcaaa ccaggtaaag aaaaccgaat tgctttttta atttcgtgaa
     2581 atgggatagc gggaataagc tctttgcttt ccgccccctt caaagttatg ctattttttc
     2641 ttgcttgcca taataaaatc attatatctg ggtcattgca ggcttgcgga tattctcctg
     2701 cttccatctc tccccttagc cattcaccat acatatactg acattttggc ggaaattgca
     2761 acggaacaat atcagattga ttgataatag ttacctctaa aggtcttttt tcaatacagc
     2821 ctacggagcc agaaattttc aataattgct ttgttagatc tgctctgatt gaattactca
     2881 attcttgttt agtaattatc agtatatcta tatcactatc tggacgcagc ccattcattg
     2941 ttgctgaacc atataaatat atccccaata tttgaccttg taatatggtt tctgctattg
     3001 aaataacttg atttacttgt tgtggaaatt catttatatt cattgtaact cctatatgta
     3061 tttattttta ctcctcaaca actgataaaa cagcgtctaa ggctaattct aaggctatgg
     3121 atatacttgt ttttccccat tctctttctt ggtatttatg agggtctgca agagtatcgg
     3181 ctgaaaaaag cagcatagcc catgtaactt ttctaaattt tgcacacgcc gccaatgcgg
     3241 aacattccat ttctactact tgacatccct cttctttccg atactgaacc atttctactg
     3301 tttctcgata aaaaccgtct gttgtccatg ttttaacttc ccaatatggt atattctttt
     3361 ggcttaaagc agattcaatc gcatttatac cagcctttga aatctctact tctcgggagg
     3421 gaggaagata atggtaagat gttccctcat ctctcaatgc agaaacaggt atcaaaaatc
     3481 tattttccgg gatgtcttcc aatacgccgc aggagccgac ggaaataatc tttgttacac
     3541 ccgctgcaat taaatattct aaaacttgga cggcagcagc acttcccaca ggagccggac
     3601 atagacatat tttctcctga ttataaagac attcataaat aggatatcgt cttgttgcac
     3661 tttcaaattc atctatctgt attccatcat gggtatgtgc ataattttca acctcgtctc
     3721 ctaaaaaagc aaacactgct tttgcaggaa aacatttttt cccatttccc ggctgaaaaa
     3781 cagcttttga tgcggtatcg tactctaaaa cagggtagtc atgctttact aatggcatat
     3841 tattatctcg aataacaggc tattattcta ttcctttcat catctttttt gccaactgct
     3901 tgaacaggtc ggcagtttct tcatccatcg gcgtaagctg tccgatctgt ccggcaacca
     3961 tcgccgctac atcgtcaatg gaaagcgggt tttgcttctg ttccgccaat gcgtcccgca
     4021 tggcttggaa catcgcggcg gtcacagctt ctcccggctg ttccccgttg tctatgtctt
     4081 tcttaatatc ccgcaggata gccaggaaca catttttgat tttttcaatc tccgcttcat
     4141 gttcccccat cttttgggcg ttcaaaagct gtaaatcctg tttcgcttct gcccggtgtt
     4201 ccgggtgttc tttcatcagg tcggacaggg aagccgttgc tatctcgata agctggtttc
     4261 ttgctgttat gccttttgcc gctgtgtcct gaaaataaat ccgtatcaaa tctatcagct
     4321 taggaaaatt cctgttgaac gatgcaccat ttttggcggg tcattcaaca caaactggaa
     4381 tttgactatc tcttaactcg ttttgataaa tgaagttcat tatcatctac ataaccaagt
     4441 ttattatata cagattgtgc aacaagattt tcttgtcctg ttaagagttc gtacttatga
     4501 agtggataat tcttactgca ataattttct gcaaaaataa tcatttcact cgcaatccct
     4561 ctatttctat atgtcggttt aacatacact tccgtaattt caggcatata ttcatcatag
     4621 cagaaagact ttttaagttg aacacataca aatcctacta atatatcatc ttcatcagca
     4681 acgataacaa cctcctgttt attactcaca agagaatttc caatattatc tatgcttgtt
     4741 tcaccttcac cattaaattc gttatttaag atatttaatt gctctgcat
//
LOCUS       DARAII010000125         4773 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.127, whole genome shotgun sequence.
ACCESSION   DARAII010000125 DARAII010000000
VERSION     DARAII010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4773
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.127"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..335
                     /locus_tag="SB143_001725"
     CDS             <1..335
                     /locus_tag="SB143_001725"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEF9750230.1"
                     /translation="VCIVPANSFALARTIEYFKMPDDVLAICLGKSTYARCGIIVNVT
                     PFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDEKCDTTYKDKKGKYQAQTG
                     ITLPRILK"
     gene            385..1389
                     /gene="pseB"
                     /locus_tag="SB143_001726"
     CDS             385..1389
                     /gene="pseB"
                     /locus_tag="SB143_001726"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEF9750231.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSVAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLIEQGAKELPITDTRMTRFWISLEDGVKFVLSNFARM
                     HGGEIFIPKIPSMKITDLAHALAPHLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKLVDQESDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            1391..2521
                     /gene="pseC"
                     /locus_tag="SB143_001727"
     CDS             1391..2521
                     /gene="pseC"
                     /locus_tag="SB143_001727"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEF9750232.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALDIKEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFGGNSVEIDEISSLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELITKIKLLRSHGIIKKRLWDS
                     DMIELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKNY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIRLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            2514..3822
                     /locus_tag="SB143_001728"
                     /pseudo
     CDS             2514..3822
                     /locus_tag="SB143_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
     gene            3819..4610
                     /gene="legH"
                     /locus_tag="SB143_001729"
     CDS             3819..4610
                     /gene="legH"
                     /locus_tag="SB143_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HEF9750233.1"
                     /translation="MKYFLEHNDKKYSDKDLIDAFYQLGIKRGDILCVHTEIFNFGIP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLINIINIVNN
                     TKNFKKNNFAGDHINIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            4641..>4773
                     /locus_tag="SB143_001730"
     CDS             4641..>4773
                     /locus_tag="SB143_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEF9750234.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     "
BASE COUNT         1783 a          737 c          819 g         1434 t
ORIGIN      
        1 atgtatgtat agtccctgct aattcttttg cacttgctag aactatagaa tattttaaaa
       61 tgcctgatga tgttttggct atttgtcttg gaaaaagcac ctatgcaaga tgtggtatca
      121 tcgtaaatgt aactcctttt gaaccaggct ttgaagggca tataaccata gaaatttcaa
      181 ataccactcc cttgcctgca aaaatttatg ctaatgaggg cattgcacaa gtattattct
      241 tacaaggtga tgaaaaatgt gatacaacct ataaggataa aaaaggcaag tatcaagctc
      301 aaacgggtat aaccttgcca agaattttaa aataggaaca cttattgctt taattttaaa
      361 aaaacttaaa caaaggaagg caaaatgttt aacaaaaaaa atatcttaat cacaggcgga
      421 acaggctctt ttggaaaaac ctatactaag gttttattag aaaattataa acctaataaa
      481 atcatcattt actctcgtga tgagctcaaa caatttgaaa tggcaagtgt ttttaatgct
      541 ccttgtatgc gttattttat aggggatgta agagataaag aacgcttaag cgttgctatg
      601 cgtgatgtgg attttgttat acatgctgct gcgatgaagc atgtgcctat tgctgaatat
      661 aaccctatgg aatgtataaa aacaaacatc catggcgctc aaaatgtgat cgatgcttgc
      721 tttgaaaatg gggttaaaaa atgtatcgct cttagcacag acaaggcttg caatcctgta
      781 aatttatacg gtgcaaccaa acttgcaagc gacaagcttt ttgtcgctgc aaacaatata
      841 gcaggcaata aacaaacacg ctttggtgtt acaagatatg gcaatgttgt aggttcaaga
      901 ggatcggtag tacctttctt taaaaagctt attgagcaag gtgctaaaga acttcctatc
      961 accgatacaa gaatgactcg tttttggatc agccttgaag atggagtgaa atttgtactg
     1021 agcaattttg caagaatgca cggaggagaa attttcatcc ctaaaattcc ttcgatgaaa
     1081 atcaccgatc tagctcatgc tttagctcct catttaagcc ataaaatcat aggcataaga
     1141 gcaggagaaa aactacatga aatcatgatt tcaagtgatg atagtcattt aacctatgaa
     1201 tttgaaaact actatgctat aagtcctagt attaagcttg tagatcaaga gagtgatttt
     1261 agtatcaatg ccttgggcga aaaaggacaa aaggtaaaag atggtttttc ttatagttcg
     1321 gataataatc ccttatgggc aagcgaaaaa gaacttttag aaatcatcaa tcacaccgaa
     1381 ggtttttaaa atgcttactt attctcatca aaacatcgat caaagcgata tagatgcgct
     1441 tacaaaagct ttaaaagatg aaattttaac tggaggtaaa aaggtagatg aatttgaaga
     1501 agccctttgc gaatatgtgg gcgtaaaaca cgcttgtgta ttaaactcag ctacttcagc
     1561 tcttcatctt gcctacacag cactagacat caaagaaaaa atcgttttaa ccactccttt
     1621 aaccttcgct gctacggcta atgcagcctt aatagctgga gctaaggtag agtttatcga
     1681 cattaaaaac gatggcaata ttgacgaaaa aaaactagaa gcaagacttt taaaagatag
     1741 taaaaatata ggagctatta gcgtggtgga ttttggggga aatagcgttg aaatagatga
     1801 aatttcaagc cttgctaaaa aatacaatat ccctttaatc gatgatgcaa gccatgcttt
     1861 aggtgcctta tataaaagtg aaaaagtagg aaaaaaagcc gatctttcta tcttttcttt
     1921 tcatcctgtt aaacccatca ctacttttga aggcggggct gtggtgagtg ataatgaaga
     1981 gcttatcacc aaaatcaagc ttttaagaag ccatggtatc attaaaaaaa ggctttggga
     2041 tagcgatatg atagaacttg gctataatta ccgcttaagc gatgttgctt gtgctttagg
     2101 gataaaccag cttaaaaaac tcgatcacaa tcttgaaaaa agagaagaaa ttgcaagttt
     2161 ttacgataaa gaatttgaaa aaaatcctta tttttccacg ataaaaatca aaaattataa
     2221 aaaaagctca agacatttat accctatctt gctttttcct gaattttatt gtcaaaaaga
     2281 agaacttttt gaaagcttac ttcatgcagg aattggcgta caggtacatt ataaaccaac
     2341 ttatgaattt agtttttata aaaaactctt aggagaaatc agactccaaa atgcggataa
     2401 tttttacaaa gccgagctta gcataccttg tcatcaagaa atgaatctaa aagatgcaaa
     2461 atttgtaaaa gatactttat ttagcattct tgaaaaagtt aaaaagggat attgtggata
     2521 agctagactt tagaagtcaa gattttaacc aaactggaaa ggctatgtat gaactagctt
     2581 gtgaactttt tcctatccct aggagtatca cagggcaagg ttttagagct agcttagaaa
     2641 ttttaaataa aactctgggg gggggatata ctcaaatttc actctataaa aagtggcaca
     2701 aaggtttttg actggatagt ccctgatgaa tggaacgcta aagaagccta tatcatcact
     2761 ccagaaggag aaaaaatttg tgattttaaa aagcataatt tacaccttct aaattatagc
     2821 gaagctatcg ataaagaaat cgaacttgaa gaacttcaaa atcatcttta ctccatagaa
     2881 gaaatacccg atgctattcc ttatgtaacg agttattaca aaagacgttg gggattttgt
     2941 ctcacgcata atgaaagaaa aaaactcaaa aaaggcaaat acaaagtcta tatcaatgcg
     3001 aaacatgatg aaaatggggt tttggattat gctgatttta tcctacctag tacgcaaaat
     3061 tcaaaagatg aaattttaat ttcaacctat ctttgtcatc cttctatggc aaataatgag
     3121 cttagtggtc ctgtggtggc tattttccta gcaaaatggc ttttaagttt aaaaaaaaga
     3181 aggtataatt accgctttat catcattcct gaaaccatag gctctatagt ctatcttagc
     3241 aaacatttag agcatttaaa aaaacatgtt aaagcaggct ttgtgctttc ttgcttaggc
     3301 gatgatcatg cttactcact catacacaca cccaaaaaaa acactctaag cgataaagtt
     3361 gccttgcata cgcttaaaaa taaaaaaaat ttcaaagctt ttagtttttt agatcgtgga
     3421 agcgatgaaa gacaatacaa tgctccgctt gtaaatcttg gcattgtagg agtatgtcgc
     3481 acaagatacc tagaatacga acaataccac accagcaaag atgatctcaa ttttatctct
     3541 gaaaaaggtt taatgggtgg acttcaaagc atacaagaaa tgattttaaa tctagaaatc
     3601 aacgccgtat ataaaaacac catagtatgc gagcccaatc ttggcaaaag aggactatat
     3661 cataccctta gcactgccaa tgacattcct ttagcttgta attttctagc ttactgtgat
     3721 ggagagaatg atatcatcga tatagccaat atcttaaata tgcaagctta tgaatttaaa
     3781 gaacttttgg aaaaaataaa attttatgga ctggtaaaat gaaatatttt ttagaacaca
     3841 atgacaaaaa atactccgat aaggatttaa tagatgcttt ttatcaacta ggtataaaaa
     3901 ggggtgatat tttatgcgta catacagaaa tttttaactt tggcatacct ttgctttcta
     3961 gaaatgaatt tttacagact atattagatt gtttttttga agttataggc aaagaaggca
     4021 ctttgatcat gccaaccttt acttatagtt tttgcaaaaa tgaagtttat gacaaaataa
     4081 attccaaaac aaaaatggga gcattaaatg aatattttcg caaacaaaca ggagtaaaac
     4141 gcacaaacga tcctatattt tcttttgcta taaaaggagc aaaagaagaa ttatttttaa
     4201 aagatacaac aagttgtttt ggggaaaatt gtgtttatga ggttttaacc aaagagaatg
     4261 gaaaatatat gacatttgga ggccaaggac atacactaac acattatgca gaagaacaat
     4321 ttaatgtatt ttacagatat cataaaattt tctctggaat tttaattgat gaaaacaata
     4381 tatcatacaa taaaaccatt agttattatg ttagaaaact tgacatatct tctgagccca
     4441 atttaattaa cattatcaat attgttaata atactaaaaa ttttaaaaaa aacaattttg
     4501 caggagatca tataaatatt tacaacgcta aagaatatat agaaatttta tggaaaaaat
     4561 tagatataaa ccaaacaatt ctaatagaaa attatgatac aatatattaa ttttcaacat
     4621 tctcaagaaa gtggtataca atggaaaaac aattttatga aattttagaa aatatacttg
     4681 aaaccaaagt agatgaaaat acaaatttaa gcatggaaaa ctgcaagaac tggacttctt
     4741 tagctcatat tgatatcatc atgagtttag aag
//
LOCUS       DARAII010000126         4713 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.128, whole genome shotgun sequence.
ACCESSION   DARAII010000126 DARAII010000000
VERSION     DARAII010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4713
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.128"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..345
                     /locus_tag="SB143_001731"
     CDS             <1..345
                     /locus_tag="SB143_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001040341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase"
                     /protein_id="HEF9750235.1"
                     /translation="PLVRGQETDLIEIPANWYLDDLPPMMFIKKSPNSFGFVSPRDIG
                     QMWIDQFDWVYREMDYAIFPMTIHPDVSARPQVLLMHERIIEHINKHEGVKWVNLNDM
                     ADDFSKRFPRKK"
     gene            387..722
                     /locus_tag="SB143_001732"
     CDS             387..722
                     /locus_tag="SB143_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750236.1"
                     /translation="MCILCGEMISILHWSELNFKEEKHELSVGEEQKERLRIRLKKVK
                     ILNEILEFYGLKLKEWQNSKYILSNKKGRDIIVNDLGDLWIKASELEKKSFDVLDENL
                     LHFLRAKHG"
     gene            715..1659
                     /locus_tag="SB143_001733"
     CDS             715..1659
                     /locus_tag="SB143_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEF9750237.1"
                     /translation="MAKIPVHVVTGFLGSGKTTFLKEILTNQALNDIALVINELGEVS
                     LDHKLVQTDFIEEQTLFLNAGCACCNKREDLQKKFKELLDNFENKGKKPQRVILETSG
                     LANPAPIIFTFQSDVFLANHFELANIITCIDAFEGLNHLQNEEACNQILSSDFLILTK
                     KDLNPHTQSLEEKINTLYPNIQIISKENFNFDMLSSHHKIQREIKNIEIKSHKDDISS
                     ITLIFDKAINWNIFSIWLSMLLHEHGSKILRVKGLINTEESYLTNINGVGHLIYHPTH
                     TKISSLNHPSQLVFIAKNLKLDKIKESLENFLRLEQLN"
     gene            complement(1656..2522)
                     /gene="ftsY"
                     /locus_tag="SB143_001734"
     CDS             complement(1656..2522)
                     /gene="ftsY"
                     /locus_tag="SB143_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEF9750238.1"
                     /translation="MFDFFKKGLAKTLESIVGVKGENKKITKDLLEEILLEADVAYEI
                     VEEIIYYLPPSDEVKKEDLKRVMGSYFLYENKEFLDEKPFVELILGVNGAGKTTSIAK
                     LANLYKSQGQKVILGACDTFRAGAIEQLRLWSEKVGVDIVLTQQGHDPSAVAFDTISK
                     ARAKGFDKVIIDTAGRLQNQKNLANELEKIIRISAKAMPHAPHRKILVLDGTQGNAGI
                     LQAKAFNELVQLDGVIITKLDGTAKGGALFSIARELELPILYIGVGEKMQDLIEFNAQ
                     NFLDTLLEGVFD"
     gene            complement(2522..3079)
                     /locus_tag="SB143_001735"
     CDS             complement(2522..3079)
                     /locus_tag="SB143_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEF9750239.1"
                     /translation="MKIKKVFTLAILLSFFVACSNDKEKDQSDMNASVQSSLSQSENL
                     RFNLNLIDGNSIFIKKDNENLNFADGDKATLFVFFTTWCSPCIAEIPHLNKLQEKYEE
                     QFNIVGVLLEDKSDEELRAFAQKNQILYKIANGENNYLLAKILGGVNGIPTMFLYDKN
                     SQLINQYLGLIPEEMLEIDIQKAVL"
     gene            3160..3786
                     /locus_tag="SB143_001736"
     CDS             3160..3786
                     /locus_tag="SB143_001736"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEF9750240.1"
                     /translation="MQKTSFRTLQKNRLAQHKKLKFKQDFIVFKECFNLIKKTKAKNI
                     LIFIPLGYEPNLLKFRHIFSKNHKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPMDSF
                     LKTKIDIAIIPVIGVDRELKRIGHGQGFYDRFFENLNYKPLVIFAQSINAISEKKLTQ
                     EHDIAGEFYINPYKKYYKKDNKYDRITYRTYNRYSRSWNRIFSCKKNQ"
     gene            3707..>4713
                     /locus_tag="SB143_001737"
     CDS             3707..>4713
                     /locus_tag="SB143_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3552 domain-containing protein"
                     /protein_id="HEF9750241.1"
                     /translation="MIESLIALITAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEDKTHKIQKEFNQKFDELSKKEQKLQLQEESL
                     KENQEELLRSKKQMLDLQSDADKLKKQYQTKLNDVLNILEHSAGLTQDEAKNIILEKV
                     EENSRNEIAHIVRRYEEEARNEAKRKANYIIAQATSRFAGEFAAERLINVVNIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDNAILEEGETILMDLGLSKVHPEITKLIGKLKYRASYGQNAL
                     A"
BASE COUNT         1769 a          763 c          710 g         1471 t
ORIGIN      
        1 cctttggtgc gcggacaaga aacagatttg attgaaattc ctgcaaattg gtatttagac
       61 gatcttcctc ctatgatgtt tataaaaaaa tctccaaata gctttggttt tgtctctcca
      121 agagatatag gtcaaatgtg gatagatcag tttgattggg tttatagaga aatggattat
      181 gctatttttc ctatgactat acatcctgat gtaagcgcta gacctcaagt tttactcatg
      241 catgaaagaa ttattgaaca tatcaataaa cacgaaggtg taaaatgggt aaatttaaac
      301 gatatggcgg atgatttttc aaaacgcttt ccaagaaaaa aataaatttg caaggctttt
      361 agccttgtga attcaaaagg ataaaaatgt gtattttatg tggcgaaatg ataagcattt
      421 tacattggag tgaattaaat tttaaagaag aaaaacacga acttagcgta ggtgaagaac
      481 aaaaagaaag attaaggata agacttaaaa aagtcaaaat tttaaatgaa attttagaat
      541 tttatggatt aaaacttaaa gaatggcaaa attcaaaata catactaagc aataaaaaag
      601 ggcgtgatat tatcgttaat gatttaggcg atttgtggat taaggctagc gagcttgaaa
      661 aaaaatcatt tgatgtatta gatgaaaatc tacttcattt tttaagagct aagcatggct
      721 aaaattcccg ttcatgttgt taccggtttt ttaggaagtg gaaaaacaac ctttttaaaa
      781 gaaatattaa ccaatcaagc tcttaacgat atcgctcttg taatcaacga actaggggaa
      841 gtttctttag atcataaact cgtacaaaca gattttatcg aggagcaaac tttattttta
      901 aatgcaggtt gtgcttgctg caataaaaga gaagatttgc aaaagaaatt taaagaattg
      961 cttgacaatt ttgaaaacaa aggtaaaaaa cctcaaagag tcatactaga aacctcaggc
     1021 ttagcaaatc ctgcacctat tatctttact tttcaaagtg atgtgttttt agccaaccat
     1081 tttgaattag ccaatattat cacttgtatt gacgcttttg aagggcttaa tcacttacaa
     1141 aatgaagaag cttgcaatca aatattaagc tctgattttt taatactcac aaaaaaagat
     1201 cttaatcccc atacccaaag cttagaagaa aagataaaca ctttatatcc taatatacaa
     1261 atcataagca aagaaaattt taatttcgat atgctttcta gccatcataa aattcaaaga
     1321 gaaattaaaa atatagaaat aaaaagccat aaagatgaca taagttctat aactcttatt
     1381 tttgacaagg ctataaattg gaatattttt agcatttggc ttagcatgct tttacatgaa
     1441 cacggatcaa aaattctaag agtaaaagga cttatcaata cagaggaatc ttatctaacc
     1501 aacattaatg gagtaggaca tctgatttat catcctacgc atactaaaat ttcaagcctt
     1561 aatcatcctt cgcaattggt atttatagcg aaaaatttaa agctagataa gattaaggaa
     1621 tctttagaaa attttttaag gcttgaacaa ttaaattaat caaaaacacc ctctaaaagt
     1681 gtgtctaaga aattttgtgc attaaattct atcaaatctt gcattttttc acccacccct
     1741 atatacaaaa taggaagttc taattcacgc gctatactaa aaagcgctcc accctttgct
     1801 gtgccatcaa gtttagtaat aataactcca tcaagctgaa caagttcatt aaaagcttta
     1861 gcttgtaaaa tgccggcatt gccttgagta ccatcaagta ctaaaatttt tctatgcggg
     1921 gcatgaggca tagctttagc cgaaattcta atgattttct ctagctcatt ggctaaattt
     1981 ttttgatttt gcaaacgacc cgctgtatcg atgataacct tatcaaaacc cttagctcta
     2041 gccttgctaa tagtatcaaa agcaaccgcc gaaggatcat gaccttgttg ggttaaaact
     2101 atatctaccc ctactttttc agaccaaagt cttagctgct ctatcgcccc tgccctaaaa
     2161 gtatcacaag cgcctaaaat cactttttga ccttggcttt tgtataaatt agcaagctta
     2221 gctatactcg tggttttacc cgcgccattt acccctaaaa taagctccac aaaaggcttt
     2281 tcatctaaga attctttatt ttcgtaaaga aaataagaac ccatcacacg ctttaaatct
     2341 tcttttttaa cctcatcact gggtggtaaa taataaatga tttcttctac gatctcatac
     2401 gccacatctg cttcaagtaa aatttcctct agtaaatctt tggtaatttt tttattttca
     2461 cctttaacac ccactatact ttcaagggtt tttgcaagtc cttttttaaa aaaatcaaac
     2521 attaaagtac cgccttttgt atatcaattt ctaacatttc ttctggaatc aatcctaagt
     2581 attgatttat aagctgagag tttttatcat ataaaaacat agtaggaatt ccattaactc
     2641 cgcctaaaat tttagctaaa agataattat tttcaccatt ggctatttta tataaaatct
     2701 gatttttttg agcaaaagct ctaagctcct catcactctt atcttcaagt aaaacaccca
     2761 ctatattaaa ctgctcttca tatttttctt gaagcttatt aagatgcgga atctctgcaa
     2821 tacaagggga acaccaagta gtaaaaaaca caaacaaagt tgctttatct ccatcagcaa
     2881 aatttaaatt ttcattatct ttttttataa aaattgaatt tccgtctatt aaattgagat
     2941 taaatctcaa gttctcactt tgacttaagc ttgattgaac gcttgcattc atatcacttt
     3001 gatctttttc tttatcattg ctacaagcaa caaaaaaact caagagtata gctagtgtaa
     3061 atactttttt aattttcatt ctattatttt ccttgtatct ttgtaaaaaa tgttaaaatt
     3121 atatcatagt taagataata atttttaaaa aggcacacga tgcaaaaaac atcttttagg
     3181 actttgcaaa aaaaccgtct cgcgcaacac aaaaaactta aattcaagca agatttcata
     3241 gtgtttaagg aatgttttaa cttgattaaa aaaacaaaag cgaaaaatat tctaattttc
     3301 attcctttag gatatgagcc aaatttactc aaatttagac atatttttag taaaaatcat
     3361 aaactttttg tcccatttat gcaagataaa agtttaaaaa ttgtaaaatt aagattgcct
     3421 tttattaaaa aaaggtttgg ggtattagaa cccatggact cctttttgaa aactaaaatt
     3481 gatatagcta tcatacccgt gataggagta gatagagaat taaaaagaat aggacatggg
     3541 caaggttttt atgatagatt ttttgaaaat ttaaactata aacctcttgt aatttttgct
     3601 caaagtatca atgctataag tgaaaaaaaa ttaacccaag agcatgatat tgcgggtgaa
     3661 ttttatatca acccttataa aaaatactac aagaaagaca acaaatatga tagaatcact
     3721 tatcgcactt ataaccgcta tagtcggtct tggaatagga tatttagttg caaaaaaaat
     3781 caatgatgct aaatatgaaa tttttgttga gcaagcaaaa gcgaaagcaa aagctataga
     3841 atacgaagct gaactgattt taaaagatgc caaaaattca atccttaatg ccgaacttga
     3901 agtgaaaaaa aaatacgagg ataaaactca caaaattcaa aaagaattca atcaaaaatt
     3961 tgatgaatta tccaaaaaag agcaaaaact tcaacttcaa gaagaaagct taaaagaaaa
     4021 tcaagaagaa ttattacgct ctaaaaaaca aatgcttgat ttacaatcag atgctgacaa
     4081 gcttaaaaaa caataccaaa caaaactcaa tgatgtttta aatattttag aacattcagc
     4141 agggctcact caagatgaag caaaaaatat cattcttgaa aaagtagaag aaaactcacg
     4201 caatgaaatt gctcatatcg ttaggagata tgaagaagag gctagaaatg aggctaaaag
     4261 aaaggcaaat tacatcatag cacaagcaac ctctcgtttt gcaggagaat ttgctgctga
     4321 aagacttatt aatgttgtca acatcaaaaa cgatgagtta aaagggcgta tcataggcaa
     4381 agaaggacgc aatgttaaaa ccttagaaat ggttttagga gtagatatca tcatcgatga
     4441 tacacctgga gccatcatag taagttgctt taatctttat cgccgtgcta ttgcaactaa
     4501 ggtgattgaa cttttagtag aagatggaag aattcagcct gctcgcatag aagaaattca
     4561 cgaaaaagta tgcaaagaat ttgataatgc tattttagaa gaaggtgaaa ctatactgat
     4621 ggacttaggg ctttctaagg tccatccaga aatcaccaaa cttataggaa agcttaaata
     4681 ccgcgcaagc tatggacaaa atgctttagc aca
//
LOCUS       DARAII010000127         4708 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.129, whole genome shotgun sequence.
ACCESSION   DARAII010000127 DARAII010000000
VERSION     DARAII010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4708
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.129"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(125..1324)
                     /locus_tag="SB143_001738"
     CDS             complement(125..1324)
                     /locus_tag="SB143_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar MFS transporter"
                     /protein_id="HEF9750242.1"
                     /translation="MQMKSNNFALATLTALFFVMGFITVLNDILIPHLKAIFELNYFE
                     AALVQFCFFGAYFITGGFFGKLLEKVGYPVGVVLGFVLTSIGCILFYPAASTASYPIF
                     LGALFVLASGVVLLQTAGNPFVTLLAPGKEATALTLVQAFNSLGTTLGPIFGATFILS
                     GTAEYISKAQEAQSVQIPYLIIAGVLILLAVVVYLLRLPDVRERAEKISEENHDGKIS
                     IFEYPHLVLGAAGIFFYVGAEVSIGSFLILTMKKFADIEEITGAKYIAFYWGGAMVGR
                     FIGSAVMSIIPPNRCLAFNAMMSICLILLAVLVGGKVAMVSLIAIGFFNSIMFPTIFS
                     LATKNLGKFTSQASGLICMAIVGGALIPPVQGLVADYSNLLLSYMIPMLCYFYILFFA
                     LKGYKSR"
     gene            complement(1335..2978)
                     /gene="pgi"
                     /locus_tag="SB143_001739"
     CDS             complement(1335..2978)
                     /gene="pgi"
                     /locus_tag="SB143_001739"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEF9750243.1"
                     /translation="MKTLTHLNSYKALQNHFLDIKDVHMRTLFSEDLNRGFKYFLQSG
                     DLKLDYSKNRINDETLKLLFDLAKECSLKEKIDAMFEGEKINSTENRAVLHTALRNKS
                     DYAVKIDDMDIMPNVREVLAKMQKFSDSIRVGSWLGYTNQVITDIVNIGIGGSDLGAL
                     MVCKALKNYAHPRIHMHFVSNVDGIQLQGVLEKVHPETTLFIVASKTFSTQETLTNAF
                     TARRWFLNHALDEKYITKHFVAVSTNKEAVKEFGIDLENMFEFWNWVGGRYSLWSAIG
                     LAIMIYLGKENFSSLLEGAYLIDKHFRNEPFEKNMPVLMALIGIWYINFFDAGSHIIA
                     PYDSVLRYFPKFIQQLDMESNGKQITKSGKRVDYDTGPIIWGDVGINAQHAFFQLLHQ
                     GTHLSPIDLIASLVKRGNFPEHHEILLSNVFAQAEAFMLGRTLEEVQEEMTKKGLTKE
                     QIHKLAPHRVFSGNRPSNILLLDEIHPKSIGSLVALYEHKIFVQGVIWDINSFDQWGV
                     ELGKELAKTILSELKGETTQEHDSSTKNLIQIYRKLNSI"
     gene            complement(2982..3986)
                     /locus_tag="SB143_001740"
     CDS             complement(2982..3986)
                     /locus_tag="SB143_001740"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucokinase"
                     /protein_id="HEF9750244.1"
                     /translation="MSISQNKKSYPRLLADIGGTNARFALEVAANTIENIEVLVCNDY
                     NTVVDAVKVYLNKVGNPIVKYSAFAIANPVVGDWVQMTNHHWTFSIETTRQALNLEVL
                     ILINDFTAQAYAISQMSSTELIQVGGTSCEINAPKAVLGPGTGLGVSGLIPCSNGGYI
                     ALAGEGGHTSFSPFDDTEVMIWQYAKKKYGHVSAERFLSGSGLVLIYEALADREGIKS
                     SKIAPELISEQALSGRSPLCRLTLDIFCAMLGTISANLALTLGARGGVYLCGGIIPRF
                     IDYFKTSPFRMRFENKGRFNAYLAAIPVYVVLAKYPGIYGVAVALENHLKDYFLKNRG
                     "
     gene            complement(3967..4647)
                     /gene="pgl"
                     /locus_tag="SB143_001741"
     CDS             complement(3967..4647)
                     /gene="pgl"
                     /locus_tag="SB143_001741"
                     /EC_number="3.1.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphogluconolactonase"
                     /protein_id="HEF9750245.1"
                     /translation="MAFQLYRFENTQECELALAKAVASLLKKHLLHKNSINLAFSGGK
                     SPIGFLELLNQEDCAWDRCNISLVDERIVNLDDENSNTRLIATHFLKNLAKKSHFQAY
                     FENPNIPLDELVDKANAYYKQPDIAILGMGLDGHTASLFPEAEEFEWALKTKQNIVLI
                     SPKNAPYKRLSMSLSALEKCEELFLSIATEEKLEILNQALKVINPKFPISYILHSRKV
                     KCNVYFSK"
BASE COUNT         1663 a          928 c          634 g         1483 t
ORIGIN      
        1 cacctctaga aaaaatatgt ttggttatga tttttaagaa gtgaaagttg aaattatata
       61 taaaaaagct taaaaaaaga tgaaatataa aaactcaatg taaaatttta cattgagtta
      121 aaaattatcg acttttatat cctttaagtg cgaaaaatag aatataaaaa taacatagca
      181 taggaatcat ataagaaagt agcaagttag aataatcagc aaccaaacct tgaactggag
      241 gtataagagc tccaccaact atggccatac aaataagtcc tgaagcttga cttgtaaatt
      301 tgcctaaatt cttcgttgct aaagaaaaga tggttgggaa cataatggaa ttaaaaaacc
      361 ctatggctat taaagacacc atcgcaacct ttccgccaac caaaacggct aacaatatca
      421 aacaaatact catcatagca ttaaaagcca aacatcgatt cggtggtata atactcataa
      481 cagcacttcc tataaacctt cctaccatag caccgcccca ataaaacgct atatattttg
      541 cacctgttat ctcttctata tcagcaaatt ttttcatagt taaaattaaa aatgaaccga
      601 tagatacttc agccccaaca tagaaaaata tacccgcagc acctaaaaca agatggggat
      661 actcgaatat acttattttt ccatcgtgat tttcttcgct aattttttca gccctttctc
      721 ttacatcagg aagccttaaa agatacacca caacagctaa aaggattaaa acacctgcta
      781 ttattaagta aggaatttgg accgattgtg cttcttgagc cttacttatg tattcagccg
      841 ttccagaaag tataaaagta gcaccgaaaa tgggtcctaa agttgttcct agtgaattaa
      901 aagcttgaac caaagttaaa gctgtagctt cttttcccgg tgcaagcaag gttacaaaag
      961 gatttcctgc agtttgcaaa agaactactc cactagctaa aacaaaaaga gcccctaaaa
     1021 atataggata agaagctgta gaagctgctg gataaaataa aatacaacct atagatgtta
     1081 gaacaaatcc taaaacaacc cccacaggat atccaacttt ttccaaaagt tttccaaaaa
     1141 aaccacctgt tataaaataa gcaccaaaaa aacaaaattg caccaaagcc gcttcaaaat
     1201 aattcagctc aaaaatagct ttaagatgcg gtattaaaat atcatttaaa acggtgataa
     1261 atcccataac aaaaaataaa gctgtcaatg tcgctagtgc gaaattattt gatttcattt
     1321 gcatattttc tcctttaaat tgaatttaat tttctataaa tttgtattaa attttttgta
     1381 gaactatcat gttcttgagt tgtttctcct tttaattccg ataaaatagt tttagcaagt
     1441 tcttttccaa gctctacgcc ccattggtca aaactattaa tatcccaaat aaccccttga
     1501 acaaaaattt tatgttcgta taaagctacc aaagaaccaa tactttttgg atgaatttca
     1561 tcaagcaaaa ggatgttgct aggcctattc cctgaaaaaa ccctatgtgg agctaattta
     1621 tgaatttgtt cttttgttaa accttttttt gtcatttctt cttgcacttc ttcgagtgtt
     1681 ctacccaaca taaaagcttc tgcttgagca aaaacattac tcagtaaaat ttcatgatgc
     1741 tcaggaaaat tccctctttt taccaaagat gcaatcaaat caatagggct taaatgtgtc
     1801 ccttgatgta aaagttgaaa aaaggcatgt tgagcattta tacctacatc tccccaaata
     1861 ataggacccg tgtcataatc cactcttttg ccgctttttg ttatttgctt accattgctt
     1921 tccatatcaa gttgttgtat aaatttagga aaatacctta acaccgaatc atatggagct
     1981 ataatatggc tacctgcatc aaaaaaatta atgtaccaaa ttcctattaa agccataagc
     2041 acgggcatat ttttttcaaa aggctcgttg cgaaagtgtt tatcaattaa ataagctcct
     2101 tcaagcaaag aagaaaaatt ttccttacct aaataaatca taatagccaa gcctatagca
     2161 gaccaaagac tataacgccc acctacccaa ttccaaaatt caaacatatt ttcaaggtct
     2221 ataccaaatt cttttactgc ttccttattt gtagaaactg ccacaaaatg ttttgttatg
     2281 tatttttcat ctaaggcgtg atttaaaaac catcttctgg ctgtaaaagc attagttaaa
     2341 gtctcttgcg tagaaaaagt tttggaggct actataaata acgtcgtctc aggatggact
     2401 ttttctaaaa ctccttgcaa ctggatacca tctacattag aaacaaaatg catatgaatc
     2461 cttggatggg catagttctt tagtgcttta cacaccatta aagccccaag atcagaaccc
     2521 cctatgccta tatttacaat atctgtaata acttgatttg tataaccaag ccaagaaccc
     2581 actcttatag aatctgaaaa tttctgcatt ttggctaaaa cttctctcac attaggcata
     2641 atatccatat catcaatctt aaccgcatag tctgatttgt ttctcaaagc cgtatgcaaa
     2701 acagccctgt tttctgtgct attaatcttt tcaccttcaa acatagcatc aattttttct
     2761 ttcaaagaac attctttggc taagtcaaat aaaagcttta aagtctcatc attgatacga
     2821 tttttagaat aatcaagttt taaatctcca ctttgcaaaa aatatttaaa tcccctattt
     2881 aaatcttcac taaataaagt tctcatatgc acatctttaa tatctaaaaa atgattttgt
     2941 aatgctttgt aagaatttaa atgtgttaaa gttttcattt attaacccct attttttaaa
     3001 aaataatcct tcaaatgatt ttctaatgcc acagcaacac cataaattcc gggatatttc
     3061 gccaaaacaa catatacagg aatagctgct aaatacgcat taaaccttcc tttattttca
     3121 aaacgcattc taaaaggaga ggttttaaaa taatcaataa atctaggaat aattccacca
     3181 caaagataaa ctccgcctct agctcctaaa gtcaaagcta aattcgcaga aatagtcccc
     3241 aacatagcac aaaaaatatc caatgttaaa cgacataaag gagacctacc acttaaagct
     3301 tgctcgctaa taagttcagg tgctattttt gaactcttaa tcccttccct atctgctaag
     3361 gcttcataaa tcaaaacaag cccagaaccg ctcaaaaaac gctctgctga tacatgcccg
     3421 tattttttct ttgcgtattg ccaaatcata acttcagtat catcaaaagg cgaaaaacta
     3481 gtatgcccac cctctcctgc taaagcaata taaccgccat tgctgcaagg tatcagtcca
     3541 ctcacaccca gtccagttcc gggtcctaaa acagccttgg gagcatttat ttcacaagaa
     3601 gttccaccta cttgaataag ctctgttgaa gacatttgtg aaattgcata ggcttgtgct
     3661 gtaaaatcat taatcaaaat caacacttcc aaatttaaag cctgtcttgt agtttctata
     3721 gaaaaagtcc agtgatgatt tgtcatctgc acccaatccc ctaccacagg gtttgcaata
     3781 gcaaaagcac tatatttaac tataggattg ccaaccttat ttaaatacac tttaaccgca
     3841 tctacaacgg tgttataatc attacaaact aaaacttcta tattttcaat agtatttgct
     3901 gccacttcta atgcaaaacg agcgtttgtt ccaccaatat ctgctaaaag tcttggataa
     3961 gatttcttat tttgagaaat agacattaca ttttaccttt cttgaatgaa gtatataaga
     4021 gatgggaaat tttggattta tcactttaag agcttgatta agaatctcta acttttcttc
     4081 tgtagctatg gataaaaaca attcttcaca tttttcaagc gcggataaag acatagatag
     4141 tcttttgtaa ggtgcgtttt tagggctaat caagacaata ttttgtttgg tttttaaagc
     4201 ccactcgaac tcttcagctt caggaaaaag cgaagctgta tgtccatcaa gtcccatacc
     4261 taaaatagca atatcaggct gtttgtaata agcatttgct ttatcaacaa gttcatctaa
     4321 agggatatta ggattttcaa aataagcttg aaaatgggat tttttcgcca aattctttaa
     4381 aaaatgagtc gcaattaatc tagtattact attttcatca tctaaattca caattctttc
     4441 atcaaccaaa gaaatattac atctatccca agcacaatct tcttgattta acaattctaa
     4501 aaaacctata ggggatttcc ctcctgaaaa agctaaatta atgctatttt tatgcagtag
     4561 atgtttttta agcaatgaag caaccgcctt agctaatgca agttcgcatt cttgcgtatt
     4621 ttcaaaacga tataattgaa atgccattga tacacctttt attcttttaa gatataaaaa
     4681 gcttaacaaa gctttactta ataaattt
//
LOCUS       DARAII010000128         4647 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.130, whole genome shotgun sequence.
ACCESSION   DARAII010000128 DARAII010000000
VERSION     DARAII010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4647
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.130"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(16..1257)
                     /locus_tag="SB143_001742"
     CDS             complement(16..1257)
                     /locus_tag="SB143_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEF9750246.1"
                     /translation="MIVSKTYEIDSCDDVELDIKRESKLEFKLWYDDEKTPEALVFVV
                     QGMGDDISSIQYVGDYMVRQFNTAVVGVNYHCIGNRPQTGSTFYLDDIDKLILKVSCE
                     AADIKLPYDVDKIQDYKQMSEIFHFVNNQIIEGKQKGNFTPNYFLNLHVSLQPAKNEY
                     QNFGIMQAQDLLNVTLYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLVDG
                     VLDNSAYAKFLWKVVGFGKEIDFMQYSEFSTFDFFHHIKTHCSTKTFWTSNSSSPCFF
                     SPARRKIRNLLEEDHLLEQSKYLKTCFISYHSLYDEYVSLKEKTMLYEELEKLGFDAT
                     LCSITKESQVDGKFIKNLNHGMGIPVKLLIKKELPLMLEKIKQNLKKDYKEKCISYPC
                     EDLLYQFSEKDDKILLKIDKI"
     gene            complement(1257..1772)
                     /locus_tag="SB143_001743"
     CDS             complement(1257..1772)
                     /locus_tag="SB143_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEF9750247.1"
                     /translation="MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSNFNGIKEVNFRVGDEKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(1776..2783)
                     /gene="tsaD"
                     /locus_tag="SB143_001744"
     CDS             complement(1776..2783)
                     /gene="tsaD"
                     /locus_tag="SB143_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEF9750248.1"
                     /translation="MKNLILAIESSCDDSSIAVIDKDTLECKFHKKISQEMEHNVYGG
                     VVPELAARLHSEALPKILEQCKGYFDKLCAIAVTNEPGLSVSLLSGISMAKTLALSLN
                     LPLMAINHLKGHIYSLFLEESICLDMGILLVSGGHTKVLYLKEDGKIEILARTNDDSF
                     GESFDKVAKMMNLGYPGGVLIENLAQKAKSKNIHFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLDEDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAGVDTYKRKEFVELEEEILSPKNKNFLR
                     M"
     gene            complement(2780..4174)
                     /locus_tag="SB143_001745"
     CDS             complement(2780..4174)
                     /locus_tag="SB143_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEF9750249.1"
                     /translation="MKFFISIIFFISGLFALDLEFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGKNGDLNRKFASISPKDPD
                     YQTVKRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTNEINASK
                     YPDLESIATQTVNSVNASLVDPKHAYHLKNTKTQELGDAEMLKALTYFVISNRKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFTRTFELTPQGVDKAINQELEVKLFDDK
                     ILLSLKNPRKAINYVPFPINKELNYNTSNELTAVIAENNSFYIQYGNRFQTRLYPEYL
                     EFSNPFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESNILV
                     SKKNMQKPYSLDMAGKIYRVEFYELRGANLQQFLENSVESKLIKNAKMLDLATLRTAR
                     AKDKFIGSILVEFE"
     gene            complement(4171..>4647)
                     /locus_tag="SB143_001746"
     CDS             complement(4171..>4647)
                     /locus_tag="SB143_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEF9750250.1"
                     /translation="IIEAYHLYNFKNIDALIEPKSLVHAMCEFKNGASTAYFSRADMK
                     LSISEAIFSKHDSKILEPVDFVKLSGLKFYKISTKKYPIFKLKDELLNNPDLGVIINA
                     ANEIGVQNFLDHKIQFLDIAHIVFKALDHFGVPKISSIDEVFEYDYKTREYLRGMK"
BASE COUNT         1543 a          855 c          612 g         1637 t
ORIGIN      
        1 gctcattagg tttccttaaa ttttatctat ctttaacaat attttgtcat ctttttcgct
       61 aaattgatac aacaaatcct cacaaggata agagatacat ttttctttat aatctttttt
      121 tagattttgt tttatttttt ctaacattaa aggaagttct tttttaatca aaagttttac
      181 tggaattccc atgccatgat ttaagttttt aataaatttt ccatcaactt gagattcttt
      241 agtaatagaa cacaaagttg catcaaagcc aagtttctca agctcttcat aaagcatagt
      301 tttttctttt aaagaaacat actcatcata taacgaatga taacttataa agcaagtttt
      361 taaatatttt gattgttcta aaagatgatc ttcctctaaa agatttcgaa tttttcttct
      421 tgcgggagaa aaaaaacaag gcgatgaaga attacttgtc caaaaagttt ttgtcgaaca
      481 atgtgtttta atatgatgaa aaaaatcaaa agtagaaaat tcactatact gcataaaatc
      541 tatttccttt ccaaagccta caactttcca taaaaactta gcgtatgcag aattatccaa
      601 cactccatct actaaccaag gtgcaatctt agccgccaaa tgtgctaaat atcccccgtg
      661 agaactacct atcataataa ctggtatacc cccccccata gtatcaaaag gagcatgttt
      721 tttaaggtaa agtgtgacat ttaaaagatc ttgagcttgc ataatcccaa aattttgata
      781 ttcgtttttt gcaggttgta aactcacatg taaatttaaa aaataatttg gtgtaaaatt
      841 acctttttgc ttgccttcaa ttatttgatt atttacaaaa tgaaaaatct cactcatttg
      901 tttatagtct tgaattttat caacatcata aggaagcttg atatccgcag cttcacaact
      961 tacttttaaa ataagcttgt ctatatcatc taaataaaaa gttgatccag tttgaggacg
     1021 attaccaata caatgataat ttactccaac tacagcagta ttaaattgcc ttaccatata
     1081 atcaccaaca tattggatcg atgatatatc atcgcccata ccttgcacca caaacaccaa
     1141 ggcttcaggt gttttttcat catcatacca aagcttaaat tcaagctttg attctctttt
     1201 tatatcaagt tctacatcat cacaagagtc aatctcataa gttttactca ctatcattac
     1261 attcccccta ttaaaagata agttttactc gctaggtttt taaaattttc attcttactt
     1321 aaaatcacac aagctttatt actagaagag cttgtaaagt ctatattttc taaatcttca
     1381 tggctttgat tggctgcgtt aatgatagca tttttacttg cttcattgct tgaaattccc
     1441 atgagtataa aatcagcttt atttataaaa acaagtttta agcattcttt ctcatcgcct
     1501 acgcgaaaat ttacttcttt tataccgtta aaattactaa gatcaacatt ttcaaccccg
     1561 cttacattac tcatcgtttt tatagagctt aaatgatcat tttttaaagt ataaatgctt
     1621 atatcattga ttaaagtttt aagattgttt aaggatttac tcacttcagc ttcatctcta
     1681 ctagaactga attttggcaa agcaatcgct gctaaaattc ctaaaatcac gatcacaaaa
     1741 acaagttcta atatagtaaa agctcttttc actttttaca tccttaaaaa atttttattt
     1801 tttgggctta agatctcctc ttcaagctcc acaaattctt ttcttttata agtatcaacc
     1861 ccagctcttg ctatcatcaa agcattatca gagcagaatt ttaaaggagc tagttttaaa
     1921 tttgcattat atttttgaca taaattttgc aaacgcgaac gcaagttaag atttgcacta
     1981 gctccaccta caacgccaaa atttttaaat ttataaagat taaaaatctt ttctaattta
     2041 tccatgatat gatcacaagc tgtattttca aaagcataag ctatttctgc ttttatatct
     2101 tcatctaaat tttcatgctt taaaatttct aaacgcaccg catttttaag ccctgaaaaa
     2161 ctataagcaa gctctttaga gtgttttaaa gggatgttaa aatggatatt ttttgattta
     2221 gctttttggg ctaaattttc tataagcact ccaccaggat agcccaaatt catcatctta
     2281 gctaccttat caaagctttc gccaaagcta tcatcattgg tccttgctaa aatttctatt
     2341 tttccatctt ccttaagata aagaacctta gtatgcccac cacttacgag caaaattccc
     2401 atatcaaggc aaatagactc ctctaaaaaa agactataaa tatgaccttt aagatgattg
     2461 atagccatta agggcaaatt taggctaagt gctaaagtct ttgccatgct tatgccacta
     2521 agcaaagaaa cactaagtcc aggttcattt gtcacagcta tggcacataa cttatcaaaa
     2581 taccccttgc attgctcaag tatctttggc aaagcctcgc tatgaagtct tgctgcaagc
     2641 tcaggtacca ctccgccata aacattgtgc tccatttctt gagagatttt tttatgaaat
     2701 ttacactcta aagtatcttt atcaatcact gctatagagc tatcatcaca agaactttct
     2761 atagctaaaa taagattttt cattcaaatt ccactaaaat agaaccgata aatttatctt
     2821 tagctcttgc agttcttagc gtagcaagat caagcatttt agcatttttg ataagcttgc
     2881 tttcgacact attttctaag aattgctgca aattagcccc tcttaactca taaaattcta
     2941 cgcgataaat ttttcctgcc atatctaaag aataaggctt ttgcatattt tttttagaaa
     3001 ctaaaatatt gctttcatcc ttgctatgat caaaacctat gatatttacg cgcacattag
     3061 ctatctttgg aataagaaaa ttctctttta cttttacctt ggttccaaaa ggaactgtgg
     3121 tttcattgcc atcaacttga aaagttactt cattaaaagg gttgctaaat tcaagatatt
     3181 caggatagag ccttgtttga aatcggttgc cgtattggat ataaaaagaa ttattttcag
     3241 ctataaccgc ggtaagctcg ttgctagtgt tataatttaa ttctttattg ataggaaaag
     3301 gcacataatt gatagctttt cttggatttt ttaaagaaag taaaatttta tcatcaaaaa
     3361 gcttgacttc gagctcttga ttgatggctt tatcaacacc ttgtggggta agttcaaaag
     3421 ttctagtaaa ttcaattcct gctgttttga gatagttttc aatagccaaa agatgataat
     3481 aagcccttaa atttacaggc aaatttttac tcgcctcgtt ggcaaaagcg gctttgcgat
     3541 tggatataac aaaatatgtt aaagctttta gcatttcagc atcaccaagc tcttgagttt
     3601 tagtattttt aagatgataa gcatgttttg gatcaaccaa ggaagcattg acactattta
     3661 cagtttgagt ggctatgctt tcaagatcag gatatttact agcattgatt tcatttgtat
     3721 caatcacact tgaatttccc caacgcttag gattttgcat agcatctata taagtaggtt
     3781 tgtaaaaacc ccaaccatcg tgaagattga tcaccatgct aacttcagga agtaaaataa
     3841 gctctttaat gcgtttaact gtttgataat caggatcttt tggacttatg cttgcaaatt
     3901 tgcgatttaa atctccattt ttcccgcgtg agcgtttaat aatgctatca aaagctaaat
     3961 taggagcaac tatgatttta cccttagtga tattataatc actcaaaagt aagcttgccg
     4021 catgaaatcc accaggctca tcgccttgaa ttcctccaaa aatcaaaacc gtattgttat
     4081 catctaagct ttttccattc tctcccacgc taaattctaa atctagagca aaaagtccgc
     4141 ttataaaaaa aataatcgat ataaaaaatt tcatttcatt ccccttaaat actctcttgt
     4201 tttataatca tactcaaaaa cctcatcaat acttgaaatt ttaggcacac caaaatgatc
     4261 caatgcttta aaaacaatat gagcgatatc taaaaattgt attttatgat ctaaaaaatt
     4321 ttgcactcca atttcgttag cagcattgat aatcacgcct aaatcaggat tgtttaaaag
     4381 ctcgtctttg agtttaaaaa taggatattt tttcgtgctg attttataaa attttaaacc
     4441 agaaagttta acaaaatcaa ccggctctaa aattttacta tcatgcttag aaaaaatagc
     4501 ctctgatata gatagtttca tatcagccct tgaaaaatac gccgtacttg caccattttt
     4561 aaactcacac atggcatgga ctaaagattt tggttcgatg agagcatcga tatttttaaa
     4621 attatacaaa tgataagctt cgatgat
//
LOCUS       DARAII010000129         4609 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.131, whole genome shotgun sequence.
ACCESSION   DARAII010000129 DARAII010000000
VERSION     DARAII010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4609
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.131"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..892
                     /gene="hypE"
                     /locus_tag="SB143_001747"
     CDS             <1..892
                     /gene="hypE"
                     /locus_tag="SB143_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEF9750251.1"
                     /translation="KILNESNDAAILGNLALSTDSFVLSPIFLDDEVNIGKLCVCGSV
                     NDVLMVGAKPKYLSLGLILEEGFELEKLERILKSIKEECEKCGVMLVCGDTKVVPKGK
                     ADEIYINTTALGEIIAKKESKNIKAGLSILLSGDIGRHGASVLIKRNELEADVKSDCK
                     ALDKEVLELLEKDIKVVAMRDATRGGLSAVLNEWAKQSGNDLLIFEEKIKIQDEVLGL
                     CELFGYEAFELANEGTFILCVEKEDELKALEILKKYNVNASIIGEVLEEKKARVILEN
                     AYGAKRFLEAPKGELLPRIC"
     gene            892..1236
                     /gene="hypA"
                     /locus_tag="SB143_001748"
     CDS             892..1236
                     /gene="hypA"
                     /locus_tag="SB143_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEF9750252.1"
                     /translation="MHELSIVESLIELCEENAFAHKAKSVQEIYVKIGRLSGIEVELF
                     RRCFETFRENSELCKNAKLFIELAPLEILCLKCDQTSVLEENVFKCPKCESIEYKISQ
                     GEDLHLMRLVME"
     gene            complement(1344..2309)
                     /locus_tag="SB143_001749"
     CDS             complement(1344..2309)
                     /locus_tag="SB143_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEF9750253.1"
                     /translation="MYRKELQNLLSKNQIDNFFFLYGADNFQSELYADFIKEKYQADE
                     ILKLFFEEYSFTRASDFLSGGSLFSEKKLLEIKTSKKIPTKELKVLVELCKNNKDNFL
                     LLELYDESSKQSDIEKIFSPNFVRFFKANNAREGIELLSIKAKQLHIEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNIGSFESFFEKILKRADFKNELEK
                     ILDNFNEIALINSLSSAFYRLFKIALYAKIYGKVDFKELLGYTPPPQVAQNLNEQAFS
                     LKIKHYKEIFNLLLKSEYELKTNSKLAKKEFLIATLLKLARIIKS"
     gene            complement(2302..4236)
                     /locus_tag="SB143_001750"
     CDS             complement(2302..4236)
                     /locus_tag="SB143_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEF9750254.1"
                     /translation="MKEFLNNLNYGISAHEVSNEFKQILRELLANNIIKEHKNRYYLN
                     NGYVFGTLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAAKLLPLKKKRPS
                     AKVVLVLKRANETSLVITKRYGEAVLGMNIKTGLSTTLKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVHAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDVGVFRNHSSADMKKIDRLLNELLELGIDV
                     KLKPNLPELIRDIQALADELGLRAEVDKLIIKAQKKAEYSSENGGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKVKQKKDEKLFNYLLLNIQSTCENLSVLEREADKVAYDFMDRK
                     FARWAAKNIGKKFKALVVQNDGICIAKLDDEIKGADIILYDTRVNLLESVEVQILEAD
                     IIMAKIYAKITQRLRKESNV"
     gene            4359..>4609
                     /locus_tag="SB143_001751"
     CDS             4359..>4609
                     /locus_tag="SB143_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEF9750255.1"
                     /translation="MAVTVYYDKDCDLSLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     VIGLREDGASFSKAKSAGFEVMSVSEASKVADVIMILAP"
BASE COUNT         1488 a          669 c          817 g         1635 t
ORIGIN      
        1 taaaatttta aatgaaagca atgatgcggc gattttggga aatttggctt taagcacaga
       61 ttcttttgtc ttaagtccta tctttttaga tgatgaggta aatataggta agctttgcgt
      121 ttgcggttct gttaatgatg ttttaatggt aggggcaaaa ccaaagtacc ttagcctagg
      181 acttatttta gaagagggtt ttgagctaga aaaattagaa cgtattttaa aaagcattaa
      241 agaagaatgt gaaaaatgtg gagttatgtt agtttgtggc gatactaaag ttgttcctaa
      301 gggcaaagca gatgaaattt atatcaacac tactgcttta ggtgaaatca tcgctaaaaa
      361 agagagtaaa aatatcaaag cagggcttag catacttctt tcaggcgata taggaaggca
      421 tggagccagt gttttaatca aaagaaatga gttagaagct gatgttaaaa gtgattgtaa
      481 ggctttggat aaagaggttt tggagctttt ggaaaaggat ataaaagttg tagctatgcg
      541 tgatgctact cgtggagggc ttagtgcagt tttaaacgaa tgggcaaagc aaagcgggaa
      601 tgatcttttg atttttgaag aaaagataaa aatacaagat gaagttttag ggctttgtga
      661 actttttggc tatgaggctt ttgagcttgc aaatgaaggc acttttatac tttgtgttga
      721 aaaagaagat gagttaaagg ctttggaaat tttaaaaaaa tacaatgtaa atgctagtat
      781 cataggagaa gttttagaag agaaaaaagc tcgtgtgatt ttagaaaatg cttatggagc
      841 taaacgcttt ttagaagctc ctaagggcga acttttaccg agaatttgct aatgcacgag
      901 cttagtatag tagagtcttt aatcgaactt tgcgaagaaa atgcttttgc tcataaagct
      961 aaaagtgtgc aagagattta tgtaaaaata ggtcgtttaa gcggtataga agtagagctt
     1021 tttaggcgtt gttttgaaac ttttagggaa aattcagagc tttgcaaaaa tgcaaagctt
     1081 tttatagagc ttgcaccgct tgaaattttg tgtttaaaat gtgaccaaac aagtgtttta
     1141 gaagaaaatg tttttaagtg ccctaaatgc gaaagtatag agtataaaat ctcacaaggt
     1201 gaggatttgc acctcatgcg acttgtgatg gagtgagtca aaaaattgat tttttgcaaa
     1261 acgataatct cttaaataaa gaattttagg gaaattttac aagaaattta aagagcaaaa
     1321 taagaaatga gattgtcaat aatctaactt tttataatcc ttgcaagctt tagcaaagtg
     1381 gcgattagaa attctttttt agcaagtttg gaattggttt taagttcgta ttcactttta
     1441 agcaaaaggt taaaaatttc tttataatgt ttgattttta agctaaaagc ttgttcgttt
     1501 aaattttgtg ctacttgagg cggaggagta taacctaaga gttctttaaa atccactttc
     1561 ccataaattt tagcataaag agcaatttta aaaagacggt aaaaggcaga acttaaagag
     1621 ttaatcaaag caatttcatt aaaattatcc aaaatcttct caagctcatt tttaaaatcg
     1681 gctcttttta aaatcttttc aaagaagctt tcaaaacttc ctatgtttaa gctataacaa
     1741 tattgctcta tggttttttc atccactctt aagccgctga atttattaag ctcgctagca
     1801 gcaagataca aattctcatc aaagcttgta aaaagggtaa ataaagcatt ttgagtgatt
     1861 tctatatgga gttgttttgc ttttatgctt aaaagctcta tcccttctct tgcgttattg
     1921 gccttgaaaa aacgcacaaa attaggagaa aagatttttt ctatatcgct ttgtttagag
     1981 ctttcatcgt aaagttctaa aagtaagaaa ttgtctttat tatttttaca aagctcaact
     2041 aaaactttaa gttcttttgt gggaattttt ttagaagttt tgatttctaa aagctttttt
     2101 tcgctaaaaa gcgaacctcc gcttagaaaa tcacttgcac gagtaaagct gtattcttca
     2161 aaaaataatt ttaaaatttc atccgcttgg tatttttcct tgataaaatc agcataaagc
     2221 tcactttgaa aattatcagc tccataaaga aagaaaaaat tatcaatttg atttttggaa
     2281 agtaaatttt gaagttcttt tctatacatt actttccttt ctaagtcttt gggtgatttt
     2341 tgcataaatt tttgccatga tgatgtcagc ttctaaaatt tgcacttcta cgctttctag
     2401 taaatttacc cgcgtatcat aaaggatgat atcagctcct ttgatctcat catcaagttt
     2461 tgctatacaa attccatcat tttgcactac tagggcttta aattttttgc ctatattttt
     2521 agctgcccat ctcgcaaatt ttctatccat aaaatcataa gcgactttat cagcctctct
     2581 ttcaagcacg ctaaggtttt cgcaagtgct ttgtatattt aaaagtaggt aattaaaaag
     2641 tttttcatct tttttttgtt taacttttaa aagtctatgt aagataagat cagaatacct
     2701 gcgtatagga cttgtaaaat gtgagtattt gtcaaaacct aaaccaaaat gccccccgtt
     2761 ttcgctagaa tactctgcct ttttttgagc tttaatgatg agtttatcca cttccgctct
     2821 taagccaagc tcatcggcta aagcttgtat atcgcgtata agctcaggca ggttaggttt
     2881 tagttttaca tcgattccaa gctctaaaag ttcatttaaa agtctatcta tctttttcat
     2941 atctgcacta gagtgatttc taaaaacacc tacatcgatg agttttgctg cggctttatt
     3001 ggctaaaagc atacaatctt cgatcaaatt atgcgaaggc gtgtcttttt caaaaactgt
     3061 gctttttaga cttaagtttt catctagatt cattcttaat tcttcggtgc gaaattcaaa
     3121 ggcattttta agacgcattt tgcgtaaatt ttttgtgatt tcaaaaagct cataaagcca
     3181 tgaaagctct tttaaatcag gtttttgtat caaaatttca tcaacttcat cataattaaa
     3241 acggcgtttt gagttgataa taccttcaaa aagttcttct tttatgactt tattttcatg
     3301 atcgagtgtg attttaaaac aatacgctaa gcgatctaaa tgaggcttta aagaacagat
     3361 attttcactc aaaggacgag gtagcatagg tatagcaata tgtggaaaat aaatagaaaa
     3421 tccacgattt cttgcttctt tatctatagc gctataagca tgaacatatt cgctaacatc
     3481 agcaatagct acataaattt ctcgtttttg agtgtcaaaa taaatcgcat catcaaaatc
     3541 ttttgcatgt ataggatcta tggtgcaaaa aggcaaggct cttaaatcca tgcgattttc
     3601 atacatgctt gcatcaacgc tatcgccgtt tgctagagct tctttgatgc aagcgtcgct
     3661 aaattcgtta tttttattaa aaagagctaa ggagattttt tcatctacgc tttcatcatc
     3721 gatatgtcct aaaacttcta tgatattgtt attttcattt tctattttta aaattgtccc
     3781 taaaggtagt gcttttaagg atttttgaga agcttttaag gtggtgctta atcctgtttt
     3841 gatattcatt ccaagaactg cttcgccgta tcttttggtg ataacaagtg aggtttcatt
     3901 agctcttttt aaaaccaaaa ccactttagc actagggcgt tttttcttta aggggagtaa
     3961 tttagcagca acgatatctt tgtaatttgc tccttttaaa tttttatttt ctataagcaa
     4021 atctttttta aaactctcat caaaacactg taaaaatcct gtgcccttgc tcgaaatatc
     4081 aagggttcca aaaacatagc cattattaag atagtatcta tttttgtgtt ctttgatgat
     4141 gttattagct agaagctctc ttagaatttg tttaaattca ttgctaactt catgagcact
     4201 tatgccgtaa ttaagattgt ttaaaaattc tttcactgct ttactttatg taaattttct
     4261 tgagaattct tgcataaagt ttataaaaaa aatatgaaat ttaaaacttt attgttataa
     4321 taagctcttt aattttgaat ttattaagga gtaaaataat ggctgttaca gtttattatg
     4381 acaaagactg tgatttaagt ttgattaaat caaaaaaagt ggcaattata ggctttggat
     4441 ctcaaggaca tgcccatgct atgaatttaa gagacaatgg ggttaatgtt gtcatcgggc
     4501 ttcgtgaaga tggggcaagt ttttctaaag caaaaagtgc aggttttgaa gtgatgagcg
     4561 taagcgaagc ttcgaaagta gcagatgtga ttatgatttt agctccgga
//
LOCUS       DARAII010000130         4596 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.132, whole genome shotgun sequence.
ACCESSION   DARAII010000130 DARAII010000000
VERSION     DARAII010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4596)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4596)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4596
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.132"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..372)
                     /locus_tag="SB143_001752"
     CDS             complement(<1..372)
                     /locus_tag="SB143_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEF9750256.1"
                     /translation="MKSLLFLALILILGFKFYSIEFLATILVISFLIFFHELGHFLAA
                     KSLGVKVEIFSIGFGQSLFEREFKGTKYRLSALPLGGYVKLKGQDDMQPGLENQDQDS
                     YSILSPMKKIYILFAGPFFNLF"
     gene            complement(369..905)
                     /gene="pgsA"
                     /locus_tag="SB143_001753"
     CDS             complement(369..905)
                     /gene="pgsA"
                     /locus_tag="SB143_001753"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEF9750257.1"
                     /translation="MNIPNTLAVLRMILAPLLFFLLSYKFDNIHQSWINYFAALTFAL
                     AALSDFFDGFIARTLQQTTKLGGILDPLADKMLTLAAFLGLLLSGKANEWIVYLILVR
                     EFFITGFRVVMVSENLNVNASFTGKLKTTFQMIAIGFLTMEWIGGDILLYIALFLTLY
                     SGFEYIFSYVKQSKGKLQ"
     gene            complement(1056..1661)
                     /locus_tag="SB143_001754"
     CDS             complement(1056..1661)
                     /locus_tag="SB143_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEF9750258.1"
                     /translation="MKTELEIFSTRYSCRNFKNEKLKKEDLDTILEIARLSPSSLGLE
                     PWRFLVVQDDNKKEELAQICNQQQHVKDCGALIIIVSRLDFLDYFEDKLRKRDMSEAE
                     IQKRLDTYMPFLQSLGQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLLLDTKKEKSTLVIALGYSNDEKIPQKNRFEFDKIVQFL"
     gene            complement(1661..2281)
                     /locus_tag="SB143_001755"
     CDS             complement(1661..2281)
                     /locus_tag="SB143_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEF9750259.1"
                     /translation="MNFKELISKRRACKLFNDKKISEEDLHCILESGVLAPSSHGFEP
                     WKFIILDKKEDNQKLAKLCFDQASVASASHNIILLARKDLQSKDEFAQKQIRRFAGSK
                     EENFQRILKIYTHDTDAMNEKELYHFAQLQCYLAMMQMSLAAMSLGIDSCMIGGYEKD
                     KVDDFLKLEYPFETAVILSLGYQAHEPKYPTQRLKFDEVVEFYKEK"
     gene            complement(2346..2771)
                     /locus_tag="SB143_001756"
     CDS             complement(2346..2771)
                     /locus_tag="SB143_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEF9750260.1"
                     /translation="MREINLKEDLEKIYPLIKQLRNNLSLEDFLEKFQLAKKTQHYKL
                     FAYEDKGAFKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGVGQSFFKKIQIWAKKQ
                     GYEELELSSSFFRTQAHEFYIQKMDFEKSGFVFKKNIKL"
     gene            complement(2783..3871)
                     /locus_tag="SB143_001757"
     CDS             complement(2783..3871)
                     /locus_tag="SB143_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEF9750261.1"
                     /translation="MKHLLFLIGDELIMNENFKDYIYRSYENKFKEIHETRFQNKTDK
                     ELPFLLEKLLDKYDFITLFTTPNHYATIAKILATLSEDNLVLKEDNLVPDKAYFQKDS
                     FICDFINSKINVIKTNPGQKLPPLLGDIFPNFAYFCLLGIDDESAVLLLDTLTKSYEV
                     SIKSSKILENLTLIKASCVNFGKLDGFLTSVKNLFGQKVFLGKDPIQFIVSKLLEKKI
                     KISFAESCTGGLCASTLTKFSGVSEIFEGSIVSYSNKIKHEWLGISESILENQGEYSE
                     RCVYFMLKGIFKTAKPDFALAISGVTGEQDEGLVKSGTVYIGAMFKDGTFVQETLYLS
                     GDREFMQKQATLATFCLLLKLKPEIFEF"
     gene            3962..>4596
                     /locus_tag="SB143_001758"
     CDS             3962..>4596
                     /locus_tag="SB143_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEF9750262.1"
                     /translation="MDYKDTLLLPNTTFAMRANLAEFEPKRFEKWFSKNYAYEKMKTK
                     RKEAKKAFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFNGESIRFTPGWDCHGLP
                     IEQQVEIKLGDKKKSLSKKEIRSFCREHANEFVNIQRDEFKSLGVIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYEDKEDYSI"
BASE COUNT         1608 a          758 c          666 g         1564 t
ORIGIN      
        1 gaaaagatta aaaaaaggtc ctgcaaaaag aatataaatt tttttcatag ggcttaaaat
       61 actatagcta tcttgatcct gattttctaa accaggttgc atatcatctt gccccttaag
      121 cttaacataa ccgcctaatg gtaaagcact caagcggtat ttggtacctt taaattcacg
      181 ctcaaataag ctttgtccaa aacctatgct aaaaatttct actttaacac ctaaggattt
      241 tgctgctaaa aaatgaccta gttcgtgaaa gaaaatcaaa aaagaaataa ctaagatggt
      301 tgctaaaaat tctatagagt aaaatttaaa cccaagaatt aaaatcaaag ctaaaaaaag
      361 taaagatttc attgtaattt tcctttgctt tgcttaacat aactaaaaat atactcaaat
      421 cctgaataaa gcgtgagaaa taaagcaatg taaagcaaga tatctccacc tatccattcc
      481 atagttaaaa accctatggc tatcatttga aaagttgttt ttaattttcc agtaaaagaa
      541 gcattgacat ttaaattttc acttaccata accacgcgaa aacccgtgat aaaaaattcg
      601 cgcactaaga taagataaac aatccattca ttagcctttc ctgatagaag aaggcctaaa
      661 aaagctgcta gggttaacat tttatctgct agaggatcta aaattccacc aagctttgtg
      721 gtttgttgta aggttctagc tataaagccg tcaaaaaaat cactcaaggc tgccaaagca
      781 aaagttaaag cagcaaaata attaatccag ctttgatgta tattatcaaa tttataactc
      841 aataaaaaaa agagcaaggg tgctaaaatc atccttagca cagctaaagt attgggtatg
      901 ttcataaaaa accttatttt agattaagat aaaactatta gataaaattg tataagattt
      961 aggcaaagct ttagtaaaaa aatatttaaa tttatatttt tttgaaatat agtgtaaaaa
     1021 atataaacac cttgcctaaa agagcaaggt aaaaatcaaa gaaattgaac tatcttgtca
     1081 aattcaaagc gatttttttg tggaattttt tcatcattag aataccctaa agctatcacc
     1141 aaagtagatt tttctttttt agtatcaagc aaaagataag aatcgagttt ttctttatca
     1201 aaaccgccta tagtacaact tgctatattt aaagcattgg cactataaag tatactcgca
     1261 agtgctatat gagcttgttc tcttgcatag gatatttttt gttcttgacc aagggattgt
     1321 aaaaaaggca tataagtatc taagcgtttt tgaatttctg cttcactcat atctcttttt
     1381 ctaagcttat cttcaaaata atctaaaaaa tcaagccttg aaacaatgat aattaacgcc
     1441 ccgcaatctt ttacatgttg ttgttgattg caaatttgag ccagctcttc ttttttattg
     1501 tcatcttgca ccactaaaaa tctccaaggc tcaagcccta aagaactagg acttaatctt
     1561 gctatctcta aaatagtatc caaatcttct tttttaagtt tttcattttt aaaatttcta
     1621 caagaatatc ttgtgctaaa aatttcaagt tctgttttca tcacttctcc ttataaaatt
     1681 caaccacttc atcaaatttt aaacgttgag tagggtattt tggctcgtga gcttgatagc
     1741 ccaaagataa gatcacagcc gtttcaaaag gatactcaag tttaagaaaa tcatccacct
     1801 tatctttttc atagccccct atcatacaag aatcaatccc caaactcatc gcagctagcg
     1861 acatttgcat cattgcaaga tagcattgaa gttgtgcaaa atgataaagt tctttttcat
     1921 tcattgcatc agtatcgtga gtataaatct ttaaaattct ttgaaaattt tcttccttgg
     1981 agcctgcaaa acgacgaatc tgtttttgtg caaattcatc cttgctttgc aagtcttttc
     2041 ttgctaaaag aatgatatta tgactcgcac ttgctacgct tgcttgatca aaacaaagtt
     2101 tagcaagctt ttgattgtct tcttttttgt ctagtatgat aaatttccaa ggctcaaatc
     2161 catgtgagct tggggctaag actccacttt ctaagataca atgcaaatct tcttcactga
     2221 tttttttatc attaaaaagt ttacaagctc tgcgttttga aatcagttct ttgaaattca
     2281 tagtttaatc cttaattaaa aaataataat attaattata aaatgcaaag cttaatcaaa
     2341 aaatattata gtttgatatt tttcttaaaa acaaagccag atttttcaaa atccattttt
     2401 tggatataaa attcatgagc ttgtgttcta aaaaaacttg agcttaattc caattcttca
     2461 tatccttgtt tttttgccca aatttgaatt tttttaaaaa aagattgacc cacaccttta
     2521 cctcttaaag cttcatctac aacaaaatca caaatataaa gacaatgatt atgataaagt
     2581 acattaaagg gcataactcc acaagctgct ttgaaagctc ccttgtcttc atatgcaaaa
     2641 agtttataat gttgagtttt tttagcaagt tgaaattttt ctaaaaaatc ctctaaagac
     2701 agattatttc ttaattgttt tattaaggga taaatttttt ctaagtcttc ttttaaatta
     2761 atttctctca ctatcagtcc ctttaaaatt caaatatttc aggttttaat tttaaaagca
     2821 agcaaaaagt cgctaaagta gcttgttttt gcataaattc acggtcgcca cttaaataaa
     2881 gagtttcttg gacgaatgtt ccatctttaa acatcgctcc tatataaact gtgcctgatt
     2941 ttaccaaccc ttcatcttgc tctcctgtaa caccgctaat agctagtgca aaatcaggtt
     3001 ttgcggtctt aaagatacct ttaagcataa aatacacaca acgctcgctg tattcgcctt
     3061 gattttctaa aatgctttca ctaataccca accattcgtg tttgatttta ttagaatagc
     3121 ttacgataga accttcaaaa atttcactca ctccactaaa ttttgtaaga gtgcttgcgc
     3181 aaagtccgcc tgtgcagctt tctgcaaaag aaattttgat ctttttttct aaaagttttg
     3241 aaacgataaa ttgtatagga tctttgccta aaaatacttt ttgtccaaaa agatttttta
     3301 cactcgttaa aaaaccatct agcttgccaa aattaacaca acttgcttta ataagagtaa
     3361 gattttctaa tatcttgctt gattttatac tgacttcgta agatttggtt aaggtatcaa
     3421 gcagtaaaac agcactctca tcatctatgc ctaataaaca aaaataagca aaattaggaa
     3481 aaatatctcc aagcaaagga ggaagttttt gtcctggatt tgttttgata acattgattt
     3541 ttgaattgat aaaatcacat ataaaactat ccttttgaaa ataagcttta tcagggacta
     3601 gattatcttc ttttaagact agattgtctt cacttagggt ggctaaaatt tttgctatgg
     3661 tagcatagtg gtttggcgtg gtaaaaagag ttatgaaatc atatttgtct agtaattttt
     3721 caagcaaaaa gggtaattct ttatcggttt tattttgaaa acgagtttca tgaatttctt
     3781 taaatttatt ttcataacta cgataaatat aatccttaaa attttcattc attataagtt
     3841 catcaccgat aagaaaaagc aaatgtttca taattttttc cttttttata gtaattatag
     3901 ctaaatttta aattattttg agtagaattt aagattataa aaacttcatc taggtggaac
     3961 aatggattat aaagataccc tgcttttgcc aaatactact tttgcaatgc gcgctaattt
     4021 ggcagaattt gagccaaaga gatttgaaaa atggtttagc aagaattacg cttatgaaaa
     4081 aatgaaaaca aaacgcaaag aggcgaagaa agcttttact cttcatgatg gccctcctta
     4141 tgctaatgga catatccaca taggacatgc tttaaataaa atcttaaaag aaacgattat
     4201 caaaacgcat tattttaatg gagaaagcat tcgctttact ccaggttggg attgtcatgg
     4261 cttgcctata gaacagcaag ttgaaatcaa acttggagat aagaaaaaaa gcttgagtaa
     4321 aaaagaaatt cgatcatttt gtagagagca tgcaaacgaa tttgtgaaca tccaaagaga
     4381 tgaatttaaa agtcttggtg tgattgcgga ttgggataag ccgtatctta cgatgaaatt
     4441 tgaatttgaa gcggcgattt accgcacttt atgcgagatt gctaaaaaag gtttgctttg
     4501 cgagcgttct aaacctgttt tttggagttg ggcggctaaa tcagctcttg ctgaagctga
     4561 ggtagaatat gaagataaag aggattattc tatttt
//
LOCUS       DARAII010000131         4534 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.133, whole genome shotgun sequence.
ACCESSION   DARAII010000131 DARAII010000000
VERSION     DARAII010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4534
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.133"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(22..1428)
                     /gene="aspA"
                     /locus_tag="SB143_001759"
     CDS             complement(22..1428)
                     /gene="aspA"
                     /locus_tag="SB143_001759"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEF9750263.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFNISHERLKDFPR
                     FVRALARVKKAAAMANYELGLLDKDIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIALELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMMGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPNYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYAVIGADVTVTFASEGGQLQLNVFEPVIAYSLFNSIVMLEKAMHTLADKCIDGIS
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMSTGKRVADIALERGLLSKEQI
                     DEILTPANMLNPHMEAKK"
     gene            1692..2387
                     /gene="ung"
                     /locus_tag="SB143_001760"
     CDS             1692..2387
                     /gene="ung"
                     /locus_tag="SB143_001760"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEF9750264.1"
                     /translation="MKEITINIEDIKINNDWKEFLKEEFSKSYFLEIKKRYIQALNNK
                     AIIYPPSNLTFNAFNLTPLSELKIVLLGQDPYHQPNQAMGLSFSVPCGVKIPPSLLNI
                     YKELKADLNIEPSKSGDLSSWAKQGVLLLNSILSVEAGKPASHSSWGWQEFSDAVISK
                     LSLEKSGLIFILWGNYAKSKKALIDTKKHFILEAAHPSPLARTGFLGCKHFSKANEIL
                     KNLGKKPINWQLT"
     gene            2522..3214
                     /locus_tag="SB143_001761"
     CDS             2522..3214
                     /locus_tag="SB143_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEF9750265.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINETINNQLGNLNSAKILLYSVN
                     FEEIANLQKNGEWEKAAQILGECAKKLELGGADFILIATNTMHKIFDQIQKNIKIPLI
                     HIAQSTAKILKQQNIHTIGLLGTQYTMMEDFYKNALKKENINTITPNQSDMQELSDII
                     FNELCKGQMKENSKEKYLKIIQKLKDEGAQGIVLGCTEIGLLISQEDTNIPIFDTALI
                     HALDAVNLALKD"
     gene            complement(3211..3411)
                     /locus_tag="SB143_001762"
     CDS             complement(3211..3411)
                     /locus_tag="SB143_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2892 domain-containing protein"
                     /protein_id="HEF9750266.1"
                     /translation="MGKLERIIRIILALVIFSVGVYYASWWALIGFIPLLTGIFGVCP
                     IRVWTGKQACPLGVCPISKKKD"
     gene            3542..4165
                     /locus_tag="SB143_001763"
     CDS             3542..4165
                     /locus_tag="SB143_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEF9750267.1"
                     /translation="MDKEKILKEYFKNYNLENKDFEAMVEKSYFKEFDKNTILDDCLG
                     FVIVLKGGFRAFILGQNAKEITVFKLKQNEECVICSHCIFETISYNLTLESFEDTQIL
                     IVPVKIYSQLKDKYPLIANYTLNLIAKRFNSLINILEQALFTPLHHRVKMFLKENAKE
                     GKITFTHEEIALHLGSTREVISRILKTMQKEGFIQQNRKEITLLKDL"
     gene            complement(4361..>4534)
                     /locus_tag="SB143_001764"
     CDS             complement(4361..>4534)
                     /locus_tag="SB143_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C oxidase assembly protein"
                     /protein_id="HEF9750268.1"
                     /translation="QSSLTLKNASSSYYTLSVMAYVSLLVPFVLAYIIYVWNAMDKVK
                     ITREEIANDDHAY"
BASE COUNT         1638 a          746 c          612 g         1538 t
ORIGIN      
        1 atccatggtt aagcctttat attatttttt agcttccata tgtggattta acatatttgc
       61 aggagttaaa atttcatcaa tttgctcctt gcttaaaagt cctctttcaa gtgcgatatc
      121 agctactctc ttacctgtac tcatagcctc tttagcaata ctggctgaat tttcataacc
      181 tatataagga tttaaagcag ttacgatccc tactgagtta taaacaaaat cagaacaaat
      241 tttttcatta gcactaatac catctataca tttatctgct aaagtatgca ttgctttttc
      301 aagcataaca atagaattaa ataaactata agcaattaca ggttcaaaaa cattaagctg
      361 caattgtccg ccctcgcttg caaaagtaac ggttacatcc gctccaatta cagcgtaaca
      421 aacttgattt accacttcag ggataacagg atttacttta cctggcatga tagaactacc
      481 tggttgcatt tttggcaaat tgatttcatt aagaccgcat tttggaccac tgcttagaag
      541 tcttaagtca ttacatactt tagaaagttt tgttgcaacg cgttttaaaa cacctgaaat
      601 ttggacataa gctcctgtat cttgagttgc ttcgataaga tcttctgcca cagtgtattc
      661 aaagccggtt acttctctta tttttctttc tactactttt ggataattag gatgagaatt
      721 aatacctgtt cctatagctg ttccgcctaa attgatttct aaaatcagtt ttctagcttc
      781 taaaactctt tgtatatctt cacccatcat tactgcaaaa gttttaaact cacgacccaa
      841 agtcataggt actgcatctt gaagttgggt tctacccatt tttaatacat ctttaaattc
      901 ttctgctttt ctctcataag cttttttaag atgttccata gcttttgcca aatcacttag
      961 ataatcatgc aaagcaagat gcaaagcagt aggataagca tcatttgtac tttgacttaa
     1021 attcacatga tcgtttggat gaaggtattg atactcacct tttttatggc ccataagctc
     1081 aagtgctata ttggctatca cttcattggc attcatattt gtacttgttc cagctccacc
     1141 ttgtatcata tcaactacaa attgatcgta atatccgccc tctaaaattt tatcgcaagc
     1201 tttaataata gcatcttgga tatctttatc taaaagacct aattcataat ttgccatagc
     1261 agctgctttt ttaacccttg ctaaagctct tacaaagcgt gggaaatcct ttagcctctc
     1321 gtgtgaaata ttgaaatttt ccaccgctct aaaggtttgc actccataat aaacctcatc
     1381 agaaatttct aattccccga taaaatcgtg ctcttttctt gttcccattt gaaacctttc
     1441 ttaatttaat ttttcataca agctttatta cttgtactca tatcagtata atcatattgt
     1501 aattttggtt aataattagt taacaatatt tattctttag aaatactata aaatagactt
     1561 ttaggataat ttaactcttt ttatatttaa tttttattta ttaattaatt ttatttattt
     1621 cagtaaaaat taatatattt ttcttggctt gtttgataaa atataccttt aatttatttt
     1681 tggaagtttt tatgaaagaa attactataa acattgaaga tatcaaaata aataatgatt
     1741 ggaaagagtt tttaaaagaa gaatttagca aaagctattt tttagaaatc aaaaaacgct
     1801 atatacaagc tttaaacaat aaagccatta tctatcctcc ttcaaattta acctttaatg
     1861 cttttaatct tactcctttg agtgagctta aaattgtact tttaggacaa gatccttacc
     1921 atcaacccaa tcaagctatg gggcttagtt tttctgtgcc ttgtggggtt aaaattcctc
     1981 ctagtctttt aaatatttat aaagaattaa aagcagatct taatatagaa ccttctaaaa
     2041 gcggggattt aagttcttgg gcaaaacaag gagttttact tttaaattcc attcttagcg
     2101 ttgaagcggg aaagcctgca agtcatagct cgtggggttg gcaagaattt agtgatgcgg
     2161 tgatttcaaa gttaagtctt gaaaaatcag gacttatttt tatactttgg ggaaattatg
     2221 caaaatccaa aaaagcttta atcgatacaa aaaaacattt tattttagaa gcagcacatc
     2281 ctagtccact agctagaaca ggctttttag gttgtaaaca tttttcaaaa gctaatgaaa
     2341 ttttaaaaaa tttaggaaaa aaacctataa attggcaatt gacttagaaa aattatataa
     2401 atgttttttt aataatttaa aaatactaag cccgatttca tattttattc aaaaataaaa
     2461 taattaatat agatttttat aatttatcgt taaaatatat aaaaatttta aggagataga
     2521 agtgaaaacg ataggcatta taggtggaat gagttttgaa agtaccataa cctactataa
     2581 aactataaac gaaaccatta ataatcaact aggcaattta aattctgcaa aaattttact
     2641 ctatagtgtc aattttgaag aaatagcaaa tttgcaaaaa aatggcgagt gggaaaaagc
     2701 tgcgcaaatt ttaggagaat gtgctaaaaa attagaactt ggtggagctg attttatact
     2761 tattgccacc aacaccatgc ataaaatttt tgatcaaatt caaaaaaata taaaaattcc
     2821 tctcattcat attgctcaaa gcacagccaa aattctaaag caacaaaaca tacacaccat
     2881 aggcttacta ggcacccaat atactatgat ggaagatttt tataaaaatg cattaaaaaa
     2941 agaaaatata aatacaatca ccccaaatca aagcgatatg caagaactaa gcgacatcat
     3001 ctttaatgaa ctttgcaaag gacaaatgaa agaaaattct aaagaaaaat acttaaaaat
     3061 catccaaaaa ctaaaggacg aaggtgctca aggtatagtt ttaggctgca cagaaattgg
     3121 attgttgatt tcccaagaag atacaaatat cccaattttc gatacagcct taattcacgc
     3181 ccttgatgct gtaaatttag ctttaaaaga ttaatctttc tttttagaga taggacaaac
     3241 tcccaaagga caagcttgct ttcctgtcca aacccttata gggcacacac caaaaatacc
     3301 tgtaagcaaa ggaataaatc ctatcaaagc ccaccaagac gcataataaa cccctacact
     3361 aaagataacc aatgctagga ttattcttat tattctttct agtttaccca tttcttctcc
     3421 ttttgtataa tttaatcaaa gtataaacaa aaaaaatttt cttgtcagtg ataaaagtca
     3481 ctaaaaaata attaatctaa aaaagataca ataaaaatta aattcacaaa ggtagtctat
     3541 cttggataag gaaaaaattt taaaagaata ttttaaaaac tataatcttg aaaacaaaga
     3601 ctttgaagct atggtggaaa aatcatactt taaagaattt gacaaaaata caattttaga
     3661 tgattgttta ggatttgtga tagttttaaa aggaggattt cgtgcattta ttttaggtca
     3721 aaacgccaaa gaaatcaccg tttttaaact gaaacaaaat gaagaatgtg tcatttgttc
     3781 tcattgtatc tttgaaacta tatcttacaa tctcacccta gaaagctttg aagatactca
     3841 aattttaatt gttcctgtaa aaatatattc tcaactaaaa gataaatatc ctttaatagc
     3901 aaactatact cttaatctta ttgccaaacg ctttaattct ttgattaata ttttagagca
     3961 agctcttttc acccctcttc atcatagggt taaaatgttt cttaaagaaa acgcaaaaga
     4021 aggaaaaatc acttttacac atgaagaaat agccttacat ttaggcagta ctagagaagt
     4081 tatttcacga attttaaaaa caatgcaaaa ggaaggtttt attcagcaaa atcgtaaaga
     4141 gattacactt ttgaaagatt tatgataaaa atgcccatat aaatatgggc aaaattgcaa
     4201 tattttgaaa agatttaatc ctaaatcggt taaatcttta agaactttat agcttattgt
     4261 ctttttctaa ttgattgata ttaagcatga taaatttata gcttacataa atcaccaaag
     4321 gccaaaccaa taaaaacaaa gcatgtaaca ttttttctcc ttaatatgcg tgatcatcgt
     4381 ttgcgatttc ttcgcgtgtg atttttactt tatccattgc attccaaaca tagataatat
     4441 aagctaaaac aaaaggtaca agtaaagaca cataagccat gacgcttaga gtataatagc
     4501 ttgaacttgc attttttaaa gttaaagaac tttg
//
LOCUS       DARAII010000132         4506 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.134, whole genome shotgun sequence.
ACCESSION   DARAII010000132 DARAII010000000
VERSION     DARAII010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4506
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.134"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            1..380
                     /locus_tag="SB143_001765"
                     /pseudo
     CDS             1..380
                     /locus_tag="SB143_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516834.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
     gene            373..1338
                     /locus_tag="SB143_001766"
     CDS             373..1338
                     /locus_tag="SB143_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750269.1"
                     /translation="MSKILLEKLDDHFFCDDFGEDIYFQKEYAKFYGKVFEFVYKENG
                     NFLKIVANKKSIKNTSFFDLQSPYGYGGIYSNSMDKAFLTRALENLRQRALKENIVAF
                     FIRFHPFDKNLSFYEKKLDFFLKERKIVIVPIYKNLEQIRANYSPRIKTYVKKARKEL
                     EISKAKASDAKDFKRLYDETMRRNQAGEFYFFDDDYFKELFNFKQSLILKASYRGEIL
                     AYASFFLGKKFAYYHLSANKNEKNANAALLDFSFELCLNKNIDFILLGGGVKDDDNLF
                     YFKQKFSTLESFFYIGGIVFDVLNYKKFCKDYKNNFFLKYRNGGG"
     gene            1369..2490
                     /locus_tag="SB143_001767"
     CDS             1369..2490
                     /locus_tag="SB143_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEF9750270.1"
                     /translation="MKYCDYCVMPDTRPGLKFFKDENGKNICSACVNHKNKENIDYKA
                     RFKELEVLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLNINEFIDDEIKEENL
                     QLFFNPNKDKLDKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            2508..3183
                     /locus_tag="SB143_001768"
                     /pseudo
     CDS             2508..3183
                     /locus_tag="SB143_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            3223..4227
                     /gene="legI"
                     /locus_tag="SB143_001769"
     CDS             3223..4227
                     /gene="legI"
                     /locus_tag="SB143_001769"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEF9750271.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEETLNVLCK
                     NGAKRQNITLLHCTTEYPAPFNEVNLKAMQSLKDAFKLDVGYSDHTQGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPHELKTLCTQIRQIQKAMGDGIKKASKSERKNI
                     NIVRKSLVAKKDIQKGEIFNEENLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            4220..>4506
                     /gene="legG"
                     /locus_tag="SB143_001770"
     CDS             4220..>4506
                     /gene="legG"
                     /locus_tag="SB143_001770"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEF9750272.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKP"
BASE COUNT         1741 a          575 c          777 g         1413 t
ORIGIN      
        1 attatagatg tggcatcgct ttgttgcaac gatagagaaa agtcaaaaaa tattttcaca
       61 aaagccgtta gaaaacttaa aaagggtggc aagttttatt ctagtgcttt atccaagcaa
      121 gtttttggat atgaagctga caaaggagat tttttcgagc caaatcacgg aatttacatc
      181 aaaatgggtt ctttgcgttt tgatgatgaa aaaagcttaa aagaacttta taaagaatta
      241 aaatgtatca atttttatac ccaaacctta aaggataagc aaagtatcaa agaagaaatt
      301 ttaatctttg aaggtgaaaa aagctctata gaagctatgg gggggggatt atcaaaaaca
      361 aggctttaga aaatgagtaa aattctactt gaaaaattag atgatcattt cttttgtgat
      421 gattttggcg aggacattta ttttcaaaaa gaatatgcaa aattttatgg aaaagttttt
      481 gaatttgtct ataaagaaaa tggaaatttt ttaaaaattg tagccaataa aaaaagtata
      541 aagaatactt ctttttttga tttgcaaagt ccttatgggt atggtggaat ttatagcaat
      601 agcatggata aagccttttt aacgagagct ttagagaatt taagacagcg tgctttgaag
      661 gaaaatatcg ttgctttttt tataagattt catccttttg ataaaaattt aagtttttat
      721 gaaaaaaagc ttgatttttt cttaaaagaa agaaagatag tcatagtgcc aatctataaa
      781 aatttagaac aaatcagagc caattatagt ccaagaataa aaacttatgt gaaaaaagca
      841 agaaaagaac ttgaaatttc aaaggcaaag gcaagtgatg ctaaggattt taaaagactt
      901 tacgatgaaa ccatgagaag aaatcaagca ggtgagtttt atttttttga tgatgattat
      961 tttaaagagc tttttaattt taaacaaagc ttaatcttaa aagcaagtta taggggtgaa
     1021 attttagcct atgctagttt tttcttaggt aagaaatttg cctactatca tcttagtgca
     1081 aataaaaatg aaaaaaatgc caatgcggct ttacttgatt tttcttttga actttgttta
     1141 aacaaaaata ttgattttat cctacttggc ggtggggtga aggatgatga taatttgttt
     1201 tattttaagc aaaaattttc aacacttgaa agcttttttt acataggtgg gatagttttt
     1261 gatgttttaa attataaaaa attttgtaaa gattataaaa ataatttttt cctcaaatac
     1321 cgcaatgggg gggggtagtt atttttacaa tctttatatg gagtaaaaat gaaatattgt
     1381 gattattgtg ttatgccaga taccagaccc ggacttaaat tttttaaaga tgaaaatggc
     1441 aaaaatatat gcagtgcttg tgttaatcat aaaaataaag aaaatattga ttataaagca
     1501 agatttaaag agcttgaagt cttatgcgat aaataccgca gaatgaatgg aaaatttgaa
     1561 tatgattgtg ctattgccgt aagtggaggt aaagattcgc attttcaagt gcatatcatg
     1621 aaagaaaaac ttggaatgaa tcctattctt tttagcgttg aagataattt caccatgact
     1681 gaagcaggca agaaaaatct taaaaattta agtgaaactt ttggttgtca tatcattagc
     1741 ttaaagcctg atatcaaaac tcaaaaaaaa gttatgctaa aaacctttga aaaatatgga
     1801 aaacctactt ggtttattga tagactaatt tacagctatc cttttgctat ggctttaaaa
     1861 tttaatacac ctttattggt ttatggagaa aatgttagtt atgaatatgg aggtagtgat
     1921 accgaagaaa ctcctagcgc taaagaaata tttttaaatg gtgtagctag tgatttaaat
     1981 ataaatgaat ttatagatga tgaaatcaaa gaagaaaatt tgcaactctt tttcaatcca
     2041 aacaaagata aactcgataa acttaaccct atctatctaa gttattttgt aaaatggaat
     2101 tcttatagca attatatttt tgctaaaagt cgtggtttta ctgatctaga aggcgaatgg
     2161 gatagaacaa tgtgtgcaga aaattttgat caagttgata gtataggcta tatcctacac
     2221 gcttggatga aataccctaa atttggtcat gcttgtgcga gtgattacgc agctcgtttc
     2281 gtgcgttatg gacttttaag cagaaaagaa gctattgaac ttgtgcaaaa aagagatcat
     2341 aagcttgaca ataaatgcgt tgaagatttt tgcaatttca taggtattag taaaactaca
     2401 ttttggaaaa tagtagaaaa acattacaat atggatttat tttataaaaa tgattttgga
     2461 gaatttaaat taaaaaacaa attacaataa aaatataaag gaaaaaaatg caaaactcat
     2521 tagaagctta tacaatgaaa tataatgaaa atggatacgg attacttttt ccagatggtc
     2581 atgtagtacg tttttatgaa agaattttaa aatacaaact aaataaaata aatggaaatt
     2641 tacttgattt tggttgtggc aatggtgtac attcagcgta ttttcaaagc aaagggttta
     2701 aaacttttgg aatagatata gttccaagtt taaaagaaat ttgggagcaa aatattagcg
     2761 gggggggggt attgtaaaat tatagaacca aattctagca tcaaaggact ttttgatgaa
     2821 aatatggata ttatctttgc aaatcaaagt ctttactaca tacctctaaa agaacttaaa
     2881 caaaatattt tagaatttta cgaacttttg aacacaggtg gaatactttt tgctacaatg
     2941 atgagcaaga aaaattatta tttttcccac agtcaaaaag aagaaaaaaa tggcttgagt
     3001 aaagttgaaa ttaatggaag attaaatgaa acaagcttta tacatttcat cgataaagcc
     3061 gaagatctag aaaatctttt tcaacctttt gaaactttat ttctaggaga ttatgatcct
     3121 attaattttt ataattttga aggatcggca caccattata tttatatagg tattaaaaaa
     3181 taaaattttg cctttatttt aaggcaaaat aaaggcaaaa ctatgaaaaa aactttaatc
     3241 atcgcagaag caggagttaa tcacaatggt gatttaaatt tagctaaaaa gttaatagaa
     3301 atcgcagcag attcaggagc tgattttgtt aaatttcaaa gttttaaagc caaaaactgt
     3361 atcagcacaa aggctaaaaa agcaccctat cagcttaaaa ccacggctag tgatgagagt
     3421 cagcttcaaa tggtacaaaa actcgaactc gatcttaaag ctcataaaga gcttatctta
     3481 cacgcaaaaa aatgcaatat tgcctttctt tctactcctt ttgatcttga aagtgtagat
     3541 cttttaaatg agttaggctt aaaaatcttt aaaattccaa gcggagaaat caccaatcta
     3601 ccctatctta aaaaaattgc aaagcttaat aaaaaaatca tactttcaac aggcatggca
     3661 aatttaggcg agatagaaga aactttaaat gtgctttgca aaaatggcgc taaacgccaa
     3721 aatatcactc ttttacactg cactacagaa taccctgccc cttttaatga agtcaatctt
     3781 aaagccatgc aaagcttaaa agacgctttt aagcttgatg tgggttattc tgatcacact
     3841 caaggcatac acatttccct agctgcggtt gccttgggag cttgtgtgat agaaaagcat
     3901 tttactctag acaaaaatat gtcagggcct gatcataaag caagcctaga acctcatgaa
     3961 ctaaaaacgc tttgtactca aataagacaa atacaaaagg ctatgggtga tggcataaaa
     4021 aaagcaagca aaagcgaaag aaaaaatatc aacatagtaa gaaaaagttt agtcgctaaa
     4081 aaagatatcc aaaaaggaga aatttttaac gaagaaaatc ttactaccaa acgccccgca
     4141 aatggtataa gtgctatgag atatgaagag tttttaggta aaattgctac aaaaaactac
     4201 aaagaagatg agcttatccg tgagtaaaag aaagatttgt atagtcagtg caacaagggc
     4261 tgaatggtat cttttaagaa atttatgtca tgaaattcaa aacgataaag atctaagcct
     4321 tcaaatcatt gctacaggag cgcatttaag tcctgagttt ggactcactt ataaagaaat
     4381 agaaaaagaa tttaaaatca ctaaaaaaat ccctatcctg cttgcaaacg atgataaaat
     4441 aagcctttgt aaaagtatga gtttagcttt tagtgctttt agcgatgctt ttgaagactt
     4501 aaagcc
//
LOCUS       DARAII010000133         4482 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.135, whole genome shotgun sequence.
ACCESSION   DARAII010000133 DARAII010000000
VERSION     DARAII010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4482
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.135"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..485)
                     /locus_tag="SB143_001771"
     CDS             complement(<1..485)
                     /locus_tag="SB143_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEF9750273.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLASFGLKVWINYRSKPELAD
                     VLKDEILAQGGNAAVIKFDASKEDEFENGIKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFTSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQTNYSASKG
                     G"
     gene            complement(550..2028)
                     /locus_tag="SB143_001772"
     CDS             complement(550..2028)
                     /locus_tag="SB143_001772"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEF9750274.1"
                     /translation="MRQKCILVITDGIGFNKEKDFNAFEAAKKPNYERLFREVPNSLI
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGQIIYQNLVRINKAIESCELEKNANLKKLLQK
                     CKRVHVIGLYSDGGVHSMDTHFNALLEICAKNGNEVFAHAITDGRDVSPTSGLEFIRK
                     LKNHCEEIGVHFATLCGRFYAMDRDKRWERVKEYYDCLLGKSKGVSNWVDYIEECYQN
                     ETTDEFIQAAKNENYKGMQEDDGLIFVNFRNDRMKQLIEVLNSQNFKEFEREKVFENL
                     LTMSVYDDKFNIPVLFEKEEIKNTLSETISKAGLTQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPEMSAFEVCDVVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDVCLGEVVECARKHDYAFIITSDHGNCEAMQDKKGNLLTNHTTFDV
                     FVFVEAKGVDKLKENMGLSNIAASVLKILNLEIPKEMNEALF"
     gene            2108..3169
                     /locus_tag="SB143_001773"
     CDS             2108..3169
                     /locus_tag="SB143_001773"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEF9750275.1"
                     /translation="MYYLSYFSDYAFFTYISVRAGFAFFIALCLSLFIMPKFIAWAKN
                     KNANQPIYELAPQTHKVKSQTPTMGGLIFIGCAVFTSLLCAKLDNVFTITALLCLVLF
                     CLIGLVDDLGKILKKDNHSGLSPKMKLLAQISVGLICILPLYFSPEFNTEFYLPFYKY
                     PLFDMKIFALAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLVGFVFVLETISVILQVGSFKIFNKRVFKMAPIHHHFEKIGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            3169..4377
                     /locus_tag="SB143_001774"
     CDS             3169..4377
                     /locus_tag="SB143_001774"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEF9750276.1"
                     /translation="MRISLFGYGKTTQAIAKNLANQFGPFDIYDDHFQEKSKDEWGNH
                     LLNPKEFDEKVSELEIPSPGFPPNHNLIKKAKNLQSEYDFFYDAMPKSVWISGTNGKT
                     TTTQMATHLLSHVGAVMGANVGFPLAELDLNAKIWILETSSFTLHYTHTAKPEIYALL
                     PISADHLSWHGSFENYAKDKLSVLERMNECDIAILPEIYAKTPTKAYIISYKDEFDLA
                     QKMGIDIEKISFKSPFLLDAVMALSIEKILLDSLSYELLNQFIMEKNKLEELQDSQGR
                     LWVNDTKATNENAVMAALNRYKNKKIHLIVGGDDKGVDLSALFNFMKNFNIELYAIGL
                     STQKMLDYALKANLKARKCEFLENAVQEISKTLKNNEVALLSPACASLDQFSSYAQRG
                     EKFKECVGKI"
BASE COUNT         1434 a          853 c          625 g         1570 t
ORIGIN      
        1 attccaccct tgctcgcaga ataattagtc tgaccggcat tccccatttc accgacaatt
       61 gaagcaatat tcacaaccgc accaaaacgc tttttgctca ttgtttttaa agcctctcta
      121 caacctaaaa atgcagaact caaatttgta tccactacac ttgtaaaatc ttcgagtttc
      181 attcttaagg caagtttgtc gtttgtaaca cctgcattat ttacaagata gctaagctct
      241 ccatcgcttt ctactatagt ttttatccca ttttcaaact catcttcttt acttgcatca
      301 aatttaatca cagctgcatt gccgccttgc gcaagaattt catcttttaa aacatctgca
      361 agttctggtt ttgagcgata attaatccaa acttttaatc caaaacttgc caaagttttt
      421 gcaatagaag caccaatacc cttacttgca cctgtaatca aaacattttt tccactaaat
      481 ttcatttcta tccttaaaaa aaatataaaa ttaaatttta acaaaaatct atatcaaaag
      541 gtaaacagat caaaataaag cctcattcat ctcttttgga atttctaaat ttaatatttt
      601 aagcacactt gcagcgatat tactaagtcc catattttcc ttaagcttat ctactccctt
      661 agcttctaca aaaacaaaaa catcaaaagt tgtatgattg gtcaataaat ttcctttttt
      721 atcttgcatc gcttcacaat ttccatgatc acttgtaatg ataaaggcat aatcatgctt
      781 tcttgcacac tcgaccactt cgcccaaaca aacatctact gcttctacag ccttaatggc
      841 agcattaaaa tctcctgtat ggcctaccat atcaccattt gcaaagttca ccactataaa
      901 atcttcgccc ttttctatcc cttttttaac cacatcgcat acttcaaaag cgctcatttc
      961 aggcttttcg tcgtaagttt ttacctttgg acttgggatt aaaacccttg tttcattttc
     1021 caaaagttct tcttttcctc cattgaaaaa gaaagtaaca tgagcatatt tttcagtttc
     1081 tgcagtatga agttgagtaa gtcctgcttt ggagatggtt tcagaaagtg tatttttaat
     1141 ttcttctttt tcaaaaagta ctggaatatt aaatttatca tcataaacac tcatagtaag
     1201 caaattttca aacacttttt ctcgctcaaa ttccttgaaa ttttgagaat ttaaaacttc
     1261 gatgagttgt ttcattctat catttctaaa attaacaaaa atcaatccat catcttcttg
     1321 catgccttta taattctcgt ttttagccgc ttgaataaat tcatcagttg tttcattttg
     1381 ataacattct tctatataat caacccaatt tgacacaccc ttgctcttgc ctaataaaca
     1441 atcataatat tccttaactc tttcccaacg cttatctcta tccatagcat aaaaacggcc
     1501 acaaagcgta gcaaaatgca cgcctatttc ctcacaatga ttttttagct ttcttataaa
     1561 ttctaatcca cttgtaggac ttacatcgcg tccatcagta attgcatgtg caaaaacttc
     1621 atttccattt ttggcacaaa tttcaagcaa ggcattaaaa tgtgtatcca tagaatgaac
     1681 cccaccatcg ctatataaac caataacatg cactcttttg catttttgta gaagtttttt
     1741 taaatttgcg tttttttcaa gttcgcaact ctctatagct ttattaatac gcactaaatt
     1801 ttgatagata atttgcccac tacctataca catatggccc acttcgctat ttcccatttg
     1861 cccttcaggc aaacctaccg ctaaaccact agttttaatt aaagaatttg gtacttctct
     1921 aaaaagcctc tcataatttg gctttttagc agcctcaaaa gcattaaaat ctttttcttt
     1981 gttaaaacct attccatctg taataactaa aatacatttt tgtctcattt tttactcttt
     2041 tataagaaat tttttggcta gattttacta aaattaagct tttaaaaacc aaaaagaagg
     2101 ctagcttttg tattatcttt cttattttag tgattatgct ttttttactt atatcagtgt
     2161 acgcgcgggc tttgcatttt tcattgcttt atgcttgtct ttatttatca tgcctaaatt
     2221 tattgcttgg gctaaaaaca aaaatgcaaa tcaacccatt tatgaactag caccccaaac
     2281 tcacaaggta aaatctcaaa cgcctacaat gggtgggctt atctttatag gttgtgcagt
     2341 ctttacaagt cttctttgtg ctaaattgga taatgtattt acaatcaccg ccttgctttg
     2401 tcttgtgctt ttttgcctta ttggacttgt ggatgatttg ggtaaaattt taaaaaaaga
     2461 caaccactca ggacttagcc caaaaatgaa acttttagca caaataagcg taggattaat
     2521 ctgtatttta cctttatatt ttagccctga atttaataca gaattttatc ttccttttta
     2581 caaatatccg ctttttgata tgaaaatttt tgctcttgct ttttggattt tggtcttaat
     2641 ctccagctct aatgctgtca atttaaccga tggacttgac ggacttgcaa cagttcctag
     2701 cattttttct ttatctacct taggtatatt tttatatttg agtggaaatt taaattatag
     2761 cgaatatttg cttttaccta aaattcaagg cttgggcgag gtagtgatta tctgtgctgc
     2821 attgattgga gctcttatgg gatttttatg gtataactgc tatcctgcac aagtttttat
     2881 gggagatagt ggaagcttag ccttgggtgg atttataggt tttttagcca tcataagcaa
     2941 aaatgaaatc ttgcttttac ttgtaggctt tgtctttgtg cttgaaacca tttctgtcat
     3001 tttacaagtg ggaagcttta aaattttcaa taaaagagta tttaaaatgg cgcctataca
     3061 ccatcatttt gaaaaaatag gctgggtaga aaataaaatc atagtgcgtt tttggatgat
     3121 agccttgcta tctaatttac ttgcgcttgc atcgataaag ttaagataat gagaatttca
     3181 ctttttggat atggtaaaac cacacaggca atagctaaaa atttagccaa tcaattcggc
     3241 ccttttgata tctacgatga tcattttcaa gaaaaaagca aggatgaatg gggtaatcat
     3301 cttttaaatc ctaaagaatt tgatgaaaaa gtaagcgagc ttgaaattcc aagccctggc
     3361 tttccaccta accataacct tataaaaaaa gcaaaaaatt tacaaagcga atatgatttt
     3421 ttttatgatg ctatgccaaa atctgtttgg atcagtggta caaatggtaa aaccacaacc
     3481 acacaaatgg ctacacatct actttcacat gttggagcag taatgggagc aaatgtcggt
     3541 tttcctctgg ctgagcttga tttaaatgcc aaaatttgga tacttgaaac ttcatctttt
     3601 acacttcact atacccatac tgcaaaaccc gaaatttatg cacttctacc tataagtgcg
     3661 gatcatcttt catggcatgg aagctttgaa aattatgcaa aagataaatt gagcgtttta
     3721 gaaagaatga atgagtgtga tattgcaatc ttgcctgaaa tttacgcaaa aacacctaca
     3781 aaagcttata ttatctctta caaagatgaa tttgatcttg ctcaaaaaat gggtatcgat
     3841 atagaaaaaa tatcttttaa aagccctttt ttgcttgatg ctgtcatggc tttaagtata
     3901 gaaaaaattc tacttgatag tctaagctat gaacttttaa atcaatttat catggaaaaa
     3961 aataaactcg aagaattaca agatagtcaa ggtagacttt gggtcaatga tactaaagcg
     4021 accaatgaaa acgctgtaat ggccgctctt aaccgctata aaaataaaaa aattcatctt
     4081 attgtgggcg gcgatgataa gggtgtggat ttaagcgctt tatttaattt tatgaaaaat
     4141 ttcaacatag aactctatgc tataggactt agcactcaaa aaatgcttga ttatgcttta
     4201 aaagcaaatt taaaagctcg taagtgtgaa tttttagaaa atgctgtaca agaaatttcc
     4261 aaaacgctaa aaaacaatga agtagcttta ttaagccctg cttgtgcaag cttagatcaa
     4321 ttcagctctt atgctcaacg tggagaaaaa tttaaagaat gtgtaggtaa aatttaattc
     4381 accctccccc ccatcacata ttaattttta tcaaacacta atttaaaacg actcgtattc
     4441 ggcttagaat taaaattcat ttattaaaca acataccttg at
//
LOCUS       DARAII010000134         4463 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.136, whole genome shotgun sequence.
ACCESSION   DARAII010000134 DARAII010000000
VERSION     DARAII010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.136"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..98)
                     /locus_tag="SB143_001775"
     CDS             complement(<1..98)
                     /locus_tag="SB143_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit A"
                     /protein_id="HEF9750277.1"
                     /translation="MQKIKLSLMFLIVTIIFSACSSKEQQINPLGRS"
     gene            complement(86..316)
                     /locus_tag="SB143_001776"
     CDS             complement(86..316)
                     /locus_tag="SB143_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750278.1"
                     /translation="MEVVPAFAVGSCVGFRGFMSYVVGASLGTKAIGWAVDYYGSWNA
                     GLIMLLSACILCILCSILCHFGAKKKEDICKK"
     gene            complement(659..826)
                     /locus_tag="SB143_001777"
     CDS             complement(659..826)
                     /locus_tag="SB143_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate transporter"
                     /protein_id="HEF9750279.1"
                     /translation="MLYAVKGSPKNEGLVDITEINEMRGIKTEEIKAIETPNLSSFEI
                     FYHYVLKNKNA"
     gene            complement(1176..1466)
                     /locus_tag="SB143_001778"
     CDS             complement(1176..1466)
                     /locus_tag="SB143_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEF9750280.1"
                     /translation="MFDFFKPKVKAIKFPKEEILPRYYKMRAWSLSGVFIGYMGYYLV
                     RNNITLSTPFIQNQLELSKSDIGTITGSMLIAYGISKGAMSVLSDKADPKNT"
     gene            1629..2405
                     /gene="surE"
                     /locus_tag="SB143_001779"
     CDS             1629..2405
                     /gene="surE"
                     /locus_tag="SB143_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEF9750281.1"
                     /translation="MKEILITNDDGFESEGLKKLIKMLKKEFKAKITIVAPATEKSAC
                     SHSITLTKPLRFIKVGKRFYKLDDGTPADCVYLALHALYKTRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDFKNALKITKKIVQNIFDKGFP
                     LGKKEFLNINFPAKSNIKGIKICKAGKRVYNFEAHSNINPRGVEYYWLAAANLDFEDE
                     KDSDIALLKKGYVTITPIMLDLSAYDKMKKVKKWLKANNE"
     gene            2395..3054
                     /locus_tag="SB143_001780"
     CDS             2395..3054
                     /locus_tag="SB143_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEF9750282.1"
                     /translation="MMNDRFTRIKWLVSEENFNKISQTKVLVCGLGGVGGMCVDALYR
                     SGFQNLTLIDADKFEITNQNRQIHSENLGEEKAKVFARIYNAKGIVSKIDNEFLANFD
                     LSEFDLIIDAIDDIPAKVALANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     N"
     gene            3038..3496
                     /locus_tag="SB143_001781"
     CDS             3038..3496
                     /locus_tag="SB143_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEF9750283.1"
                     /translation="MLRKTDIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(3607..3987)
                     /locus_tag="SB143_001782"
     CDS             complement(3607..3987)
                     /locus_tag="SB143_001782"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEF9750284.1"
                     /translation="MNITLLKSKIHRASVTEARLDYVGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEVKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(3984..>4463)
                     /locus_tag="SB143_001783"
     CDS             complement(3984..>4463)
                     /locus_tag="SB143_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEF9750285.1"
                     /translation="FRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMVDDLNFDL
                     KIQICPIIREEDGLAKSSRNVYLSKEEREASLAISQSIFLAEKLVREGEKNTSKIIQA
                     MKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNFLVQGLK"
BASE COUNT         1600 a          715 c          707 g         1441 t
ORIGIN      
        1 gatcttccta aaggattgat ttgttgttct tttgaagaac aagctgaaaa aatgattgtt
       61 acaatcaaaa acattaggct taattttatt ttttgcatat atcctctttt ttcttagcac
      121 caaaatgaca caagatagag caaagtatac aaagtataca agcactaagg agcatgataa
      181 gaccagcatt ccaactacca tagtaatcca cagcccagcc tatagctttt gttccaagtg
      241 aagcgccgac tacataactc ataaagccac gaaatcctac acaagatcct actgcaaaag
      301 caggaacgac ttccatagtt tgcacacttg ctaaaaattg tggtatatag actaaacacc
      361 ccgccatagc tgcaaagaaa ataaccatat aaagattatt tgaagtaaaa tatccaataa
      421 tcataaagaa aataatcact atagcaccta tagcaggagg cattctatag cctttaaaaa
      481 ttttatctga aatatatcct gcaagtaaag tagaaggtat agcagcctat tcaaaaagcc
      541 aaaaggcaat acccatttgt tctttattaa agccttttgt ttctagcaag taaataggaa
      601 gccaagaaat aagcctaaaa cgcaccatat aaacaaaagt atccatccaa gccacatact
      661 aagcattttt gtttttaagt acataatgat aaaaaatttc aaaactgctt aaatttggag
      721 tttctatagc tttgatttct tctgttttaa tccctcgcat ttcattgatt tcagtaatat
      781 caaccaaacc ttcattttta ggacttcctt tgactgcata aagcacataa aggctaataa
      841 gtacagcaca aaaagcagga acataaaaat gattgatatg ctaatgtgtt tcattaaaat
      901 ctgccaagct tacgcctaaa aatgctgcta aagcaaatcc agaaagcgac actataggag
      961 cgattatacc tcctcctaaa ttgtgcgaga tattccaaat agctgtataa attccccgct
     1021 ctttttagga taccagtttg caagagtgat aaaagaagga cctaccccca taccttgaaa
     1081 aaccccaagc gcgataacaa aacctacata agcgtaaaaa gaatttgaaa aaccaagtaa
     1141 aacatttaca agagcacata aaataagacc taaagctatg tatttttagg atcagcttta
     1201 tcactaagta cgctcattgc gcctttgcta attccatagg ctataagcat ggaacctgtg
     1261 attgtcccga tatctgactt gctaagttcg agttgatttt gtataaatgg agttgaaaga
     1321 gtgatattgt ttcgtacaag ataatatccc atatatccta taaaaactcc acttaaactc
     1381 caagctctca tcttgtagta tctgggtaaa atttcttctt taggaaattt tatagctttt
     1441 acttttggtt taaaaaaatc aaacatgcat gctccgcctc ccttttttgt aatttattat
     1501 gtaaatatat taataaatat taaataaaaa tataattaaa aatagtatta aaattaatat
     1561 tttaaaatca aaatttatat tacaaaaata tgctacaatc caaattttat cttttgcaag
     1621 gaagagcaat gaaagaaatt cttattacca atgatgatgg ttttgaaagt gagggactta
     1681 aaaaactcat taaaatgtta aaaaaagaat ttaaagcaaa aattaccata gttgcgcctg
     1741 ctactgaaaa atcagcttgt tcacattcta taacccttac aaaacccttg cgttttatca
     1801 aagtaggaaa aagattttac aagcttgatg atggaacccc tgcagattgt gtttatcttg
     1861 ctcttcatgc gctttataaa acgcgtttgc ctgatcttgt gataagtggg attaataaag
     1921 gtgcaaatgt gggtgaagat atcacatatt caggtacttg tgcgggtgct atggaagcag
     1981 ttttacaagg aattccagcc atagctcttt cgcaatttta caaaaaaagt gaaaaagagc
     2041 ttgattttaa aaatgcttta aaaattacta aaaaaatcgt tcaaaatatt tttgataaag
     2101 gctttccttt aggaaaaaaa gaatttttaa acattaattt tccagcaaaa tccaatataa
     2161 aaggcattaa aatttgtaaa gcaggtaagc gagtgtataa ttttgaagcg cattcaaata
     2221 tcaatccacg cggagtggag tattattggc tagcagcagc aaatttggat tttgaagatg
     2281 agaaagatag cgatatagct ttattgaaaa agggttatgt gactataact cctataatgc
     2341 ttgatttaag tgcttatgac aaaatgaaaa aagttaaaaa atggttaaag gcaaataatg
     2401 aatgatagat ttacgcgtat aaaatggcta gtaagcgagg aaaacttcaa taaaatttca
     2461 caaaccaagg tgctcgtatg cggacttggt ggagtaggtg ggatgtgtgt agacgcactt
     2521 tatcgtagcg gttttcaaaa tcttacttta atcgatgcgg ataaatttga aatcaccaat
     2581 caaaaccgcc aaattcatag tgaaaatttg ggcgaagaaa aagctaaggt ttttgctaga
     2641 atttacaatg ctaagggtat agtaagtaaa atagataatg aatttttagc gaattttgat
     2701 ttaagtgaat ttgatttaat catcgatgca attgatgata ttcctgcaaa agtagcgctt
     2761 gcaaatttga tcgattttaa gcgtcaaatt tttatctcct caacaggtgg agctagaaag
     2821 cttgatccta cgcgtataaa aactacaagt atatttaaaa cccacggaga tgctttagcg
     2881 aaaaaattcc gttatgaact tagaaaatca ggctttaaag gaaattttga tgtggtattt
     2941 tcagatgagg aagcgcattg taaagatctt ggatctttta tgggtgtgac tgcatctttt
     3001 ggtttagccc tagccagctt ggcattaaga aaagttcttg ctaagaaaaa ctgatattaa
     3061 agatttaaat gcttgtttgt cgctttttga gcaaagcgta aaaacacttt gtgctaagga
     3121 ttatacaaaa gatcaaattt gtgcttggat taaaattgat agacaacaat gggaagaaaa
     3181 atttaaatat gatgagatct ttgtctatga gaaaagagga aaaatcgcaa gttttataag
     3241 tgttaaacaa gagcagaaat tgcttgattt gctttttact catcctgatt ttgttagaca
     3301 aggtttagca caaaatttac ttgattttat tttaaaaact tatttgcata atgaaattta
     3361 cactttcgca tccttaagtg ctaaagattt tttcttaaaa aatggttttg aacttataag
     3421 ggaaaacaag gttatcaaag agggacaaaa tttaaaaaaa tttttaatga aaaaagatgt
     3481 ggtttataaa aactagaagt taagataagc aaaaataatg gattaaaaga tataaaaatc
     3541 attttttact tatcttagat aaatgaattt atctaagata aaaaaaatta caaaaatagc
     3601 tagatgttag aaaatagctc cgtgtttttc ataatttgtt atttttgtag cagtgttatt
     3661 ttcatccaca aaaacaactt ttggtttaaa tgtttttact tcttcttcat taaaatcagc
     3721 ataagacatg atgatcacct tatctcccac ttctgcaaga cgagccgcag caccatttaa
     3781 gcatacaact ccttcttctt gcgtggctat ggtataggtt tcaaatctag cgccattatt
     3841 gacattgact acttggactt tttcgtattc taaaattcca ctcgcttgca ataatttttc
     3901 atctatactt atacttccta cataatcaag cctagcttct gttacgcttg cgcgatgtat
     3961 ttttgatttg agtaaagtga tattcatttt aatccttgta ctaaaaaatt atcaatgagt
     4021 cttgtttttc caacaaaagc agccaccgct cctaaaacat tatcagtgat attttcgata
     4081 ttttccatgg tgttaaaatc gactaattct atataatcga ttttgattag tttttctttt
     4141 tctaaaatat ctttcatagc ttggatgatc ttagaagtat ttttttctcc ctctcggact
     4201 aatttttcag ccaaaaaaat gctttgagat atagctagtg acgcttctct ttcttctttg
     4261 ctaagatata catttctaga gcttttagct aagccatctt cttctctaat gataggacaa
     4321 atttgaattt ttaaatcaaa atttaaatca tcaaccatat gcctaacgac tacgcattgc
     4381 tgcgcgtctt tttgccccat atagactata tcagggttta ggatattaaa aaatttagtt
     4441 aaaaccgtgc aaacgcctct aaa
//
LOCUS       DARAII010000135         4345 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.137, whole genome shotgun sequence.
ACCESSION   DARAII010000135 DARAII010000000
VERSION     DARAII010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4345
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.137"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..807
                     /locus_tag="SB143_001784"
     CDS             <1..807
                     /locus_tag="SB143_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEF9750286.1"
                     /translation="VLHGLFRVREFTQDDAHIFCIPSQIKEQVLEILAFVDNLMKLFD
                     FSYEMEISTKPEKAIGDDEIWDTATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKIT
                     DALKRKWQCGTIQVDFNLPERFKLEYTDSNNEKKQPVMLHRAILGSFERFIGILTEHC
                     AGEFPFFIAPTAVGIVPISDSHIAYAKEIQRALLELNIDSEVYEKNESLSKKIRTAEK
                     QKLPMILVLGDEEVAKRSVALRDRRAKEQKNLSLEEFIKLVKEKMSEVHF"
     gene            804..1322
                     /locus_tag="SB143_001785"
     CDS             804..1322
                     /locus_tag="SB143_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEF9750287.1"
                     /translation="MSKEKEVLLNEEIRADEIRCIGDDGKAYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENDANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            1362..2456
                     /locus_tag="SB143_001786"
     CDS             1362..2456
                     /locus_tag="SB143_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEF9750288.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLGFLNKGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLENYSKLINKCYLSNKDKNLTELLKHYHKILTQ
                     NLEFQAGFISELYAPKNEVCIQKDERVFYTLKNALYLDTLRQKIEKEIPEELKHFFIA
                     PLIYEASVHSNTSGVFKGFYKGRDGVGKFGGEAQNALKRIKGDIELKMPIFSNFSCEF
                     EVVQKDANLLAKELENIDVAYLDPPYNQHPYSSNYFMLNLIANYQRPDEISKISGIPR
                     DWNRSIFNKEKQAEDALFELINDLKAKIILLSYNCEGFVKKEKFLKRLQSLGKCQILE
                     QKYPTFRASRNLKNRSIHIHEQLYILKKNI"
     gene            2657..3685
                     /locus_tag="SB143_001787"
     CDS             2657..3685
                     /locus_tag="SB143_001787"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEF9750289.1"
                     /translation="MRLKVGILGASGYAGNELVRILLNHPKVEISYIGSSSSVGQSYM
                     KLYPNTPLNLNFEDKNLDELELDVLFTATPHEFSAKLFSESLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLKNAVYGLCELYQEEIKNANLIANPGCYTTCSILSLYPLF
                     KEKMIDLNSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYGLASHRHTPEIEEHLSY
                     AAGEKITLQFAPHLVPMQRGILTTAYANLKHSVSEKEIREIYQKYYQDRKFIRLLPPQ
                     SFPQTRWVKSSNFADINFSIDERTNRIIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            3696..4142
                     /locus_tag="SB143_001788"
     CDS             3696..4142
                     /locus_tag="SB143_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEF9750290.1"
                     /translation="MQVRAMQKSDYEGVYKLWCDIKGFGIRSIDDSKENIEKFLDRNP
                     NLSAVAVIDQEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMTKFCLEALKSEKI
                     NKIALIAFKSNDLGNEFWKHYGFTLREDANYYDLSLNSHNQTSFNV"
     gene            4152..>4345
                     /locus_tag="SB143_001789"
     CDS             4152..>4345
                     /locus_tag="SB143_001789"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989588.1"
                     /note="catalyzes the phosphorylation of
                     N-acetyl-L-glutamate to form N-acetyl-L-glutamate
                     5-phosphate; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEF9750291.1"
                     /translation="MQKYLEKANVLIEALPYIRKFSSKIILIKYGGSAMENEELKHCV
                     MQDIALLKLVGLKPIIVHGGG"
BASE COUNT         1563 a          575 c          839 g         1368 t
ORIGIN      
        1 gttttgcatg gactttttag agtgagagaa ttcactcaag atgatgcaca tattttttgt
       61 ataccaagtc agattaaaga gcaggtttta gaaattttag cttttgtgga taatttgatg
      121 aaattatttg attttagcta tgaaatggaa atttcaacta aacctgaaaa agccataggt
      181 gatgatgaaa tttgggacac agctactaaa gctttaaaag aagccttaga tgaacaaggc
      241 ttaaaatatg gcattgatga gggtggaggt gctttttatg ggccaaaaat cgatattaaa
      301 atcactgacg ctttaaaaag aaaatggcag tgtggtacca tacaagtaga ttttaatctt
      361 cctgaacgct ttaagctaga atacacagat agtaacaatg agaaaaagca gcctgtaatg
      421 ttgcatcgtg cgattttggg ttcttttgaa agatttatag gaattttaac tgaacattgc
      481 gcaggggagt ttccattttt tatcgcacca accgcagtgg gtatagtgcc gatttctgat
      541 tctcatattg cttatgcgaa agaaattcaa agagccttgc tagaattaaa tatcgatagc
      601 gaagtatatg agaaaaatga gagcttaagt aagaaaattc gcactgctga aaaacaaaaa
      661 ttacctatga ttttagtttt gggcgatgaa gaggtggcaa agcgaagcgt tgctttaaga
      721 gatagaagag ctaaggagca aaaaaatctt agcttggaag aatttattaa attagttaag
      781 gagaaaatga gtgaggtaca tttttgagta aagaaaaaga agtattgctc aacgaagaaa
      841 ttagagcgga cgaaatcaga tgtataggtg atgatggcaa agcatatggc attatcagca
      901 gtgatgaagc tttagagatt gcaaatcgtt taggacttga tcttgtaatg atagctgcag
      961 atgcaaagcc acctgtttgt aagattatgg attatggaaa attccgttat cagcaagaaa
     1021 aaaagcaaaa agaagcaaag aaaaaacaaa aagtaatcga tattaaagag attaaacttt
     1081 ctgtgaaaat tgctcaaaat gatataaatt acaaagtaaa acatgcttta gaatttttag
     1141 aacaaggtaa gcatgtgaga tttcgtgtgt tcttaaaagg gcgtgaaatg gcgactcctg
     1201 aagcaggtgt agctttgctt gaaaaaattt ggactatgat agagaatgat gctaatcgtg
     1261 ataaagagcc aaattttgaa ggacgctatg ttaatatgct tgtaactcca aaaaaagctt
     1321 aatctgtttt tacagataag ctttttaaag gtttaaaaat tttgaaggaa aatccctctt
     1381 ttttaaaaga acaaatcatt acttatttag gcaataaaag agcactttta ggatttttaa
     1441 ataagggctt taaggtagct aaaaaagaac ttggtaaaga taaatttagt ttttgtgata
     1501 tatttagtgg ctcaggtgtt gtaagtcgtt ttgcaaaagc acactcaaat tatattttag
     1561 ccaatgattt agaaaattat tccaaactta tcaacaaatg ttatctttct aataaagata
     1621 aaaatttaac cgagctttta aaacattatc ataaaatttt aacccaaaat ttagaatttc
     1681 aagcaggttt tataagtgaa ctctatgctc caaagaatga ggtttgcatc caaaaagatg
     1741 aacgcgtttt ttatactctt aaaaatgctt tatatcttga tactttaaga caaaaaatcg
     1801 aaaaggaaat tcctgaagag ttaaagcatt tttttatagc gcctttaatc tatgaagcaa
     1861 gtgtgcattc aaatactagt ggagttttta agggttttta taagggtaga gatggagtgg
     1921 gtaaatttgg tggagaggcg caaaatgcct taaagcgtat caaaggtgat atcgagctta
     1981 aaatgcctat tttttcaaat ttttcttgtg aatttgaagt ggtgcaaaag gatgctaact
     2041 tacttgcaaa agagcttgaa aatatcgatg tggcttatct tgatcctcct tataatcaac
     2101 acccttatag ttcgaattat tttatgctta atttaatcgc aaattatcaa aggcctgatg
     2161 aaatttcaaa gatttctggt ataccaagag attggaaccg aagtattttt aataaagaaa
     2221 aacaagcaga agatgctttg tttgagctta tcaatgattt aaaagccaaa atcattttgc
     2281 tttcttataa ttgtgagggt tttgtaaaga aagaaaaatt tctaaagcgt ttgcaaagct
     2341 taggtaaatg tcaaatttta gagcaaaaat acccgacctt tagagcctct cgcaatctta
     2401 aaaatcgttc cattcatata cacgaacaat tatacatact taaaaaaaat atttaattta
     2461 ttaatccatc aaaaggcatt aaaatctagt agcaaatctt agcgtccatt gtctttgtat
     2521 acaaaaagct tcgtgataat ttttgagata tatgagtatt tttgtaagag tctatcaaat
     2581 tttataaacc cataagtgtt attttaagca ttttttgtct ataattaagc catttgaaat
     2641 tcagtaagga ctaggaatga gattaaaagt aggaattttg ggagcaagcg gatatgcagg
     2701 taatgagctt gtgcgtatct tactgaatca tcctaaagta gaaatttcct atataggttc
     2761 tagttcaagt gtggggcaaa gctatatgaa gctttatccc aacacgcctt taaatttaaa
     2821 ttttgaagat aaaaatttag atgaacttga acttgatgtc ttatttaccg ctactccgca
     2881 tgaatttagt gctaaacttt ttagcgagtc tttattaaaa aagatgaaaa tcatagattt
     2941 aagcgctgat tttcgtctta aaaatcctaa agattatgag ctttggtata aatttactca
     3001 tcctaatcaa gagcttttaa aaaatgcagt ttatggactt tgtgagcttt atcaagaaga
     3061 gataaaaaat gcaaatttaa tcgcaaatcc tggttgctac actacttgct ctatacttag
     3121 tctttatccg ctttttaaag aaaagatgat tgatttaaat tcggtgatta tcgatgcaaa
     3181 aagtggagtc agcggcgcag gaagaagtgc aaaagtagaa aatctttttt gtgaggtaaa
     3241 tgaaaatatc aaggcttatg gattagcttc acaccgccat acccctgaaa tcgaagagca
     3301 tttaagctat gcagcaggag agaaaatcac tttacaattt gcccctcatc tagtacctat
     3361 gcaaagggga attttaacta ctgcttatgc aaatttaaaa cattctgtaa gtgaaaaaga
     3421 aattcgtgaa atttatcaaa aatattatca agacaggaaa ttcataaggc ttttaccacc
     3481 gcagtcgttt ccgcagactc ggtgggttaa atcaagcaat tttgcggata taaatttcag
     3541 catcgatgaa cgcacaaatc gtattattgt tttaggtgct attgataatt taatcaaagg
     3601 tgcagcagga caagctgttc aaaatatgaa tttaatgttt gattttgatg aagatgaagg
     3661 acttaaattc tttgcaaatt tgtaaaggat aaaaattgca agttagagca atgcaaaaaa
     3721 gtgattatga aggagtttac aagctttggt gtgatatcaa aggttttgga attcgatcga
     3781 ttgatgatag taaagaaaat atagaaaaat ttttagatag aaacccaaac cttagcgcag
     3841 tagctgtgat tgatcaagaa attgttggaa gtatactttg tgggcatgat ggtcgcacag
     3901 gaggttttta tcatgtgtgc gtgcataaag atcacagaaa aaagggtata gcccatgaaa
     3961 tgacaaaatt ttgccttgag gcattaaaat ctgagaagat taacaagatc gcattgatag
     4021 cctttaagag caatgatttg ggtaatgagt tttggaagca ttatggtttt accttaagag
     4081 aagatgcgaa ttattatgat ttatcgctca attctcacaa tcaaactagt tttaatgttt
     4141 gagggtaaat catgcaaaaa tatttagaaa aagcaaatgt cttaatcgaa gctttgcctt
     4201 atatacgcaa attcagctca aaaattatac ttataaaata cggcggctca gctatggaaa
     4261 atgaggagct taaacattgt gtgatgcaag atatagctct tttaaagctt gtaggcttaa
     4321 agcctattat cgttcatggt ggggg
//
LOCUS       DARAII010000136         4304 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.138, whole genome shotgun sequence.
ACCESSION   DARAII010000136 DARAII010000000
VERSION     DARAII010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4304
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.138"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..376
                     /locus_tag="SB143_001790"
     CDS             <1..376
                     /locus_tag="SB143_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750292.1"
                     /translation="KLSHNAENYNSFLDHFVENGKLKLNIFSEIFTKMTKNTKWYLIF
                     FSFTSIGLGIALGILILLTYIKYSEYNNLKERVSTITQGLATISIDENSKGSFTLSFA
                     KNKKTIFNENKNSIQITLQGGE"
     gene            450..1070
                     /locus_tag="SB143_001791"
     CDS             450..1070
                     /locus_tag="SB143_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750293.1"
                     /translation="MAFGKLVNDKIVIDTNNALNYRSREGDIQQRKVDTALIDIIKEA
                     GQVAAMEHGAVLFSAKVNEVWKNYFVNRDEKTHNIVLKPTNSQNRDDFIYINSNINEQ
                     GYFYYTINQKRESAKELIEGVGIVEHQNQDGTKSHYLETNVRLYNEELKRELKEKGNE
                     FIAVISNAGIKVVNEAEMKAQKQEQQIQQTQEIKEPEKTQNQEFGR"
     gene            1157..1798
                     /locus_tag="SB143_001792"
     CDS             1157..1798
                     /locus_tag="SB143_001792"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750294.1"
                     /translation="MKVNYIELEKKEGQIGNIPYIIIKVEYPNLKKLQENDLLMANDK
                     GQWLCGFIGLKENQKVDFKELDNGYIAPQYLYLNSKDQKEIDLFSNNLEITKVLQFDL
                     NHSWNKTEKNTQLDEEECLKIIKNTIEYINNFNKNISKQEFEELSKEENTHKTHKLIE
                     RLMMQEEGTSGLIEKDLKEIKKDKSYFFDKMSSFAKNQTIEKSRTKEDYSINN"
     gene            1809..4001
                     /locus_tag="SB143_001793"
     CDS             1809..4001
                     /locus_tag="SB143_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 3"
                     /protein_id="HEF9750295.1"
                     /translation="MKLFIAEKPELGRAIAEGLDGNYKSGEGYIQKGDNIVTWAFGHI
                     LELAKPEEYDEKYKLWKLEDLPLPIKEFKYLPKKESKKQLKIICDLIHSDKITSIVNC
                     GDADDEGQILVDEIIQYSKTSKPVFRVLINDLTPKAVKEEIAKIKPNADFKGMSERGF
                     ARSQADWIVGINLTRAYTIMARKNGYEGVLSVGRVQTPILALIVNRDKEFENFKSIDY
                     YSLLGDFNINNNTIKARLKTEDKILDENLAKKIKESYENQNAKINLKIENKKEYPPLP
                     YNLLVLQAECAKLFGFSPDKTLEITQNLREKHKAITYNRSDCQYLPETMFEQAPNILN
                     IIKENLNSNDEIQALIASSDLTIKSKAFNDANISAHYGIIPTQNKISSQLTQDELVVY
                     NLIAKRFIIQFFHPREYQTTTISLEVNQRIFTATQNKTTKSGFRSLWQNVDSEEEQEN
                     NENDINDLSILKNGDIAKCSLIQIEKKQTKPRPYYTMTTLLKDLNSVAKYVSDERIKK
                     LLMEKDKDKKGESGGIGTPATRSNHIKTLIEREYIEVSKDKKQIIKSTKKGRDLIKLS
                     PKSLITPDMTALWFEQQKMIEISELRREQFLEEITKEVISEIQRIDKNQEFKILDNEN
                     KPKIQCPQCNKGFLTKRKGKYGNFWGCSEYMEGCKAIYPDNKGTPNFETKQASNDTTH
                     KCPQCNKGFLQRIKSKNGNSWWWGCSEFKQGCKAMYYDDNGKPKIINV"
BASE COUNT         1908 a          503 c          677 g         1216 t
ORIGIN      
        1 taaactttct cataatgcag aaaattataa ttcatttctc gatcatttcg ttgagaatgg
       61 aaaattaaaa ttgaatatat tttcagaaat ttttacaaaa atgacaaaaa atacaaaatg
      121 gtatcttata ttttttagtt ttacttctat agggttaggt atagctcttg gcattttaat
      181 tttgcttact tatataaaat attcagaata taacaattta aaagaaagag taagcacaat
      241 cactcaaggt ttagccacta tctctattga tgaaaatagc aaaggaagct ttaccttgag
      301 ctttgcaaaa aacaaaaaaa ctatttttaa tgagaataaa aatagtattc aaatcacact
      361 acaaggaggt gaatgaacag gggaattata tacaaaaaaa atgcaaaaaa caaaaaacaa
      421 atcacaaatt tattaaaaaa ggagaaaaaa tggcatttgg aaaattagtt aacgataaaa
      481 ttgttatcga tacaaacaat gctttaaatt atagaagcag ggaaggtgat attcaacaaa
      541 gaaaagtaga tactgctctc attgatatta ttaaagaagc tggacaagtt gccgcaatgg
      601 aacacggagc tgtgcttttt tccgcaaaag ttaatgaggt gtggaaaaac tattttgtta
      661 atagagatga aaaaactcac aatatagttt taaaacctac aaattcacaa aatagagatg
      721 atttcattta tatcaactct aatataaatg agcaaggtta tttttactac acaattaatc
      781 agaagcgaga atctgcaaaa gaattaattg aaggagttgg aattgtagaa caccaaaatc
      841 aagatggaac taaaagtcac tatttagaaa ctaatgtaag gctttataat gaagaattaa
      901 aacgagagct taaggaaaaa ggtaatgagt ttatagctgt aatttcaaat gctggaatta
      961 aagttgttaa tgaagctgaa atgaaagcac aaaaacaaga acaacaaata cagcaaactc
     1021 aagaaatcaa agagcctgaa aaaactcaaa accaagagtt tggaagataa aaatatgcac
     1081 cttataaagg tgcatattta tagttattat tatttattaa tagtaattat aagtaacaaa
     1141 attaaaagga ataaaaatga aagtaaatta tatagagctt gaaaaaaaag aaggacaaat
     1201 aggcaatatt ccatatatta taataaaagt tgaatatccg aatctaaaaa aattacaaga
     1261 gaatgatctt ttaatggcaa atgataaagg acaatggctt tgcggtttta taggcttaaa
     1321 agaaaatcaa aaagtagatt ttaaagaatt agataatgga tatatagctc ctcaatattt
     1381 atatttaaac tcaaaagatc aaaaagaaat tgatttattt tcgaataatc tagaaattac
     1441 aaaagtttta caatttgatt taaatcattc ttggaataaa accgaaaaaa atactcaatt
     1501 agatgaagaa gaatgcttaa aaatcattaa aaacaccata gaatatatta ataatttcaa
     1561 taaaaatatc agcaaacaag aatttgaaga gctaagtaaa gaagaaaata cccataaaac
     1621 tcataaatta attgaaagac ttatgatgca agaagaagga acaagtggat taatagaaaa
     1681 agatttaaag gaaataaaaa aagataaaag ttattttttt gacaagatga gtagttttgc
     1741 aaaaaatcaa actatagaaa aatcgaggac aaaagaagat tatagcatta ataactagaa
     1801 aggtgaaaat gaaattattt atagcagaaa aacccgaact tggtagagca attgcagaag
     1861 gactagatgg caattataaa agcggagaag gatatataca aaaaggtgat aatattgtta
     1921 cttgggcttt tgggcatatt ctagagcttg cgaaacctga agaatatgat gaaaaatata
     1981 agttgtggaa acttgaagac ttaccactac ccattaaaga atttaaatat ttacccaaaa
     2041 aagaaagtaa aaaacaatta aaaattattt gcgatttaat tcatagcgac aagattactt
     2101 ctattgtaaa ttgtggggat gcggatgatg agggtcaaat tctcgttgat gaaattattc
     2161 aatactccaa aacttctaaa cctgtattta gggttttaat caatgattta acaccaaaag
     2221 cagtaaaaga agaaatagca aaaattaagc caaatgcaga ttttaaagga atgagcgaaa
     2281 gaggttttgc aagaagtcaa gcagattgga tagttgggat aaatcttact agggcttaca
     2341 ccataatggc acgaaaaaat ggatatgagg gcgttttaag tgtaggtaga gttcaaacac
     2401 ctattttggc tcttatagtt aatagagata aagaatttga aaattttaaa agtatagatt
     2461 attattcttt gctaggtgat ttcaatatca acaataatac tattaaagca agattgaaaa
     2521 cagaagataa aattttagat gaaaatttag ctaaaaaaat caaagaatct tatgaaaatc
     2581 aaaatgcaaa aattaattta aaaatagaaa acaaaaaaga atatccaccg ctaccttata
     2641 atctacttgt tttacaagct gaatgtgcaa aactttttgg ttttagccct gataaaacat
     2701 tagaaatcac tcaaaattta agagaaaaac ataaggctat aacttataat agatcagatt
     2761 gtcaatattt acctgaaaca atgtttgaac aagcaccaaa tattttaaat attataaagg
     2821 aaaatttaaa ttctaatgat gaaattcaag ctctcattgc tagcagtgat ttaacaataa
     2881 aaagcaaggc ttttaacgat gctaacattt cagcacacta tggaataatc cctacccaaa
     2941 acaaaatttc atcgcaatta actcaagatg aattagtcgt ttataatcta atcgctaaaa
     3001 gatttattat tcaattcttt catcctagag aatatcaaac cactacaatt agtttagaag
     3061 taaatcaaag aatttttacc gctactcaaa acaagacaac aaaaagtggt tttagaagtc
     3121 tttggcaaaa tgtagatagc gaagaagaac aagaaaataa tgagaatgat ataaacgatt
     3181 tatctatctt aaaaaatggt gatattgcaa aatgctcttt gatacaaatt gaaaaaaagc
     3241 aaacaaagcc acgcccttac tacactatga caacgctact taaagattta aatagtgtcg
     3301 caaaatatgt gtctgatgaa agaattaaaa aattgctaat ggaaaaagat aaagacaaaa
     3361 agggtgaaag tggtggcata ggaacacctg caacaagatc taatcatata aaaacattaa
     3421 ttgaaagaga gtatatagaa gtaagtaaag ataaaaaaca aattatcaaa tccactaaaa
     3481 aaggtagaga tttaattaaa ctttctccaa aatcacttat tactcctgac atgacagcat
     3541 tgtggtttga gcaacaaaaa atgatagaaa tatcagaatt aagaagagaa caattcttag
     3601 aagaaatcac aaaagaagta attagcgaaa ttcaaagaat tgataaaaat caagagttta
     3661 aaatactaga taatgaaaac aaaccaaaaa ttcaatgtcc gcaatgcaat aaaggatttt
     3721 taaccaaacg aaaagggaaa tatggaaact tttggggttg tagcgaatac atggaaggtt
     3781 gcaaagccat ttatcctgat aacaaaggca caccaaactt tgaaacaaaa caagcaagca
     3841 acgatactac tcataaatgt ccgcaatgca ataaaggatt tttacaaaga ataaaaagta
     3901 aaaatggtaa tagttggtgg tggggttgta gtgaatttaa acaaggttgc aaggctatgt
     3961 attatgacga taatggaaaa cctaaaataa taaatgtata atattaataa atattatttt
     4021 attttaatta atttaaatta attttaataa ataatatttt ataataattc aaataatgga
     4081 gtagtagata tgccatacct atggcataag tgattttttt gtttatggta aagaagccaa
     4141 aacaaggttg tccgagttta atcagaataa aaggagaaaa aatgaatgac aaaagaaaag
     4201 ttagggaatt tctgtcttat gcggagaaat atctgtctta tgtgttattt ttttgaaaac
     4261 caataattga tttttttcaa aatgcagaat atgaaaaaga attg
//
LOCUS       DARAII010000137         4298 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.139, whole genome shotgun sequence.
ACCESSION   DARAII010000137 DARAII010000000
VERSION     DARAII010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4298
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.139"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1347)
                     /locus_tag="SB143_001794"
     CDS             complement(<1..1347)
                     /locus_tag="SB143_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEF9750296.1"
                     /translation="MLAPDMGVWLYKANLFLFGEFAYYYPFFLFILNYVYYKRNYKLA
                     NFTRRELFGIGFAFFSSLLLFAVFYPNSGYILELAYAIFSTILGHTGSGIFALLLLFF
                     SFILLFPKTTKELFKIEINFNILLKIENALKVLLMRVFGGENEKDDLSKIEPKAPIVT
                     LEKNTAFVQEKIQHEKENLNLNPTEELVKYNNINASKNSIITAKENFEKLKNQILDEK
                     VEIDKESIKEAKSFIYENSQQVRNFAQKASRMSIKLDEDFNFISEEEVDMIPERFLKP
                     KKLEDIKQIDTSNKNLDEPSYKRKNIEISIPKQEIKPKIFTKELELRENLMKEAKLEQ
                     EYKAYQNEILENKVQEEIKELEKKDSLEPNLNHIIQGSKYNFGTPLQEVSSAKEEIKT
                     QNAPIPSILEKTNEVEIIDFDESEIEIKKMESINKSIHDFIPIVEELEHPYIEPTPI"
     gene            complement(1458..3710)
                     /gene="flgL"
                     /locus_tag="SB143_001795"
     CDS             complement(1458..3710)
                     /gene="flgL"
                     /locus_tag="SB143_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEF9750297.1"
                     /translation="MRITNKLNFTNSISTSMGAQSSLYQISQQLSSGIKIQNSYEDAS
                     VYIDNTRLEYELKTLEQVKQATNSAKEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQSYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGTLYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADTKDE
                     LKNIIEAANQEGISMNEVTNRVMQAATAAPSNGDITKLNNPVTVTINNQQFTIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNANYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDESNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQTQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            3960..4046
                     /locus_tag="SB143_001796"
     tRNA            3960..4046
                     /locus_tag="SB143_001796"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3994..3996,aa:Leu,seq:caa)
BASE COUNT         1342 a          679 c          594 g         1683 t
ORIGIN      
        1 aataggagta ggctctatat aaggatgttc caattcttca actataggta taaaatcatg
       61 gatgctttta tttatgcttt ccattttttt gatttcaatt tcactttcat caaagtctat
      121 aatttcaacc tcatttgtct tttctaagat agaaggaatt ggtgcatttt gtgtttttat
      181 ttcttctttt gcgcttgata cttcttgcaa aggtgtacca aaattgtatt tacttccttg
      241 tatgatatga tttaaattgg gctctaaact atcctttttt tctaattctt taatttcttc
      301 ttgaacttta ttttctaaaa tttcattttg ataagctttg tattcttgtt ctaattttgc
      361 ctctttcatt aaattttctc taagctctaa ttctttagta aaaatttttg gttttatttc
      421 ttgcttaggt atagaaattt caatattttt tcttttatag cttggctcat ctaaattttt
      481 attgcttgtg tcaatttgtt taatatcctc aagcttttta ggttttaaaa atcgttctgg
      541 gatcatatct acctcttctt ctgaaataaa attaaaatct tcatcaagtt ttatactcat
      601 tctactcgct ttttgggcaa aatttcttac ttgttgcgag ttttcataaa tgaaactttt
      661 agcttctttt atgctttctt tatctatctc tactttttcg tctaaaattt ggtttttgag
      721 tttttcaaag ttctcttttg cggtgattat ggaatttttg cttgcgttta tattgttata
      781 tttaacaagc tcttctgttg gatttaagtt taaattttcc ttctcatgtt gaattttttc
      841 ttgaacgaaa gctgtattct tttctaaagt aacaataggt gctttaggct ctatcttgct
      901 taaatcatct ttttcatttt ctccaccaaa aactctcatt aataatactt ttaaagcatt
      961 ttctattttg agtaaaatat taaaattgat ttcaatttta aaaagctctt ttgtagtttt
     1021 tggaaacaat aaaataaaag aaaaaaacaa aagtaaaaga gcgaaaattc cgctcccagt
     1081 atgccccaaa atagtagaaa aaatcgcata agcaagctct agtatatagc ctgaattagg
     1141 ataaaaaact gcaaataaaa gcaaactcga gaaaaaggca aatcctatac caaaaagctc
     1201 tcttcttgta aaattagcta atttgtaatt tcttttataa taaacataat ttaaaataaa
     1261 taagaaaaaa ggataataat acgcaaattc tccaaacaaa aacaaatttg ccttataaag
     1321 ccaaactccc atatctggag ctagcataca aagacacaga taaaagatac caaaagtaga
     1381 acttgtaaag atggcttctt ttttgatgat ttttccttga aaataatttt ttaagaagcc
     1441 attatagcat agttttttta catataattt aataagctaa gttgagaaat tgttgtacta
     1501 gctttaagag aagcttgata agcaagctgt gtttgcatta aattcatcat cgcctcacca
     1561 taatcaacat caatcacatt tgattttata ctttggacat taacgcttaa aaaggatgtg
     1621 cgtgtattaa caccttcgat agtattatga tatgctccca tagttgtatt aagcttgcta
     1681 acatgatctg ctaaatgatc aagtctttct aaagctcctt gcatacctgt atttctaggg
     1741 ttttcacttt cggagtctgc tctcatattg ccttttaaaa cagcatcaat cattgaatct
     1801 aaatctttaa taatatccac atttgattca tctatagtta aagaattatt cgcgctaaaa
     1861 ctaaaatttg gaccattttg tacagtagaa gttgtggtaa aaggaggtgc tggaaattgg
     1921 ccactttgag aatcactaag agaaatttct atattggttc ctgatgaaag tttatcagta
     1981 acactaatac gacctttata atccatactt acatcaacag tagcttgtga atctttcatg
     2041 agttgttgta tttgggtata atttgcatta ttaatttgac cattattggc ttgtatggtt
     2101 gttgtaggaa ttttatctgc agcaaacata cctataatat cattaatttg accataagta
     2161 atatcatttg atcctgtaac aaccccacta tttccagttg caggattagt atgcataata
     2221 ggaaagctta tggtttgacc tggattatta ggatcaggat agcttacagt tgaagtttgt
     2281 aaatttatag taacatcgta agaatttcca cctttggaat tgacttttaa atttaaagta
     2341 gtaccattta ggctatctcc tgccattacc tcgctaagtt tggttgaatc agtggcataa
     2401 gcattgcttc ctttgataac ttgagaaaca ttaccataaa cagtattgcc atttttttca
     2461 aaatacacat tatcgtaatc agctccatta gcagcatttc catctgtatc tgtcatttta
     2521 cttttgataa aatcagtttg ttttaaatcg attgtgaatt gttgattgtt gattgttaca
     2581 gttacagggt tgtttaattt tgttatatct ccattactag gagcagccgt agcagcttgc
     2641 ataaccctat ttgtaacttc attcattgaa ataccctctt gattagcagc ttcaataata
     2701 tttttaagtt catctttggt atcagcttgt ggtgtgaaag ctacagcatg aaaatcgagt
     2761 ttattattac cttgctttag atctgtaatt tgaatttgac cactatcatt catacttact
     2821 tctactactt tattatttgg agtattacca taaagagttc caatattttc cattacatct
     2881 tctaaagtat cttcgggttt gacgagtaca gcacttttaa aacttgttcc atcgggtctt
     2941 gtaccttgaa cataaagagt tgttggagga aaatctagtt tgctatcatc atactcaaag
     3001 tctttgtcag catctaagct attatctttt acataacttt gtccgataag ttgttgccat
     3061 ttagaatctc ctgtgagata tttagtttta tcagggtctt tatttaaatc ccaacgatta
     3121 tctgtaaaac taacattagt gcttatttgt tttttatagt ctccatctgc tttaaaaaat
     3181 aaatcccaac ctggtatatt gtatgggctt tcagttccag ctccagttac tacattaata
     3241 ttatttttat ctccataata atttccatta gaatcaaaag gtttgtttgc aacttgagaa
     3301 cccgcaaaaa gatattgtcc attaacgcta gtattagcaa gctgaactat gctttcttta
     3361 atgcgttcta gttctttggc tatagcctct cttgaagttt gagaattact atcgcttgct
     3421 gcttgagtaa cctttacttt aaaatcctca agaagcttaa ccatatcttg taaagctttc
     3481 atgctatttt gcgtcatttc tttagctgag tttgtagctt gtttaacttg ctctaaagtt
     3541 ttgagttcat attcaaggcg agtattatct atataaacac ttgcatcttc ataagaattt
     3601 tggattttaa tccctgatga aagttgctgc gaaatctgat acaaagagct ttgagcgccc
     3661 atagaagtgc ttatagaatt tgtaaagttg agtttatttg taattctcat attcatcctt
     3721 ggagttttga tttaaataaa tcttttcaaa cattgctttg taaatacaag caataattgt
     3781 tccaatttta tttttacaat atcggcatca ataaaaattt aataatattt tatccttaaa
     3841 aaattttgat atttttcata caaaactcca tttaagcaaa taaaaaataa attttaaaat
     3901 attttatata tttttaaagt cttttttagt ctaaaataga tataattaca ccttacaaag
     3961 cctgagtggt gaaactggta gacgcgccag actcaaaatc tggtaagggc aaccttgtgt
     4021 cggttcgagt ccgacctcag gcaccattcc acttgaattt aactaacttc aaagatttta
     4081 ttataaaaat atttatcatt tgtattttta ttgtttccat ttgttttgaa aaattcattt
     4141 aatattagtt tttcccagtt aaagcattta ttataatata tgaagaatat ttttatgcaa
     4201 gcaaatatgc tttaaattat gttaaacatt taattataaa ttatttaaaa ataataagcg
     4261 cactctctta aaataagata aaaatagccc tatattct
//
LOCUS       DARAII010000138         4254 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.140, whole genome shotgun sequence.
ACCESSION   DARAII010000138 DARAII010000000
VERSION     DARAII010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4254
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.140"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..336
                     /locus_tag="SB143_001797"
     CDS             <1..336
                     /locus_tag="SB143_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEF9750298.1"
                     /translation="NFSEELNQETLKLIDFTTQKFKAKEGFTFPHMGWNQVHSSHALF
                     KGLEGAYFYFVHSYCVGLGEYTIADCEYSQKFSASVMKDNFYGVQFHPERSSEAGEIL
                     ISNFIKDIG"
     gene            333..1064
                     /gene="hisA"
                     /locus_tag="SB143_001798"
     CDS             333..1064
                     /gene="hisA"
                     /locus_tag="SB143_001798"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEF9750299.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQLALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLVN"
     gene            1049..2005
                     /locus_tag="SB143_001799"
     CDS             1049..2005
                     /locus_tag="SB143_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEF9750300.1"
                     /translation="MSSKLSYKELALEILKQSDKPLNANEIWQKALEKGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPRTFWLKERENELLKLDDKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYD
                     DYEKETITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQE
                     IDSEVLSELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKE
                     FIDDINKQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            2006..2773
                     /gene="hisF"
                     /locus_tag="SB143_001800"
     CDS             2006..2773
                     /gene="hisF"
                     /locus_tag="SB143_001800"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEF9750301.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDITASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLTTRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKEVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FELGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            2775..3398
                     /locus_tag="SB143_001801"
     CDS             2775..3398
                     /locus_tag="SB143_001801"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEF9750302.1"
                     /translation="MQNFKELNEKIAWQKVDHLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIVDLSLDCDNDTLLILVDPIRATCHIGN
                     ISCFENVSKNADFVFLARLEKLINSRKNADENTSYTAKLFKKGTKRIAQKVGEEGVET
                     ALAATVKDKDELICEAADLMYHLSVLLADANLSFSDVIAKLKERHKE"
     gene            3400..3966
                     /locus_tag="SB143_001802"
     CDS             3400..3966
                     /locus_tag="SB143_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750303.1"
                     /translation="MKNIILGFLIFFIYPALMMFFILMHRKYISEVPMLGFHTNMEIF
                     KRAGIYYFYLLVIHIPLFLVWKKVISRIESLDFINTFYFGIAFSLCVFFLLTLPLDGH
                     LALVPLLCVLFSFVFVFKFIYFCFKKISYFTWKKLIFIITTLLGICAGLAYIFFCLYY
                     QLYIFDNYDFLGKFYNIPSYKRPLNFIF"
     gene            complement(4024..>4254)
                     /locus_tag="SB143_001803"
     CDS             complement(4024..>4254)
                     /locus_tag="SB143_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEF9750304.1"
                     /translation="NCIVDAGIAVLEGTKFLLKDREELAKLNPYFDFSKEIYKGIELK
                     GLNGLHFRQDSISGAMIVSLNKKAIKLNEALH"
BASE COUNT         1554 a          544 c          778 g         1378 t
ORIGIN      
        1 aatttttctg aagaattaaa tcaagaaacc ttaaaactca tagattttac aactcaaaaa
       61 tttaaagcta aagaaggctt tacttttcca catatgggat ggaatcaagt tcatagctct
      121 catgctttgt ttaaaggctt agaaggggct tatttttatt ttgtgcatag ttattgtgta
      181 ggacttgggg aatacactat agcagattgt gagtattcgc aaaaatttag cgcaagcgta
      241 atgaaagata atttttacgg ggtgcaattt caccctgaaa gaagcagtga agcgggggaa
      301 attttaattt caaattttat taaggatata ggatgactca aatcataccc gcacttgatc
      361 ttatagatgg cgaagtggta cgtcttgtaa aaggggatta cgaacaaaaa aaagtatata
      421 aatacaatcc cttaaagaaa ttcaaagaat acgaaaaagc aggagcgaaa gaacttcatc
      481 ttgtagatct tacaggtgca aaagatccta gcaaaagaca acttgctttg atagaaaaat
      541 tagctaaaga agtcagtgtc aatttacaag taggtggagg catacgctct aaagaagaag
      601 ttaaagcttt gcttgattgt ggagtaaaaa gagtggttat aggatctatg gcgattaaag
      661 atgcgacttt atgtcttgaa attttaaaag aatttggtag cgaagctata gttttagcct
      721 tagatacgat tttaaaagaa gattatgttg tggctgtaaa tgcttggcaa gaagcaagcg
      781 ataaaaagct tatggaagtt ttagattttt atagcaataa aggcttaaaa cacatacttt
      841 gcacagatat ttcaaaagat ggcaccatgc aaggagtaaa tgtaagactt tacaaactta
      901 tccatgaaat ttttcctcat atttgcattc aggcaagtgg tggagtagcg agcttaaaag
      961 accttgaaaa cttaaaagga atttgtagtg gggttatcgt aggaaaagct ttattagacg
     1021 gagtttttag tgtagaagaa gggataagat gtctagtaaa ttaagctaca aagaacttgc
     1081 tttagaaatt ttaaaacaaa gcgataagcc tttaaatgct aatgaaattt ggcaaaaagc
     1141 tcttgaaaaa ggcttagata aaaagctttc tagtataggg caaactccaa ttgctacttt
     1201 aggagctagg atatatgtgg atataaaaga attacaacac aattctttat ttattaaagc
     1261 ttcccaaaaa cccagaactt tttggttaaa agaaagagaa aatgaacttt taaagcttga
     1321 tgataaaaat gaaattacca atgaaaaaca agaaaaaaat aaatttcatg aaagagattt
     1381 acaccccttg cttgtaaaat ttttatatga aaatttagat tttaatttaa attgcaaaac
     1441 aatttaccac gaacaaagca aaaagggtaa gggcggggaa gataagtgga attatcctga
     1501 tattgtaggg gtttattttc cttacgatga ttatgaaaaa gaaaccataa cacttttaga
     1561 aaatatcaaa caaaatagct ataaactttt ttcttttgaa cttaaaattg ctttaaattt
     1621 ttcaaattta aaagaatgct attttcaagc tgtaagcaat tctagctggg caaatgaggg
     1681 ctatttggtt gttttacaag aaattgatag cgaagtttta agtgagttaa gacgcttaaa
     1741 tcaaagtttt ggcataggag tgataaaact tgaaaaagat atttcaaatt ctcaaatttt
     1801 aattagtgca aaagaaaaag aacttgatat tcaaacacta aatatgctga ttaataaaaa
     1861 tccaaatttt aaagaattta ttgatgatat aaataaacaa attaaagtgg gcaaagaagc
     1921 aaaaattcaa gctaattttg atgaaattaa aagcgatgaa gaaatggaaa aatatcttaa
     1981 agaaaaatgt attttggaga aataaatgct tacaaaacgc ataattgcat gtttagatgt
     2041 caaagatggc agagtagtaa aaggaacaca atttaaaaac cataaagata tgggagatat
     2101 catagaactt gctaggtatt attctcaaaa tggtattgat gagcttgttt tttatgatat
     2161 tactgcaagt gctagaaaag aacgcatttc aagagaatgg gtaagcgaag tggctaaaaa
     2221 tatcaatatc cctttttgtg tagcaggcgg cattaaaagt gaagaagatg cagccgaact
     2281 cttagccaat ggagcggata aaatttctat caattctcct gctttaaatg atccaagttt
     2341 aaccacacgc cttgctaaaa gttttggcgt gcaatgcgtg gtagtaggga ttgatagttt
     2401 caaagatgaa aatggaaatt taaaagtatt tcaatacaca ggcgatgaaa aaacaagcaa
     2461 acatagtgga aaaagcactt tagaatgggt taaagaagtg caagatctag gcgcaggtga
     2521 aattgtttta aatatgatga atcaagatgg tgttaaaaat ggctatgatt tagaacaatt
     2581 agaagctgta tataaaattt gtaaagtacc tttgatcgca agcgggggag cgggaaaaat
     2641 ggagcatttt ttagaagctt ttgaactagg tatagatggg gctttagctg cttctgtttt
     2701 tcatcaaaaa cttatagaca ttaaagaatt aaaaatttat cttaaaaatc aaggcttaag
     2761 tataaggata taatatgcaa aatttcaaag aacttaatga aaaaatcgct tggcaaaaag
     2821 tggatcatct tttacctgtc atcatccaag atgcaaaaac ttgcgaagtt ttaatgctag
     2881 gctttatgaa taatgaagcc ttagaaaaaa gcttagaaag tggcaaagta gtcttttttt
     2941 cacgcacaaa acagcgtctt tggatgaagg gtgaagaaag tggaaatttt ttaaatatcg
     3001 ttgatttaag ccttgattgt gataatgata cacttttgat tttggttgat cctataagag
     3061 ctacttgcca tataggcaat atctcttgct ttgaaaatgt atcaaaaaat gcagattttg
     3121 tctttttagc aagattagaa aaacttataa attcacgtaa aaatgcggat gaaaacactt
     3181 cctatactgc aaagcttttt aaaaaaggaa caaaacgcat cgcacaaaaa gtcggcgaag
     3241 aaggtgtgga aactgcctta gcagcgactg ttaaagataa agatgagctt atttgcgagg
     3301 cggctgattt gatgtatcat ttaagtgttt tactcgcaga tgcaaattta agtttttcag
     3361 atgtcatcgc taagcttaaa gaaagacata aagaataaat tgaaaaatat cattttaggc
     3421 tttttgatct tttttatcta ccctgcatta atgatgtttt tcatcttaat gcatagaaaa
     3481 tatatatctg aagtgccaat gttaggtttt catacaaaca tggaaatttt taaacgagca
     3541 ggtatttatt atttttatct tttagtaatt catatccctt tatttttagt gtggaaaaaa
     3601 gttatttcaa ggatagaaag tttagatttt ataaatactt tttattttgg gattgctttt
     3661 agcctttgtg tgtttttctt gcttaccttg cctttagatg ggcatttagc tttagtgcct
     3721 ttgctatgcg tgttgtttag ttttgtcttt gtttttaaat ttatttattt ttgttttaag
     3781 aaaatttctt attttacttg gaaaaaactt atttttataa taactacatt actaggtatt
     3841 tgtgcaggtt tagcttatat ctttttttgc ctttattatc aactttatat ttttgacaat
     3901 tacgattttt taggtaaatt ttataatatc ccttcttata aaaggccttt gaattttata
     3961 ttttaatgaa aaatatggac aaaaaagcct aaaattaggc ttttgtcgat aatctagggt
     4021 aaattaatgc aaagcttcgt taagcttgat cgctttttta tttaaactta ctatcatcgc
     4081 tccgctgata gaatcttgac ggaaatgaag cccatttaag cctttaagct cgatgccctt
     4141 ataaatctct ttgctaaaat caaaataagg attaagttta gcaagctcct cacgatcttt
     4201 aagtaaaaat ttcgttcctt caagcactgc aattcccgca tctacgatac aatt
//
LOCUS       DARAII010000139         4226 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.141, whole genome shotgun sequence.
ACCESSION   DARAII010000139 DARAII010000000
VERSION     DARAII010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4226
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.141"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..696
                     /locus_tag="SB143_001804"
     CDS             <1..696
                     /locus_tag="SB143_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEF9750305.1"
                     /translation="NKEAKYGVVPIENNTEGAVGVTLDCLGKYNELKIFGEIYMDIHH
                     SFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSNIEFVPSKSTANAAYLASQDKYS
                     AAICSKIAAKLYNVPVLFDKIEDNAANRTRFLILSDIKNPKMPNCKTSILAHTAHKPG
                     GLSSLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVQRALKNADEVVW
                     LGSYLSGEKNEIQ"
     gene            683..1777
                     /locus_tag="SB143_001805"
     CDS             683..1777
                     /locus_tag="SB143_001805"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEF9750306.1"
                     /translation="MKFNDFLNHLSNYEPGKDIEVIAREYGVKEVIKLASNENPFGAP
                     PKAVKVLQENAFKANLYPDDSMVELKGELAQKYNVKNENIIIGAGSDQVIEFAIHSKL
                     NPQNAFLQAGVSFAMYEIYAKQCGAKCYKTQSITHDLSEFKTLYEAHKDEIEIIFLCL
                     PNNPLGECLDTNEVFEFIRGIDENCLVIIDAAYNEFASFKDQNKYLKPCDLVQEFKNV
                     LYLGTFSKLYGLGGLRIGYGIANAEIISAFYKLRAPFNVSNLALKAAVAALHDEEFAK
                     KTLENNFSQMELYKEFAKKHHIKFIESYTNFITYFFEEKNSTDLSEKLLKKGIIVRNL
                     KSYGLNAMRITIGTPYENERFFTEFEGILK"
     gene            1861..3543
                     /gene="fliF"
                     /locus_tag="SB143_001806"
     CDS             1861..3543
                     /gene="fliF"
                     /locus_tag="SB143_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEF9750307.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSGANNGYAVLVDNVDPSSSAAIVAKLEQNNVPYILESESKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQTFGATNEEQRVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAIPKLTKENVRISDQSG
                     VPLDEQEAYEDDLVRAQIKYKSDQERALEDKIIETLAPYAGGTDKVRVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKEPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVVRTSAAVTIDGKYQDVVDENGDVKSEYVPLSKEE
                     LASVESIVKNTINYSANRGDSVVVQNLPFHRESIRVESKVKTFYGRFIEPFIPPVKYI
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEVQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGENFNEDSIQYEVLLEKLRGLVSDKSEEIAALLQNLIQNDTEFGEKDM"
     gene            3543..>4226
                     /gene="fliG"
                     /locus_tag="SB143_001807"
     CDS             3543..>4226
                     /gene="fliG"
                     /locus_tag="SB143_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEF9750308.1"
                     /translation="MIKLSEEQKMLYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRAVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITY"
BASE COUNT         1512 a          599 c          828 g         1287 t
ORIGIN      
        1 aataaagaag caaaatacgg cgttgttcct atagaaaata atacagaagg cgctgtaggt
       61 gtaactttag attgcttagg taagtataat gagcttaaaa tttttggtga aatttatatg
      121 gatattcatc attcttttgt aggaattaat gaaaatttaa aagagataaa acgcatttat
      181 tcccacccac aaggttataa tcaatgtcgc aaatttttag aaagccacga attaagcaat
      241 atagaatttg tgccttcaaa atccacagca aatgctgctt atttagcctc tcaagataag
      301 tactcggctg caatttgttc taaaatagct gcaaagcttt acaatgtgcc tgtacttttt
      361 gataagatag aagataatgc ggcaaatcgt acaagatttt tgattttaag tgatattaaa
      421 aatccaaaaa tgccaaattg caaaacttct attttagctc acactgcaca taagcctggc
      481 ggtcttagtt ctttactgga gcaatttaaa aaagaaaata tcaatcttac taagcttgaa
      541 tctcgtcctg taaaatcaaa agaattttta cacagttttt acatagattt tgaagggcat
      601 attgatgatg aaaatgttca acgcgctttg aaaaacgcag atgaggtagt ttggcttgga
      661 tcttatttat caggagaaaa gaatgaaatt caatgacttt ttaaatcatt taagcaatta
      721 tgagccgggc aaggatattg aagttatcgc tagagaatat ggcgtaaaag aagtgataaa
      781 attagcaagc aatgaaaacc cttttggtgc tccacctaaa gcggttaaag ttttgcaaga
      841 aaatgctttt aaagcaaatc tttatccaga tgatagtatg gtagagctaa aaggtgagtt
      901 agcacaaaaa tacaatgtaa aaaatgaaaa tatcatcatt ggtgcgggca gcgatcaggt
      961 tattgaattt gctatacatt ctaaacttaa ccctcaaaat gcttttttgc aagcaggggt
     1021 aagctttgct atgtatgaaa tttatgctaa gcaatgcggt gcaaaatgct ataaaactca
     1081 aagtatcact catgatttat ctgaatttaa aacactttat gaagcacata aggatgagat
     1141 tgagatcata ttcttatgtt tgcctaacaa tcctttgggc gagtgcttag atacaaacga
     1201 ggtgtttgag tttatacgcg gtattgatga gaattgttta gtgataattg atgcagctta
     1261 taatgaattt gcaagtttta aggatcaaaa taagtatcta aagccttgtg atcttgtgca
     1321 agaatttaaa aatgtgcttt atttaggaac tttttctaaa ctttatggat tgggtgggtt
     1381 gcgtataggt tatggtatag caaatgcaga aattatcagt gcattttata aacttcgtgc
     1441 cccttttaat gtaagcaatt tagcattaaa agcagcggtt gcggctttac atgatgaaga
     1501 atttgctaaa aaaactttgg aaaataattt ttctcaaatg gagctttata aggaatttgc
     1561 caaaaagcat catattaaat ttatcgaaag ctatacaaat tttatcactt atttttttga
     1621 ggaaaaaaat agcacagatt tgtctgaaaa attgcttaaa aagggtataa tagtaagaaa
     1681 tttaaaaagt tatggtttaa atgctatgag aattaccata ggaacgcctt atgaaaatga
     1741 aagatttttt acagaatttg aaggaatttt aaaatagtct tgatttttca aatcaaggat
     1801 aatttttatg gtatttagaa taaaatgggt aagattcact aaactaaggg atgagaatta
     1861 atggatttta aaaatatgct tcaccaaatt ggacagcttt atcaaaattt gactcgaaag
     1921 caacgtatag ttatcgcagc ttctatcgtt gtggttgttg gatttttggt atttttggca
     1981 ctatttcgtg gaagtggcag tggtgctaat aatggctatg ctgttttagt tgataatgtt
     2041 gatccaagtt cttctgcagc tattgtagct aaacttgaac aaaataatgt accttatata
     2101 ctagaaagcg aaagtaaaat tttagttcca caagatcagg tatatcgtca aagaatgttt
     2161 atcgctagcg aaggattgat aaaagatagt cgcgtgggtt ttgaagcttt tgatacgcaa
     2221 acttttggag ctacaaatga agaacaaaga gtaaagtatc aaagagctat agaaggagag
     2281 cttgcaagaa cgattgaaac cctagagcct atacgcagtg cggtagtgca tatagctttt
     2341 ccaaaagata gtgtttttac cgaaagacaa attcctccta cagcttcagt cgttgtaaat
     2401 gtgcgcgagg gattaaaact tactagaaaa caaatcgatg ggattaaaaa tatagtttca
     2461 gctgctattc cgaaattaac caaagaaaat gtaagaatta gtgatcaaag tggtgtgcct
     2521 ttagatgagc aagaagctta tgaagatgat ttggttcgtg ctcaaattaa atataaaagc
     2581 gatcaagaaa gagctttaga agataaaatc atagaaaccc tagctcctta tgcaggaggc
     2641 acagataaag taagggtaag tgtcaatata gattttgact tttctaagca agaatcccaa
     2701 agtgaaattt atgatccaaa ccctatagtt cgaagtgagc aaactcttaa tgaagaaaga
     2761 acaggcagaa aagagcctga aattcaaggt gtgccaggtg cggtttcaaa tataggtcca
     2821 gtagaaggac ttgataataa aggacaaatt gatacctata agaaaaatca agttactaca
     2881 aacaatgagc tttcaaaaac tataacaaat acaaaaaaac aatttgcaac cgttgtgcgt
     2941 acttcagcag cagtaacaat agatggaaaa tatcaagatg ttgtggatga aaatggagat
     3001 gtaaaaagtg aatatgttcc tttaagtaaa gaagagcttg caagtgtaga aagcatagtt
     3061 aaaaatacta ttaattatag tgctaataga ggggatagtg tagtcgtgca gaatttacct
     3121 ttccatcgtg agtctattag agtagaaagc aaggttaaaa ctttctatgg ccgttttatc
     3181 gagccattta tcccaccggt taaatatatt attgcggcta ttttgctttt tattttttac
     3241 aaaaaagtta ttgctccatt tacgcaaaaa atgcttgaag atgttgcagc acaagaggaa
     3301 gtgcagcaag gtccaaatgc tgttttagat gatgctgagg atgcgttaga gaaatttaat
     3361 gcagctagga aaaaggttga agagcagctt ggttttgggg agaatttcaa tgaggattct
     3421 atccaatatg aagttttact tgaaaaatta agaggcttag taagtgataa aagcgaagaa
     3481 attgcagcac ttttgcaaaa cttaatccaa aatgataccg aattcggcga aaaggatatg
     3541 tgatgataaa acttagcgaa gaacaaaaaa tgctttatga tgatttatcg atgcctgaaa
     3601 aggtagcgat atttctcata caacttggcg aggatgcaac gacttcagtt ttttcacata
     3661 tggaaattga tgttattacc gaaatttcac gctatattgc tatggcaaaa aatgttgacc
     3721 gcgctgtagc tactgcggtt ttggaagaat tttataccct gcttcaatct aatcaataca
     3781 ttaaaagcgg tggtttggaa tacgctaaag aaatactttt ccgtactttt ggtccagaaa
     3841 ttgccaataa aattcttgaa aaacttacca aaagtatgga gaataaccaa aactttgctt
     3901 atttggctca gattaaacct caacaacttg ctgacttcat cactaaggaa cacccgcaaa
     3961 ccattgcact tattttagct catatggatt caattcatgc agctgaaacc ttagagtatt
     4021 ttagtgatga gttaagagct gaggttgtta taagaatggc aaatctaggt gatatttctc
     4081 caagtatcat taaaagagtg tctgcagtac ttgaaagcaa actcgaaagt cttacttctt
     4141 ataaggttga agtgggaggc ccaagagcag ttgcagaagt acttaatcgc ttaggacaaa
     4201 aagcaagcaa atctaccatt acttac
//
LOCUS       DARAII010000140         4189 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.142, whole genome shotgun sequence.
ACCESSION   DARAII010000140 DARAII010000000
VERSION     DARAII010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4189)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4189)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4189
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.142"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..402)
                     /locus_tag="SB143_001808"
     CDS             complement(<1..402)
                     /locus_tag="SB143_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEF9750309.1"
                     /translation="MSNLTVININNQEVVFENKDEQVFCTSLDVAKVFGKRHDNVLAD
                     IKLILNDLREIGTSNDLLNFQEVVRISKTTNPKNGKLVSRKMPIYNLTRDGFSLLAMG
                     FTGKKALRFKIAFINAFNEMERIIKNQYTPKL"
     gene            complement(399..2864)
                     /locus_tag="SB143_001809"
     CDS             complement(399..2864)
                     /locus_tag="SB143_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbE"
                     /protein_id="HEF9750310.1"
                     /translation="MLALKEFRSKAKAFPDILNYASFIDEGILLNKDGSLTAGFYYRA
                     GDISCMTINERNTLSARINSVLKTLGNGWAVHIDCSRIKTENYIDGDTFYKSNIAQIL
                     ENERKHYFDNVEHFENLFTMIFTYIPPHKSINKITDLMIIDETKNKNQGDKILEYFKN
                     TLQKLEDSLSNYIKIERMLPRIAIDEYNNEYILDDMLEYINFCICGERQKIILPNAPM
                     FLDCLLGGRHFETGMHPRIDNQYIGIIAIEGFPSESYPNILNALTELNFDYRFNTRFI
                     FLDDFEAQNSLNKYRKKWQQKTKGWLDQLLDRPARKQDDHAVLMVQELDSALSESKSG
                     MIGYGYYTANIVVFDRDYESLEYKLKDIRKVLENLGFLSRTETINSVEAYLGTLPGFV
                     YPNLRRPILNTLNLTHLIPLASIWAGDKYNSSERFPPNSPPLMQVVTSGNTPFRLNLH
                     VSDLGHTLIFGPPGSGKSTLLANIFLAWQKYPNAKIYAFDKGQSLLAPTLATGGIHYD
                     VAGDHSSLAFAPLANIKTDAEIAWAEFWIETCLKLQNVNITPKQKKLIHEALISHINT
                     NSTSLTEFVSALQDSDLRDALNYYTISGTGGFLFDSEEDKLSLSSITTFEIEELMNLG
                     DQYIIPALLYIFNRIEKGLDGSPTLLIIDEAWIALKHPAFKDKIVNWLKVLRKANVAV
                     IMATQSLSDSAKSGILDILQEYCPTKIFLPNPEAYKKGSENVLAPYDFYKIFGLNDVQ
                     ISIINNAIQKREYYYTSPLGTRLFNLALGKTNLAFTTISDKVSVKRVNQLYQQYKENW
                     AYKWLEEKEINYKRFDNSKKEEA"
     gene            complement(2868..3155)
                     /locus_tag="SB143_001810"
     CDS             complement(2868..3155)
                     /locus_tag="SB143_001810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB3 family type IV secretion system protein"
                     /protein_id="HEF9750311.1"
                     /translation="MEELQKIDIYSALNKPNLIFGADRELILMVGVISFALIFTGATL
                     LTSIIGIFLFFFCNMLLRLMAKSDPLMRQIFLRQIKYKKFYYAQSTPFSKD"
     gene            complement(3155..3451)
                     /locus_tag="SB143_001811"
     CDS             complement(3155..3451)
                     /locus_tag="SB143_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HEF9750312.1"
                     /translation="MKKFLILFLALGLGYALASTTGAGLPWEGPLEQIKASLSGPVAF
                     IMSILAIIGAGAGLIWGNEFSGFIKTLFYIVIVIALIVGANSFMSLFSTSGALI"
     gene            complement(3461..>4189)
                     /gene="trbB"
                     /locus_tag="SB143_001812"
     CDS             complement(3461..>4189)
                     /gene="trbB"
                     /locus_tag="SB143_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer ATPase TrbB"
                     /protein_id="HEF9750313.1"
                     /translation="LLDTTTNAENPILECELPLDGSRFEALLPPIVAKPTFTIRKKAV
                     KIFTLDDYVDSNILTPKQKEVLINAIKERQNILVVGGTGSGKTTFSNAIIDGISKITP
                     EHRIVIIEDTAELQCASENKVILRATDKVDMLRLLKATMRLRPDRIIVGETRGKEALD
                     LLKAWNTGHPGGVATIHANSANGGLTRMEQLVSEATSAKMSKLIAEAVNLIVFISKTK
                     EGRKIKEIIKVIDYENDKYITQAI"
BASE COUNT         1276 a          732 c          636 g         1545 t
ORIGIN      
        1 tagttttggt gtgtattgat ttttaataat tctttccatt tcattaaaag cattgatgaa
       61 agcgatttta aaccgcaatg cttttttacc tgtaaagccc atcgctaaaa gagagaatcc
      121 atcacgagta agattatata taggcatttt tctactaaca agcttaccat tctttgggtt
      181 cgttgttttc gatattcgca cgacctcctg aaaattgagg agatcgttgg aagtccctat
      241 ttctcgcaaa tcgttcaaaa tgagtttaat atctgctaat acattatcat gtcttttccc
      301 aaaaacctta gccacatcta aacttgtgca aaaaacttgt tcgtctttgt tttcaaaaac
      361 aacttcttga ttatttatat ttataacagt taggttactc atgcttcctc cttttttgaa
      421 ttatcaaatc ttttgtagtt tatttctttt tcttctaacc atttataagc ccaattctct
      481 ttatattgtt gataaagttg atttactctt ttaacgctta ctttgtcgct tattgttgtg
      541 aaggctaaat tagtttttcc gagtgccaaa ttaaaaagtc tagtgccgag tggagaggtg
      601 taataatatt ctcttttttg aatggcatta ttgataatgc taatttgcac atcgttaagt
      661 ccaaaaattt tataaaagtc gtaaggagct aaaacatttt cacttccttt tttataagct
      721 tcgggattag gtaaaaatat tttagtaggg caatattctt gtagaatatc taaaattcca
      781 ctttttgcac tatcgcttaa gctttgtgta gccattataa cggctacatt tgcttttctt
      841 aaaactttaa gccaattaac tattttatct ttaaacgcag ggtgctttag tgcaatccaa
      901 gcttcatcaa tgatgagtaa tgtaggactt ccatctaagc ctttttctat acgattgaaa
      961 atgtagagta aggcagggat tatgtattga tctcctaaat tcatcaattc ttctatttca
     1021 aatgttgtga tactgcttaa gcttaattta tcttcctcgc tgtcaaataa aaaaccacct
     1081 gttccagaaa ttgtataata atttaaagca tctcttaaat cactatcttg caaagctgat
     1141 acaaattcag tcaaagaggt agaatttgta ttgatatgag aaattaaggc ttcatgtatt
     1201 aatttttttt gttttggtgt aatatttaca ttttgtaatt ttaagcatgt ttcaatccaa
     1261 aattcagccc atgcgatttc ggcatctgtt ttgatatttg ccaaaggagc aaaagccaaa
     1321 gatgaatgat ctcctgctac atcataatga attccacctg ttgccagtgt cggagctagc
     1381 aagctttgtc ctttatcaaa tgcgtaaatt ttagcatttg gatatttttg ccaagcaaga
     1441 aaaatatttg ccaaaagagt agatttacca ctcccaggag gaccgaaaat taaagtgtgt
     1501 cctaaatcgc taacatgtaa atttaacctg aaaggcgtat tgccagaagt tacaacttgc
     1561 attaatgggg gagaatttgg aggaaatctt tcacttgaat tatatttatc ccccgcccaa
     1621 atagacgcca aaggaattaa atgtgttaag ttaagtgtat ttaatattgg acggcgtaaa
     1681 tttggatata cgaatccagg taaagttcct aaatacgctt ctactgaatt gattgtttcg
     1741 gttcttgata gaaagcctaa attttctaaa acttttctta tatcttttaa tttatattct
     1801 aagctctcat aatctctatc aaaaacgaca atatttgcgg tataatagcc atatcctatc
     1861 ataccgcttt ttgattctga taatgcagaa tctagttctt gcaccattaa cacagcatga
     1921 tcatcttgtt ttcttgcagg gcgatctagt aactgatcaa gccaaccttt tgttttttgt
     1981 tgccattttt tacgatattt attaagtgaa ttttgagctt caaagtcgtc taaaaatata
     2041 aatctagtgt tgaatctgta atcgaaatta agctctgtga gtgcatttaa gatatttgga
     2101 taactttcgc ttggaaagcc ctcaatagca ataattccta tatattgatt atcaattctt
     2161 gggtgcattc ctgtttcgaa atgccttcca cccaataaac aatcaagaaa cataggggca
     2221 tttggtagta ttattttttg tctctcacca caaatacaaa aattaatata ttcaagcata
     2281 tcatctaaaa tatactcatt attatattcg tcaatagcta ttcttggtag cattctttcg
     2341 atttttatat aattgcttaa actatcttct aatttttgaa gggtgttttt aaaatactct
     2401 aatattttat caccctgatt tttgtttttt gtttcgtcaa ttatcatcaa atcggtgatt
     2461 ttatttatgc ttttgtgcgg tggaatgtaa gtgaaaatca ttgtaaaaag attttcaaaa
     2521 tgttctacat tgtcaaaata atgttttctt tcattttcaa gaatttgtgc aatattgctt
     2581 ttataaaaag tatcgccatc aatgtagttt tctgttttta tcctggagca atcaatatgc
     2641 accgcccagc cattacctag agtttttaaa acactattaa tcctagcact taaagtgttt
     2701 ctttcattta ttgtcatgca actgatatcc cctgcacgat aataaaaacc agctgttaaa
     2761 cttccgtctt tgttgagcaa aatgccttca tcgataaaac ttgcatagtt tagaatatcg
     2821 ggaaatgctt ttgctttgct tctgaattct ttaagtgcta gcatatttta atcctttgaa
     2881 aatggtgtgc tttgcgcata ataaaatttt ttatatttaa tttggcgcaa aaatatttgt
     2941 ctcataagcg gatcgctttt tgccattaat cttaaaagca tgttgcagaa aaaaaataag
     3001 aatataccta taatgcttgt aaggagcgtt gcacctgtaa agattagtgc aaatgaaatc
     3061 actccaacca taagaataag ctctcgatct gcgccaaata ttaaatttgg tttgttgagg
     3121 gcgctataaa tatctatctt ttgcaattct tccattaaat taatgctcca cttgttgaaa
     3181 aaagcgacat aaagctgttt gcgcctacta ttaatgctat tacaattacg atataaaaga
     3241 gggttttaat aaaaccgcta aattcattgc cccaaattaa acccgctcca gctccaatga
     3301 ttgctagaat tgacataata aaggctacag gaccacttaa gctcgcttta atttgttcta
     3361 atggaccttc ccaaggcaaa cccgctccag ttgttgaggc taaagcatat cctaatccca
     3421 acgccaaaaa taaaattaaa aattttttca tttaaactcc ttaaattgct tgtgtaatgt
     3481 atttgtcatt ttcataatca attactttta tgatttcttt tatttttctg ccctccttag
     3541 tttttgagat aaaaacaatt aaattcacag cttcagcaat taatttgctc atctttgcac
     3601 ttgttgcttc agaaactaat tgttccattc ttgtaagtcc cccattcgca gaattagcat
     3661 ggattgtagc tactcctcca gggtgtcctg tattccaagc ttttaataag tctaaagcct
     3721 ctttccctct tgtttcgcct actataattc tatcgggacg aagtcgcatt gtggctttta
     3781 aaagcctaag catatctact ttatccgtag ctcttaaaat tactttattc tcactcgcac
     3841 attgaagttc tgcagtatct tcaatgatta ctattctatg ctcaggtgtg attttagaaa
     3901 tgccgtcaat aatggcattt gaaaaagtgg ttttaccact accagttccg cccacaacta
     3961 aaatattttg gcgttcttta atagcattga ttaaaacttc tttttgtttt ggtgtaagaa
     4021 tattagaatc tacataatca tcaagagtaa atattttaac ggctttcttt ctgattgtaa
     4081 aggttggttt tgcgacgatt ggtggcaata aagcttcaaa tcttgaacca tcaagtggca
     4141 attcacattc taaaatagga ttttctgcat ttgtggttgt atcaagaag
//
LOCUS       DARAII010000141         4169 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.143, whole genome shotgun sequence.
ACCESSION   DARAII010000141 DARAII010000000
VERSION     DARAII010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4169
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.143"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..366
                     /locus_tag="SB143_001813"
     CDS             <1..366
                     /locus_tag="SB143_001813"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750314.1"
                     /translation="MRIEFRNKDNSYYINGVKIDDEALQSENLNYYLTHRKEHLDFLI
                     CLYADFSKSEDPLYLKDLPLILKNIVKLSRINDKYVFVSNSSSNLITKSLNANKYEAM
                     LKKILSENRIFKAKKLKLF"
     gene            379..840
                     /locus_tag="SB143_001814"
                     /pseudo
     CDS             379..840
                     /locus_tag="SB143_001814"
                     /inference="COORDINATES: protein motif:HMM:TIGR00621.2"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
     gene            874..1209
                     /locus_tag="SB143_001815"
     CDS             874..1209
                     /locus_tag="SB143_001815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750315.1"
                     /translation="MTINQKTAIRINQDFKEKYNQLWRKNCLLRENEKRLEKLKPLEE
                     IFIKVCNTVHNLSWFFYNDLKKQDAYYSYCLKIACKVYSDGFKSEYQLKKMIKQEIKK
                     DIEIRKQSI"
     gene            1382..1786
                     /locus_tag="SB143_001816"
     CDS             1382..1786
                     /locus_tag="SB143_001816"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750316.1"
                     /translation="MNCFKKLKEKIILIKIEKEKASEEKFLKECEIKEAEIRMEILEK
                     RKDDLFNQREELIHSILDEASFNALTEERYLELIKNYHILTEDNKANLYGILRRAYNL
                     NSMVGHLKCLDKSINELEEEKDKQVEILKRKK"
     gene            2020..2268
                     /locus_tag="SB143_001817"
                     /pseudo
     CDS             2020..2268
                     /locus_tag="SB143_001817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815118.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2271..2645
                     /locus_tag="SB143_001818"
                     /pseudo
     CDS             2271..2645
                     /locus_tag="SB143_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843359.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            3148..3228
                     /locus_tag="SB143_001819"
                     /pseudo
     CDS             3148..3228
                     /locus_tag="SB143_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117566.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein CotS"
     gene            3223..3537
                     /locus_tag="SB143_001820"
     CDS             3223..3537
                     /locus_tag="SB143_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="spore coat protein CotS"
                     /protein_id="HEF9750317.1"
                     /translation="MRSSLEKVIKNYSENFSNKRDNDFTQGLIKYLYENDIIGENDKI
                     FLEKNFQYIRVINEKEKRLINVYFCEKPIIDFFQNAEYEKELQYYGINEKDFISLQRS
                     KK"
     gene            3534..3869
                     /locus_tag="SB143_001821"
     CDS             3534..3869
                     /locus_tag="SB143_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750318.1"
                     /translation="MISVTLLFFLFGLNKLMCGFLFNARNTIYKLLSYTKIHAIFINL
                     RTLLFLILVFNADLSYMGTVLFLVDLMTAISIFFAYAQLAYGFSIKDCMFYLVCGKID
                     KEWLKEIQK"
BASE COUNT         1743 a          401 c          683 g         1342 t
ORIGIN      
        1 atgagaattg aatttagaaa taaagataat tcttattata ttaatggggt taagattgat
       61 gatgaagctt tgcagtcaga gaatttaaat tattatctta ctcatagaaa agagcattta
      121 gattttttga tttgtttgta tgcggatttt tcaaaaagtg aagatccgct ttatttaaaa
      181 gatttgcccc taatcttaaa aaatattgtg aaactaagtc gcattaatga taaatatgtt
      241 tttgtgtcaa atagctcgtc taatttgatt acaaaaagtc ttaatgccaa taaatatgaa
      301 gctatgctaa aaaaaatttt aagtgaaaat agaattttta aagcaaaaaa actaaaacta
      361 ttttaaaagg agaataaaaa aatgaaccaa gttaatttat gcggatattt gggaaaagat
      421 tttgagttga aatatactcc aaatggcagt gcttttgcaa agacaacctt agcggtttca
      481 gaaaatagaa gaaacgaaaa aggcgaatat gaaacttaca caagttggat accaattatt
      541 ttgtttgggc gtaaagcaga agttgctaat caatatataa aaaaaggtga tcgtttttta
      601 ggcacaggaa aaatcgttac ttcatcttat acagatcaat atggtaatat ccgttatggt
      661 tggcaagtag tgatctcttc ttttgaattt attgagaaaa aagcagagca aaatcaagat
      721 tataaaggcg aaccaaaacc aagccaaatt acaccaccaa aagaagcaga aactatgcaa
      781 agcatagatg aaaatcaagc tgagatttat atgcaagatg atgaaaattt gcccttttaa
      841 ataaaaaggg cttttaatta aaaaaggaaa aaaatgacaa ttaatcagaa aacagcaatc
      901 aggattaatc aagattttaa agaaaaatac aatcaactat ggagaaaaaa ttgtcttcta
      961 agagaaaacg aaaaaagatt agaaaagtta aaaccactag aagaaatttt tataaaagtt
     1021 tgcaatacag ttcataattt gagttggttt ttttataatg atttaaaaaa gcaagacgct
     1081 tattactctt attgcttaaa aattgcgtgt aaagtttatt ctgatggttt taaaagcgag
     1141 tatcaattaa aaaaaatgat taaacaagaa attaaaaaag atatagaaat ccgaaagcaa
     1201 agtatttaaa aggaaaaaaa tgttttcttt aatttttaat gtagatcaac aaaggaaaag
     1261 aaaatgaata acaaaagaaa agttagggaa tatctgtctt atacggagaa atatctgtct
     1321 tatgtattat ttatttgtat aggttcttgt ttcgttgcat aaaatttaaa ggaaaagaaa
     1381 aatgaattgt tttaaaaagc taaaagaaaa aataatactc ataaaaatag aaaaggaaaa
     1441 agcaagcgaa gaaaaatttt taaaagagtg tgaaatcaaa gaagcggaaa taagaatgga
     1501 aattcttgaa aagcgtaaag atgatttatt taatcaaaga gaagaattaa ttcattctat
     1561 tttagatgaa gcatctttta acgcactaac cgaagagaga tatttagaac taattaagaa
     1621 ttatcacatt ctaacagaag ataataaagc aaatttgtat gggatattaa gaagagctta
     1681 taatcttaat tcgatggtag gacatcttaa gtgccttgat aaaagtatta atgaattaga
     1741 agaagagaag gataaacaag ttgaaatatt aaaaagaaaa aaataaatta aattcacaca
     1801 taaaactttt gcataaaaaa ttttagttag caagaaaaaa aggagttaaa atgctatttt
     1861 ttggagttta tacattattt atatctattt tgttatctat tttgttatct attgaaagtc
     1921 taattccgtc aaaatataat tatgaaaaac aattagttaa tgtgatttta aaacctatac
     1981 ttcttctttt gtatggtgta ggtttgatat ttttgttcta cagaacaaag cattaagatt
     2041 gattttgaaa aaagagaatt tgtaatgcct gattttttta ttataaacga tatagaaatc
     2101 attccttatt ttacgcaagg tggcgaaaaa gaagaagaat taagcaaaga gaaatttttt
     2161 gaacttttaa agcaaaacaa gattaaagaa ttaaactatt tatgtttttt gttttttggc
     2221 ttgttttgtg aagaagagta taaatatttt tgcaaagcaa aggagtaaaa atgaaactaa
     2281 gtgaatttga tttcagggtt tgggacaaag atgaaaaatg ctttttagat ccttacacaa
     2341 aaagcagagc agttgtaaaa aatttaccaa atgaaaaatt attaaattta gaaatagaac
     2401 tttttacagg gctttacgac aaaaacggaa ataagattta tgagggtgat atactgtatt
     2461 cttttgaaga ttgctctgaa gatgaagctt ttaaatacaa agttgttttc aaggaagaag
     2521 ccttctattt ggttgaatgc ggtgataatg gcgaagaata cgatgaagat ttaataagtg
     2581 aatttcggtt aacagaacta gaaattatgg gcaatatcca cgaaaacgcg gagttattga
     2641 aagtcaagga tgatgaagcc gaagagaatg acatattttt caagggaaat atgatagtat
     2701 ggttatttgg aaattactat tctgtttacg aagtagtgaa agcatatgaa gaatcatata
     2761 ttatatcgga tttaatggga agacaaatag aaatcgatcc tcgcgtggca atgaatggtg
     2821 gctataaaga tgccaaagat gatttatttt tatggtattt cgaagtaatg gaaaatgaag
     2881 aaattaaaat atatccaaaa aaattaactt ataatcaaat gctagaagag tgtaagaaaa
     2941 acgatatata cattataaaa ccattatact ctttgggata tacctacaat aataataggg
     3001 aagattttaa gaactacaac taaaataagt caaaaggaat aagtttgaaa aatactatgt
     3061 attcatattt gctcaatgat aaaatcaaaa atcattctat gattttatgc acagaaatcg
     3121 agtgcaaaaa atgcggagaa aagatttatg ttgagtttca gccgaatgaa aaatttattt
     3181 tcaaatgtcc taattgctcg agaaaaaata gaaaggtttt ttatgcgttc tagcttagaa
     3241 aaagtgataa aaaactatag tgaaaatttt tcaaataaaa gagataatga ttttacacag
     3301 ggtttaataa agtatcttta tgaaaatgat atcataggag aaaatgataa aattttttta
     3361 gaaaaaaatt ttcaatatat tagagtaatc aatgaaaaag aaaaaagatt gattaatgtg
     3421 tatttttgcg aaaaaccaat aattgatttt tttcaaaatg cagaatatga aaaagaattg
     3481 caatattatg gaataaatga aaaagatttc ataagccttc aaaggagtaa aaaatgattt
     3541 cagtaacgct tttatttttt ctttttggac taaacaaact aatgtgtgga tttttattta
     3601 atgctagaaa tacaatatac aaactattaa gttacacaaa aattcacgcg atttttatta
     3661 atttaagaac tctacttttt ttaatattgg tatttaatgc ggatctatct tatatgggaa
     3721 cagttttatt tctagttgat ttaatgacag ctatatctat attttttgct tatgctcaat
     3781 tagcttatgg tttctcaatt aaagattgta tgttttatct tgtgtgtgga aaaatagata
     3841 aagaatggtt aaaggagata caaaaatgac tgaagaaaaa ttaattaaaa aagaaatatt
     3901 ttcttatgca atttttatag caattatcgc tttaatttgc atttttaaaa atgaaatttt
     3961 gggcagttta taaaggattt atagaaaatg aattataaaa aatttcaaac aatgagcaaa
     4021 gaagaatatt ttaaaaaata taatgtcgga attaggtttt tgtttgggtg cgatctcaat
     4081 caaaaaaatg aaactgagat gataagtctt agagtttttt tgccaaaaaa gcactttcaa
     4141 gaatacaaaa acattgatat ttttaaaac
//
LOCUS       DARAII010000142         4159 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.144, whole genome shotgun sequence.
ACCESSION   DARAII010000142 DARAII010000000
VERSION     DARAII010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4159
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.144"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1172
                     /locus_tag="SB143_001822"
     CDS             <1..1172
                     /locus_tag="SB143_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEF9750319.1"
                     /translation="TLVLGIISLESLKKVGSIGAKAVIYFEVVSTLALALGIFMANIM
                     QPGHGMNLDPKQLDTTSVQKYISQTTEVSASSEIMHILQDAMPRDIITPFTEGKTMQV
                     LVIAIITALIISLMRIEDRQAIQRVLEVIQNFVFKILQVIMYFSPVAAFSAMAVLIAQ
                     YGLGSLINLAYLLLVMLVSCLIFIFGILGLICYFAKVNIFKFMRFISREVLIVFATSS
                     SESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIFLAQAFNVNLSL
                     AHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATLAQVLPVAAIGV
                     LLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYALDNPEKFHNAGMH"
     gene            complement(1169..1972)
                     /locus_tag="SB143_001823"
     CDS             complement(1169..1972)
                     /locus_tag="SB143_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HEF9750320.1"
                     /translation="MKSILYMLILFFSLLNADELDNALKNNQNKWQKFNYQATQKAPT
                     IKEENIDFKSALNGILSNVLENKNGIDKTDGNLDFQNENVQIKNLNSLYEGENNSLLF
                     QKEFYATQDSYNYSGGLINRYEKDDFLLGINGFIDGQKEQKESKSFGAELGYYQFVKA
                     YSNYYVPNEADENLQFGVSFTIPSYSAFIFDISKDSEKINYQVSYSPYSVLSLKILRR
                     DFSANEAIDDTVLQVGFSFNFNESFVKQLRKKDNALQEVNRYDFLQRVR"
     gene            2116..3642
                     /locus_tag="SB143_001824"
     CDS             2116..3642
                     /locus_tag="SB143_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEF9750321.1"
                     /translation="MQKDNLIAFIIFTISVIAFIIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PEQFDPMLFVAIMLAALLSSGVWIFIATKKGLPVSTTHSIIGGIVGASIMMGLLKFDG
                     SQTLSMVKWSEIVRIAVSWVISPLLGGLVAYIIYSYIDKKILKPSEKLGEELKNLKKE
                     RKKFKENYFLNLKTKSMEEQIKELSAIALEDEGQENSFYKNQIKEFKEKEKNIDIYSV
                     LKTHMPIIACIGAAIIAAMFLFKGLNNVSTLDILQNFWIIGIVGTISYVVTFAIVKIV
                     KKTELNKTTDRLFAWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINANSPV
                     PFAALAMFGVALVIGLWFLGKEVITTVGSKLASIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAVLGIGVYNKNANWMMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGL
                     "
     gene            complement(3645..>4159)
                     /locus_tag="SB143_001825"
     CDS             complement(3645..>4159)
                     /locus_tag="SB143_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEF9750322.1"
                     /translation="LLEDENLKLISIHHLIKDDSACAGFNTAAKLNPPLRSKEDKESL
                     KQALKQGKIDFLSSLHSAKSISLKDLAFDEAAFGIHSVCEFMSLCYTFLIKEDLLTWQ
                     NLCKATSQNPSEFLGLNSGIIEVGKEANLVLFDQNEEISAPKSSLYANDKLFGKVKLH
                     LVKGEKIILN"
BASE COUNT         1356 a          675 c          664 g         1464 t
ORIGIN      
        1 ttaccctagt tttaggtatc attagccttg aaagccttaa aaaagttgga agtataggtg
       61 ctaaagcagt tatttatttt gaagttgtaa gcaccttagc gcttgcttta ggtattttta
      121 tggcaaacat aatgcaacct ggtcacggga tgaatcttga tccaaaacaa cttgatacta
      181 caagcgtgca aaaatacatt tctcaaacaa ctgaagtaag tgcaagttca gagatcatgc
      241 atattttaca agatgctatg ccaagggata tcataactcc ttttaccgag ggcaaaacta
      301 tgcaagtttt agttattgct atcattacag ctcttattat ttctttaatg agaatagaag
      361 atagacaagc tattcaaaga gttcttgaag taattcaaaa ctttgtcttt aaaattttac
      421 aagttatcat gtattttagt ccagttgctg ctttttcggc tatggcggta cttatagccc
      481 aatacggttt aggctcttta attaatcttg catatttatt actagttatg cttgtatcat
      541 gtcttatttt tatttttgga attttaggtt taatttgtta ttttgcaaaa gtcaatatat
      601 ttaaatttat gcgctttatt tctagagaag tacttatagt atttgcaaca agctctagcg
      661 aatccgctct tgctcctttg atgagaaaac ttgaaaaagc aggtctttct aaggccactg
      721 tcggacttgt tttaccaaca ggttatagtt ttaatcttga ttgtaccaat atatacctag
      781 ctatgagttt gattttctta gctcaagctt tcaatgtaaa tttaagctta gctcatgaaa
      841 taagtattct aatagtcttg atgatagctt caaaaggtgc agtaggtgtt acaggatcag
      901 gatttattgt tcttggaagt actctagccg ctttaggcaa tatggaaatt tctgaagcaa
      961 atgcaacttt agcacaagtt ttacctgtag ctgcgatagg agttctttta ggggttgata
     1021 aatttatgtc agaaatgaga gcggttggaa atctttgtgg aaattcagtt gcagctttaa
     1081 tcgtagcaat atgggataag caaattgact gggaaaaatt ccgctacgct ctagataatc
     1141 cagaaaaatt ccacaatgct ggtatgcatt aacgcaccct ttgcaagaag tcataacgat
     1201 taacttcttg caaggcatta tccttttttc taagttgctt cacaaagctc tcattaaaat
     1261 tgaaactaaa acccacctgc aaaacagtat cgtcaatagc ttcatttgca ctaaaatcac
     1321 ggcgtaatat ttttaaactc aaaacactat agggcgaata cgacacttga taatttatct
     1381 tctcactatc cttgctgata tcaaagataa aagcactata agatggtata gtaaaactta
     1441 ctccaaactg caaattttca tctgcttcat ttggaacata ataattacta taagctttta
     1501 caaattgata ataacccaat tcagctccaa agcttttact ttctttttgc tctttttgcc
     1561 catcaataaa gccatttata cccaataaaa aatcatcttt ctcataacga ttgattaaac
     1621 cacctgaata attataacta tcttgtgtag cataaaattc tttttgaaaa agcaaagaat
     1681 tattctcccc ctcataaagc gagtttaaat ttttaatttg cacattttca ttttgaaaat
     1741 ctaaatttcc atccgtttta tcaataccat ttttattttc taatacatta gataatatac
     1801 catttaaagc acttttaaaa tcaatatttt cttcctttat tgtcggtgct ttttgggtag
     1861 cttgataatt aaatttttgc catttatttt gattattttt taaggcatta tctaactcat
     1921 cggcatttag caaagagaaa aaaagtataa gcatatataa aatacttttc atcacttttc
     1981 ctaaaattat aatttattta tttttcatta taaaaaatta aaataaataa aaattagcta
     2041 cagagaataa gagctctaaa atttgcaaat tcaggattat aagggtataa ttaaagttaa
     2101 aaaaggctta actttatgca aaaagataat cttatcgcat ttatcatctt taccattagc
     2161 gtaatcgcat ttatcatttg gggatttggc tatatctccc agcaccaact catactcttt
     2221 atactcgctt ccatttttgg catatttatg gcatttaaca taggcggaaa tgatgtagca
     2281 aattcttttg gtactagtgt gggagctaaa accgtaacca taaaacaagc tttgatcata
     2341 gcagctgttt ttgaactcag cggtgctatt tttgcagggg ctgaagtaac caaaactata
     2401 cgcagtggaa tagttatatt tcctgaacaa tttgatccta tgctttttgt tgctatcatg
     2461 ctagccgctc ttttaagctc gggtgtttgg atttttatcg ccacaaaaaa aggcttgcct
     2521 gtatctacta cacatagtat cattggtggt atagttggag ctagtatcat gatggggctt
     2581 ttaaaatttg atggatcaca aaccttatcc atggttaaat ggagcgaaat agtaaggatt
     2641 gctgtatctt gggtgatttc acctctttta ggaggacttg tagcttatat catctactct
     2701 tatatagata aaaaaatact caaaccctca gagaaacttg gcgaagaatt aaaaaattta
     2761 aaaaaagaaa gaaagaaatt taaagaaaat tattttttaa atcttaaaac caaaagtatg
     2821 gaagagcaaa tcaaagaact ctcagccata gccttagagg atgaaggaca agaaaatagc
     2881 ttctataaaa atcaaatcaa agaatttaaa gaaaaagaaa aaaatataga tatttattct
     2941 gttttaaaaa cacatatgcc tattatcgct tgcattggag ctgctataat tgctgctatg
     3001 tttttattta aaggtttaaa taatgttagc actttagata ttttgcaaaa tttttggatt
     3061 ataggaattg taggaaccat aagctatgtt gtaacctttg ccatagtaaa gattgttaaa
     3121 aaaaccgaat taaacaaaac gaccgataga ctttttgctt ggtttcaaat ttttaccgct
     3181 tctagttttg ctttctctca tggggctaat gatatagcta atgctattgg cccttttgct
     3241 gcgattttag atgttcttaa aaacggtact atcaatgcaa attctcccgt accttttgct
     3301 gctctagcta tgtttggagt cgctttggtt ataggacttt ggtttttagg aaaagaagta
     3361 attaccactg tgggttctaa gctagcttct atacgcccta ccacaggatt tagtgcagaa
     3421 cttggagcaa gtatagtcat acttttagca actcaatttg gaattccagt aagctcaaca
     3481 catattttaa tcggtgcagt tttgggtata ggggtatata ataaaaatgc aaattggatg
     3541 atgatgaaac ctataggttt agcttggatt attactttgc cagccgctgg gataatggca
     3601 gcacttgtat tcctaggatt taaattaagc ttaggacttt aagcttaatt taaaattatt
     3661 ttttcaccct ttacaagatg taatttaacc tttccaaaaa gtttgtcatt tgcataaagt
     3721 gagctttttg gagcagaaat ttcttcattt tgatcaaaaa gaaccaaatt tgcttcctta
     3781 ccaacttcta taattccact atttaaacct aaaaattcac ttggattttg gcttgttgct
     3841 ttgcaaagat tttgccaagt tagaagatct tctttgataa gaaaagtata acaaaggctc
     3901 ataaattcac atacactatg aataccaaaa gccgcctcat caaaagctag atcttttaaa
     3961 gaaatagact ttgcgctatg taaagaactt aagaagtcta tctttccttg ttttaaagct
     4021 tgtttcaaac tttctttatc ttctttgctt cttaaaggag ggttgagttt tgctgctgta
     4081 ttaaatccag cacatgcact atcatctttg attaaatgat gtatgctgat aagttttaaa
     4141 ttttcatcct ctaaaagct
//
LOCUS       DARAII010000143         4129 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.145, whole genome shotgun sequence.
ACCESSION   DARAII010000143 DARAII010000000
VERSION     DARAII010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4129
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.145"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1043)
                     /locus_tag="SB143_001826"
     CDS             complement(<1..1043)
                     /locus_tag="SB143_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEF9750323.1"
                     /translation="MKFEAIDEKEFLNPYYRKKPILEAELNEFIKALKDYKTSLENNL
                     KNNEDSLVANALSKFFENLHFECEIKSIHQGNSGIDLALKKDKQIQVIIEAKLPHSKE
                     FFSQSKPNCKALHECILYYLRERKALNSSLKHIIITDFYRFYIFKADLFEELFNKNKY
                     FKEAFENFESKNSLFKGNTDEFYKECEKLLSSEKYLDSITRKDLFDEPSLKGVFIDLK
                     PILEQEKPSFSKLKPVFKIFHKDFLLSEFNPNDANSLNNAFYKELLYILGLCESKQNS
                     KLIIAKSQESEEEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFN
                     DDKNLKFLNFKKIP"
     gene            1158..3947
                     /locus_tag="SB143_001827"
     CDS             1158..3947
                     /locus_tag="SB143_001827"
                     /inference="COORDINATES: protein
                     motif:HMM:NF024486.1,HMM:NF024487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750324.1"
                     /translation="MSSNIDILKYLLFVEYLTPQNIKKINNCCDTCETSYINQYIREK
                     IEKICNALTLNNKNLDDYSVEIIIQGAIYNNKTLFENIINKFNINKDLENFYDNLNTE
                     YASFVLKFNGRLNFTNENEIIKFNEFNSNNHQNFDPIIDNDFVFNAKNFYLSTAPWAI
                     NNIENIKSSYIDFINLSQNIAKELSSLKNICIDKFYNKAIKIIERDVPLLGNKFRISV
                     NLTKTMNENVFLNSFYIQELANILNNYEENKFPMIDKYLSNKIKQRIDIKTNQLEILE
                     NYIDELAPSSFVSQFALMYSQQFAVNKILKMNKDHNDIYSINGPPGTGKTTLVKDIIA
                     GIITQRAIEISKLNYDEIIKKEDGIYKLNEKLKGYEIILSSSNNNAVENISKEIPTNN
                     GIDSSYIQDLDYFSEIATRFLNQNKKTEVKAWGLICGILGNNSNKSSFIYNVLKDFKS
                     KEYEFIGLINYIKNNKLTDKDFEQAKNDFNQALRRVNNLLDKNKKEKHIIQKVKIYNK
                     LKNDSSLINTITYLYKILSYRLMGKSYVKNIKKHISFLNQKFYLHDEASMEKSSFFMV
                     ENGETTELSKARKDLFVKALNLHKVAILSNNLYFAQNLEVLSDILENNNYRNLSENKI
                     VEIWKSLFFIIPSISSTYASFGSCFKDIGHNQFGYLISDESGQSTITSAIGAIYRTKK
                     AIIIGDPLQLEPIVNIPNNINNFFTQYFNIDKAFDVKNTSLQSRCDFLQSYGRYIYQD
                     SQKIWLGSPLRVHNRCDRPIFELSNKIAYGGMMIYGKKNENTLQLQNTWYNIKEEQWN
                     GNCNEREIEYLHILLDEITQYDLEIGIITPFVDVKQKLKDIANKYNNLKDDKIGTIHT
                     MQGKEADIIILILGGNNENARNWVASRPNLINVALTRAKNTIFIIGNKEKYIKLNYFN
                     HLESMHTITPSFSNL"
BASE COUNT         1617 a          589 c          554 g         1369 t
ORIGIN      
        1 gggatttttt tgaaatttaa aaatttcaaa tttttatcat cattaaaacg caccaaattc
       61 gactctataa gctttaaaaa caagatacga ttaagccata aaatcaaaag ttttaaaatg
      121 gtttcaaaat tttcttcttt gagcttagag tttatagcgg tgtagaaggt gccttgctct
      181 tcttcgctct cttggctttt tgcgatgatg agctttgagt tttgcttgct ttcgcaaagc
      241 cctaagatat ataaaagctc tttgtaaaag gcgttattga gcgaatttgc atcgttgggg
      301 ttaaactcgc ttagtaaaaa gtctttgtga aaaattttaa acacaggctt gagcttacta
      361 aagcttggct tttcttgctc taaaataggc tttaagtcga taaaaacacc ctttaagcta
      421 ggctcatcaa acaaatcctt tcttgtgata gaatcaaggt atttttcact gcttaaaagc
      481 ttttcacact ctttgtaaaa ttcatcggta ttgcccttga aaagagaatt tttgctttca
      541 aaattttcaa aagcttcttt aaaatacttg tttttgttaa aaagctcttc aaacaaatcc
      601 gccttaaaga tataaaaacg ataaaaatcc gtgatgatga tgtgcttgag tgatgaattt
      661 aaagcctttc tttcacgaag ataatacaaa atgcactcgt gcaaagcctt gcagttgggc
      721 ttgctttgac taaagaattc tttagaatgg ggcaattttg cttcaatgat gacttgaatt
      781 tgcttgtctt ttttcaaagc aagatctata ccgctgttgc cttgatgtat gctttttatc
      841 tcacactcaa aatgcaaatt ttcaaaaaat ttgcttaaag cgtttgctac tagggagtct
      901 tcgttgtttt tgaggttgtt ttctaagctt gttttataat ctttcaaagc tttaataaat
      961 tcgtttaact ctgcttctaa aatcggcttt ttgcggtagt aaggatttaa aaattctttt
     1021 tcatctatgg cttcaaattt catcttgcac ctttttttaa aatagtttct attttatcaa
     1081 aattttactt taagaaaatg gaaatttgta aaaacatgtt aagatatagt ttatatattt
     1141 ttatttaagg atttaacttg agtagcaata ttgatatttt aaaatattta ctttttgtgg
     1201 aatatttaac acctcaaaat atcaaaaaga taaacaattg ttgcgataca tgcgaaactt
     1261 catatattaa ccaatatatt cgagaaaaga ttgaaaaaat ttgcaatgcc ttaaccttaa
     1321 ataacaaaaa tttagatgat tatagtgtag aaattatcat acaaggtgcc atctataaca
     1381 ataaaacctt atttgaaaat attataaata aatttaatat taacaaagac ttggaaaatt
     1441 tttacgataa tttaaataca gaatatgcat cttttgttct aaaatttaat ggtcgtttaa
     1501 attttacaaa tgaaaatgaa attataaaat tcaatgaatt taactcaaac aatcatcaaa
     1561 atttcgatcc aataatagat aatgattttg tttttaatgc gaaaaatttt tatttatcca
     1621 ctgcaccatg ggctataaat aatattgaaa atataaaatc atcttatatt gattttatta
     1681 atctaagcca aaacattgcc aaggaactgt cttcgcttaa aaatatatgt attgataaat
     1741 tttacaataa agctatcaaa atcatagaac gcgatgttcc attacttgga aacaaattta
     1801 gaatatcagt taatcttact aaaactatga atgaaaatgt atttctaaat agtttttata
     1861 tacaagaatt agcgaatatt ttaaataatt atgaagaaaa caaatttccc atgatagata
     1921 agtatctaag caataaaata aaacaacgta tagatataaa aacaaatcaa ttagaaattt
     1981 tggaaaacta tattgatgaa ttggctccta gctcttttgt aagtcaattt gcattgatgt
     2041 attctcaaca atttgcagta aacaaaatac ttaaaatgaa taaagatcat aacgatatct
     2101 actctatcaa tggacctcca gggactggaa aaacaacgct tgtaaaagat atcatagcag
     2161 gtattattac tcaaagggct atagaaattt caaaactaaa ttatgatgaa attataaaaa
     2221 aagaggatgg aatttataag ctaaatgaaa agctaaaagg ttatgagatc atactatctt
     2281 ctagtaacaa taatgctgta gaaaatataa gcaaagaaat acctacaaat aatggtatcg
     2341 atagtagcta tattcaagat cttgattatt ttagtgagat agctacaaga tttttaaacc
     2401 aaaataaaaa aactgaagtt aaagcttggg gattgatatg tggtatattg ggtaataact
     2461 ccaataaatc ttcttttata tacaatgttt taaaagattt taaatcaaaa gaatatgaat
     2521 ttatcggtct tataaattat ataaaaaaca ataaactcac cgacaaagat tttgagcaag
     2581 caaaaaatga tttcaatcaa gcattgcgta gagttaataa tctgctagat aaaaacaaaa
     2641 aagaaaaaca tataatccaa aaagtaaaaa tttacaacaa actaaaaaat gatagcagtt
     2701 taatcaatac tattacttac ctatacaaaa tactttcata tagacttatg ggaaaaagtt
     2761 atgtaaaaaa tataaaaaag catatctctt ttctcaacca aaaattttat ttacatgatg
     2821 aagcgtctat ggaaaaatct tcatttttta tggtagaaaa tggcgaaaca acagaacttt
     2881 ctaaagcacg aaaagactta tttgtaaaag cacttaatct tcacaaagta gccatactaa
     2941 gtaataatct atattttgct caaaatttag aagtattaag tgatatttta gaaaacaaca
     3001 actataggaa tctttcggaa aataaaattg ttgaaatatg gaaaagttta ttttttataa
     3061 taccatcgat tagttccact tatgcttctt ttggctcttg ttttaaagat ataggacata
     3121 atcaatttgg atatctaatc agcgatgaat caggacaaag cactataaca agtgccattg
     3181 gggctatata cagaacaaaa aaagccatca taataggaga tccactacag cttgaaccta
     3241 ttgtaaatat tccaaacaat ataaataatt tttttacaca atacttcaat atagataaag
     3301 cttttgatgt taaaaatact tctttacaaa gtagatgcga cttcttgcaa tcatatggaa
     3361 gatatattta tcaagacagt caaaaaatat ggttaggctc tcccttgcgt gtgcataatc
     3421 gctgcgaccg acctatattt gaactatcta ataaaatcgc atatggcggt atgatgatat
     3481 atggaaagaa aaatgaaaac accctacaat tacaaaacac ttggtacaat atcaaagaag
     3541 aacaatggaa tggtaattgc aatgaaaggg aaatagaata tttacacata cttttagatg
     3601 aaattactca atatgatcta gagattggaa tcattacgcc atttgtagat gttaaacaaa
     3661 aattaaaaga tatagccaat aaatataata atttaaaaga tgataaaatt ggtactatac
     3721 atacaatgca aggaaaagaa gcagatataa tcatacttat cttaggtgga aataacgaaa
     3781 atgctagaaa ttgggtagca tctaggccaa atttaatcaa tgttgcatta actcgagcaa
     3841 aaaatacaat cttcattata ggcaataaag aaaaatacat aaaacttaat tattttaatc
     3901 atttagaaag catgcatacg attacacctt cattctccaa tctttaatca ttacttggct
     3961 ttaacaatct caaatatctc attcttttat cttgtaaaca tagtttcaaa ccctatatct
     4021 ttacaaaaac caaccaattc tcactatcta atcccaccca aacccaaaca agccataaat
     4081 tacacacact tttttacaaa catcaattaa atagcaagac tatcgatga
//
LOCUS       DARAII010000144         4088 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.146, whole genome shotgun sequence.
ACCESSION   DARAII010000144 DARAII010000000
VERSION     DARAII010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4088)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4088)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4088
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.146"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            95..367
                     /locus_tag="SB143_001828"
     CDS             95..367
                     /locus_tag="SB143_001828"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750325.1"
                     /translation="MTQQIDFAKYQKMNERQKFNALLKEKKDIENLKEKIKFKKSVIG
                     YLQGELNFFLEQEFNDELKEAIEEIKNGGGTLCKSMEEFKAKMAED"
     gene            367..636
                     /locus_tag="SB143_001829"
     CDS             367..636
                     /locus_tag="SB143_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
                     /protein_id="HEF9750326.1"
                     /translation="MKYEIKYSTKFKKHYKKLNTKERQNADIIINRIANNETLEAKHR
                     DHALKGNYIGFRECHIQQDLLLVYQKQDDKLILYLLRIGSHSELF"
     gene            636..1829
                     /locus_tag="SB143_001830"
     CDS             636..1829
                     /locus_tag="SB143_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="HEF9750327.1"
                     /translation="MGAISSINFKKSNAIQTMHNDRELPPNYLIGGSCECNKSSIQAL
                     KLKEKIIQEAKEAYNNNKSAKAPSFKAKSYEWSAVVNIKLDTTMQDLERLALFLNEKY
                     GFQCYQIAIHRDEGHINEQGQKEINHHAHLEFITLNKENGRNMWRRELITPKVLRQMQ
                     SEVAEILRMERGEDKRISGAKRIEPRAYAVLKEKEKREKKKNINLEQEQEKEQFLNKS
                     EYKKIIEDFRKSQINQGLDKDFFKELSELKKNFQEIKEDNLSELLNDILREHLERIEK
                     LKKENSILKAENELLKQKEQKNDKSQGLFEFIENLAIFRLNEALNKIYSKPLKKILEA
                     ETEVKKKERVKILTETMEKTKTHIPETFEKWIENNKDFDLKEILMTYQNSPSKELKQS
                     IYKGR"
     gene            2415..3443
                     /locus_tag="SB143_001831"
     CDS             2415..3443
                     /locus_tag="SB143_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HEF9750328.1"
                     /translation="MSEIVKYNNDFNLLPMPELKAIQMDMFMAIISLTKDKKENTPFL
                     KKFFNPDKRKIIIPQKNFIELCRLNDSKMDYKEIFFAIDDCLKKLCNFLVSYQKDERT
                     IYNFVCFEEASIIADEVHITLQSRFYDMIINKKFGFTAFELAEFAELSGKYAKTLYRL
                     LKQFRTTGKAYFEWEEFCRVMKIPQDYRQSEIDKRILKPAIKELSKERNLFDQVRVPF
                     KNLAYEKEKAKGRGQGGKVSGITFTFKPESVLMQKLENESQKIMSDEQKYLKILNNMK
                     LNQVRFNYNDKLWQFNDFDFDEFKIIAVELIRDEYENLNFGNHMHFNAKNQEQFFKMI
                     DTFRNGIR"
     gene            3509..3775
                     /locus_tag="SB143_001832"
     CDS             3509..3775
                     /locus_tag="SB143_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002957415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750329.1"
                     /translation="MTPSFIVDHIQDKDFAKTIFSAIFQNSLTMFEDLKIIDNEEWIK
                     EFIISQNQRLGYHKRFYYEERLDELIAHYGIKDAGKRREVYFIT"
     gene            3771..3848
                     /locus_tag="SB143_001833"
                     /pseudo
     CDS             3771..3848
                     /locus_tag="SB143_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846383.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         1683 a          543 c          685 g         1177 t
ORIGIN      
        1 aaaaaaaaca agttttattt ttttggtaat ttgttttaaa aaatatgata taatttcaca
       61 agttcaatta catatttttt aaaaggatta atcaatgaca caacaaattg attttgcaaa
      121 atatcaaaaa atgaatgaga gacaaaagtt taatgcactg ctaaaagaaa aaaaagatat
      181 tgaaaatttg aaagaaaaaa ttaaatttaa aaaaagcgta ataggctatt tacaaggaga
      241 attaaatttt ttcttagagc aagaatttaa cgatgaatta aaagaagcga tagaagaaat
      301 aaaaaatggt ggtggaacac tttgtaaatc aatggaagaa tttaaagcaa aaatggcaga
      361 agattaatga aatatgaaat taaatactct acgaagttta aaaagcatta caaaaagcta
      421 aacaccaaag aacgacaaaa cgcggatata atcattaatc gcattgcaaa taatgagact
      481 ttagaagcaa aacatagaga ccacgcacta aaaggaaatt atattggctt tagagagtgc
      541 catatacaac aagacttact tttagtttat caaaagcaag acgataaatt aattctttat
      601 ctgcttagaa taggttcaca tagcgagtta ttttaatggg tgctatctct agcattaact
      661 ttaaaaaaag caatgctatt caaacaatgc ataatgatag agaattaccg cctaattatt
      721 taatcggtgg aagttgtgag tgcaataaaa gcagtattca agccctaaaa cttaaagaaa
      781 aaatcataca agaagcaaaa gaagcttaca acaacaataa aagtgcaaaa gcaccaagct
      841 ttaaagcaaa aagttatgaa tggagtgcgg ttgttaatat aaagcttgat accacaatgc
      901 aagatcttga aagacttgca ttgtttttaa atgaaaaata tggctttcaa tgctatcaaa
      961 tagctataca cagagatgaa gggcatataa acgagcaagg acaaaaagaa atcaatcatc
     1021 acgcacattt agaatttatt acgctcaata aagaaaatgg gcgtaatatg tggcgtagag
     1081 aactcattac accaaaagtt ttaagacaaa tgcaaagcga agtcgccgaa atcttaagaa
     1141 tggagcgtgg cgaagataag agaataagcg gagcaaaacg catagagcct agagcttatg
     1201 cagtcttaaa agaaaaggaa aaaagggaga aaaagaaaaa tattaattta gagcaagagc
     1261 aggaaaaaga gcaattttta aataaaagcg agtataaaaa aatcatagaa gattttagaa
     1321 aaagtcaaat taatcaagga cttgataaag attttttcaa ggagctaagc gaacttaaaa
     1381 agaatttcca agaaatcaaa gaagacaatc tatccgaact tttaaacgat attttaagag
     1441 agcatttaga acgcattgaa aagttaaaaa aagagaatag cattttaaaa gccgaaaatg
     1501 agcttttaaa gcaaaaagag caaaaaaacg ataaatcaca agggcttttt gaatttattg
     1561 aaaatttagc catttttaga ctaaatgaag cattaaataa aatttattct aaacctttga
     1621 aaaaaatttt agaagcagaa actgaagtta aaaagaaaga aagagttaaa attttaacag
     1681 aaacaatgga aaaaacaaaa actcacatac ccgaaacttt tgaaaaatgg attgagaata
     1741 acaaagactt tgatttaaaa gaaatactta tgacttatca aaatagccct agcaaagaat
     1801 taaaacaaag catttataaa ggcagatgat acttactttc tcccttttag cttagcaaat
     1861 cgcacctgtt aaggtgctat gatttgcgaa aagggggtgc gggggctgtc tgagtgcgta
     1921 gcacggaaga cggacaaagc ccaccgccct agaaaaaaaa ttactcaact ttttttgttt
     1981 tttctctcgc gcgcgtacgc gtacgcgatt ttttttattt tttatatatt tttcttattt
     2041 ttagggggct ttctaaagac tatatgatag gggctagcga aatattaagg ggacaaaatt
     2101 ctactattaa ggggacaaaa ttctactatt aaggggacaa aattctacta ttaaggggac
     2161 aaaattctac tattaagggg acaaaatata ttgacaatag tcaccttaat atgctacaat
     2221 aaaaaatccg ccttgagttt tcactcttgg cggaaattta tcaatcaagg ctaactatga
     2281 aacgacatag taagcgtttt gtgagattat acctaaattt taggtttttt aagcttaaag
     2341 ttgaagtatt tttctaacaa aaccgcaggg gcagagaagc cccttgcctt gattgtctta
     2401 ctttggatat gcaaatgagc gaaatagtta agtataataa tgattttaat cttttaccta
     2461 tgcctgaact caaagccata caaatggata tgtttatggc tattatctca ctaaccaaag
     2521 acaaaaaaga aaatacgccg tttttaaaaa agttttttaa ccccgataaa agaaaaataa
     2581 ttattccaca aaaaaatttt attgaattgt gtcggttaaa cgatagcaaa atggactata
     2641 aagaaatttt ctttgccatt gatgattgct taaaaaaact ttgcaatttt cttgtttcat
     2701 accaaaaaga tgaaagaacg atttataatt ttgtttgttt tgaagaagca agcattattg
     2761 ctgatgaagt gcatataact ttacaaagtc gtttttacga tatgataata aataaaaaat
     2821 ttggttttac agcctttgaa ttagcagaat ttgcagaact tagcggtaaa tatgctaaaa
     2881 cactttatag gcttttaaaa caatttagaa ccacaggcaa agcttatttt gagtgggaag
     2941 aattttgcag ggttatgaag ataccacaag attatagaca aagcgaaatc gataaacgaa
     3001 ttttaaaacc tgccataaaa gaactttcta aagaacgcaa tctttttgat caagtgcgag
     3061 tgccttttaa aaatcttgcc tatgaaaaag aaaaagcaaa agggcggggg caaggtggca
     3121 aggtttcagg tattaccttt acttttaaac ctgaaagcgt tttaatgcaa aagctagaaa
     3181 atgaaagcca aaaaataatg agcgatgagc aaaaatattt aaaaatttta aacaatatga
     3241 aacttaatca agttagattt aattataatg acaagctttg gcaatttaac gattttgatt
     3301 ttgatgaatt taaaattatt gcagtagagc ttataagaga tgagtatgag aatttaaact
     3361 ttggaaatca tatgcacttt aatgctaaaa atcaagagca gttttttaaa atgattgata
     3421 cctttagaaa tgggattaga tgagcgaaaa tacaaaactt caaatcgcag aacacatttt
     3481 acgcaattgc tattggggaa atactactat gaccccgagt tttatagtcg atcatataca
     3541 agacaaagac tttgcaaaaa caatttttag tgccattttt caaaattcac tcacaatgtt
     3601 tgaagattta aagattatcg ataatgaaga atggataaaa gaatttatca tttctcaaaa
     3661 ccaaagatta ggctatcaca aaagatttta ttatgaagaa aggcttgacg agcttatcgc
     3721 acattatggg ataaaagatg caggaaaaag aagagaagta tatttcatta cctagctcta
     3781 aaacttgtag ttgttgtgga tatatcaaag atgatttaaa tttaaaagat agaatatttg
     3841 aatgtcctaa atacaataag caaggaattt aatatccccg ctctaagacg gggcaactta
     3901 tctaaaagat aagctaattc ttcgctaaac tttcatttag gaagtcaaac aaaattctat
     3961 cataaataat tttatttaat actttttcat taaatgagct tgcgaattaa tgcaaagcca
     4021 cgcagtgcaa attattaatc atttttttgt taaaaaatat gattggataa tttgcaaatt
     4081 atccaaac
//
LOCUS       DARAII010000145         4070 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.147, whole genome shotgun sequence.
ACCESSION   DARAII010000145 DARAII010000000
VERSION     DARAII010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4070
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.147"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..982
                     /locus_tag="SB143_001834"
     CDS             <1..982
                     /locus_tag="SB143_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEF9750330.1"
                     /translation="IYAVYRYYVRFLKPKSEFKTIGDDAFRENNSSKKLLVLVVGETA
                     RAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSLSKRQNYSSSEY
                     QENVMDILQKTGVKASWIDNNSGGCKGVCDRLSDKQQLSSDWDENLLPFLKERLGNLD
                     TQNIIVLHLQGSHGPAYYKRYPNEFKKFIPTCDTNELSKCDSEALINTYDNTLLYTDY
                     LLSEIIKLLKEKKDYESSLIYLSDHGESLGENGIYLHGMPYAIAPSYQTHIPVIFWSN
                     DKKLMMTAQNHKGLKLSQDNLFSTLLGYFDVKTMVYESDYDLLNQTLKAN"
     gene            982..1338
                     /locus_tag="SB143_001835"
     CDS             982..1338
                     /locus_tag="SB143_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEF9750331.1"
                     /translation="MKPKYHLLNNARYALEGILALLKNEMAFRLELCVIIPAIVFSFF
                     LDVSFLEHLFLITVLILILITEALNSAIEACVDLITNEWHEKAKVAKDCASAAVFFSV
                     CLALFIWGFILGKLWL"
     gene            1329..1571
                     /locus_tag="SB143_001836"
     CDS             1329..1571
                     /locus_tag="SB143_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEF9750332.1"
                     /translation="MAVKIENLMREILGKKRFELLQFLCENADENGFVMIKISELEAR
                     LNQSKPTIIATFKFLEEKKLFKKLKNGFYQLCIPCD"
     gene            1673..2677
                     /gene="pyrC"
                     /locus_tag="SB143_001837"
     CDS             1673..2677
                     /gene="pyrC"
                     /locus_tag="SB143_001837"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEF9750333.1"
                     /translation="MTLKNPLDMHLHLRDKNMLSLVAPFSAKDFRAGVIMPNLVPPLC
                     DLESLKSYKTRIINACENENFTPLMTLFFKNYDEKFLKSAKDEIFGIKLYPAGITTNS
                     KGGVSSFDIENLKPTLEAMSDLQIPLLVHGETNDFVMDRESNFAKIYENLAKNFPRLK
                     IVMEHITTQTLCELLKDYENLYATITLHHLIITLDDVIGGKMQPHLFCKPIAKHYKDK
                     EALCELAFGGYEKVMFGSDSAPHPKHEKECCGCAAGVFSASVALCVLADLFSKNSNEV
                     NLQKFISDNACKVHNLTFEKEKIIVLENQEWQVPNEYKNENEKVVPFMAGESLKFRVK
                     "
     gene            complement(2718..3092)
                     /locus_tag="SB143_001838"
     CDS             complement(2718..3092)
                     /locus_tag="SB143_001838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TM2 domain-containing protein"
                     /protein_id="HEF9750334.1"
                     /translation="MDINTVLMMISDKIPSNSLPLVQDKLKNASEDKINSLAILPFKS
                     HIIGLILGLFLGAFGIDRFYKGDIGLGIAKLITWLVGVVTIWIYIGGLILFVLWIWCI
                     VDWFLVWKGIKKDNLNKILAVL"
     gene            complement(3245..3955)
                     /locus_tag="SB143_001839"
     CDS             complement(3245..3955)
                     /locus_tag="SB143_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEF9750335.1"
                     /translation="MNLWDKKAKSYARYNQKLNSIQEQSFKELEKLNISFKDKNIIDI
                     GCGTGVWTLHLAQNAKETTALDNAKAMLEILKEDANKLQLTNIKYENCTFTEWINKNQ
                     NAQFDIAFLSMSPALQDKKDYLNFMRLAKIRIYLGWADYRKSDFLDPIFKHFNTEFKG
                     IYKQDLESYLLENNVKFHKFIFDETRIVKRKKDEAIENALWHLNMNGVKASKQDLETF
                     VKGDIKETIQSKIKLLVF"
BASE COUNT         1401 a          580 c          644 g         1445 t
ORIGIN      
        1 aatttatgcc gtatatcgtt attatgtgcg ttttttaaaa ccaaagtccg aatttaaaac
       61 cataggtgat gatgctttta gggaaaataa tagcagtaaa aaacttttag ttttagtcgt
      121 aggtgaaacc gctagagcgg caaattactc tttgggtgga tatgctaaaa atgataccaa
      181 tttttatacc aaaaaagata atgtagtatt ttttgataat ttttcttcat gcggcactgc
      241 tacagcggtg agtctgcctt gtatgttttc tctttcaaag cgtcaaaact attcaagtag
      301 tgaatatcaa gaaaatgtta tggatatctt gcaaaaaaca ggcgtaaaag cttcttggat
      361 agacaataac tcaggcggat gcaagggagt ttgcgataga ttatctgaca agcagcaact
      421 ttctagcgat tgggatgaga atttattgcc atttttaaaa gaaagactag gaaatttaga
      481 tactcaaaat atcatagttc ttcatttaca aggctctcat ggaccagctt attataagcg
      541 ttatccaaat gaatttaaaa aatttatccc aacttgtgat actaatgaac tttcaaaatg
      601 tgatagtgaa gctttaatca atacttatga taatactttg ctttatacgg attatctttt
      661 aagtgagatt atcaaacttt taaaagaaaa aaaagattat gagagttctt taatatacct
      721 ttcagatcat ggagaaagtt tgggtgaaaa tggaatttat ttacacggaa tgccttatgc
      781 tatagcgcca agctatcaaa ctcatatccc tgtcattttt tggagcaatg ataaaaaact
      841 catgatgaca gctcaaaatc ataaaggctt aaaactttct caagataatc ttttcagcac
      901 acttttgggt tattttgatg ttaaaaccat ggtttatgag tcagattatg atttattaaa
      961 tcaaacctta aaggccaatt aatgaaacca aaatatcatc ttttaaacaa tgcacgatat
     1021 gctctagaag gaattctagc cctgcttaaa aatgaaatgg cttttcggct agagctttgt
     1081 gtgattatcc ccgctatcgt ttttagcttt tttttagatg taagcttttt ggagcatttg
     1141 tttttaatca ctgttttaat tctcatctta atcactgaag ctttaaattc agctattgaa
     1201 gcttgtgtgg atttgattac aaatgaatgg catgaaaaag ctaaagttgc taaagattgt
     1261 gcaagtgcgg cagtattttt tagtgtgtgt ttagcacttt ttatttgggg atttatctta
     1321 ggaaaattat ggctgtaaaa attgaaaatt taatgagaga aattttaggt aaaaaacgct
     1381 ttgagctgct tcaattttta tgtgaaaatg cggatgaaaa tggttttgtg atgataaaaa
     1441 taagcgagct tgaagcaaga ttaaaccaaa gcaaacctac catcatcgcc acttttaaat
     1501 ttttagaaga aaaaaagctt tttaaaaagt tgaaaaatgg attttatcaa ctttgcatcc
     1561 cttgtgatta gaaaataaat ttttatttta agtattcttt atcttagaac cactttttat
     1621 tattattttt agctttatag gataaaattt gctgattgat ttaggagaaa aaatgacact
     1681 taaaaaccca ctagatatgc atttgcattt aagagataaa aacatgctaa gcttggttgc
     1741 accttttagt gctaaagatt ttcgtgcggg tgtgattatg ccaaatttag ttccaccgct
     1801 ttgtgattta gagagtttaa aatcttataa aacgcgtata ataaatgctt gtgaaaatga
     1861 gaatttcact cctttaatga ctcttttttt taaaaattat gatgaaaaat ttcttaaaag
     1921 tgctaaggat gaaatttttg gtatcaagct ttatcctgcg ggcatcacca caaattcaaa
     1981 aggtggggtt tcaagttttg atatagagaa tttaaaaccc actttagaag cgatgagtga
     2041 tttgcaaatt ccacttttgg tacatggaga aaccaatgat tttgtgatgg atagggaaag
     2101 caattttgct aaaatctatg aaaatttagc taaaaatttt ccgcgtctta agattgttat
     2161 ggagcatatt acgactcaaa ccttatgtga acttttgaaa gattatgaaa atttatatgc
     2221 aaccattact ttacatcatt taatcatcac tttagatgat gttatcggtg gaaaaatgca
     2281 gccccatctt ttttgcaagc ctatagcaaa gcattataaa gataaagaag cgctttgtga
     2341 gcttgctttt ggtggatatg aaaaagtgat gttcggaagc gatagtgcac cacatcctaa
     2401 gcatgaaaaa gaatgttgcg gttgtgcagc gggtgtattt agtgcgagtg tagcactttg
     2461 tgttttggct gatcttttta gtaaaaattc aaatgaagtt aatttgcaaa agtttatttc
     2521 ggataatgct tgtaaagtgc ataatttaac ctttgaaaaa gaaaaaatca ttgttttaga
     2581 aaatcaagaa tggcaagttc caaacgaata taaaaacgag aatgaaaaag tagttccttt
     2641 tatggcgggg gaaagtttaa aatttagagt aaaataaaaa ctagttttaa aactagtttt
     2701 tatctaagtt gctattttta taatacagct aagattttat tgagattgtc ttttttgatg
     2761 cctttccata ctaaaaacca atccacaatg caccatatcc ataaaacgaa taaaattaaa
     2821 ccaccgatat aaatccaaat ggtaacaaca cctactaacc aagttataag tttagcaata
     2881 cccaaaccta tatcaccctt ataaaaacga tcaattccaa aggcacctaa aaacagacct
     2941 aagatcaaac ctataatatg acttttaaaa ggtaagatag caagagagtt gattttatct
     3001 tcacttgcat ttttaagctt atcttgcaca aggggcaagc tattggatgg aattttgtct
     3061 gaaatcatca tcaatacagt atttatatcc ataaaatctc ctataataat attagaacaa
     3121 aataataact aaaataatct aaaattactt ttaagtttaa ttttataaaa tgagcatttt
     3181 gataaaaata tttcagtatt acaagattat atatctacct taagatagaa ttttatctca
     3241 aggattaaaa aaccaaaagt ttgatttttg attgtatggt ttctttgata tcgcctttca
     3301 caaaagtttc taaatcttgc ttagaagctt taactccatt catatttaaa tgccacaagg
     3361 cattttctat ggcttcatct ttttttcttt ttactatgcg tgtttcatca aagataaatt
     3421 tatgaaattt cacattattt tctaacaaat aactttccaa atcttgttta taaataccct
     3481 taaattctgt attaaaatgt ttaaatatag gatctaaaaa atcactcttt ctataatcgg
     3541 cccagccaag ataaattcga attttagcca atcgcataaa gtttaaatag tcttttttgt
     3601 cttgcaaagc aggggacata cttaaaaatg ctatgtcaaa ttgagcgttt tgatttttat
     3661 ttatccattc tgtaaaagtg caattttcgt atttgatatt tgttagttgg agcttgttag
     3721 catcttcttt taaaatttct aacatagctt ttgcattatc aagagcagtg gtttcttttg
     3781 cattttgtgc taagtgtaaa gtccatactc ctgtgccaca acctatatct ataatgtttt
     3841 tatctttaaa gcttatattt agtttttcta attctttaaa actttgctct tgtatggaat
     3901 tgagtttttg attgtatctt gcgtagctct tagctttttt atcccaaaga ttcattgata
     3961 gtccttattt ttaaatcaat aaaatcatag cataaaaaat actaaattat taaattatct
     4021 atttgtaaat tctactaaca cctagttcaa actaggtgtt agtgaacaat
//
LOCUS       DARAII010000146         4070 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.148, whole genome shotgun sequence.
ACCESSION   DARAII010000146 DARAII010000000
VERSION     DARAII010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4070
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.148"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..149)
                     /locus_tag="SB143_001840"
     CDS             complement(<1..149)
                     /locus_tag="SB143_001840"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="catalyzes the formation of 4-phospho-L-aspartate
                     from L-aspartate and ATP, in Bacillus, lysine sensitive;
                     regulated by response to starvation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEF9750336.1"
                     /translation="MLIVQKYGGTSVGTLERIDAVAERVIKSAKEGHQLVVVVSAMSG
                     VTNTL"
     gene            complement(149..619)
                     /locus_tag="SB143_001841"
     CDS             complement(149..619)
                     /locus_tag="SB143_001841"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEF9750337.1"
                     /translation="MEKEKKYRPNVAAIVLSSAYPFECKLFIAKRSDMDNIWQFPQGG
                     IDEGEDPKSAVLRELKEEIGTDEVEIIAEHPEWLSYDFPEKVAKKMYPYDGQSQKYFL
                     VRLKHGAKININTKHPEFDAYQFVGVKQVFEIINHFKRNIYVKVIKYFEEKGYI"
     gene            714..1781
                     /locus_tag="SB143_001842"
     CDS             714..1781
                     /locus_tag="SB143_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEF9750338.1"
                     /translation="MHLYIHIPFCESKCHYCAFTSLKKHDYENRYFEALYEDISFHLQ
                     KLNIKKNSIKTLFIGGGTPSAVSAKNFEMILTLLEPFLSKNIEFSSEANPNSADIEWL
                     KTMKNLGLNRISFGAQSFHPKKLEFLGRIHDQKMIFKALENVNKLGFKKINLDLIYDT
                     KLDDKKMLEFELEQLKQIKNLITHLSAYNLTIEPLSAFAKKEHFKKNAPYLMKFFIQE
                     LQNLGFLQYEISNFAKNNAQICKHNLAYWKGLDYLGCGLSAVSCYKNERFYTAKNLKS
                     YLQNPIFRDVEKLNQEDLNLEHLFLGLRSIVGIKECKLSKIQKEKANLLVREKKLKFE
                     KGRYYNLNFLISDELALYLSS"
     gene            1844..2248
                     /gene="tatB"
                     /locus_tag="SB143_001843"
     CDS             1844..2248
                     /gene="tatB"
                     /locus_tag="SB143_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEF9750339.1"
                     /translation="MSFGEIIVILIVAILVLGPDKLPEAIVQIAKILKALKRNIDDAK
                     SSIEKEVRINDLKEEAKKYKDEFSSANENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RENSTPSPNEQNPNENQKPKLNPFENQEKVEK"
     gene            2249..2995
                     /gene="tatC"
                     /locus_tag="SB143_001844"
     CDS             2249..2995
                     /gene="tatC"
                     /locus_tag="SB143_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEF9750340.1"
                     /translation="MFEELRPHLIELRKRLFISVACVIVMFIVCFAFRSYILDVLKAP
                     LIQALPEVAKHVNVIEIQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFIVVPLAFKFLINFGLSEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLAIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDEEKEESDK"
     gene            2992..4017
                     /gene="queA"
                     /locus_tag="SB143_001845"
     CDS             2992..4017
                     /gene="queA"
                     /locus_tag="SB143_001845"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEF9750341.1"
                     /translation="MKDLLLSSYDYTLPNELIATYPVHPKEDAKLLVFERKNNQISHT
                     TFKNLQDFLPDCALFFNDTKVIKARIYGNKSSGGKIELFLHQPCLDSQDSLFLAQIKG
                     RVKKDEILSFEQNLKAKVIELLDDGLRKVHFFQNDEVLNTFKLYELLDTIGHVPLPPY
                     IKRSDEKSDLEDYQSIFAKNLGAVAAPTASLHFSENMLENLKKRHEIYHLTLHVGAGT
                     FKSVECENLENHKIHSEFFDIPKKACEVIDSQKKILGVGTTVTRTIEYYARTKQNQGF
                     CDLFLHPHNPPLRQDYLLTNFHLPKSTLIMLVSAFIGRQNCLKLYDIAIKEKYRFYSY
                     GDAMLIL"
BASE COUNT         1415 a          615 c          610 g         1430 t
ORIGIN      
        1 attaaagtat ttgtaactcc gctcatcgct gaaactacaa ccacaagttg atgtccctct
       61 tttgcacttt ttatgacacg ctctgctact gcatcaatgc gttctaaagt gccgacactt
      121 gttccgccat atttttgaac tataagcatt aaatataacc tttctcttca aaatatttaa
      181 taactttaac ataaatattt cttttgaaat gatttatgat ttcaaacact tgttttactc
      241 cgacaaattg ataagcatca aattcaggat gttttgtatt aatattaatt ttagcgccat
      301 gttttaatcg tactaaaaaa tatttttggc tttgtccatc ataaggatac atttttttag
      361 caaccttttc tggaaagtca taactcaacc attcagggtg ctcagctatg atttccactt
      421 cgtctgtgcc aatctcttct ttaagctctc ttaatacagc acttttaggg tcttctccct
      481 catcgatacc accttgtgga aactgccaaa tattatccat atcgcttctt ttagctataa
      541 aaagcttaca ctcaaaagga taagcgcttg ataaaacaat agcagcgaca ttgggtctat
      601 attttttttc tttttccact tttttccttc aattttaagc ttataatttt aacctaaatg
      661 aaatcaaaat ttcattaaaa taagaaaata acattataaa ttttaaggtt tttatgcatt
      721 tatatattca tatccctttt tgcgaaagca aatgccatta ttgtgctttt acgagtctaa
      781 aaaaacatga ttatgaaaat aggtattttg aggctttata tgaagatatt tcttttcact
      841 tgcaaaaatt aaatatcaaa aaaaacagca ttaaaaccct ctttatagga ggaggcaccc
      901 caagtgctgt tagtgcaaaa aattttgaaa tgatcttaac acttttagaa ccttttttaa
      961 gtaaaaatat agaattttca agcgaggcca atcccaattc agccgatata gaatggctta
     1021 aaacaatgaa aaatttaggg cttaatcgta tctcttttgg agcacaaagc tttcatccta
     1081 aaaagctgga atttttagga agaattcacg atcaaaaaat gatttttaaa gcattagaaa
     1141 atgtgaacaa attgggattt aaaaagatta atttagactt gatttatgat acaaaattag
     1201 acgataaaaa aatgcttgaa tttgaacttg aacaattaaa acaaattaaa aatttaatca
     1261 ctcatctaag tgcttataat cttaccatag aaccactgag tgcttttgca aaaaaggaac
     1321 attttaaaaa aaacgcaccc tatttaatga aatttttcat ccaagaactt caaaatcttg
     1381 gatttttaca atacgaaatc agcaattttg ctaaaaataa tgcccaaatt tgcaaacata
     1441 atttagccta ctggaagggt ttggattatc taggttgtgg tttgagtgcg gtaagttgct
     1501 ataaaaatga gcgtttttat acggctaaaa atttaaaatc ctatcttcaa aaccctatat
     1561 ttagagatgt tgaaaaacta aatcaagaag atttgaattt agaacattta tttttaggac
     1621 taagaagtat agtgggtatt aaagaatgca aattaagtaa aattcaaaaa gaaaaggcta
     1681 atttgcttgt aagagaaaaa aagctcaaat ttgaaaaagg gcgttattat aatcttaatt
     1741 ttttaattag cgatgagctt gccttatatc tctcatctta aattcaactt ttttaagtaa
     1801 aatgttcctt ttataaaatt tcaaattttt aagagtattg tttatgagtt ttggtgaaat
     1861 tattgtaatt ttaatagtag caattttagt tttagggcct gataaacttc ctgaagccat
     1921 agtgcaaata gcaaaaattt taaaggcttt aaaacgcaat atcgatgatg caaaatcaag
     1981 catagaaaaa gaagttcgta tcaatgattt aaaggaagaa gctaaaaaat acaaagatga
     2041 attttcaagt gcaaatgaaa acatccgtaa aaaacttagt tttgaagaat ttgatgattt
     2101 aaaaagagat attttggata aaactaaagt ggatttgact tttgatagca gagaaaattc
     2161 cacccctagc ccaaacgaac aaaatccaaa tgaaaatcaa aaacccaaac tcaatccatt
     2221 tgaaaatcaa gaaaaagtag aaaaataaat gtttgaagaa ttaagacccc atttaataga
     2281 acttagaaag cgtcttttta ttagcgttgc ttgtgtgatt gtaatgttta tagtatgttt
     2341 tgcttttcgt agctatatct tagatgtatt aaaagcacct cttattcaag ctttacccga
     2401 agtagctaaa catgtcaatg ttatcgaaat tcaagaggct ttatttacag ctatgaaggt
     2461 aagctttttt gctgctttta tcttttcttt acctgttatt ttttggcagt tttggaaatt
     2521 tgtagctcca ggtctttatg ataatgaaaa gcgtcttgta gtgccttttg taagctttgc
     2581 aagcattatg tttgctttag gggcttgctt ttgctatttt attgtagtgc ctttggcttt
     2641 taaattttta atcaattttg gtttaagtga agattttaat cctgtaatca ccataggaac
     2701 ttatgtggac ttttttacaa aagtagttgt tgcttttggc ttggcttttg aaatgcctgt
     2761 tatagcattt ttctttgcta aaattggact tattgatgat agtttcttaa aacgccattt
     2821 tcgcatagct gttttagcta tctttgtatt ttcagccttt atgactccac ctgatgtctt
     2881 atctcaattt ttaatggctg ggccactttg cggactttat ggactttcta ttttaatcgt
     2941 tcaaaaagta aatcctgctc caaaagatga agaaaaagaa gaaagcgata aatgaaagat
     3001 ttacttcttt caagctatga ttatacctta cccaatgaac ttatagctac ttatcctgtg
     3061 catcctaaag aagatgctaa actcttagtt tttgagcgaa aaaataatca aatttctcat
     3121 actactttta aaaatttaca agatttctta cctgattgtg ctctcttttt taatgatact
     3181 aaggtgatta aagcaagaat ttatggaaat aaatcaagcg gtggaaaaat agaacttttc
     3241 ttacatcaac cctgtttaga ttcacaagat tcgctttttt tagcacaaat taaagggcgt
     3301 gttaaaaaag atgaaatttt atcttttgaa caaaatttaa aagccaaggt tatagaactt
     3361 ttagatgatg gcttacgcaa ggtgcatttt tttcaaaatg atgaagtttt aaataccttc
     3421 aagctttatg aactccttga tacaatagga catgtgccct tgcctcccta tatcaaaaga
     3481 agtgatgaaa aaagtgattt agaagattat caaagtattt ttgctaaaaa tttaggggca
     3541 gtagcagctc ctacagctag cttacatttt agtgaaaata tgcttgagaa tttaaaaaaa
     3601 agacatgaaa tttatcattt aactttgcat gttggtgcag gaacttttaa aagtgtagaa
     3661 tgtgaaaatt tagaaaatca caaaatacat agtgaatttt ttgatattcc taaaaaggca
     3721 tgtgaagtga ttgattccca aaaaaagatt ttaggcgtag gcactacagt aacaaggact
     3781 atagaatact acgcaagaac caaacaaaac caaggctttt gcgatctttt tttgcatcct
     3841 cacaacccgc ccttaagaca ggactatctt ttaactaatt ttcatctacc aaaatcaact
     3901 ctgattatgt tggtttcagc atttataggc agacaaaatt gtcttaagct ttatgatatt
     3961 gccataaaag aaaaatatcg tttttactct tatggcgatg ctatgcttat tttataaatt
     4021 tattctttaa atttcatagc aatttttgct tgaagtttaa gccaatcttt
//
LOCUS       DARAII010000147         4040 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.149, whole genome shotgun sequence.
ACCESSION   DARAII010000147 DARAII010000000
VERSION     DARAII010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4040
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.149"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..904
                     /gene="pncB"
                     /locus_tag="SB143_001846"
     CDS             <1..904
                     /gene="pncB"
                     /locus_tag="SB143_001846"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEF9750342.1"
                     /translation="TRRAHGSEAALKGARAAIIGGCKASSCTLAGKNYSIMTSGTMAH
                     SWVQMFDDELSAFCHYLELYPQNPTLLIDTYNYKQGLENAVKAFKKFKIKQCGVRIDS
                     GNLEILSKEIRTILDKNDLKECKIIVSNSLDEKSINKLLKNDAPIDAFGVGEKLITAS
                     SDPIFGCVYKLVAIEEDKLITPKIKISEDKQKITLPHFKKLFRIYDKNTQKMLFDELY
                     IYNEKLPKLDENLERKELLKCVFKEGKILNKQKNVEEIALYAKSQISKLDEKFLNFNN
                     KEKYKIKLSKDLTKLRQNFTNTTL"
     gene            complement(998..1537)
                     /locus_tag="SB143_001847"
     CDS             complement(998..1537)
                     /locus_tag="SB143_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEF9750343.1"
                     /translation="MLIRFKDKFPNLGQNVFVAEGAKIIGEVEIGDESSVWFNCVLRG
                     DVNFIKIGKRTNIQDLTTIHVWHREFNKDGSLKDAGFPTCIGDDVTIGHNCVIHACKI
                     GSRVLVGMNAVIMDDAAIGDDSIVGAGSVVTKGKKFPPKSLILGNPAKLIRELSDEEV
                     AFLKQSALNYVEFKNDFLD"
     gene            1656..2285
                     /locus_tag="SB143_001848"
     CDS             1656..2285
                     /locus_tag="SB143_001848"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEF9750344.1"
                     /translation="MNAFEQKRCQSMAEEIAQKVFINEELFNAFCQVPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALNFKDADSVLEIGCGSGYQAAILSKIIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFEDGQNGWKNYAPYDRILFSAYTTQLPEILL
                     DQLSDGGILVAPILHNGKQFITRITKNGTHLQKEILEECLFVPIVDGKE"
     gene            complement(2305..3495)
                     /locus_tag="SB143_001849"
     CDS             complement(2305..3495)
                     /locus_tag="SB143_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEF9750345.1"
                     /translation="MKMNYKEQSHIIPTYKRFDIVLESGEGVYLLDDKGKKYLDFSSG
                     IGVCALGYNHAEFNAKIKAQVDKLLHTSNLYYNENIAQAAKHLAKASGLERVFFTNSG
                     AESIEGAMKVARKYAFNKGIKGGNFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDFSSVERLVNEKTCAIILESVQGEGGVNPAQKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHSGILPDVMTSAKALGCGLSVGAFVVSEKVAQKSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKKEKILENVSKLTPYLEQSLENLIKEFRFCKKRKGLGF
                     MQGLSLDKSVKVAEVIKKCQENSLLLISCGENDLRFLPPLIIEKSHIDEMSEKLRKVF
                     KSFE"
     gene            complement(3499..>4040)
                     /gene="argB"
                     /locus_tag="SB143_001850"
     CDS             complement(3499..>4040)
                     /gene="argB"
                     /locus_tag="SB143_001850"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEF9750346.1"
                     /translation="NYINKNLVHSLQNLGVKAIGLCGKDGGLLECVQKDENLGFVGEI
                     QKVNSSVLQDLLEKDFLPIIAPIGMDENFNTYNINADDAACAIAKALKAEKLAFLTDT
                     AGLYENFEDKNSLISKISITQAKALVDKIQGGMHVKLKSCIDACESGVKKVHILDGRV
                     KHSLLLEFFTDEGIGTLVG"
BASE COUNT         1389 a          771 c          561 g         1319 t
ORIGIN      
        1 cacgcgaaga gctcatggaa gcgaggcggc actcaaaggg gcaagagcgg ccataatagg
       61 aggttgcaaa gctagctctt gcacacttgc agggaaaaat tatagcatta tgacaagtgg
      121 aactatggcg cattcttggg tgcaaatgtt tgatgatgaa ttgagtgctt tttgtcatta
      181 tttagaactt tatcctcaaa atcctacctt actcatcgat acttataatt acaaacaagg
      241 gctagaaaac gcggtcaaag catttaaaaa atttaaaatc aaacaatgcg gtgtgcgtat
      301 tgattctgga aatttagaaa tacttagcaa agaaattcgt actatcttgg ataaaaatga
      361 tttaaaagaa tgcaaaatca tcgtttcaaa ttctttagat gaaaaaagca taaacaaact
      421 gcttaaaaat gatgcaccta ttgatgcttt tggggtaggc gaaaaactca tcactgcttc
      481 aagtgatcct atttttggct gtgtttataa actcgttgcc atagaagaag ataaactcat
      541 cacgcctaaa attaaaatca gcgaagacaa acaaaaaata accctaccgc attttaaaaa
      601 actttttaga atttatgaca aaaacactca aaaaatgctt tttgatgagc tttatattta
      661 taatgaaaaa ttacctaaac ttgatgaaaa tttagaaaga aaagaacttt taaaatgtgt
      721 ttttaaagag ggtaaaattc ttaataaaca aaaaaatgta gaagaaattg ccctatatgc
      781 aaaaagtcaa atttcaaagc tggatgagaa atttcttaat tttaacaaca aagaaaaata
      841 taaaatcaaa ctttcaaaag atttaacaaa gctaagacaa aattttacaa acacaactct
      901 atgaaatttt gtcgatatag ctcaaatgct ccatttgtct atttaaaatg gataaatttg
      961 agctttttca taaaaacagc gttgttaaaa ttttaaatca atccaaaaaa tcatttttaa
     1021 attcaacata atttaaagca gattgtttta aaaatgccac ttcttcatcg cttagttcgc
     1081 gtataagttt tgcagggttt ccaagtatga gtgatttggg tggaaatttc ttgcctttgg
     1141 ttaccacact acctgcaccc actatactat catctcctat agctgcatca tccataatca
     1201 ctgcattcat ccccacaagc acacgagagc cgatcttgca agcatggatc acgcaattat
     1261 gccctatagt aacatcatct cctatgcaag taggaaagcc tgcatctttt aaacttccat
     1321 ctttattaaa ttctctatgc cacacatgga tagtggttaa atcttgtata tttgttcttt
     1381 ttccgatttt aataaaatta acatcgcctc ttaaaacaca attaaaccat acactgcttt
     1441 catcacctat ctctacttct cctataatct tagcaccctc tgcaacaaag acattttgac
     1501 ccaaatttgg aaatttatct ttaaatcgaa taagcatttt catccttttt tatttttagt
     1561 ataaccaaaa tatcaataag aaaaacaaat tttttagttt ttaatcaaat tttgaaactt
     1621 tattcgttac aatttgccat ttacgaggag aaaaaatgaa cgcatttgag caaaaacgat
     1681 gtcaaagtat ggccgaagaa atcgcacaaa aagtatttat caatgaagaa ctttttaatg
     1741 ctttctgtca agttccacgc gaaatttttt ccccacttaa agcccatgct tatcgtcttg
     1801 atgctttacc tttagctaat tctcaatgga tcagctctcc tttaaccgtg gctaaaatga
     1861 ctatggcttt aaattttaaa gatgcggaca gtgtcttaga aataggctgt ggaagtggtt
     1921 atcaagcagc gattttaagc aagattataa ggcgtgtttt taccatagaa cgcatagaaa
     1981 atttagccaa aaaagcagca caaaccttta gagaactcga gctttttaat attaatgtta
     2041 aatttgaaga tggacaaaat ggatggaaaa attatgcacc ttatgataga attttattct
     2101 ctgcttatac gacacaactt cctgaaattt tactcgatca gctaagtgat gggggcatac
     2161 ttgtagcccc tattttgcac aatggcaaac aatttatcac acgcataacc aaaaatggca
     2221 ctcatttaca aaaagaaatt ctagaagaat gtctttttgt acccatagta gatggaaaag
     2281 aataaatttt tatcaataaa aaatttattc aaaactttta aaaacctttc ttagcttctc
     2341 gctcatttca tctatatggc ttttttctat gattaaaggg ggtaaaaatc tcaaatcatt
     2401 ctccccacaa ctgataagca aaagagaatt ttcttgacat tttttaatca cctcagctac
     2461 ttttacactt ttatcaagac taagcccttg cataaaaccc aaaccttttc tttttttaca
     2521 aaacctgaat tctttgataa gattttccaa actttgctct aaataaggcg taagtttaga
     2581 aacattttct aaaatttttt ctttcttaaa aatttcaaaa accgcattaa cacctgcaca
     2641 aactaaagga tttcctccat aagtacttcc atgatcgcct gcttctaagg atttttgtgc
     2701 tactttttcg ctcactacaa aagctccgac actaagccca catcccaaag ctttagcaga
     2761 agtcattaca tcaggtaaaa ttcctgaatg ctcgtaagca aaaaatttac cacttcgccc
     2821 catgccgcat tgaatttcat cagcgattaa caatatatct ttttcatcgc aaagctttct
     2881 taaagccttg taaaaatctt tttgagcagg attgacacca ccttctcctt gcacactttc
     2941 taagataata gcgcaagttt tttcattgac taagcgttct acgcttgaaa aatcattata
     3001 ctttgcaaat ttaacacctg aaattaaagg cttgaatggt ttttggtatt tttcattagc
     3061 ggttaaagat aaagctccta gtgttcttcc atgaaaagaa tgtttaaagg ctatgaaatt
     3121 tccacccttg atacctttat taaaagcata ttttctagcg actttcatcg ctccttctat
     3181 actttctgct cctgaatttg tgaaaaatac acgctctaag ccactcgctt tagctaaatg
     3241 cttggctgct tgggctatgt tttcattata atataaattg ctagtatgta aaagtttatc
     3301 aacttgggct ttaatcttag cattaaattc agcatggtta tatcctaaag cacatacacc
     3361 tataccactt gaaaaatcaa gatatttttt acccttatca tctaaaaggt aaaccccttc
     3421 tccgctttct aaaacaatat caaaacgctt ataagtaggg ataatatgac tttgctcttt
     3481 ataattcatt ttcatccttt aacccactaa agtcccaata ccctcatcgg taaaaaattc
     3541 aagcaacaaa gaatgcttca cgcgtccatc taaaatatgc actttcttaa ctccactttc
     3601 acaagcatct atacaagatt ttaattttac atgcataccg ccttgaattt tgtcaaccaa
     3661 ggcttttgct tgggttatag aaattttaga aattaaagaa tttttatctt caaaattctc
     3721 ataaagtcct gcagtatcgg ttaagaaagc aagtttttcc gcctttaaag ctttggcaat
     3781 agcacaagct gcatcatcgg cattgatatt gtaagtattg aaattttcat ccattccaat
     3841 aggagctatg atgggtaaaa aatctttttc taagagatct tgcaaaacac ttgaatttac
     3901 cttttgtatc tcgcctacaa aacctaaatt ctcatccttt tgcacgcatt ctaaaagtcc
     3961 cccatccttg ccacaaagcc ctatagcttt aacacctaaa ttttgcaagc tgtgaactaa
     4021 atttttattg atataattta
//
LOCUS       DARAII010000148         4031 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.150, whole genome shotgun sequence.
ACCESSION   DARAII010000148 DARAII010000000
VERSION     DARAII010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4031
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.150"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            93..620
                     /locus_tag="SB143_001851"
     CDS             93..620
                     /locus_tag="SB143_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEF9750347.1"
                     /translation="MATLNSCTRLDPIDKAGLEALKKAGIENPDVIKTLKCRTVAAGK
                     FRHENYIRNLPAYIVDEPPVLLGDDTAPNPSEAVLAALGSCVAVGIHANAIDKNIVIT
                     KLELELEGDLNITAVWGTGDLDENKPLGFTDVRIKVDLQTNKDKATNDALIAHAIKYS
                     PVANTLLRKVNVEVK"
     gene            630..1685
                     /locus_tag="SB143_001852"
     CDS             630..1685
                     /locus_tag="SB143_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA/acyl-ACP dehydrogenase"
                     /protein_id="HEF9750348.1"
                     /translation="MQTLQKLVQKIDKEGYYPKNQIKALANDGFFAVLEQRSDIFKAV
                     ENISKISNICGTTGFCMWCQFALIWYVLNSKNLELKARLLPKLYGGEILGGTALSNPM
                     KSFAGIEKNRLKAKKTNGGYIINGTLPWVSNIEQDSAFGAIALLPDEKPIMGVIFCDE
                     SVKLSSHIKYATLEGSATKTITLKDYFLKDTEVLGGDDIYEYLIKITPGFILLQVGIA
                     TGIINQSLECIQKSQLTHAHINEFLPYTYDGLRAEFIELLERLKDACGNIENLNSQNI
                     LTLRLDASLLTQKITGAAVLFSGAMGYLADAKPQRLQREGNFVLIITPSIKHILKELQ
                     NIQKGDGCINKWKKEIL"
     gene            1682..2599
                     /locus_tag="SB143_001853"
     CDS             1682..2599
                     /locus_tag="SB143_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEF9750349.1"
                     /translation="MNRRNALLFLASFMALYAGKAMAKEGSKFKIPIKIGFLPISDHL
                     LIIAKELFVSQNYELVGIKFSNWADISEALRAGALDGAFLLAPLGLNLKASGVPIKAV
                     LSAHKNGSALVVNKNINSVNDLKGKKIAVPSRFSMHYFLLDKLLNDNNISDVNIIDMA
                     PPEMPFALVSGQIDAYIVAEPFGQIGVRLGAKNLLLSKEIKPNHICCVLNLKDEILKI
                     PQISELLDAFKKTAVFIEQNSAKSAILGNKIMAQKTQILQNVLEKKLVTYDDLSLSEQ
                     DLSQLRDFLVAKNLGSAKLASLNIKDYLL"
     gene            2596..3333
                     /locus_tag="SB143_001854"
     CDS             2596..3333
                     /locus_tag="SB143_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9750350.1"
                     /translation="MKILRILFSIGIFISIWAFFSNELISSPKQSFEAILELGKLGTL
                     QDGLKDSLVRYILGLSIGVIFGVIFGVILGFMPRLNAFINPVLDLLRPISPIAWVPVV
                     VIIFGIGDKPTIFIIAYAVFFPVVLLSINALKQVPRELVLISKNFGANAWQLFYGVYF
                     PSCIFTLVSALKLGASLAWINLVVGEMVGAQTGLGYLIIDARNQLEIPTVLGLIFIIG
                     IIGMTINALFNTIELYFTKRFGYDKNQ"
     gene            3269..>4031
                     /locus_tag="SB143_001855"
     CDS             3269..>4031
                     /locus_tag="SB143_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9750351.1"
                     /translation="MLYLILLNYILQKDLVMIKINNLQKFFNNECILDSINLHIKKDE
                     FVVLLGASGSGKSTLLKILSGYESFEYGDVSVDNQNFIGKIPSHKSRQIITQQYSLLP
                     WLSAKANIEFALKCYGFKDKKERKERAEQFLALVHLQNKADLFPHSLSGGQAQRVAIA
                     RALSLNPTILFLDEPFSALDPIVRLKLQNEIKELSINKSVIFVTHDIDEAINIADTIV
                     ILRQGKIISKLKNPRFSPHSSNFFELKSKIFDILNG"
BASE COUNT         1393 a          562 c          790 g         1286 t
ORIGIN      
        1 ggttggtatt gaaaaagttt ataatattgt gtataattta ctgcacttaa taaaaatatt
       61 ttattaagta tattttaacc aaggagcaga aaatggctac tttaaactct tgcactagat
      121 tagatccaat tgataaggca gggcttgaag cccttaaaaa agcaggtata gaaaatcctg
      181 atgtaataaa aacgcttaaa tgccgcacgg tagctgcagg caaattccgc cacgaaaatt
      241 acattcgtaa tttgcctgct tatatagttg acgagccacc tgtgcttttg ggtgatgata
      301 ctgcgccaaa tcctagcgaa gctgtgctag cagcacttgg aagctgtgtg gccgtaggca
      361 ttcatgcaaa tgccatagat aaaaatatag taattaccaa gcttgaatta gagcttgaag
      421 gggatttaaa tatcaccgct gtttggggaa cgggggattt agatgaaaat aaaccgctag
      481 gctttacaga tgtgcgcata aaagtagatt tgcaaacaaa taaagataaa gccacaaatg
      541 acgcattaat tgcacatgct attaaatatt cacctgtagc taacacacta ctacgtaaag
      601 tgaatgtaga agtaaaataa ggataaaaaa tgcaaacgct acaaaaacta gtccaaaaaa
      661 tagataagga aggctattat ccaaaaaatc aaattaaagc ccttgcaaat gatgggtttt
      721 ttgctgtttt agagcaaaga agtgatatat ttaaagctgt ggaaaatata agcaaaattt
      781 cgaatatttg tggtacgact ggtttttgta tgtggtgtca gtttgcactc atttggtatg
      841 ttttaaatag taaaaattta gagctaaaag ctagactttt gccaaaactt tatggtggag
      901 aaattcttgg tgggacagca ttaagtaatc ctatgaaaag ctttgccggc attgaaaaaa
      961 accgcctaaa agcaaaaaaa actaatggcg gatatataat aaatggtact ttgccttggg
     1021 tttcaaatat agagcaagac tcggcttttg gtgctattgc tttattacct gatgaaaaac
     1081 ccattatggg tgtgatattt tgtgatgaaa gtgtaaaatt aagctcacat ataaaatatg
     1141 ccacgcttga aggttcagca actaaaacaa ttactctaaa agactatttc ctaaaagata
     1201 ctgaagtatt aggcggtgat gatatctatg agtatttgat taaaatcaca cccggtttta
     1261 tcttgctaca agtaggaatt gcaaccggta taataaatca aagcttagaa tgcatacaaa
     1321 agtcgcaatt aacacatgct catataaatg aatttttgcc gtatacttat gatggcttaa
     1381 gggctgagtt tattgaactt ttagagcgtt taaaagatgc ttgtgggaat atagagaatc
     1441 taaattctca aaacatttta actctaagac ttgatgcttc attgctgacg caaaaaatca
     1501 caggtgcagc agtacttttt agtggagcga tggggtattt agcagatgca aaaccacaaa
     1561 gattacagag agaaggcaat tttgtgctaa ttataacacc aagtataaaa catattttaa
     1621 aagaattaca aaatatacaa aagggcgatg gttgcataaa taaatggaaa aaggagattt
     1681 tatgaataga cgaaatgctt tattgttttt agctagtttt atggcattgt atgctggtaa
     1741 agctatggcc aaagaaggct caaaatttaa aattccaata aaaatcggtt ttttgcccat
     1801 aagcgatcat ttgctaatta tagctaaaga gctttttgtg agtcaaaact atgagcttgt
     1861 ggggataaaa ttttcaaatt gggctgatat tagcgaagca ttgagagctg gtgcacttga
     1921 tggggcgttt ttgctagctc cacttggact aaatctaaaa gctagtggtg tgcctataaa
     1981 agcagtttta agtgcgcata aaaatggctc agcgcttgta gtgaataaaa atataaatag
     2041 tgtaaatgat ttaaaaggta aaaaaattgc cgtgccttca agatttagta tgcattattt
     2101 tttactagat aagttgctaa acgataacaa tataagcgat gtaaatataa tagatatggc
     2161 accacctgag atgccttttg cgttagttag tgggcaaatt gatgcttata tcgtagctga
     2221 accttttgga caaattggtg taagattggg tgcaaaaaac ttgcttttaa gtaaagaaat
     2281 aaagccaaat catatttgtt gtgtactgaa tctaaaggat gaaattttga aaattccaca
     2341 aattagtgag cttttagatg catttaaaaa gacagcagtt ttcatagaac aaaatagcgc
     2401 taagagcgca attttaggta ataaaataat ggctcaaaaa acccaaattt tacaaaatgt
     2461 actagaaaaa aaattagtta catacgatga tttaagtctt agtgaacagg atttaagcca
     2521 attaagagat tttttggtgg ctaaaaattt gggtagtgca aagctagcaa gtttgaatat
     2581 aaaggattat ttgctttgaa aattttaaga attttattta gtattggcat ttttataagt
     2641 atttgggcgt ttttttcaaa tgagttaatt tctagcccaa agcaaagctt tgaggcaatt
     2701 ttagagctcg gcaagcttgg gacattgcaa gatggactta aagattcact tgtgcgctat
     2761 attttaggac ttagcatagg agtgattttt ggagtgattt ttggagtgat tttaggtttt
     2821 atgcctaggt taaatgcttt tattaaccca gtgttggatt tattaaggcc tatttcacct
     2881 attgcttggg tgccggttgt agtgattatt tttggtatag gtgataagcc cacaattttc
     2941 atcattgctt atgctgtatt tttccctgtg gtgcttctta gtataaatgc tttaaagcaa
     3001 gttccacgtg agctagtttt aatcagtaaa aattttggtg caaacgcttg gcaattattt
     3061 tatggtgttt attttccatc ttgtattttt actttagtgt ctgcattaaa acttggtgca
     3121 agccttgctt ggataaatct agtagttggc gaaatggttg gtgcgcaaac cggattggga
     3181 tatttgataa tagatgctag aaatcagcta gaaataccaa ctgttttggg gttaattttc
     3241 atcataggca taatcggaat gacgataaat gctttattta atactattga attatatttt
     3301 acaaaaagat ttggttatga taaaaatcaa taatttacaa aaatttttta ataatgaatg
     3361 cattttagat agtataaatt tgcatatcaa aaaagatgaa tttgtcgttc ttttaggcgc
     3421 atcaggttct ggtaaaagca ccttgcttaa aattttaagc ggatatgaaa gctttgagta
     3481 tggcgatgta agtgtggata atcaaaattt tatcggcaaa attccaagcc ataaaagtcg
     3541 tcaaattatc acccaacaat attctctttt gccatggtta agtgcgaagg caaatataga
     3601 atttgcacta aaatgttacg gttttaaaga taaaaaagag cgcaaagagc gtgcagagca
     3661 gtttttagct ctagtgcatt tgcagaacaa agccgattta tttccacatt cacttagcgg
     3721 cggtcaagcc cagagggtag ccatagcgcg tgcacttagt ttaaatccaa ctattttatt
     3781 tttagatgag ccattcagtg ctcttgatcc tattgtgcgt ttaaaactcc aaaatgagat
     3841 aaaagagcta agcataaata aaagtgtgat ttttgtaact catgatatag acgaagctat
     3901 aaatatagcc gatacaatcg taattttacg acagggaaaa attatatcaa agttaaaaaa
     3961 tccgagattt tccccacatt catcaaactt ttttgagtta aaatctaaaa tttttgatat
     4021 tttaaatgga c
//
LOCUS       DARAII010000149         3969 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.151, whole genome shotgun sequence.
ACCESSION   DARAII010000149 DARAII010000000
VERSION     DARAII010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3969)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3969)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3969
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.151"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            76..1743
                     /locus_tag="SB143_001856"
     CDS             76..1743
                     /locus_tag="SB143_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEF9750352.1"
                     /translation="MSEVNKKVQNNLEDYLEDEDFGQLLEAFDKSREETITEGVIVEI
                     KNDEVYVDIGRKSEGILALNEIQDENANLLFKVGDSIKVAVVGSRGGRSLLSHKKALR
                     KEKVIDFIQNYKEDDEYIFEVKVVGKNKGGLVVVNDDVEFFLPKSQYGFKENNNLIGK
                     TFKVKIIKVDKEEQSIIVSRKKTLDDERKKRKELINNIAQQEGLIEGVVKKITTYGMF
                     VDVGGVDGLVHYSEISYKGPVNPSILYKEGDKVPVKVVKYDKDRKHLSLSIKAALPDP
                     WGEIKDSLEVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYISK
                     GQEIDVEVIEINSDERRLRVSLRNLLSKPFDEFMKNHKIGDVIEGEVTSTTSFGAFVK
                     IGSVEGLLHNEDASWDRNEKCKDKFNNGDIIKVKIIKIDEEGQKISLSIKELSESPVQ
                     EYAKNHKVGDIVKGKIRDIKDFGVFVELNKNVDALIHKEDISASTLENLKIGDEIEAA
                     IAFIDEKKNRIRLSVKNLVRIKEREVLNEINSDDKVTLGDIIKDQLA"
     gene            1746..2234
                     /locus_tag="SB143_001857"
     CDS             1746..2234
                     /locus_tag="SB143_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750353.1"
                     /translation="MKKYATISILSILLLILLIVVFVLLWKFKANSNFIPEFAKDTNT
                     HQIEERQTQELTWREELAKWPSKDFTPAVEQFTLHFDADTSELKEKNKYYQLVVNKHD
                     IYSMFCLRQTLNSFNVKYFLLKSGESPEIFLDTGNKNLIDDIIKELKKYKINTEAKEI
                     WL"
     gene            2231..3814
                     /locus_tag="SB143_001858"
     CDS             2231..3814
                     /locus_tag="SB143_001858"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEF9750354.1"
                     /translation="MKKKIIVCDAILDKGVELLRKAEDIELIEAAKVPKNELMDMLAD
                     VEVAITRSSTDVDVNFLNHAKKLKALIRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLSSARSFVNAHNFLKNERKWEREKWYGVELMGKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKSLDEILTQSDFITIHTPKTKETDGMIGA
                     NEIAKMKDGIRLINCARGGLYTEEALCEGLKSGKIAWLGIDVFEKEPATNHPLLDFEN
                     VSVTSHLGANTLESQDNIAREACEQALNAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGVIGEYATSMLTFAAVGALSGILGEKINYVNAEF
                     VAKEKGVDLSCETLPNSGYNNKLSVKIITENSNINVSGTVFNENEQRIVGLNGFQTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLASKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLEELRQLEACIFVQYVEI"
     gene            3801..>3969
                     /locus_tag="SB143_001859"
     CDS             3801..>3969
                     /locus_tag="SB143_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding response regulator"
                     /protein_id="HEF9750355.1"
                     /translation="MSKSKILIIEDDIDLNDLLSLRLKACDYQIFSLLDFKGVEDLLD
                     SEQIDLLIVDRN"
BASE COUNT         1471 a          495 c          769 g         1234 t
ORIGIN      
        1 ttaaaattct taacactaat taaagaaaaa taaggtaaaa tcagtcaaat tttaattttt
       61 ttcaaaagga ccatgatgag cgaggtgaac aaaaaagttc aaaacaattt agaggactat
      121 cttgaagatg aagactttgg gcagctttta gaagcttttg acaagtcaag agaagaaact
      181 ataactgaag gtgtaatcgt agagattaaa aatgatgaag tctatgtaga tataggcaga
      241 aaatcagaag gtattttagc attaaatgaa attcaagatg aaaatgctaa tttgttattt
      301 aaagtaggtg atagcattaa agttgctgtt gtaggctctc gtggtggtag atctttactt
      361 tctcacaaaa aagctttaag aaaagaaaaa gttatcgatt ttattcaaaa ttataaagaa
      421 gatgatgagt atatttttga agtaaaagta gtaggaaaga ataaaggcgg acttgttgtt
      481 gtaaatgatg atgtagaatt tttcttacca aaatcacaat acggcttcaa agaaaataac
      541 aatcttatag gtaaaacttt taaggttaaa atcatcaaag ttgataaaga agagcaaagc
      601 attattgtat ctagaaagaa aactttagat gatgaaagaa aaaaacgcaa agaacttatt
      661 aataatatcg ctcagcaaga agggcttatc gaaggtgttg taaaaaaaat tacaacttat
      721 ggtatgtttg ttgatgtggg tggtgttgat ggacttgttc actatagtga aatttcatat
      781 aaaggacctg taaatcctag tattttatac aaagaaggag ataaagttcc tgtcaaagta
      841 gtaaaatatg acaaagatcg caaacattta tccctttcta tcaaagcggc tttacctgat
      901 ccttggggag aaattaaaga cagcttagaa gtgggtgata ccattaaggt tattgtttca
      961 aatatagagc catatggtgc ttttgttgat ttgggtaacg atatagaagg atttttgcat
     1021 attagcgaaa tttcttggga taaaaatata aaaaatccaa aagattatat tagcaagggt
     1081 caagaaatcg atgttgaagt tattgaaatc aattcagatg aaagacgctt aagagtatct
     1141 ttaagaaatt tactttctaa accttttgac gaatttatga aaaatcacaa aattggtgat
     1201 gtgatagaag gagaagttac ttcaacgact tcttttggtg cttttgtaaa aattggttct
     1261 gtagagggtc ttttgcataa tgaagatgca tcttgggaca gaaatgaaaa atgtaaagat
     1321 aaatttaaca atggtgatat tatcaaagtt aagattatca aaatcgacga agagggtcaa
     1381 aaaatttctt taagcattaa agaacttagc gaatcacctg ttcaagaata tgctaaaaat
     1441 cataaagtag gcgatatcgt taaaggaaaa attagagata tcaaagattt tggagtattt
     1501 gtagaactca ataaaaatgt agatgcgctt attcataaag aagatattag tgcttcaact
     1561 cttgagaatt taaaaattgg tgatgaaatt gaagctgcaa ttgcatttat cgatgaaaag
     1621 aaaaacagaa ttcgcctaag tgttaagaat ttggttagaa ttaaagagcg agaagtatta
     1681 aatgaaatca atagcgacga taaagtaact ttaggtgata tcattaaaga tcagttagct
     1741 taatgatgaa aaaatatgca actataagca ttttgagtat tttattactc atcttgctta
     1801 ttgtcgtttt tgtactgctt tggaaattta aagcaaattc taactttatt cccgaatttg
     1861 ctaaagatac aaatacgcat cagattgaag aaaggcaaac ccaagaactc acttggcgag
     1921 aagaattagc caaatggcct agtaaagatt ttactccagc cgtagagcaa tttactctac
     1981 attttgatgc agatactagt gagcttaaag aaaaaaacaa atactatcaa cttgttgtta
     2041 ataagcatga tatttactcc atgttttgtt taagacagac tttaaattct tttaacgtga
     2101 agtatttttt attaaaatcc ggcgaaagtc ctgaaatctt tttagatacg ggcaataaaa
     2161 atttaattga tgatattatc aaagaactta aaaaatataa aattaacaca gaagcgaagg
     2221 agatttggtt atgaaaaaaa agattattgt ttgtgatgca attttagata agggtgtaga
     2281 gcttttaaga aaagctgagg atattgagct tatagaagct gctaaagttc caaagaatga
     2341 gttaatggat atgcttgcag atgtagaagt cgctattact agaagttcta ctgatgtaga
     2401 tgtcaatttt ttaaatcatg ctaaaaaact caaagctctt atacgcgcag gagtaggggt
     2461 ggataatgtt gatatccctg aatgttccaa acgcggtgtt atagtaatga atgtcccaac
     2521 tgctaatacc attgctgcag tagagcttac tatggctcat cttctaagtt ctgctagaag
     2581 ttttgttaat gcacataatt ttttaaagaa tgaaagaaaa tgggaaagag aaaagtggta
     2641 tggcgtagag ctcatgggta aaaccttggg tgttatcggt tttggaaata taggttcgcg
     2701 tgtagccatc cgtgccaaag cttttggtat gaaaattcta gcctacgatc catatatttc
     2761 agcttctaaa atcacagact tagatatgga gcaagcaaaa agtttggatg aaattcttac
     2821 tcaaagcgat tttatcacca tccatacgcc aaaaactaaa gaaactgatg gtatgattgg
     2881 tgctaatgaa atcgcaaaaa tgaaagatgg tataagactt attaattgtg ctcgcggggg
     2941 cttatataca gaagaagctc tatgcgaagg cttaaaaagt ggtaaaatag cttggcttgg
     3001 tatcgatgtt ttcgaaaaag aacctgctac caaccatcct cttttagatt ttgaaaatgt
     3061 ttcagtaacc tctcatcttg gagctaatac tctagaaagt caagacaata ttgcaagaga
     3121 agcttgtgaa caagccctaa atgcggctag aggtgtggca tatcctaatg ctcttaattt
     3181 acctattaaa actgaggatt taccaccttt tgtagcacct tacatcgagc ttgtttctaa
     3241 gatggcattt ttagcagttc aaattgataa aaatcctata aaaagtatta aattagaagc
     3301 agaaggggtg ataggcgaat atgctacttc aatgcttaca tttgctgctg taggagcttt
     3361 aagtggaatt ttaggtgaaa aaataaatta tgttaatgct gaatttgttg ccaaagaaaa
     3421 aggtgtagat ttatcttgcg aaacccttcc aaatagcggt tataacaaca aacttagtgt
     3481 taaaatcatc acagagaatt caaatattaa tgtttcagga actgtattta atgaaaatga
     3541 acaacgcata gttggattaa atggctttca aactgatttc aagccaaaag gaaaaatgat
     3601 tattttcaaa aataaagata tcccaggggt tattgctaaa atcagctctg tcttagcatc
     3661 taaaaatatc aatatcgctg attttagatt gggtagagat ggttttggat atgctttagc
     3721 agtggtattg atcgatgaaa aagtgcaaaa agaagtttta gaagaattaa gacaactaga
     3781 ggcgtgtata tttgtacaat atgtcgaaat ctaaaattct tatcatagaa gatgatatag
     3841 atttaaatga tttgcttagt ttaagactta aggcttgcga ttatcaaatt ttttccttgt
     3901 tagattttaa aggagttgaa gatttgctag atagtgagca aatcgatctt ttgatagttg
     3961 atagaaatc
//
LOCUS       DARAII010000150         3854 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.152, whole genome shotgun sequence.
ACCESSION   DARAII010000150 DARAII010000000
VERSION     DARAII010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3854)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3854)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3854
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.152"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            132..2960
                     /locus_tag="SB143_001860"
     CDS             132..2960
                     /locus_tag="SB143_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
                     /protein_id="HEF9750356.1"
                     /translation="MKRFYFLFFSTLFFAPSFLFGATNIANSNLIYTWGYGDVMNEIM
                     QAVKGITTETDYIVNAALAISLLLFSIKKAMDGQTNPVFEFGKMFMLFAVVWYMFLRA
                     PNDNNHRFMIHDEVTSKDYVISQIPIGIGKSFALMTQFEKVILEAMEKHFTTPQSTNF
                     SNAGLGFSLQVMSTLPNVKLSAIDATLQKNIDFYFRNCVSVGILLNQQGRNLFQNSDN
                     LMQDLFTNIGNGSQLTPLFENNNNIEKQSVVPCSDAGPQIVEMIKNDTDEAMKIHAAL
                     LGMANDMANYEQKFLGAAQIYNEQAVSARSYLQQSMIMLASQDAIINTAKSVGLNPAS
                     VAANTAYADQQFYASMQAQGHLAQTYLPLAKAYLTAIIIGLSWLVALLSIVFGSYAHI
                     KMFFTLCIWIVLWTPILCIINFLNDFNLMKVAQVITGGKAALSLGDNILIFKEVASRS
                     NFMNYLVMSTPVLAYAIAKASEQGFVTFASGLSQALTGASRAAGSFANQQALSTQTSI
                     AAPRGDEVWAMNAGVVSLQSAMSAGGGRFSMSAITGGGTTVKDVNTNTNFALGSNGEI
                     TNMSIAGLDAKHAQSETQTRQDSLANSIADTHKTGINQGITSNYLRNHGAGVEDTKAI
                     EKAEAQALRETMSEVLGDKSSFNEADKKALEGSVGAYASGSAGLEIFGSGGKIGGEIK
                     GTASIGTGSTETQEYSRSLSKEGQAAFDKMYAEKLGNIIKSSDSVASAYSNALSTSTG
                     SEFADAKQKAHSYSEASQYSEAIQTSNLPNMAENYIAENNLGGTREQQVAAAAKGLEN
                     LAARGDLQGLLHYANMNTAKPNADGIHDVSNKSYYSPSSVGANNAHNNDTVANQNSLN
                     NLGTAGGNNIRNEFSQQSGAAISNFKNQGTSTSNVVNNSAKDAIAEQNANRRMGVNPS
                     SYAIQDASKSGNELAKEAQGLFDAMSKK"
     gene            complement(3035..3388)
                     /locus_tag="SB143_001861"
     CDS             complement(3035..3388)
                     /locus_tag="SB143_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750357.1"
                     /translation="MDKVEVKLKKSKMTTTEKLILTLWLSCGVAAIVLLLVYLKIITS
                     FIGILGLLSVSSLVIAFVLFLAKNIKIVPYDEKKHGGYRSDNNTHFSEFLDGYATGYS
                     MSIHGIDGEALHSDK"
     gene            complement(3400..3675)
                     /locus_tag="SB143_001862"
     CDS             complement(3400..3675)
                     /locus_tag="SB143_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002817426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system YafQ family
                     toxin"
                     /protein_id="HEF9750358.1"
                     /translation="MRKINLLRSFKKDYEKVKKQSWDLNTIDDVIQCLMNLDVLPTRL
                     KDHALKGEFKDFRECHIFGDLVIIYKRDDKILSLYRIGRHQDLFKKY"
     gene            complement(3676..>3854)
                     /locus_tag="SB143_001863"
     CDS             complement(3676..>3854)
                     /locus_tag="SB143_001863"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750359.1"
                     /translation="NADEKLLKAVQSIVSLSPKATLEIEQEIPSGETIEALNNPVSCG
                     VFENYEDFKKALQD"
BASE COUNT         1292 a          630 c          698 g         1234 t
ORIGIN      
        1 ataatttttg ttagcattaa gctcacctcc cttctgggcg gtaaattaac gctaaagggt
       61 tgcagccctt tggcgttgca cccttttata attataccaa aaacaaactc tttaacttct
      121 taaaacagtc catgaaaaga ttttactttt tattctttag cactttgttt tttgcacctt
      181 catttttatt tggtgctaca aacatagcta atagcaattt aatttatact tggggttatg
      241 gcgatgtgat gaatgaaatc atgcaagcgg ttaaaggtat aaccactgaa acagattata
      301 tcgttaatgc agccttagct atttcattat tactttttag tattaaaaaa gcaatggatg
      361 gacaaacaaa ccctgtgttt gaatttggaa aaatgtttat gctttttgct gtagtgtggt
      421 acatgttttt aagggcgcca aatgacaata atcaccgctt catgatacac gatgaggtga
      481 cgagtaaaga ttatgttatt tctcaaattc ctataggcat aggaaaaagc tttgcattga
      541 tgacgcaatt tgagaaggtt atcctagaag ctatggaaaa acatttcaca actccacaat
      601 ctacaaattt ttctaatgca ggtttaggtt tttcacttca agtaatgagt actttaccaa
      661 atgtaaagct ttcggctatt gatgcaactt tacaaaaaaa tattgatttt tattttagaa
      721 actgcgtttc agtaggtatc ttgcttaatc aacaaggtag aaatcttttt caaaattctg
      781 ataatttaat gcaagatctt ttcacaaaca taggcaatgg ctctcagctt actcctttgt
      841 ttgaaaataa caataatatt gaaaaacaaa gtgttgtgcc ttgttctgat gcaggtcctc
      901 aaatcgttga aatgattaaa aacgatacag atgaagctat gaagattcat gctgctttgc
      961 ttggtatggc gaatgatatg gcaaattatg agcaaaagtt cttaggcgct gcacaaatct
     1021 ataacgaaca agctgtaagt gctagatctt atttgcaaca atccatgata atgcttgctt
     1081 ctcaagatgc aatcattaat accgctaaat cagtaggttt aaatcctgct tctgtggctg
     1141 caaatactgc ttatgcggat cagcaatttt atgcaagtat gcaagcacaa ggacacttgg
     1201 cacaaactta tttgccttta gctaaagctt atttaacagc tattattata ggtttatctt
     1261 ggcttgttgc tttgctttct attgtatttg gctcttacgc tcatattaaa atgtttttta
     1321 ctctatgtat ttggatagta ctttggactc ctatactttg tattattaat tttctaaatg
     1381 attttaatct tatgaaagtc gcacaagtaa taacaggtgg aaaagcagct ttaagcttag
     1441 gagataacat tcttatattt aaagaagtag caagtagatc aaatttcatg aattatcttg
     1501 taatgagtac tcctgtttta gcttatgcta tagctaaagc aagtgagcaa ggatttgtaa
     1561 cttttgcttc tggattatct caagctctaa caggtgcttc aagagctgca ggaagttttg
     1621 caaatcagca agccttatct acacaaacta gcattgctgc tcctagagga gatgaagttt
     1681 gggcaatgaa tgcaggtgtg gtaagtttgc aaagtgctat gagtgcaggg ggtggtagat
     1741 ttagtatgtc tgcgataaca ggcggtggaa caacagttaa agatgtgaat acaaatacaa
     1801 attttgcatt aggaagtaat ggtgaaatta caaatatgag cattgcggga cttgatgcaa
     1861 aacatgcaca aagtgaaacc caaactagac aagattcgct tgctaattct attgccgata
     1921 ctcataaaac aggcattaat caaggtatta cttctaacta ccttagaaat catggcgcag
     1981 gagttgaaga tactaaagca attgagaaag cagaagcaca agctttaaga gagactatga
     2041 gcgaagtgtt gggcgataaa tctagcttca atgaagcaga taaaaaagct ttagaaggaa
     2101 gcgttggtgc ttatgctagt ggctcagcag ggcttgaaat ctttggaagc ggtggaaaaa
     2161 taggtggaga aattaaaggg acagcttcaa taggcacagg ctcaactgaa acacaagaat
     2221 attcaagaag cttaagcaaa gaaggacagg ctgcatttga taaaatgtat gctgaaaaac
     2281 ttggcaatat cattaaatct agtgatagtg tggcttctgc ttattctaat gctctatcca
     2341 caagcacagg gagtgaattt gccgatgcta aacaaaaagc acattcttat agtgaagcaa
     2401 gtcaatacag tgaagctatt caaacaagta atttacctaa tatggctgaa aattacattg
     2461 ctgaaaataa tttgggcgga actagagaac aacaagttgc tgctgcagct aaagggttag
     2521 aaaacttagc cgcaagggga gatttgcaag gcttgttgca ctatgctaat atgaatacag
     2581 ctaagccaaa tgccgatgga attcatgatg ttagcaataa atcttattac agtccttcaa
     2641 gcgtaggggc taacaatgct cataataatg atacagtagc taatcaaaat agtttaaata
     2701 acttaggaac agcaggggga aataatataa gaaatgaatt cagtcagcaa agtggagctg
     2761 ctataagtaa tttcaaaaac caaggaacaa gcacttctaa tgtggttaat aatagcgcta
     2821 aagatgccat agcagaacaa aatgctaaca ggagaatggg agtaaatcct agctcttatg
     2881 caatacaaga tgcaagcaaa tcaggtaatg agcttgcaaa agaagctcaa ggcttgtttg
     2941 atgctatgag taaaaaataa gtctagcttt ttagctaggc ttagttatct cgtatagcac
     3001 cgaatatata atcaaattta taactcatgc aattttactt gtcggaatgc aaagcttcgc
     3061 catctattcc atgtatactc atagaatatc ctgtagcgta accgtctaaa aattcagaga
     3121 agtgtgtgtt attatcactt ctatatcccc catgcttttt ctcatcatag ggaactattt
     3181 ttatattttt agcaaggaat aatacaaaag caattacaag gctagataca gataaaagcc
     3241 ctaaaatacc tataaagcta gtgataattt ttaaatatac caaaagcaaa acaatagctg
     3301 caactccgca agaaagccaa agagtaagta tgagtttttc ggttgtagtc atttttgatt
     3361 ttttaagttt tacttctact ttatccatct ttattccttt caatattttt taaataagtc
     3421 ttgatgcctt cctatgcgat aaagacttaa aattttatca tctcttttat agataataac
     3481 cagatctcca aatatatgac attctctaaa atctttaaac tcacctttta aagcgtgatc
     3541 tttgagtctt gtaggtaaaa catctaagtt cattaaacat tgaataacat catcaattgt
     3601 gtttaaatcc caagactgct ttttaacttt ctcatagtct tttttaaaac ttcttaaaag
     3661 attaattttt cgcatttagt cttgcaatgc ttttttaaaa tcttcgtaat tctcaaaaac
     3721 cccacaactt acaggattgt ttaaagcttc tattgtttcc cctgaaggaa tttcttgttc
     3781 tatttcaagt gttgcttttg gagaaagact tactatgctt tgtacagctt ttaataattt
     3841 ttcatccgca ttat
//
LOCUS       DARAII010000151         3831 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.153, whole genome shotgun sequence.
ACCESSION   DARAII010000151 DARAII010000000
VERSION     DARAII010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3831)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3831)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3831
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.153"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1208)
                     /locus_tag="SB143_001864"
     CDS             complement(<1..1208)
                     /locus_tag="SB143_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEF9750360.1"
                     /translation="MFRLSSVSSKLLLSVAISIIVAIALIIAIVSFQVASYSEKEAKN
                     AILLSSKRYVNYIQGILNEEVTLTKVVATSLNEMFQNNDHVDIDLIESLIKNAFDSSH
                     YAAYTFLYLKDTTVLSDMQNVDKKYISPDGKTFSMIFFDQIAEKSGGITTISTPNNFS
                     QLNLIQNIEQNVKYGDKDSVFVGSPRKLNYDNNEFLGINFGMPIFNNKGKFIGVIGYT
                     LDLLEISEIILDPKFDFFEGDLRILMNDQGIIAVHKIKNGILKTLFDINKDQSAQLIV
                     EAVKNHKDEILDNYIASTGDPSYASISSFSTLGNSSHWSVIVTAPKKSVLAPLYKLQY
                     TIISVAIIALIAILTVVYFFTRKIIGSRIPLILKSLENFFRFLNHEKIEIQTIEIKAN
                     DELGKMGKII"
     gene            complement(1321..1830)
                     /locus_tag="SB143_001865"
     CDS             complement(1321..1830)
                     /locus_tag="SB143_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEF9750361.1"
                     /translation="MQFTIFHILAFVILLLCFVLVCILIFLKVKQKEFALISYTIATI
                     FTALLIYSVFLTINQFTTQASLSKLTFSRDLRHESIIITGRVQNLTKFNIRKCYLMLS
                     ILNKKRVGGEIFEEKNVRNAKMQNTSVSYTIEIIDTLPGNTYKEFRVSVPFPPSFNNP
                     EFYHTLKCI"
     gene            complement(1830..2360)
                     /locus_tag="SB143_001866"
     CDS             complement(1830..2360)
                     /locus_tag="SB143_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEF9750362.1"
                     /translation="MERLKEIVHFYTTHLYLVDYMLILFVFFLFTCVLLLCIFLRHKP
                     VAALLIIALNIIICFLIYTYGYKFIDSEVRSRKTTIVEQKFIQSSEALIIDFNITNTS
                     KNDFKQCKVIARIFKDKLPEDNLINEYKNQLIPFRQKSREIFNLKKNTTQFQRISFDN
                     FNYDNNYTIRLNSECF"
     gene            complement(2371..3453)
                     /locus_tag="SB143_001867"
     CDS             complement(2371..3453)
                     /locus_tag="SB143_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEF9750363.1"
                     /translation="MPADLNDYFNKKNGNSNNNNNRQNFNFKAPEFNFKGFGKFSPFV
                     YGVIIIVLFLIIAKPFMVINSGEMGIKSTTGRYDPNPLEPGLHFFIPFIQKITTIDTR
                     VRQINYASIEGSNENLTSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQTIA
                     TWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNAIATQIEEGIRKTIEAQPNEPV
                     ELRAVQLREIILPLKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEANAT
                     IISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAKIF
                     LTPGGAVPNIWVDTKDAKKQSSTNMN"
     gene            complement(3469..>3831)
                     /locus_tag="SB143_001868"
     CDS             complement(3469..>3831)
                     /locus_tag="SB143_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEF9750364.1"
                     /translation="DEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSITQDTVLKIAH
                     DLGLTVLRQRISRDEVYTADEAFFTGTAAEITPINNVDARIIGSGIRGSITKKLQDAY
                     FDVVYGRNEKYASMLTYI"
BASE COUNT         1303 a          589 c          546 g         1393 t
ORIGIN      
        1 ttgataattt tacccatttt gcctaattca tcattagctt taatttcaat tgtctgaatt
       61 tctatttttt catgatttaa aaagcgaaag aaattttcca aagacttaag tataagagga
      121 attctagagc ctatgatttt tcttgtaaaa aagtacacaa cagtcaaaat agcaattagt
      181 gctattatag caacactaat aatagtatat tgtagtttat ataaaggggc taaaactgat
      241 tttttaggag ctgttacaat tacactccaa tgactagaat tacctaaagt gctaaatgaa
      301 gagatactag cataactagg atctcctgtt gaggcaatat aattatctaa gatttcatct
      361 ttatggtttt taaccgcctc aacaattaat tgagcagatt gatctttgtt aatatcaaat
      421 aaagttttta aaattccatt tttaatttta tgaacagcaa taataccctg atcgttcatt
      481 aagattctta gatccccttc aaaaaagtcg aattttggat ccaatataat ctcggaaatt
      541 tctagtaaat ctagagtata tcctataact ccaataaatt tacccttatt gttaaaaata
      601 ggcataccga aatttatacc taaaaattca ttattatcat aattaagttt tctaggagaa
      661 cctacaaaaa cagagtcttt atctccatat tttacatttt gttcgatatt ttgtattaga
      721 tttaattgag agaaattgtt tggagttgaa atagtagtta ttccaccaga tttttctgct
      781 atttgatcaa aaaatatcat agaaaaagtt tttccatctg ggctaatata ttttttatct
      841 acattctgca tatcacttaa tacagtagta tcttttaaat agagaaatgt atatgctgca
      901 tagtgactac tatcaaaagc attttttata agactttcaa ttaaatcgat atctacatga
      961 tcattatttt gaaacatttc atttaacgat gtagcaacta ctttggttag tgtgacttct
     1021 tcatttaaga taccttgtat ataattcaca tatctttttg aagataataa aatagcattt
     1081 ttggcttctt tttctgaata tgaagcaact tgaaaagaaa caatagcaat tataagagct
     1141 atagctacaa taatactaat agcaactgat aataagagtt tcgaactaac gctagatagt
     1201 ctaaacatga aaaacctcac ataaattttt tactaaaaat aaatttcgtt agcatatcaa
     1261 aaaaaaataa aattaatata aaattatttt ttatagatgt tttaaaacta tttaacaata
     1321 tcaaatacat tttaaggtgt gataaaattc aggattatta aaacttggag gaaaaggaac
     1381 gctaactcta aattctttat aggtattacc cgggagtgtg tctatgattt ctatagtata
     1441 agaaacactt gtattttgca tcttggcatt gcgcacattt ttttcctcaa aaatttcccc
     1501 tccaactcgc tttttattta gtatgcttag cattaaatag catttacgaa tattaaattt
     1561 ggtaagattt tgcactcttc ctgtaataat aatactttca tgtcttaaat ctctagaaaa
     1621 ggtaagtttg ctaagactag cttgggttgt gaattgattg atagtgagaa atacagaata
     1681 aattaaaagt gcggtgaaaa tggtcgcgat agtataggaa ataagagcaa attctttttg
     1741 cttcactttt aaaaaaatta aaatacaaac taaaacaaag caaagaagca agataacaaa
     1801 agccaaaata tgaaaaattg taaattgcat taaaaacact ccgaattgag gcgtatggtg
     1861 taattattgt catagttgaa attatcaaaa gaaattcttt gaaattgagt tgtatttttt
     1921 ttcagattaa aaatttccct gcttttttgc ctaaagggaa tgagttgatt tttatattca
     1981 ttgatgagat tatcttcggg taatttatcc ttgaaaattc tagcaatcac tttacattgt
     2041 ttaaagtcgt ttttagaagt atttgtgata ttaaaatcaa taattaaagc ttcagagctt
     2101 tggatgaatt tttgttctac aatggttgtt tttctactcc ttacttcgct atctatgaat
     2161 ttatatccat atgtataaat caaaaaacaa ataattatat taagtgcgat gatcaaaagg
     2221 gccgccacag gtttgtggcg taaaaagata cacaagagta gaacgcaagt aaagaggaaa
     2281 aagacaaata aaatcagcat ataatccact aaatataagt gagtagtgta aaaatgcaca
     2341 atttctttta gtctttccac cttgtatatc ctagttcatg ttagtagaac tttgtttttt
     2401 agcatcctta gtatccaccc aaatatttgg tactgctcca ccaggagtta agaaaatttt
     2461 agcatcttga ttgactttca aggcttcatt aaattctttt tgggtttcaa tttgttttaa
     2521 gttaagcaaa ggagtattta aactattcgc aatttcttta ttagaataag cttgcgcatc
     2581 tgcttctatt tttacagcca ttgctttacc tttagcactg atgatggttg catttgcttc
     2641 cccttcagcc aaagcagctt tttttaaagc ttcttgattt gctctttcta cctcatattt
     2701 agttctttct gcttcttgtt ttgcaatttg cacgcgttca atttgctctt ttactttcaa
     2761 aggcaatata atttctctaa gttgaaccgc acgaagttcc actggctcat taggttgtgc
     2821 ttctatggtt tttcttatcc cttcttcgat ttgagttgcg attgcattac gatttgttgg
     2881 caattcttca gcagtatatt ttcctacaac acttcgaacc acatcacgca ccacaggatc
     2941 tatgatttta ttttcccaat ttaaactcca agttgctata gtttgaggaa cttgtaaagg
     3001 atttaagcgg tattgaactg ttacatcaat agaaacaggc aagccgcgtg aatcaagcac
     3061 agaaatgctg tttttattaa ttacacctga acctgaagtt aaattttcat tacttccttc
     3121 tatagaagca taattgattt gtcttactct cgtatcaatt gtagttattt tttgtataaa
     3181 aggtataaaa aaatggagtc ctggctctaa aggatttggg tcgtatctac ctgtagtgga
     3241 tttaatcccc atttctccag aatttatcac cataaaaggt tttgcgataa ttaaaaacaa
     3301 aacaataata attacaccat aaacaaaagg agaaaatttt ccaaaaccct tgaaattaaa
     3361 ttcaggagct ttgaaattga aattttgtcg gttgttattg ttattagaat ttccattttt
     3421 tttattgaaa taatcattca aatcagctgg catttatttc ctttatcttt aaatataagt
     3481 tagcatagat gcgtattttt cattgcgtcc ataaactaca tcaaaataag catcttgaag
     3541 ttttttagta atagaacctc ttataccact gcctataatt cttgcatcaa cattattaat
     3601 aggagtgatt tctgcagcag ttccagtaaa aaatgcttca tcagcagtat aaacttcatc
     3661 tcttgaaatt ctttgacgaa gtacagttaa accaagatcg tgagcgattt taagaactgt
     3721 gtcttgagtg atacttttta aagaaaaatc attaggtgga gtgattaaaa ctccatcttt
     3781 tacgatgaaa aaacattctc ctgtaccttc tgctataaaa ccctcttcat c
//
LOCUS       DARAII010000152         3823 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.154, whole genome shotgun sequence.
ACCESSION   DARAII010000152 DARAII010000000
VERSION     DARAII010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3823
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.154"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..216
                     /locus_tag="SB143_001869"
     CDS             <1..216
                     /locus_tag="SB143_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEF9750365.1"
                     /translation="NLRFNCVTPGFIKSDMTEILSDEIKQAYQDNIPLKRFAEPEEVA
                     NCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            226..633
                     /locus_tag="SB143_001870"
     CDS             226..633
                     /locus_tag="SB143_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEF9750366.1"
                     /translation="MDLKEIEQFLDENTPAFLATLGTCGNPRVRPMQSPLLVGDRIYF
                     GTSNNKGLFKHIQNYNGIEFCSCSREGVFLRLRANAVFEPNAKVKELMFEKYPHLVSL
                     YENPQNSRFEVFYLDNLSAKMQFPNGDFKLYKA"
     gene            complement(653..1318)
                     /gene="tenA"
                     /locus_tag="SB143_001871"
     CDS             complement(653..1318)
                     /gene="tenA"
                     /locus_tag="SB143_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEF9750367.1"
                     /translation="MLFSRLIETNSHIWDEYLHHEFVKKLENGNLKEENFLFYLKQDY
                     IYLIHYAKCYARLALNAKNAEELRFAMKFQNYIIEGEIELHKSILKLGINADKLNVKD
                     ESLTNIAYTRYMLSVGESGDFLDMLVALSACAIGYGYIGAEIYKRLGKEKLQNHPYKE
                     WILTYSSDEFQSEIKEFEDFLNSYTQQISQEKFENLSEIFYNVVRLENAFWEHALQMK
                     MDI"
     gene            1432..1665
                     /gene="acpP"
                     /locus_tag="SB143_001872"
     CDS             1432..1665
                     /gene="acpP"
                     /locus_tag="SB143_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEF9750368.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIENLKK"
     gene            1699..2913
                     /locus_tag="SB143_001873"
     CDS             1699..2913
                     /locus_tag="SB143_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEF9750369.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICEGKSGVKKITLFDTTDF
                     PVQIAAEIENFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDANFDQNLDKEEFGVVS
                     AAGIGGLPNIEKNSVICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNANKMLVIGAEAAICPVGIGGFASMKALSTRNDDPAHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGAKIYAELVGFGESADAHHITSPTLDGPL
                     RAMKKALKMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGSEIPAVSSTKGQTGHCL
                     GAAGAIEAVISIMALDNGIMPPTINQFVSDEECDLDYIPNEARKADLRVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            2915..>3823
                     /gene="accA"
                     /locus_tag="SB143_001874"
     CDS             2915..>3823
                     /gene="accA"
                     /locus_tag="SB143_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEF9750370.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVAILKKNLEKEIAKT
                     YKNLSDFGRLQLARHPDRPYALDYIDLILNDAYEIHGDRAFRDDPAIVCFMGYLGEKK
                     LIVIGEQKGRGTKEKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGL
                     GAEERGQSEAIATNLYELSDLKTPTIAVVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPSKSEAATKAMKVTADDLKSQGLIDDVIEEPINGAHRNKEAAAVAI
                     ADYVKKALDELEKIDPRELASNRMQKI"
BASE COUNT         1282 a          524 c          754 g         1263 t
ORIGIN      
        1 aatttgcgtt ttaattgtgt tactccaggc tttattaaaa gtgatatgac agagatttta
       61 agcgatgaaa tcaaacaagc atatcaagat aatatccctt taaaacgctt tgcagaacct
      121 gaagaagttg caaattgtgt agcattttta ttaagtgatt atgcttctta tgtgacaggt
      181 gatgtgctta aaattaatgg cggattatat atgtaaggaa agtatatgga cttaaaagaa
      241 attgaacaat ttttagatga aaatactcct gcgtttttgg caactttagg aacttgtgga
      301 aatcctaggg ttcgtcctat gcagagccct ttacttgtag gagatagaat ttattttggt
      361 acttctaata ataaaggact ttttaagcat atacaaaatt ataatggtat tgaattttgt
      421 tcttgttcta gagagggcgt ttttttaaga cttagagcaa atgcagtttt tgaacctaac
      481 gcaaaagtta aagagctgat gtttgaaaaa tatcctcatc ttgtaagcct ttatgagaat
      541 ccacaaaatt ctagatttga agttttttat cttgataatt taagtgctaa aatgcagttt
      601 ccaaacggag attttaaact ttataaagct taaagcaagg attttccttg ctttaaatat
      661 ccattttcat ttgtaaagca tgttcccaaa aagcattttc taaacgcact acattataaa
      721 aaatttcgct aagattttca aatttttctt gagatatttg ttgagtataa gaatttaaaa
      781 agtcttcaaa ttctttaatt tcactttgaa attcatctga actataggtt aaaatccatt
      841 ctttataagg gtgattttga agtttttcct tgccaagtct tttataaatt tcagctccta
      901 tataaccata acctatggca caagcactta aagccactaa catatctaaa aaatctccac
      961 tttcacccac gcttaacata tagcgtgtgt aagctatatt ggtcaaactt tcatctttaa
     1021 catttaattt atcagcattg atgccaagtt ttaaaatact tttatgaagt tcaatttctc
     1081 cttctataat gtagttttga aatttcattg caaagcgtag ttcttcggca ttttttgcat
     1141 ttaaggcaag tcgtgcatag catttagcat aatggatgag atagatataa tcttgtttga
     1201 gataaaaaag aaaattttct tcttttaaat ttccattttc taattttttt acaaattcat
     1261 gatgtaaata ttcatcccaa atgtgtgaat ttgtttcaat aagtcgagaa aaaagcattt
     1321 cttactccta aaattcaatg gttttttaaa gtatagtcaa aaactataaa tattttaagt
     1381 tttttattgt aaaatacgct ttattttaat ttttatcaag gagatatata aatggcaaca
     1441 tttgatgatg taaaagcagt ggtagtagag caattaagca ttgatgcgga tgctgttaag
     1501 atggaatcaa aaatcattga agatttaggt gcagattctt tggatgttgt agagcttatt
     1561 atggcattag aagaaaaatt cgaagtagaa atcccagata gtgatgctga aaaactaatt
     1621 aaaattgagg atgttgtaaa ttatatcgaa aatcttaaaa aataatttaa aaaaattcac
     1681 tttacaagga gcttgttctt gaaaagagtt gtagtaacag gtattggtat gatcaatgcc
     1741 ttgggtttag ataaagaaag ttcttttaag gcgatttgtg aaggtaagag tggtgtgaaa
     1801 aaaatcactc tttttgatac tacagacttt ccggttcaaa ttgcagcaga aattgaaaat
     1861 ttcgatcctc tagaagtagt tgacggtaaa gaggttaaaa aaattgatcg ttttattcaa
     1921 ttgggcatta aagctgctcg cgaagcaatg caagatgcta attttgatca aaatttagac
     1981 aaagaagaat ttggagttgt ttcagctgcg ggaattggag gtctgccaaa tatagaaaag
     2041 aattcggtta tttgttctga acgtggccct cgtaaaattt ctccattttt tataccttca
     2101 gctttagtaa atatgttagg cggtttaatt tctatagaac acggacttaa aggacctaat
     2161 atttcttgtg taacggcttg tgcagcagga actcatgcta taggggaagc atataaaagt
     2221 atagctttag gtaatgctaa caaaatgttg gtaattggcg cagaagctgc tatttgtcct
     2281 gtaggaattg gcggttttgc ttcaatgaaa gctctttcta ctagaaatga tgatcctgct
     2341 catgcttcaa gaccttttga taaagaaaga gatggttttg taatgggaga gggtgcaggc
     2401 gctttggttt ttgaagagta tgaagaggct aaaaagcgtg gggctaagat ttatgctgaa
     2461 ttggttggtt ttggagaaag tgctgatgcg catcacatta cctcacctac attagatgga
     2521 cctttaagag cgatgaaaaa agccttaaaa atggcaggaa atccaaaggt agattatatt
     2581 aatgcacatg gaacttcaac gcccgtaaat gacaaaaatg aaacagctgc aattaaagag
     2641 ctttttggaa gtgaaattcc agcggttagc tcaacaaaag gacaaacagg gcattgtttg
     2701 ggtgctgcag gagctattga agcggttatt agcatcatgg cattagacaa tggaattatg
     2761 ccacctacta ttaatcaatt tgttagcgat gaagaatgtg atttagatta tataccaaat
     2821 gaggccagaa aagcggattt aagagttgtg atgagtaatt cttttggctt tggcggcaca
     2881 aatggttgcg tggtatttaa aaaagtagat tgatatggct tcgtatttag attttgaaaa
     2941 aaatattcag caaattgatg aagatattat caatgctcaa attaagggtg ataccgaggc
     3001 tgttgctata cttaaaaaaa atctcgaaaa agaaattgct aaaacttata aaaatttaag
     3061 cgattttgga cgcttgcaac tcgctcgtca tccagatcgc ccttatgcac ttgattatat
     3121 agatcttatt ttaaatgatg cttatgaaat tcacggagat cgtgctttta gagatgatcc
     3181 tgctattgtt tgttttatgg ggtatttagg agaaaaaaaa cttatagtta taggagaaca
     3241 aaaaggacgt ggcacaaaag aaaagatcgc tagaaatttt ggtatgcctc atcctgaagg
     3301 ttatagaaaa gctttaagag tggcaagact tgcagagaaa tttcaaattc ctattttgtt
     3361 tttgatagat accccgggtg cttatccagg tttgggagca gaagaacgtg gtcaaagtga
     3421 agctattgct acaaatttgt atgaacttag cgatttaaaa actcctacta tagctgtggt
     3481 tataggagaa ggaggaagtg gtggagcttt ggctataggt gtggctgata agcttgcaat
     3541 gatgaaaaat tcagtttttt ctgtcatttc tcctgagggt tgtgcagcta tactttggaa
     3601 tgatccttct aaaagtgaag cagcaacaaa agctatgaaa gttactgcag acgatttaaa
     3661 aagtcaaggc ttaattgatg atgtgattga agagcctatc aacggagccc atcgcaataa
     3721 agaagctgct gctgttgcta tagctgatta tgttaaaaaa gccttggatg aattagaaaa
     3781 aatagatccg cgagaacttg cttcaaatcg catgcaaaaa att
//
LOCUS       DARAII010000153         3806 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.155, whole genome shotgun sequence.
ACCESSION   DARAII010000153 DARAII010000000
VERSION     DARAII010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3806
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.155"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(33..109)
                     /locus_tag="SB143_001875"
     tRNA            complement(33..109)
                     /locus_tag="SB143_001875"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(73..75),aa:Ile,seq:cat)
     gene            complement(160..1260)
                     /locus_tag="SB143_001876"
     CDS             complement(160..1260)
                     /locus_tag="SB143_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEF9750371.1"
                     /translation="MFIPDRRILTHFDYMQPILFVPIILISFFLIFEANAFLAEKQFV
                     YACVGIAAFSVFFLLPIRKLMWLIPIAYWVNIFLLLSTDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQDPPPKNGYKLKQFLKLSFFIILPFLLIAQEPDLGS
                     AMVLLIVGFGVLFIMGVHYKIWLSIIIAIGISSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLIGKSQDEATQTHFNFLPISTSDFIFAYLIERFGFLGGFVLILL
                     YTLLIFHLLSLNQKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWVDNKNK"
     gene            1339..2304
                     /locus_tag="SB143_001877"
     CDS             1339..2304
                     /locus_tag="SB143_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEF9750372.1"
                     /translation="MQTFLVDEPSRLDIFLAKNLQQSRNQIASMIEKNCVWVNDKIQN
                     KNSFKLKVGDKLVLNLPLVEEAKPKFDIDFDIEILYEDEDLLVLNKPSNLVVHGAKSV
                     KSATLVDWLIEKQYTLSTLGGEVRAGLVHRLDKETSGAILIAKNNFTHQKLSEQLSDK
                     TMGRIYLALIDLPLKEDKIIIDKALIRSSANAIKKIVTNSFVKGSKEAKSAFVNLAKS
                     EEVSLIGAKLFTGRTHQIRAHLASINRHILGDELYGYRGKYECRIMLHAYFLYFIHPR
                     NGEKIFIQAPLMDDFKQILEKKFILGELNEKISLESLLGCFDSFI"
     gene            2252..3484
                     /locus_tag="SB143_001878"
     CDS             2252..3484
                     /locus_tag="SB143_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEF9750373.1"
                     /translation="MKKFHLSLCLGALTLLFSACSVSQLSNIGSNKELLVNESLPKIN
                     NLKSLSDISNIAFEWDPLYDDNIKGFYLYRSNDANPEFKLVGTIKNKFQTHYVDAKLE
                     PNTKYYYMMRSFNDQGHISEDGKVIEVKTMPRLEAIPFAQAITNLPSRIKLIWRPHPD
                     PRVASYIIERAKADGQEFKKIAEVKNRLNAEFIDEDLKPEESFNYRIIAVGFDGVQSQ
                     PSSILNSTSKALPPQVEHLNASLDGANKVVLTWDAPKYKDFSYYKVYSTSSSFLPYTL
                     LAKTEQNSYEDIVEGAAKSKYYKVTMVDIDELESPMPKDGVEGKTLGIPSSPSIILAQ
                     STSDGIDLEWVDNDSRAVEYEVRRYGGDQNAIFKGVKEKRLKDIKALPGVEYSYEVIA
                     IDSVGLRSEPSKKVKAKQ"
     gene            3484..>3806
                     /locus_tag="SB143_001879"
     CDS             3484..>3806
                     /locus_tag="SB143_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEF9750374.1"
                     /translation="MPNFKTRKLKEIILPFEKDGVEFVWMAHNDNVNLIYTRVEEESF
                     FLQIKKGENEFVVKVDKHTKPSKIAYLHKALYIFKQYFCEDVISEAFGIKNNALAEKT
                     PLIAN"
BASE COUNT         1401 a          537 c          713 g         1155 t
ORIGIN      
        1 gattgcttgg gataatttca gaaaagaagt aatggtggat ttagcaggac tcgaacctgc
       61 gaccaaccgg ttatgagccg gttgctctaa ccaactgagc tataaatccg ccttaatttt
      121 taaagataaa attatatctt atttttgctt aaaattattt tatttatttt tattgtctac
      181 ccaaaagtat ctaaaggtaa tcaaatgctg taaaattcca aagaaaatca taaaaatcgt
      241 aaaagaactt ccaccatagc taaaaaaagg caaagggata ccaacaacag gcgcaaaccc
      301 tatagtcatc gaaatattta ccgcagcata aataaaaata aacaatgcta cgcagtttat
      361 agcaactcta gcaaaataat catccttaag cttttgattt aagcttagta aatgaaagat
      421 gagtagagta taaagtaaaa tcaatacaaa tccccccaaa aagccaaatc tttctataag
      481 atatgcaaag ataaaatcac ttgtagagat aggcaaaaag ttaaaatgcg tttgtgtagc
      541 ttcatcttga gattttccta taaggccgcc attgcctatg gctatcatgg attgtgcgac
      601 ttgatagctt ggtttttcgg agataaaatc atgaattctt tgtttttggt agggctttaa
      661 caaatgcgta taaatgatgg gagagcttat accgatggcg atgatgatac taagccaaat
      721 tttataatgc acacccatga taaaaagcac gccaaaacct acgattaaaa gcaccatagc
      781 acttcctaaa tcaggctctt gagcgatcaa taaaaaaggc aaaatgataa aaaaactaag
      841 ctttagaaat tgttttagtt tatagccatt tttaggcggt ggatcttgat agatgagata
      901 agcaagcatt aaaataaaac taggtttaaa aatttcagag ggctggatgg taaaatgagt
      961 aaaaggaatt tcaagccatc ttttagcacc caacttttca acaccaaaaa tatctgtact
     1021 taaaagcaaa aagatattga cccaataagc tatgggtata agccacatca gtttgcgaat
     1081 aggcaataaa aagaatacgc taaatgcggc aattcctaca caggcataga caaattgttt
     1141 ttcggctaaa aaagcattgg cttcaaagat taaaaaaaac gaaattaaaa taataggtac
     1201 aaacaaaata ggttgcatat aatcaaaatg tgttaaaatt cttctatcag gtataaacaa
     1261 aatttgcctt caatttgtag tattaaaata taattataaa ataaaactct aaattatata
     1321 aaattttata aggaaaaaat gcaaactttt ttggttgatg aaccttcaag gctcgatatt
     1381 tttttagcta aaaatcttca gcaaagtcgc aatcaaatag cctcgatgat agaaaaaaac
     1441 tgcgtttggg ttaatgataa aattcaaaat aaaaattcat tcaagttaaa agtcggagat
     1501 aaacttgttt taaatttgcc acttgtagag gaagctaagc ctaaatttga tatagatttt
     1561 gatatagaaa ttttatacga agatgaggat ttgttggttt taaataaacc ttcaaatttg
     1621 gttgttcatg gagcaaaaag tgttaagagt gcgactttgg tggattggct tatagaaaaa
     1681 caatacaccc tttctacctt aggcggagaa gtgcgcgcag ggcttgttca taggcttgat
     1741 aaggaaacaa gcggagctat attgatagca aaaaataatt ttactcatca aaagcttagt
     1801 gagcagctta gtgataaaac tatgggaaga atttatcttg cgttaattga tttgccacta
     1861 aaagaggata aaattatcat agataaagct ttgattcgat ccagtgctaa tgctattaaa
     1921 aaaatagtta caaatagctt tgttaagggt tctaaggagg ctaaaagtgc ttttgttaac
     1981 ttggcaaaaa gcgaggaagt gagtcttatt ggggctaagc tttttacggg tagaacgcat
     2041 caaattagag cacatttagc tagcataaat cgtcatattt taggagatga attatatggc
     2101 tataggggga aatacgagtg taggattatg ctgcatgcgt attttttgta tttcattcat
     2161 cctagaaatg gagaaaaaat atttatccaa gctccattaa tggacgattt taaacaaatt
     2221 ttagaaaaaa aatttatttt aggagagctt aatgaaaaaa tttcacttga gtctttgctt
     2281 gggtgctttg actcttttat ttagtgcttg cagtgtttcg caactttcta atataggttc
     2341 aaataaagaa cttttagtca atgaaagctt gccaaagatt aacaatctta aaagtcttag
     2401 tgatattagc aatatagcgt ttgaatggga tcctttatat gatgataata tcaaaggatt
     2461 ttatttatat cgctcaaatg atgcaaatcc tgaatttaaa cttgtaggaa cgattaaaaa
     2521 taaatttcaa acccattatg tagatgctaa gcttgagcca aatacaaaat attactatat
     2581 gatgagaagt tttaatgatc aaggtcatat ttcagaagat ggaaaggtga ttgaagtaaa
     2641 aactatgcca agattagagg ctattccttt tgcacaagct atcaccaatc taccaagccg
     2701 aattaaattg atttggcgtc cacatccaga tccaagagtt gcttcttata tcatagaaag
     2761 agctaaggca gatggacaag aatttaaaaa aattgccgag gtgaaaaatc gcttgaatgc
     2821 tgaatttata gatgaggatt taaaaccgga ggagagtttt aattatagaa ttattgctgt
     2881 tggatttgat ggggtgcaaa gccagccaag ttctatttta aattctacaa gcaaggcctt
     2941 acctcctcaa gttgagcatt taaatgcgag cttagatgga gccaataaag tagttttgac
     3001 atgggacgct cctaaataca aagatttttc gtattataaa gtttattcta caagttcaag
     3061 ttttcttcct tacactcttt tggctaaaac cgagcaaaat tcttatgaag atatagttga
     3121 aggtgctgca aagagtaaat actataaagt aaccatggta gatatagacg agcttgaaag
     3181 tcctatgcct aaagatgggg tagagggtaa aactttagga attccatctt ctcctagtat
     3241 tattttggct caaagtacga gtgatggtat tgatttagaa tgggtggata atgactcaag
     3301 agcggttgaa tacgaagtta gacgctatgg cggtgatcaa aatgctattt ttaagggtgt
     3361 aaaagaaaaa agattaaaag atattaaagc tttaccgggt gtagaatata gctatgaagt
     3421 gatagcgatt gattctgttg gtcttcgttc agagccttca aagaaagtta aggcgaagca
     3481 atagtgccaa attttaaaac tagaaaactt aaagaaatca ttctaccctt tgaaaaagat
     3541 ggggtagaat ttgtgtggat ggcacataat gataatgtga atttaatcta cacaagggtc
     3601 gaggaagaaa gcttttttct acagattaaa aaaggagaaa atgaatttgt agttaaggta
     3661 gataagcata ccaaaccttc taaaatagcc tatttacata aggctttata tatttttaag
     3721 caatattttt gcgaggatgt tatcagcgag gcttttggta taaaaaataa tgctttagcc
     3781 gaaaaaactc ctttgattgc taatga
//
LOCUS       DARAII010000154         3727 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.156, whole genome shotgun sequence.
ACCESSION   DARAII010000154 DARAII010000000
VERSION     DARAII010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3727
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.156"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..804
                     /locus_tag="SB143_001880"
     CDS             <1..804
                     /locus_tag="SB143_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="back-translocating Elongation Factor EF4; binds to
                     the ribosome on the universally-conserved alpha-sarcin
                     loop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEF9750375.1"
                     /translation="TSLALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYE
                     IYQTDGELIKIQNPSELPPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVK
                     MDYITPERVLLEYDVPLNEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVA
                     GENVDALSIIVPNEKAQNKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMG
                     KNVTAKCYGGDITRKRKLLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            895..1539
                     /locus_tag="SB143_001881"
     CDS             895..1539
                     /locus_tag="SB143_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750376.1"
                     /translation="MNKKILFFIALALFLNACASKQNTFTQVNQLSKASQCVPCESSS
                     GFEAKIKGLLYVSDIGIQCCANKRTLDTGVALKKVYLHRFYDLKEEQKVLNANGQKLF
                     VNLDFNAIFYVYLKQELEARGIIVLDDNKANSPYVTKIDLAFTGYSAKQDSLGLHSRL
                     VGVLSLSDINKNKKFTLRTKQDVQGFENLKDISFYTHLLIKQMANKAASIISEL"
     gene            1536..2111
                     /locus_tag="SB143_001882"
     CDS             1536..2111
                     /locus_tag="SB143_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEF9750377.1"
                     /translation="MKCLNCGVFTLLCFCHHCAEELSEFSLGVRELEKDFKVYSFYKY
                     HEIKHLLHAKHKFYGYFVFHFLAKLSFFKFKNFFSVNEQINVIPLDDRVENLLYSHSA
                     ILAKYLKTEFIKPIFGALHAQNHLKYSGKSLKFRQDNKRKFKLLKKINNPVILVDDIV
                     SSGSSLLEAKQFLEKNKISVLFAVVLADAKV"
     gene            2151..>3727
                     /locus_tag="SB143_001883"
     CDS             2151..>3727
                     /locus_tag="SB143_001883"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase 4 subunit A"
                     /protein_id="HEF9750378.1"
                     /translation="MENIFNKDSDIELIDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMNDLGVGSRSAYKKSARIVGDVIGKYHPHGDIAVYDALVRMTQDFSMR
                     YPSIDGQGNFGSIDGDGAAAMRYTEARMTILAEELLRDIDKDTVDFVPNYDDSMSEPD
                     VLPARVPNLLLNGSSGIAVGMATNIPPHSLNELVDGLLYLLDHKDASLEDLMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKIRAKTHIEKKSNKDIIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESDREGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLIELLNLFLNHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSPDNTTARDSLVAKFGLTELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLDEILKSETLLENLIRDELKEIKSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYE"
BASE COUNT         1336 a          473 c          704 g         1214 t
ORIGIN      
        1 acctctttag ctttaggttt tggttttagg gtaggatttt tagggctttt acatatggaa
       61 gtaattaaag aaagacttga aagagaattt aatcttgatt taatcgccac agcaccaact
      121 gtaacttatg agatttatca aaccgatgga gagcttataa aaattcaaaa tccaagcgaa
      181 ttaccgccgg tgaataagat cgatcatatc aaagagcctt atgtaaaagc tactatcatt
      241 acccctagtg aatttttagg aaatttaatc actcttttaa atcgaaaaag aggagtgcag
      301 gttaagatgg attatatcac tcctgaacgc gttttattgg aatacgatgt gcctttaaat
      361 gagattgtga tggattttta tgataaatta aagtctttaa caaaaggata tgcgagcttt
      421 gattatgagc ctattgaatt tcgtgtaggg gatttagtaa agcttgatat taaagtagcg
      481 ggtgaaaatg tcgatgcttt aagtattatc gtgccaaatg aaaaagcgca aaataaagga
      541 agagaacttg ttagtgctat gaaggaaata gttcctagac agctttttga agtggccatt
      601 caagcaagca taggcaataa aatcatcgca agagaaacgg ttaagtctat gggtaaaaat
      661 gtaaccgcaa aatgctatgg tggggatatt actagaaaaa gaaagctttt agaaaagcaa
      721 aaagaaggta aaaaaagaat gaaagctata ggtaaggtaa atttacctca agaggctttt
      781 ttgagtgttt taaagataga ttgatgataa atttaaaact tggcttgaaa tttgcttgta
      841 tttttaatac aatttagaaa aatatttttc aaaatatttt ttaaggagaa aaagatgaat
      901 aagaaaattt tattttttat agcattggct ttatttttaa atgcttgtgc gagcaaacaa
      961 aatactttta ctcaagtaaa tcagctttct aaagcttctc agtgtgttcc ttgcgagagt
     1021 tctagtggtt ttgaggcaaa aatcaaaggc cttttatatg ttagcgatat tgggatacaa
     1081 tgttgtgcaa ataaaagaac tttagatacg ggtgtggctc tcaaaaaagt ctacttgcat
     1141 agattttatg atttaaaaga agagcaaaaa gtgcttaatg ccaatgggca aaaattattt
     1201 gtaaatcttg attttaatgc tattttttat gtttatttaa aacaagagct tgaagcaaga
     1261 ggtattatcg tccttgatga taataaagcc aattcacctt atgtaactaa aattgatctt
     1321 gcttttacgg gttatagtgc aaaacaagat agtctaggac ttcattcaag acttgttgga
     1381 gtattaagct tgagtgatat taataaaaat aaaaaattca ctttacgcac caaacaagat
     1441 gttcaaggtt ttgaaaattt aaaagatatc agtttttaca cacatttact gattaaacag
     1501 atggcaaata aagcagcaag cataatctca gagctttgaa atgtttaaat tgcggagttt
     1561 ttactctgct ttgtttttgt catcattgcg ctgaagaatt atcggaattt tctttaggcg
     1621 taagagaact tgaaaaagat tttaaagttt attcttttta taaatatcat gagattaaac
     1681 atcttttgca cgctaaacat aaattttatg gttattttgt atttcatttc ttggcaaaat
     1741 taagtttttt taaatttaaa aatttttttt ctgtaaatga gcaaattaat gttattcctt
     1801 tagatgatag agttgaaaat ttactttatt ctcattcagc catcttagca aaatatttaa
     1861 agacagaatt tattaagcct atatttggtg ccttacatgc acaaaatcat ctaaagtatt
     1921 ctggaaaaag tttaaaattt agacaagaca ataaaagaaa atttaaactt ttaaaaaaaa
     1981 ttaacaatcc tgtaattttg gtagatgata ttgtatcttc gggttctagt ttacttgaag
     2041 ctaagcaatt tttagaaaaa aataaaattt ctgttctttt tgcggttgtt ttagctgatg
     2101 caaaagttta atatgctata ataatagttt gaaattgcga aggaaaattg atggagaata
     2161 tttttaataa agattctgat attgaactta tagatataga aaattctatt aaaagtagtt
     2221 atttagatta ttctatgagc gttattatcg gtcgtgcact tcctgatgct agagatggct
     2281 taaagcctgt tcacagaaga atactttatg ctatgaatga tcttggcgta ggaagtagaa
     2341 gtgcatataa aaaatctgct cgtatagtag gggatgttat cggtaagtat catccacatg
     2401 gcgatattgc tgtttacgat gccttagtaa gaatgacaca agatttctct atgcgttatc
     2461 caagtatcga tggacaagga aactttggtt ctatcgatgg tgatggcgct gctgcaatgc
     2521 gttatactga agctagaatg acaattttag cagaagagct tttacgcgat atagataaag
     2581 atacggtaga ttttgttcca aactacgatg attctatgag tgagcccgat gttttacctg
     2641 ctagggtgcc aaatttatta ttaaatggct ctagtggtat tgctgtaggt atggcgacaa
     2701 atattcctcc gcatagtctt aacgagcttg tagatggact tttgtatttg cttgatcata
     2761 aggatgctag tttagaagat ttgatgcaat ttatcaaagg tcctgatttc ccaacgggtg
     2821 ggataattta tggcaaaaaa ggcattatcg aagcttatcg cacagggcgt ggtagagtaa
     2881 aaataagagc taaaactcac atagaaaaaa aatccaataa agacattatc gttatagatg
     2941 aacttccata tcagactaat aaagcaagac tcatagaaca aattgcagag cttgtaaaag
     3001 aaaagcaaat cgaaggaatt tcagaagtta gagatgagag tgatagagaa ggaattcgtg
     3061 ttgtaatcga actcaagcgt gaggcgatga gtgagatagt gcttaataat ctttttaaat
     3121 ctactacaat ggaaagtact tttggtgtga ttatgcttgc tattcacaac aaagagccaa
     3181 aaatcttttc tttaattgaa cttttaaatc ttttcttaaa ccatagaaaa acagtgatta
     3241 tcagacgaac aatttttgaa cttcaaaaag caagagcaag agctcacatt ttagaaggtt
     3301 taaaaatagc tttagataat attgatgaag ttatagcttt gattaaaaat agtcctgata
     3361 atactacagc aagagattct ttggtagcta aatttggact taccgagctt caagctaatg
     3421 cgattttaga tatgaaactc ggccgtttaa caggacttga aagagaaaaa attgaaaatg
     3481 aacttgcaga gcttatgaaa gaaatcgcaa gacttgatga gattttaaaa agcgaaactt
     3541 tgctagaaaa tcttatccgc gatgaattaa aagagataaa aagcaaattt gatgtgccgc
     3601 gtattacgca aatagaagat gattatgatg atattgatat tgaagatttg attcctaatg
     3661 aaaatatggt tgtaaccatt actcatcgtg gatacattaa aagagtgcca agtaaacaat
     3721 acgaaaa
//
LOCUS       DARAII010000155         3690 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.157, whole genome shotgun sequence.
ACCESSION   DARAII010000155 DARAII010000000
VERSION     DARAII010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3690
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.157"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            103..1164
                     /locus_tag="SB143_001884"
     CDS             103..1164
                     /locus_tag="SB143_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HEF9750379.1"
                     /translation="MLQKESKIYIAGSSGMVGSSIVKYLKRNNYNNLIFKSHSELNLL
                     NMSDVNSFFKNNQPEYVFLCAAKVGGILDNKNHKADFIFQNLQIQNNIIHQSYLHGVK
                     KLIFIASTSIYPKDLNEVRESDLMKGELDYSNESYAIAKIAGLKMCEAYNIQYNTNFI
                     SLVPTNLYGENDRFDLEKAHVVPALIRKFHLARLLMEKRYEEILRDLKIKNLEEAENY
                     LNQFGINNNSLIIWGSGNAKREFLHVDDLTEACIFTMNNINFKDLYKPSDLEIKNTHI
                     NISPSCNTSIGELAFIVKDVVGYSGNVFFDKTKPEGALNRFTDCSKMHSLGWHHKISL
                     ADGIKKLYNWYLKKNKEEK"
     gene            1161..2324
                     /locus_tag="SB143_001885"
     CDS             1161..2324
                     /locus_tag="SB143_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002822386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEF9750380.1"
                     /translation="MKYSLASSTWDEKELQAIQDVIKSDMFTMGKKVAEFEKDFAKFV
                     GSKYAVMTSSGSTANLIATAALFYTKNPKLKRGDEVIVPAVSWSTTYYPLYQYGLKLK
                     FVDIDLETLNYDLEALSSAISDKTKMIMVVNLLGNPNDFDAINDLIKEKDIILLEDNC
                     ESMGAEYKGNQAGTFGIMGTFSTFFSHHMATMEGGFVVTDDEELYHILLCLRAHGWTR
                     NLPKENLVANKSNDWFSESFRFVLPGYNVRPVEMSGAIGIEQLKKLPMFLKHRRENAK
                     LFCEYFQNHPEFIIQKEIGSSSWFGFSLVIRPNSKLQRKDIIKKLEENGIEYRPIATG
                     DFTQNEVIKYFDYEIHNELKNAKYIHERGFFVGNHQFNISEQINLFKKVLDNL"
     gene            2321..3352
                     /locus_tag="SB143_001886"
     CDS             2321..3352
                     /locus_tag="SB143_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEF9750381.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSIQKLFESKRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRLLKAKDGYDPVVHVCSSSEVYGRAKVGIKLNEDTTFHGASPYSI
                     SKIGTDYLGRFYGEAYGIKTYVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVV
                     KVGNLSSVRTFQDCRDAIRAYYLLSLESEKGNVPCGEAFNIAGEEAFKLPEVIDILLG
                     FSTRKDIKVEQDEERLRPIDADYQMFDNTKIKSYINWKPEIPTRKMFEDLLNHWRKEI
                     SMGRIPLNR"
     gene            3356..>3690
                     /locus_tag="SB143_001887"
     CDS             3356..>3690
                     /locus_tag="SB143_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase"
                     /protein_id="HEF9750382.1"
                     /translation="MMIIRSQTPLRLGLAGGGTDINLYCDQYTGYVLNATLSLYVHCT
                     LTERNDQKIIFDSSDTGIKVEYQSKEFLENDGKLDLYKAIYNRLIKDYVKRPLSFSLH
                     TYSDVPSGSG"
BASE COUNT         1340 a          462 c          699 g         1189 t
ORIGIN      
        1 tttttgcata taaaaattgg tataataatc aaggagtaag agctttaaaa aagattataa
       61 agatgctaaa gagtgtttag cttttggata aggataaaga ttatgctaca aaaagaatct
      121 aagatttata tagctggaag ttccggaatg gtaggatctt caattgttaa atatttaaaa
      181 aggaataact ataataatct aatttttaaa agtcattccg agctaaattt attaaatatg
      241 tcagatgtta attctttttt taagaataat cagccagagt atgttttttt gtgtgctgct
      301 aaggttggtg gaatattaga caataaaaat cataaagctg attttatttt tcaaaatctt
      361 caaattcaaa acaatatcat acatcaatct tatttacacg gagtaaaaaa actaattttt
      421 attgcttcta cttctatata tccaaaggat ttaaatgagg ttcgagaatc agatttaatg
      481 aagggagaat tggattattc aaatgaatct tatgctattg ccaagatagc aggtcttaaa
      541 atgtgtgaag catataatat tcagtataat acaaatttta tttcactagt gcctactaat
      601 ttatatggtg aaaacgatcg atttgatttg gaaaaagctc atgttgtacc agcattaata
      661 cgaaaatttc atttggctag attactaatg gaaaagaggt atgaagagat actgcgcgat
      721 ttaaaaatta aaaatttaga agaagctgaa aattatttaa atcaatttgg gattaataac
      781 aatagtttga taatatgggg gagtggtaac gcaaaaagag agtttttaca tgttgatgat
      841 ttgactgaag catgtatttt tactatgaat aatattaatt ttaaggattt atataaaccg
      901 tcagatttgg aaatcaaaaa cacgcatatt aatattagcc caagctgcaa tacttctatt
      961 ggggaattgg cgtttattgt aaaagatgtt gtgggatata gtgggaatgt tttttttgat
     1021 aagaccaaac ctgaaggtgc tttaaatcgt tttacggatt gttctaaaat gcattcattg
     1081 ggttggcatc ataaaattag ccttgcagat gggataaaaa agttatataa ttggtattta
     1141 aaaaaaaata aggaggaaaa atgaaatatt ctttagcttc atctacttgg gatgagaaag
     1201 aattacaagc aatacaagat gttattaaaa gcgatatgtt tactatgggt aaaaaagtag
     1261 ctgaattcga aaaagatttt gccaaatttg tgggttctaa gtatgctgtt atgacaagct
     1321 caggttctac tgcaaatttg atagcaacag cagcattgtt ttatactaaa aatcctaagt
     1381 taaaaagagg agatgaagta atagtccctg ctgtatcatg gagtactact tattatccac
     1441 tttatcagta tggtttgaag ttaaaatttg tagatataga tctagaaaca ctaaattatg
     1501 atttggaagc attaagtagt gctattagcg ataaaacaaa aatgattatg gttgtaaatt
     1561 tattaggcaa tcctaatgat tttgatgcga ttaatgatct tataaaagaa aaagatatta
     1621 tcttactaga agataactgc gaatcaatgg gcgcagagta taaaggaaat caagctggaa
     1681 cttttggtat catgggaact ttctcgacat ttttttctca tcacatggct acgatggaag
     1741 gcggttttgt tgttacagat gatgaggaat tgtatcatat attgctttgt ttaagagcgc
     1801 atggttggac gagaaattta ccaaaagaaa atttagtggc caataaaagc aatgattggt
     1861 ttagcgaatc atttcgtttt gtattaccag gatacaatgt gcgtcctgta gaaatgagtg
     1921 gagctatagg catagagcaa cttaaaaaat tacctatgtt tttaaaacac cgcagggaaa
     1981 atgctaaatt attttgcgag tattttcaaa atcatcccga atttattata caaaaagaaa
     2041 tcggaagtag ctcttggttt ggattttcat tagtgattag accaaattct aaattgcaaa
     2101 gaaaagatat tattaaaaaa ttagaagaaa atggcataga gtatcgtcct atagctacgg
     2161 gtgattttac tcaaaatgaa gtgattaaat actttgatta cgaaattcat aatgagctta
     2221 aaaatgcaaa atatattcac gaaagagggt tttttgtagg gaatcatcag tttaacatta
     2281 gtgaacaaat taatttattt aaaaaagtat tggataatct atgaaaaaaa cagcattaat
     2341 tactggtttt acagggcaag ttggctcgca aatggcagat tttttactag aaaatacaga
     2401 ctatgatgtt ataggcatga tgcgttggca agagccaatg gataatatct atcatttaag
     2461 cgacaggata aacaaaaaag ataggatcag cattttttac gctgatttaa acgattactc
     2521 aagtattcaa aagctttttg aaagcaaaag acctgatgtg atctttcatc tagctgcaca
     2581 gtcttaccca aaaacttctt ttgatatacc catagaaact ctacagacaa atatcatagg
     2641 cacagcaaat attttagaaa atatcagatt attaaaagct aaagatggct atgatcctgt
     2701 ggtgcatgtt tgctcttcta gtgaagttta tggcagggca aaagtgggta tcaagctaaa
     2761 tgaagatacg acttttcatg gtgcaagccc ttatagtata agtaaaattg gcacggacta
     2821 tttaggaaga ttttacggtg aggcctatgg tataaaaaca tatgttacca gaatgggaac
     2881 tcatagcggc ccaagacgct ccgatgtgtt ttttgaaagc actgttgcaa agcagatcgc
     2941 cttgatcgaa gcagggtatc aagagcctgt tgtaaaagta ggaaacttat ctagtgtaag
     3001 aacctttcag gattgtcgtg atgctataag agcttattat ctactttcat tagaaagtga
     3061 aaaaggcaat gttccttgtg gagaagcttt taacatagcc ggtgaagaag cctttaaact
     3121 tcctgaagtt attgatatac ttttaggttt ttctacaaga aaagatatca aagtggagca
     3181 agatgaagaa agattacgtc ctattgatgc agactatcaa atgtttgaca atactaaaat
     3241 caaaagttat atcaattgga agccagaaat tccaactaga aaaatgtttg aagatttgct
     3301 aaatcattgg agaaaagaaa tctccatggg cagaatccca cttaataggt agtaaattat
     3361 gataatccgt tctcaaacac ctttgcgttt aggtttggcc ggtgggggta ctgatataaa
     3421 tttatattgt gatcaataca caggttatgt tttaaacgcg acactatctc tttatgtgca
     3481 ttgtactttg acagaaagaa atgatcaaaa aatcattttt gattcttctg atactggcat
     3541 aaaagtagag tatcaaagta aagagttttt agaaaatgat ggtaaattag atctttacaa
     3601 agcgatttat aatcgcttga taaaagacta tgttaaaaga cctttaagtt tttctttgca
     3661 tacttattca gatgtaccaa gtggtagtgg
//
LOCUS       DARAII010000156         3646 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.158, whole genome shotgun sequence.
ACCESSION   DARAII010000156 DARAII010000000
VERSION     DARAII010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3646)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3646)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3646
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.158"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..2258)
                     /locus_tag="SB143_001888"
     CDS             complement(<1..2258)
                     /locus_tag="SB143_001888"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEF9750383.1"
                     /translation="MSFMQDYNKLVEERAALGIPPLPLNAEQTKELCELLKTQNDEKL
                     VSLLQNRVNPGVDDAALIKCEFLDGILKNKFQAPAIDKKLALKMLETMLGGYNVKVLI
                     DALKDESIASDAAEVLKNIIFVHDNFHTVAELSKSNNHAKAVLESWANADWFNKKEKL
                     PQVIQCVVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIDGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVSNLEMGDEFEIHPYEGKIVKNGSVVAEFKLSPNTILDEVRAGGRIPLI
                     IGRGLCAKAREFLGMENENIFTKPEQPEASSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     RTLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYEDK
                     ATLARRADKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTK
                     EGYYSIFGSAGA"
     gene            2313..2789
                     /locus_tag="SB143_001889"
     CDS             2313..2789
                     /locus_tag="SB143_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEF9750384.1"
                     /translation="MFKVYYKIPFCYLSLHSNGDFLTKIDFCDRLDIENTCPLLEFAK
                     EELRLYFAKKLQKFQTPLWIQGGDFEQKVYKELINIPYAKLVTYKEIAININHPKAFR
                     AVGNANSKNLIPIFIPCHRVIASNGLGGYNGGLAIKRFLLECEGVDLSQFKNKLGD"
     gene            complement(2762..>3646)
                     /locus_tag="SB143_001890"
     CDS             complement(2762..>3646)
                     /locus_tag="SB143_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750385.1"
                     /translation="SVTGFALSLHELKNGFAFFSNNKKEIIQAVQKGAFAIISEHELC
                     IDDKEIYYLQVDNLESALIKLLRFLCEEKECEFIALQAYELGICKAFSLNILKGNIFV
                     DFNSLIKAKKGEIFCFSDENYLLQLCASLTILKEANFTLLSRSSFFFTTLVCDNLYFK
                     NLNLPFIYAKIFAKIMFYLKEKNTKMSFDFNKIDDFKIYFMDENFNISEFGSSARAFI
                     IVSNQNTFDFWQENFKNIKGFKTALHNSLFCDFSYDKLLDLKNLKNFKYCLLLEDYEA
                     FEREFKNEENQSPSLFLN"
BASE COUNT         1143 a          667 c          555 g         1281 t
ORIGIN      
        1 cttgcgccag cagagccaaa gatactataa tacccttctt tggtgagttg tgctttatcc
       61 atttttgttg gaggcactac ccaaagtctg gttttaagta tgcctttatc ttttaaaatt
      121 tctcccaaag ctctataatg tcctatgttt gtcatacaag aacctacaaa aacttcatct
      181 atattttttg gacgcttgtc atcggctaaa atttcgctta aggttgccac atcatcaggg
      241 tcatttggac aagctagaat tggctccttg atatcgttaa gattaatatc gataatgtac
      301 gcatattttg catctttgtc tgctcttaaa agagtagggt ttttaagcca ttctctcatt
      361 ttatccgctc ttctagcaag agtggcttta tcttcatatc ctgcttctat cattgcttct
      421 ataagtgaaa tatttgattt gatatattcg cttacacttt ctatgcttaa atctacacta
      481 caagcagctg cagatctttc agcacttgca tcactgagtt caaaagcttg ttctactttt
      541 aaattcggca agccttctat ttctaaaatt tttcctgcaa aaatgttctt tttatttttc
      601 ttttcaacag taagttgtcc ttgtttgatt gcataataag gtatagcatt tacaagatct
      661 cttaaagtaa ctccagcttg caattctccg ctaaaacgca ccaaaacact ttcaggtaca
      721 ttcaaaggca tagagccagt tactgcagca aaagctacaa gtccacttcc tgcaggaaat
      781 gaaattccta taggaaaacg agtgtgagaa tctccacctg ttcctactgt atcaggtaaa
      841 acaaaacgat taagccaaga gtggattacc ccatcgcctg gttttaagct tactccacca
      901 cgacttgtca tgaaattagg taaagttttg tgcaaatttg agtcactaac ctttggataa
      961 gcagcagtat gacaaaaact ttgcattaca aaatccgcat taaatcctaa gcttgcaagc
     1021 tctttaatct catctcttgt cataggacct gtagtatctt gagaacctac agtaagtgtg
     1081 cgaggctcta tatacatacc tggacgcaca ccttcaactc cacaggcacg ccctagcatt
     1141 ttttgagcta aagtatatcc accgcttgaa gcttcaggtt gttctggctt agtaaagata
     1201 ttttcatttt ccattcctaa gaattctcta gctttagcac aaagtccacg acctatgata
     1261 agtggaattc ttcctcctgc tctaacttca tctaagatgg tatttgggct gagtttaaac
     1321 tctgcaacaa cagaaccatt ttttacaatc tttccttcat aagggtgaat ttcaaactca
     1381 tctcccattt ctagattgga cacatcgcaa ataataggta aagcaccgct atcttgagct
     1441 gtgttaaaga aaatcggagc tatggttgag cccattacta taccaccact gtgtttgttt
     1501 ggcacaccat caatttcttt tcctaaatgc cattgtatgg agttaatcgc agattttcta
     1561 cttgaacctg tacctacgac atcgcccaca tatacgactt cacgaccact ttttttgagt
     1621 tctttgattt tttctagaga acctgtttgt cttactttta gcatagcatt agcatgtaaa
     1681 gggatatcgc ttcttgtaaa agcatcacca gcagggctta aatcatctgt attggtttct
     1741 cctgctactt taaaaactac acattgaatc acttgaggta atttttcttt tttattaaac
     1801 caatctgcat ttgcccaact ttccaaaaca gctttagcat gattattgct tttgctaagt
     1861 tctgctacgg tatggaaatt atcatgtaca aagatgatat ttttaagtac ttctgctgca
     1921 tcgctagcta tactttcatc ttttaatgca tcgattaaaa cttttacatt ataaccacct
     1981 agcattgttt caagcatttt taaagcgagt tttttatcta tggctggagc ttgaaattta
     2041 ttttttaaaa ttccatctag aaattcacat tttatcaagg ctgcatcgtc aacgcctgga
     2101 ttgacacgat tttgcaataa agataccaat ttttcatcat tttgggtttt taaaagttca
     2161 caaagttctt tagtttgttc tgcatttaaa ggaaggggtg ggatacccaa agctgctctt
     2221 tcttcaacaa gcttattgta atcttgcata aaagacattt tttactcctt aaatattttt
     2281 tagtataatt ttaactattt aaaggataaa atatgtttaa agtttattat aaaataccat
     2341 tttgttactt atctctacat agcaatggag atttcttaac aaaaatcgat ttttgcgatc
     2401 gtttggatat tgaaaatact tgtcccctgc ttgaatttgc caaagaagaa ctcagacttt
     2461 attttgctaa aaagcttcaa aaatttcaaa cacctttatg gatacaaggg ggtgattttg
     2521 aacaaaaagt atataaagaa ttgataaata tcccttatgc aaagcttgtt acttacaaag
     2581 aaatagctat aaatatcaac caccccaaag cttttcgcgc agtgggtaat gcaaactcta
     2641 aaaatttaat tcctattttt attccttgtc atagggttat agctagtaat ggcttgggtg
     2701 gatataatgg cggtcttgct ataaaaagat ttttgttaga atgtgagggg gttgatttaa
     2761 gtcagtttaa aaataagctt ggagattgat tttcttcatt tttaaattca cgctcaaaag
     2821 cttcataatc ttctaaaagc aggcagtatt taaaattttt taagttttta agatctaaaa
     2881 gtttgtcgta tgaaaaatcg cagaataatg aattatgcaa agcggtttta aaacccttta
     2941 tatttttaaa attttcttgc caaaaatcaa aggtattttg attgcttacg atgataaatg
     3001 ctcttgcact tgagccaaat tcagaaatat taaaattttc atccatgaaa taaattttaa
     3061 aatcatctat cttattaaaa tcaaaactca tttttgtatt tttttcttta agataaaaca
     3121 taatttttgc aaaaattttg gcataaataa agggaagatt taagttttta aaatacaaat
     3181 tatcacaaac tagagtcgta aaaaaaaagc tagagcgaga aagtagggta aaatttgctt
     3241 cttttaggat tgttaaagat gcgcaaagtt gaagtaagta attctcatcg ctaaaacaaa
     3301 aaatttcacc ctttttagcc ttgataagtg agttaaaatc tacaaatata tttcctttta
     3361 aaatgtttaa agaaaatgct ttgcaaattc ctagctcata agcttgaagt gctataaatt
     3421 cacactcttt ttcttcgcat aaaaaacgca agagtttaat taaggctgat tctagattat
     3481 ccacctgaag ataataaatt tctttatcat caatacaaag ctcatgctct gaaataatag
     3541 caaatgcgcc tttttgcact gcttggatta tctctttttt attattgcta aaaaaagcga
     3601 agccattttt aagctcatga agacttaatg caaagcctgt aacgct
//
LOCUS       DARAII010000157         3629 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.159, whole genome shotgun sequence.
ACCESSION   DARAII010000157 DARAII010000000
VERSION     DARAII010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3629)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3629)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3629
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.159"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            2..1276
                     /locus_tag="SB143_001891"
     CDS             2..1276
                     /locus_tag="SB143_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002946489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEF9750386.1"
                     /translation="MFWDLLSKYLTVIINTAMVSHYSNFLVGAMGAGNQILDLFITIF
                     SFLSVGCSVLIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVLILWHGEYLLYLLKI
                     PQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFIGFLMDIVVICGNYY
                     VLHYTKSELFGVGLSNIFARIVAIVALLVILFYKLKIHLKIKEMIKLEKEVLKKVLNI
                     GGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIMLIGQATSIANEIII
                     GKLVGARYENIAYKHTWRALYFSVIASALVAFLNYLCQDFTMQILGLKEELKNLMIPL
                     FALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLPVGYVLCFHFNLGIL
                     GVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1252..1899
                     /locus_tag="SB143_001892"
     CDS             1252..1899
                     /locus_tag="SB143_001892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEF9750387.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKRIKTLRLRLNERGEFVLSIPY
                     FCTFKNVYEFLDKSSSWMNEAKKRFEKKALKDDELIFLAKKYKIIFDENVKKTYFNKD
                     KILCQNKAKLDLFLRQNAKKIFTFYLKKWSQKTGLFYTHLSIKNMKTRWGSCNHNKAY
                     VNLNLKLIQKSLKAIEYVILHEICHLKFPNHSKEFYDFIEYFMSDFRQREKEFLS"
     gene            1941..3461
                     /locus_tag="SB143_001893"
     CDS             1941..3461
                     /locus_tag="SB143_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750388.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGHGFSPCIPEDKEFSKFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNVMFRKNHNL
                     DFNDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDYEDILLINKELNLLKLCL
                     PKHSKELYEEIQKDEIGARLLENFAKEFPLLNESFELKNNFYSLLCLVGRVLNLDENL
                     HKTGEKLLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSTMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDYLREKKQSEMALISGSLFEHKALLRNTLKHLKNCQLSDVPLRI"
     gene            3442..>3629
                     /locus_tag="SB143_001894"
     CDS             3442..>3629
                     /locus_tag="SB143_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEF9750389.1"
                     /translation="MCHLGYKLQISGLVQGVGFRPLVFELASELGLHGEVKNDGFGVE
                     IILACTKEECENFIYKLK"
BASE COUNT         1226 a          399 c          661 g         1343 t
ORIGIN      
        1 tatattttgg gatttacttt ctaagtattt aactgtgatt atcaataccg ctatggtgtc
       61 gcattattct aattttcttg ttggtgctat gggcgctgga aatcaaattt tagatctttt
      121 tatcactatt ttttcatttt taagtgtggg ttgtagtgtg ctgatcgcac aagcaattgg
      181 tgcaaaagat catgttttag caagaaaagt gattcatcaa agtttgttct taaatgcact
      241 tttaggcttt gtatgcggtg tgcttatttt atggcatggg gagtatttgc tttatctttt
      301 aaaaattcca caagaattgc tcaaagatag cgaaatttac ttacatatgc ttgcaatttg
      361 tttgtttttt gatgccatag gtattgtttt agcggctatt gtaagggttt ataatatggc
      421 ttattgggtc atgtttatag gttttttgat ggatatagtg gtgatttgtg gaaattatta
      481 tgttttgcat tatacaaagt cagaactttt tggagtaggg cttagcaata tttttgcgcg
      541 tattgttgct atagtggctt tacttgtgat acttttttat aaacttaaaa ttcatcttaa
      601 aatcaaagaa atgataaaac ttgaaaaaga ggtattaaaa aaggttttaa atataggtgg
      661 attttcagca ggggaaaatc ttttgtggat agtccaatac actatagctt ttgcttttgt
      721 agcaagctta ggtgaagcaa gtttgagtgt gcaaacgatt tattttcaaa tttcaatgct
      781 tatcatgctt ataggacaag ctacgagcat agctaatgaa atcataatag gtaaattagt
      841 cggtgctaga tatgaaaata tcgcttataa acatacttgg cgtgctttat attttagtgt
      901 aatagcgagt gctttagtgg cgtttttaaa ctatctttgt caagatttta ctatgcaaat
      961 tttaggactt aaagaagagc taaaaaattt aatgatacct ttatttgccc tttcaatctt
     1021 tcttgaaatt tcacgcactt ttaatatagt catggtcaat tctttgcgtg caagtggcga
     1081 tgctaagttt ccatttttta gcggacttgt ttttatgatg ggagtatctt tacctgtggg
     1141 ttatgtgctt tgttttcatt ttaatcttgg aattttaggg gtttggatag gattttgtgc
     1201 ggatgaattt ttacgtggaa tggtaaattc atacagatgg aaaagcaaaa aatggcaagg
     1261 caaagctcta gtttaaaatc atttatttat aaagatgagt gctattttta ttctaaaaaa
     1321 cgcataaaaa ctttaagatt aaggctcaat gaaaggggtg aatttgttct tagtattcct
     1381 tatttttgca cctttaaaaa cgtttatgag tttttagata aatcaagttc ttggatgaat
     1441 gaggcaaaaa aaagatttga aaaaaaagcc ttaaaagatg atgagttaat ctttttagct
     1501 aaaaaatata aaattatttt tgatgaaaat gtcaaaaaaa cttattttaa taaagataaa
     1561 attctttgtc aaaataaagc aaaattagat ttatttttaa gacaaaatgc taaaaagatt
     1621 tttacttttt atcttaaaaa atggagtcaa aaaacaggtt tattttacac gcatttaagc
     1681 attaaaaata tgaaaacgcg ttggggttca tgtaatcaca ataaagctta tgttaattta
     1741 aatttaaaac tcattcaaaa gagtttaaag gctattgaat atgtgatttt gcatgaaata
     1801 tgccacttaa aattccccaa tcatagcaaa gaattttacg attttattga gtattttatg
     1861 agtgatttta ggcaaagaga gaaagaattt ttaagttaaa aatgttatat ttatagttta
     1921 tttttcaaaa aaggcataat atgactttgg attttgattt tatttataat gcggataatg
     1981 atatttttga atatttattg cgtttttatg cgaaaaatta caattatatc cttagtaaag
     2041 aagaaaatac ttatcatttt tctatcgatg cagatgaaga aaatttaaag actttttgcg
     2101 attctttgaa tttcatgagt catagcgttt ttttgaaaaa atttgatgta aaagcggggc
     2161 atggttttag cccttgtata ccagaagata aagaattttc gaaattttct tatattacgc
     2221 atttaaattc taatgcttat caagaaaaaa aacttttaaa caaaaatgaa tggggtgtgt
     2281 tttgtgagtg tgaattttca agcaatttat cagaatttga aaaaatcaat gaagaaaatt
     2341 tcaatacttt tttaaatctt gcctttgatt tgttaagtca agaaaaaaag atttatttga
     2401 aagataaaaa tggcatttat gaattttctt tgtttaagaa cgaatttata ggagattttt
     2461 tacttccttg tgatattaag gctataaatt cagtttttgt ttgttcaaat gaaaatttaa
     2521 aacttcttgc aagtttggaa aaacctttga tgaagctaag acttaatgtc atgtttagaa
     2581 aaaatcacaa tcttgatttt aatgatttta aaatcagact tgctagggat ttgttttgtt
     2641 ttgctttagg tttaaaactt tttgaaaatg aatataaatt tttaagcgta aaaaagatag
     2701 aagaatatca aaaagatttt tatatcagtg ctttagatga gcaagtggtg gttttggaag
     2761 gctttgaatt tatcaatgct aaggcaagag agcttatttt ttctaaagaa gataaaaata
     2821 tggcaagaat ttcttatctt gtaagccgtt ataaagaaaa ggcttttatt ttagagctta
     2881 gtaaggatta tgaagatatt ttgcttatca acaaagagct taatttgctt aaactttgct
     2941 taccaaaaca cagcaaagag ctttatgaag agatacaaaa agatgaaatc ggcgcaagac
     3001 ttttagaaaa ttttgccaaa gaatttccgc ttttaaatga gagttttgaa cttaaaaaca
     3061 atttttattc tttactttgc ttggtgggta gggtgttaaa tttggatgaa aatttacaca
     3121 agacaggaga aaaactttta aaaatcgcag acgaatctaa aatgcctcgt ggggtgaaga
     3181 ttgattatcg tttgaaagaa gataaaagtt ttgattatac taggacctta agatctacta
     3241 tgagctttat gctagcaggg gtagatagtg caaatatcgc ttatggagct gtggaaagct
     3301 tggcttattt tttacgcgat acttatgatt atttaagaga aaaaaaacag agtgaaatgg
     3361 cgctaattag tggatctttg tttgagcata aagccttgct tagaaatact ttaaaacatc
     3421 ttaaaaattg tcagttaagc gatgtgccac ttaggatata aacttcaaat ttcaggactt
     3481 gttcaaggcg taggttttcg tcctcttgtc tttgagcttg cctctgaatt aggacttcat
     3541 ggagaagtaa aaaatgatgg ttttggggta gaaattatcc ttgcttgtac caaagaagaa
     3601 tgcgagaatt ttatctataa gctcaaaga
//
LOCUS       DARAII010000158         3626 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.160, whole genome shotgun sequence.
ACCESSION   DARAII010000158 DARAII010000000
VERSION     DARAII010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3626)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3626)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3626
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.160"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(58..1149)
                     /gene="hypD"
                     /locus_tag="SB143_001895"
     CDS             complement(58..1149)
                     /gene="hypD"
                     /locus_tag="SB143_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEF9750390.1"
                     /translation="MNFIDEFRDKDNILALKKLIEQEIKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRARGADIRALYSPLEVLDIAKQNLNKTIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDIIESVLNIVRQINKGSFEVFNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNV"
     gene            complement(1133..1414)
                     /locus_tag="SB143_001896"
     CDS             complement(1133..1414)
                     /locus_tag="SB143_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEF9750391.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            complement(1414..2157)
                     /gene="hypB"
                     /locus_tag="SB143_001897"
     CDS             complement(1414..2157)
                     /gene="hypB"
                     /locus_tag="SB143_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEF9750392.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            complement(2235..>3626)
                     /locus_tag="SB143_001898"
     CDS             complement(2235..>3626)
                     /locus_tag="SB143_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEF9750393.1"
                     /translation="FVDEEEELLGSILAPIVILKAKKAFSLIAPDVDKLGIMLAYTPL
                     HLLLFRYFDGVLVATSANLSGESIIKDEDNLLKKLGNVFDFYLDYAREIHNPSDDSIA
                     QVVNGKTMFLRTSRGLNPTYLEIKSDKKGVFLALGSELKNEFVIFYENKLLISPYIGD
                     LKSVDVHERFFSLLDFFKQSYDLSFDQILCDKHPNFSYTKEFYNTYKIQHHYAHFCAL
                     YFEYEKEFKKDEKALGFIFDGTGYGDDGKIWGGEIFIGNLKQYERIAHFENFTLINSD
                     IKNIQNLALSLIWHYDLEDEAKIFLSKIPKIKLENLKKIHTHSTLQTSSLGRIIDAFG
                     SIVFNMEKISYEAQIGLMCEAFYDENLDFSYELFSKDGEINFKELIEGALKDEKTKAI
                     TGMFNALANFIIDFSKDYDLKVLLSGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSI
                     ALGQMVHFLNLEK"
BASE COUNT         1173 a          712 c          480 g         1261 t
ORIGIN      
        1 tagttaaaag ctcgttcatc tcttctccgc cacctccgtg ggctaaggaa atatttttca
       61 tacattcacc tttgagtatt tataatacgc cgcacaagca ccctctccag aaaccataca
      121 acttcctata ggacttcttg gcgtacaagc cttaccaaaa actttacaat cataaggctt
      181 ggctaaacct cttaaaattt gcccacaaat acaggctttg ctttcatttt tgctttgcac
      241 cgtgcaatca aattttttac tcgcatcata ggcgctaaat tcttctttta gttccaagcc
      301 tccatcttta ataagtccta agccacgaaa ttcaaaatca cacaccctaa agtatttttt
      361 tactaaattt tgtgctttaa cattaccttc tttacttacg gctcttttat attgattaaa
      421 gacttcaaaa ctacctttgt tgatttgtct tactatattt aaaacgcttt cgatgatatc
      481 cacaggctca aaaccactca ctgctatagg ggttttaaac tttgctgcta aaggctcata
      541 aataccataa cctgtgatca cgctcacatg agaaggccct aaaaaggcat tgatctttac
      601 attttcatca ttcatgatcg cttctacagg tgctggaacc gtgatatgat tgatatgaaa
      661 aaagacatta tttatttttt cttctataac cttttgaaga agtaaagcac tcataggcgt
      721 agtagtttca aaacctatgg caaaaaagat gatggttttg tttaaatttt gcttagcgat
      781 atccaaaacc tcaagcggag agtaaagtgc tcttatatcc gctccccttg ctcttaaatc
      841 aagcaaagaa atttcgcttc ctggaaccct taaaagatct cctaaggtgc aaaaaatcgt
      901 atctttcata gaagcaagtt tgatcgcagt atcaatgcga actcttggca tcacacaaac
      961 aggacaacct ggcccatgga tgaaattaat ctctttaggc aaaatagaag gcaaagcgta
     1021 tttcataata ctatgcgtat gcccgccaca aatttccatg atattaatag gatttttaat
     1081 ttcttgttct ataagctttt ttaaggctaa aatattgtct ttatctctaa attcatcgat
     1141 gaaattcatt taaacctaaa tccccctcat cactttttat ctctccacta ttcatttttt
     1201 ctactatttc ttgataggtt ttaatgcttt ctagtgcagc ttctttgtcg attttttcca
     1261 tagcaacgcc tacatggatt aatacataat cgccttgttt taaaggttca tcaatcaaat
     1321 ccaaattaac ttttcttttc acacctaaag tttgtactaa agcattgttt aactcatcga
     1381 tttctaaaat ttcagaaggt atagacaaac acattaaaaa agctcctttt taagtttaag
     1441 caccttatac caaagctcca tattggtgcc attttttgca tcaagagtga tgatatctgc
     1501 tctaggattt aattctttaa tcaacctagt cgcctcttta atatcgaaat caaaatgatg
     1561 ggccaaatct gcctttgtga ttaaaactat atcagccttt ttaaacatca cagggtattt
     1621 ttgcggttta tcgcttcctt cggtaacaga aagcaaaacc acatttaaat gctctcctaa
     1681 atcataactt gcaggacaga ctaaatttcc aacattttct ataaaaagca aatccacatc
     1741 atcaatagct aaatgatgca aagcctcatg caccataaaa gcgtccaaat gacagctttg
     1801 ccctgtagtg atttgatatg ccaaagctcc ggcatttttt acccttagag cgtcattatt
     1861 ggtttctaaa tccccttcaa tcacagcgat tttaagttca tttttcaaag ccttaatcgt
     1921 gctttctaaa agcgtagttt ttccactacc tggagaactc attaaattga tacaaagcgt
     1981 gttagcttca ttaaaatgcg ctctattgtg cttagcttct tcatcatttt tgcttaaaat
     2041 tttagaaatc acttctatgg ttttgctttc ttttaaactt ggattttcat gatggtggtc
     2101 gtgatgatga ccatgcgtat ggcttgaatt tatagagcag ccgcaatctt tacacatttt
     2161 ctttccttat atatttttta tttcatttta accttaaaag cattaaaaaa ttatgagttt
     2221 ttagaatatt tgctttattt ttctaaattt aaaaaatgca ccatttgtcc taaggctatg
     2281 gagctatcat tacaagggta ctttaaaggt ataaaaaaat caaaattttt agcttttaaa
     2341 atttcaagca aggttttgtt ttgaaaaacc cctccgctta aaagcacttt taaatcataa
     2401 tctttgctaa aatctatgat aaaatttgct aaagcattaa acatgcctgt aattgcctta
     2461 gttttttcat cctttaaagc accctcaatg agttctttaa agttgatttc tccatcctta
     2521 gaaaaaagct cgtaagaaaa gtctaaattt tcatcataaa atgcttcaca catcagcccg
     2581 atttgtgctt cgtaagaaat tttttccata ttaaaaacta tactcccaaa agcatcgata
     2641 atgcgtccta aagaacttgt ttgaagtgta gagtgggtgt gaattttttt aagattttca
     2701 agttttattt ttggaatttt agataaaaat atcttagcct catcttctaa atcataatgc
     2761 caaatcaagc tcaaagctaa attttgtata ttttttatat cgctattgat aagggtaaaa
     2821 ttttcaaaat gcgcgattct ttcgtattgt tttaaattcc ctataaaaat ctcgccaccc
     2881 caaatttttc catcatcacc ataacccgtg ccatcaaaga taaaacccaa agctttttca
     2941 tcttttttaa attctttttc gtattcaaaa taaagtgcac aaaaatgtgc gtaatggtgc
     3001 tgaattttat aagtattgta aaattctttt gtatagctaa aattaggatg cttatcgcaa
     3061 agtatttgat caaaactcaa atcataactt tgtttaaaaa aatcaagcaa agaaaaaaat
     3121 ctctcgtgca catcaacact ttttaaatct cctatataag gagaaatcaa aagtttattt
     3181 tcataaaaaa tcacaaattc attttttaac tccgaaccca aagctaaaaa aactcctttt
     3241 ttatcgcttt taatttccaa ataagtcgga tttaaacctc ttgaagtgcg taaaaacata
     3301 gtttttccat ttacaacttg agcaatgcta tcatcgcttg gattgtgaat ttctcttgca
     3361 tagtctagat aaaaatcaaa aacattgcca agctttttaa gcaaattatc ctcatcttta
     3421 ataatacttt caccacttaa atttgcactt gttgctacta aaaccccatc aaaatatcta
     3481 aaaagtaaaa gatgcagtgg agtataggct aacataatgc cgagtttatc cacatcagga
     3541 gcgattaaag aaaaggcttt tttagctttt aaaatcacga taggagctaa aatagaacca
     3601 agcagttctt cctcttcatc cacaaa
//
LOCUS       DARAII010000159         3622 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.161, whole genome shotgun sequence.
ACCESSION   DARAII010000159 DARAII010000000
VERSION     DARAII010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3622
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.161"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            223..585
                     /gene="ssb"
                     /locus_tag="SB143_001899"
     CDS             223..585
                     /gene="ssb"
                     /locus_tag="SB143_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEF9750394.1"
                     /translation="MINNITIGGRLTADAELRHCNQGSIICTFTLANNRKYKEIENST
                     YIEVSLFGSFANAMHPYLKKGISVDVVGELTQDTWEHEGKIYSKHRIKAKEIDFRTPK
                     KEKQTIPNIEEGENYEGF"
     gene            572..712
                     /locus_tag="SB143_001900"
     CDS             572..712
                     /locus_tag="SB143_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750395.1"
                     /translation="MKDFKELETIPNFSYEVDPLTAEELGAFKENALSEDDAKEGTED
                     QG"
     gene            717..2930
                     /locus_tag="SB143_001901"
     CDS             717..2930
                     /locus_tag="SB143_001901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1738 domain-containing protein"
                     /protein_id="HEF9750396.1"
                     /translation="MKNKDFIQETADKIIESLKNGTAPWIKPWKGIDLANNMPYNPIT
                     NKPYNGINSINLMLQNYNDPRWLTYKQAQSINAQVRKGEKSTLIQYWQFSEMVDKLDE
                     EGNVITNENGEVEQIEVKLENPKVFFTYVFNAEQIENMPKLEQKQEIDNFQIIKEAQK
                     ILDDSKAIIHHQGNRAFYNATNDTITLPPKENFLNESAYYATALHELGHWSGHSSRLD
                     RDLNNPFGSKEYAKEELRAEIASFLFNGKIGLDYDPGQHLSYIDSWVQILEDKPNEIF
                     KATSDATKIVNFIESLSLEQKQKIELENSNTQKQELTQDKELNLVTKKTYLYVPFEEK
                     ESAKKAGAKWDKEAKMWYAPKGTDLKNFNQWLNQSSLTPNYSNTHDEFKAFLEKYELN
                     IEGQPIMDGKLHRVSVIGDKGREKSGAYVGFLNGHPAGFVQNYKTGIKENWKSANSFE
                     NTKNQEINLQNALEHNKALKEQRDKELNQAYENTAVKLENEYNNARWANSEHPYLKEK
                     GFDKNFYLKQDKNGNLLIPLRDIEGKYWATQRIFANGDKMIGATRTAEEKEQGIEYPA
                     KKQGNFFLLGAKNLNNVNEVYICEGFATSASVYEATKSPTIMGVDAGNLEIIVTNIKE
                     KYPKMNIIIAGDNDVKKELNGNKNVGKETALGIQKKYPEVKVVLPNFTNQEAQKGLSD
                     FNDLMKSRGLEEIKKQLKEQIAKQLMVEKATTKALDKNKGINKEITAKKDIGISL"
     gene            2927..>3622
                     /locus_tag="SB143_001902"
     CDS             2927..>3622
                     /locus_tag="SB143_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEF9750397.1"
                     /translation="MKKQTNQTLVYILAITGILIAFIIISQIATQYLAKSFNYSPSLG
                     ETLLYGFYNPFKWISWSYTYYSFYPDFFKKFFMVMFAGIAFCFIVFILVKLAFLRKAK
                     AIENLHGSAHWATLEEVKESGVFDKDKGVYIGGFEHKKTLHYLRHDGPEHVMLFAPTR
                     SGKGVSLLLPTLLSWEESALIFDIKGELWALTAGWRQKYAKNKVLKLDPTCLDDSAVK
                     FNILEEIRLETMHE"
BASE COUNT         1494 a          488 c          647 g          993 t
ORIGIN      
        1 tatgtagcta aatacgattc aacagcaaaa acgatagatg acttggaaga aaaagcaaga
       61 aaatcggaca caagaattaa gattacttac aatcttttca atttgcaaac acaaaaaaag
      121 gagtaaaaat ggaaaatgaa aatttggaag aaaataaacc tatacaattt gatgataatg
      181 agccaagctt atttgataac ttagaagatg aggagcaaga taatgattaa taatattaca
      241 ataggcggaa gattaacagc tgatgctgaa ttaagacatt gtaatcaagg tagtatcata
      301 tgcaccttta ccttagcaaa caacagaaaa tacaaagaga tagaaaattc aacttatatc
      361 gaagtatctc tttttggttc ttttgctaat gccatgcacc catatttaaa aaagggcatt
      421 tcagttgatg tggttggaga actaactcaa gacacttggg agcatgaagg aaaaatttac
      481 tcaaaacacc gaataaaagc aaaagagata gattttagaa caccaaaaaa agaaaaacaa
      541 acaataccta atattgaaga aggagaaaat tatgaaggat tttaaagaac tagaaacaat
      601 accaaatttc agctatgagg ttgatccatt aactgctgaa gaattaggtg catttaaaga
      661 aaatgcctta agcgaagatg atgccaaaga aggcacagaa gatcaaggat aatttcatga
      721 aaaataagga tttcatacaa gaaacagccg ataaaatcat agaaagctta aaaaatggaa
      781 ctgcaccatg gattaaacct tggaaaggta ttgatctagc taacaatatg ccttataacc
      841 cgattacaaa caagccttat aacggcataa atagcattaa tttaatgcta caaaattata
      901 atgatcctag gtggcttact tataaacaag cacaaagtat taatgcgcaa gttagaaaag
      961 gtgaaaaatc gactttgatt caatattggc aatttagcga aatggttgat aaattagatg
     1021 aggaaggtaa tgttattaca aatgaaaacg gagaagtaga gcaaatcgaa gtaaaattag
     1081 agaatcctaa agtatttttc acttatgttt ttaatgccga gcaaatcgaa aatatgccaa
     1141 aattggagca aaagcaagag attgataatt ttcaaataat taaagaggca caaaaaattt
     1201 tagacgattc aaaagcgatt attcatcatc aaggaaatag agctttttat aatgctacaa
     1261 atgatactat tacactacca ccaaaagaaa attttttaaa tgaaagtgct tattacgcaa
     1321 ctgctttaca tgaattagga cattggagcg gtcattcaag tagattagat agagatttaa
     1381 acaatccttt tggttctaaa gaatatgcca aagaagaatt aagagccgaa attgcaagtt
     1441 ttctatttaa tggtaaaatt ggtttagatt atgatccagg acaacattta tcatatattg
     1501 atagttgggt gcaaatttta gaagataaac caaatgaaat ttttaaagct acctccgacg
     1561 ctacaaagat tgttaatttt attgaaagtc tttctttgga gcaaaaacag aaaatagagc
     1621 ttgaaaactc aaatacacag aaacaagagc ttacacaaga taaggagtta aacttggtaa
     1681 ctaaaaaaac ttacctatat gttccatttg aagagaaaga aagtgctaaa aaagcaggtg
     1741 caaaatggga taaggaagct aaaatgtggt atgctcctaa gggaacagat ctaaaaaatt
     1801 tcaatcaatg gttaaatcaa tcatcattaa caccaaacta tagcaatacg catgatgaat
     1861 ttaaagcttt tttagaaaaa tatgaactca acattgaagg acaacctata atggacggca
     1921 aacttcatcg agttagtgtt ataggagata aaggaagaga aaaaagcgga gcttatgtag
     1981 gatttttaaa cggacaccct gcgggatttg tgcaaaatta caaaactggt attaaagaaa
     2041 attggaaaag tgctaattct tttgaaaata ctaaaaatca agaaataaat ctgcaaaacg
     2101 ctttagaaca taataaagcc ttaaaagagc aaagagataa agaattaaat caagcgtatg
     2161 aaaataccgc tgtgaaatta gaaaatgaat acaacaatgc aagatgggct aattcagaac
     2221 acccgtattt aaaagaaaaa ggctttgata aaaattttta tctcaaacaa gacaaaaacg
     2281 gcaacttatt gattccttta agagatattg aaggcaaata ttgggctacg caaagaatct
     2341 tcgctaatgg tgataaaatg ataggagcta cacgcacagc agaagaaaaa gagcaaggca
     2401 tagaataccc tgcgaaaaag caaggtaatt ttttcttact tggtgcaaag aatttaaata
     2461 atgtcaatga agtttatatt tgtgaaggat ttgcgacaag tgctagtgtc tatgaagcta
     2521 caaaatctcc tactataatg ggagtagatg ctggaaattt agaaattatc gtaacaaata
     2581 taaaagaaaa ataccctaaa atgaatatca ttattgcagg ggataatgat gtaaaaaaag
     2641 aattaaacgg caataagaat gtaggcaaag aaacagcctt aggcatacaa aaaaaatatc
     2701 ccgaagtaaa agttgtatta ccaaatttta caaatcaaga agcgcaaaaa ggtttaagtg
     2761 attttaacga tttaatgaaa agcagaggat tggaagaaat taaaaagcaa ttaaaagaac
     2821 aaattgcaaa gcaactaatg gttgaaaaag ccactactaa agcgctagat aaaaataaag
     2881 gtatcaataa agagataaca gccaaaaaag atatagggat ttctttatga aaaaacaaac
     2941 caatcaaact ttagtttata tattggcaat aactggtatc ttaatagcat ttatcataat
     3001 aagccaaatt gcaacgcaat atttggcaaa atcttttaat tactctccta gtttaggtga
     3061 aactttactt tatggatttt ataatccttt taagtggatt tcttggagtt atacttatta
     3121 ttctttttat cctgattttt tcaaaaaatt cttcatggta atgtttgcag gtattgcgtt
     3181 ttgttttatt gtttttattt tggtgaaact cgcctttttg cgtaaagcaa aagcaataga
     3241 aaatcttcat ggatcggcac attgggctac tttagaagaa gtcaaagaaa gtggcgtatt
     3301 tgataaagat aaaggtgtgt atatcggtgg ttttgaacac aaaaaaacac ttcattattt
     3361 acgacatgat ggtcctgaac acgtaatgct ttttgcacct acaagaagcg gtaaaggcgt
     3421 aagcttactt ttacctacac ttttatcctg ggaagagtct gcacttattt ttgatataaa
     3481 aggtgagcta tgggctttaa ctgcgggttg gcgacaaaaa tacgccaaaa ataaagtatt
     3541 aaaattagat ccgacttgtt tagatgatag tgccgtaaaa tttaatattt tagaagaaat
     3601 aaggctggaa acaatgcacg ag
//
LOCUS       DARAII010000160         3584 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.162, whole genome shotgun sequence.
ACCESSION   DARAII010000160 DARAII010000000
VERSION     DARAII010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3584
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.162"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1198)
                     /locus_tag="SB143_001903"
     CDS             complement(<1..1198)
                     /locus_tag="SB143_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HEF9750398.1"
                     /translation="MIKELTNFIVAKGYSTSSVTIDELDQERDILFLDLKYGFVGEVY
                     LNGDNNTTRLDFGMPLKKGDKFNIYDLDTGIENLNNGARDVKIAVKASENYGYSDIFI
                     NLKSKPPDLILDFDNSGYKAKGEYKASAYLSLSSILNLNDSIRFGFIKGLLKDMSQER
                     ENVYVANYTLPIQSYQLSYSMQYSDNINMIEGYDNSFIKNTDTSLRHKIMLKKILHRT
                     SKDKFSIYANLGIKDDVNEIDNFRLESSSGRYSSIASGVEYSTLAFGGFLFLNLEYEK
                     GIPFLGSKKDSKDSLYKIEFNKVNFNLSYQKSFYANDGLAFLYQNSLGASYSNEPLLY
                     ADKFLIGDEYTVRGFKESSAALDYGAYSNNTIYLQFLNAPKYLRALEPFVGLDMGYGR
                     DYLLPNK"
     gene            complement(1219..1505)
                     /locus_tag="SB143_001904"
                     /pseudo
     CDS             complement(1219..1505)
                     /locus_tag="SB143_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781942.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(1506..>3584)
                     /locus_tag="SB143_001905"
     CDS             complement(1506..>3584)
                     /locus_tag="SB143_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin repeat-containing protein"
                     /protein_id="HEF9750399.1"
                     /translation="KPVEISYESANLETSKSISSTLNSKDDININTNGNIAITGSTLQ
                     ADKSANLNGENKISSSSHSSTSSIAGYKQSSVNTDTSLVSSSQIQSDILNLNAQKNVS
                     IKGSELNGGEIDIKADKVYFIAAQNKTHTESDSIAIGVFANANLELTGNGVAVNYSFV
                     QDKANANTTNSSNSITQGGVRSDLLGTAEAGLEFSKTEKISDELSHVSNTIKGSNINI
                     NANNALDIGGANFEANKDINLRAGEIVSTKYEDTQTQSSTGFGLYIKERIEATSPIAS
                     AINQSAQNAAAKNENLGVNYGIVASQALANTANIFSNNLINTTSNQTLGFKFNQDKSQ
                     SSSENISKINAGDNLNLESTKGSIVLNGVEAKANSINIEAKDNVILNAAKSKNSSSSS
                     SLEIAATNKQTAGYHAVDGGTVGEGIEGFASASYSKSNETQFTNANLNANNININTGK
                     DFTLNGANVKASNDAILNVGGNLEVNSLADSLNSQKYSALLNASGTGGLSSNHLVAGS
                     VSGTLGIGYAKTDKTTVTTQSGISAGNEINGHVNGNLNLQGGILNSDNQKGNLLVDGK
                     VTNSEVSVYEKSDVATIRLSGGTNQSFGGVVHIDDHIDKTGSVNSAANININNNKNHG
                     ISTDTQNTTDTQDHSWAGGTINLNSSISKIKNGISKVTGSDSTSNQPSNQPSKSDGPY
                     INESTQTTRL"
BASE COUNT         1130 a          644 c          475 g         1335 t
ORIGIN      
        1 ctttattggg taaaagataa tccctaccat aacccatatc caatccaaca aaaggctcta
       61 atgctcttaa atatttaggc gcatttagaa attgcaaata aatcgtattg ttactatatg
      121 ctccataatc aagagcagca gagctttctt taaatcccct aactgtgtat tcatcaccga
      181 ttaaaaattt atcagcatac aataagggtt cattagaata actcgcaccc aagctgtttt
      241 gatataaaaa tgctaggcca tcatttgcat aaaaactttt ttgatagctt aaattaaaat
      301 tgactttgtt aaattcgatt ttatataaag aatctttaga atctttttta gaacccaaaa
      361 atggaattcc tttttcgtat tctaaattta aaaacaaaaa tccaccaaat gccagcgttg
      421 aatactcaac cccgctagca atacttgaat acctaccact tgaactctct aaacgaaaat
      481 tatcaatctc attaacatca tctttaatgc ctaaattagc ataaattgaa aatttatcct
      541 tgcttgtgcg atgtaaaatc ttttttaaca tgattttatg tcttaagctt gtatctgtat
      601 tttttataaa agaattatca tatccctcaa tcatatttat attatcacta tattgcatag
      661 aataagacaa ttgataactc tgtatgggca aggtataatt tgccacataa acattttctc
      721 gctcttgact catatctttt aacaaccctt tgataaaacc aaagcgtatg gagtcgttaa
      781 gatttaaaat actacttaaa gaaagatagg cactagcttt atattctcct ttagctttat
      841 agccactatt atcaaagtcc aatatcaaat caggtggctt tgatttaaga ttgataaata
      901 tatcagaata accataattt tcactcgctt taacagcgat tttaacatct cttgcgccat
      961 tgtttaaatt ttctatacct gtatctaaat cataaatatt gaatttatca ccctttttca
     1021 aaggcatacc aaaatctaat cttgttgtat tattatcccc attaagatac acctctccta
     1081 caaaaccata ttttaaatca agaaaaagta tatcgcgttc ttgatcaagc tcatcaatgg
     1141 ttacactaga agttgaatag cccttcgcaa cgataaaatt tgtaagctct ttaatcatat
     1201 tataaatatc attaacactt aaaggctgat taatgtattt tttaaaatat tatttgcttg
     1261 catggtaagc gtatcgtttt tcttaaattg aatttgtttg aaaatataaa ttttatcttc
     1321 agaatcttga ttttctaaat acacatcctt ttcttgctgt tgcttttttt ctaattcatc
     1381 aaattttttt gtatatgtaa ttgttgttgt cttttatcta gtaaattcag cgtttttgca
     1441 gagtcatctg cttgcaataa gcagataaaa ctcataagca aaaaaataat ttttaaaaat
     1501 ttcacctata accttgtagt ttgtgtgctt tcattgatat aaggtccatc tgatttagaa
     1561 ggttggtttg atggttgatt agaagtagaa tcagatccag taaccttgct tatcccattt
     1621 tttattttag agattgaaga attaagattt atagtacctc ctgcccaaga atgatcttgt
     1681 gtatctgtgg tattttgagt atctgtactt ataccatgat ttttgttatt gtttatattg
     1741 atattggctg cagaatttac actgcctgtc ttgtcaatat gatcatctat atgaaccact
     1801 cctccaaagc tttgatttgt cccgccactt aatcttatcg tagccacatc gcttttttca
     1861 tagacactta cttcagaatt tgtaactttt ccatcaacaa gtaaatttcc tttttgatta
     1921 tcagaattta aaattccccc ttgcaaattt aaatttccat taacatggcc attgatttca
     1981 tttcctgcac tgataccact ttgagttgta acagttgttt tatctgtttt agcatatcct
     2041 atacctaaag tgcctgaaac acttcctgca acaagatgat tgcttgataa gcctccagtt
     2101 cctgatgcat tcaataaagc gctatatttt tgagaattaa gactatcagc taaagaattt
     2161 acttccaaat ttccgcctac atttaaaata gcatcattag aagctttaac attggctcca
     2221 ttgagtgtaa aatctttacc tgtgttgata ttgatattat tagcatttaa attcgcattg
     2281 gtaaattgcg tttcgtttga tttagaatac gacgcacttg caaaaccttc aatgccttca
     2341 cccacagttc caccatcaac tgcatgatat cctgcggttt gcttgttagt tgctgcaatt
     2401 tccaaagaag agctagaaga agaattttta gattttgcag catttaaaat aacattatct
     2461 tttgcctcga tattaatgct attagcctta gcttccactc catttaaaac aatacttcct
     2521 tttgtgcttt ctaaatttaa attatcgcct gcattgattt tagaaatatt ctcgctagaa
     2581 ctttggcttt tatcttgatt gaatttaaaa cctagagttt gattagaagt ggtatttatg
     2641 agattgttgc taaatatatt agcagtattg gctaaagctt gagaagctac tattccataa
     2701 tttacgccta aattttcatt cttagcagct gcattttgag ccgattgatt gatagcagaa
     2761 gcgataggac tagtagcttc aattctttct ttaatataca aaccaaagcc tgtactgctt
     2821 tgtgtttgag tatcttcata tttagtacta acaatctctc ctgctcttaa attaatatcc
     2881 ttattagcct caaaattagc tccacctata tctaaagcat tatttgcatt gatattaata
     2941 tttgaacctt tgatagtatt tgaaacatgg gaaagctcat cacttatttt ttccgtttta
     3001 gaaaattcca aaccagcctc tgcagttcct aaaagatcag atcttacccc accttgtgtg
     3061 atactattag aactatttgt ggtattagca tttgctttat cttgcacaaa actataattt
     3121 acagcaaccc catttccggt taattccaaa ttagcattag caaaaacccc aatagcaatc
     3181 gaatcgcttt ctgtatgggt tttattttgc gcagctataa aataaacctt atcagcctta
     3241 atatcaatct cgcctccatt aagctcactt cctttaatgc ttacattttt ttgagcattt
     3301 aaatttaaaa tatcggattg aatttgtgat gaagacacca aagaagtatc agtatttaca
     3361 gaactttgct tatatccagc aatagaactt gttgaagaat gagaagaact tgaaatttta
     3421 ttttctccat ttaaattagc agatttatcc gcttgtaaag ttgagcctgt gattgctata
     3481 ttgccgttgg tattaatatt aatatcatct tttgaattta aagtactgct tattgatttt
     3541 gaagtttcta aattagcact ttcataactg atctctacgg gttt
//
LOCUS       DARAII010000161         3513 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.163, whole genome shotgun sequence.
ACCESSION   DARAII010000161 DARAII010000000
VERSION     DARAII010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3513)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3513)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3513
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.163"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..833)
                     /locus_tag="SB143_001906"
     CDS             complement(<1..833)
                     /locus_tag="SB143_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750400.1"
                     /translation="MKKQIIGSILLCSSLFAIDDNLTKEQIFHNKYLKDKAAMQNKIS
                     VDELYKNTKDFNLSSMRQDMNLTKDEIKKRYDIKFNQSAEANKSAKIVSDMRRSDAFE
                     KKIVDNQNYILYDKSMNFNEYLGEYSQNTKDMINQMENSKHLISTNKYLNPNEKIFIV
                     ISSSMDKSSIQNYFKLLENVKTDITFVLRGLVGNDARYINPTFSYLQDLLVKDPNNKN
                     KEDKNNFYYYNIEINPKVTRRFNITKVPAVIFIKNYDPIVEDYQKMTNTPADTNEEYF
                     VA"
     gene            complement(849..1511)
                     /locus_tag="SB143_001907"
     CDS             complement(849..1511)
                     /locus_tag="SB143_001907"
                     /inference="COORDINATES: protein motif:HMM:NF024949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEF9750401.1"
                     /translation="MFIKELRERLNLTQSEFAKNLNINQAIVSRYENKKLRPTSEFII
                     RLIKTFNANPNFIFFGKEPCLNENTYKNEISQELNQLIDELSLYENEKNIISELENSA
                     LEKIISLVSDKEIWEKLFSLLFKIDRKLYTITLFICRVSKRLEEKIEAHKAYLASIIN
                     SFDDKDFSKLNECMKMDLITLFNEKFTEEEANIIIEDCLVVFKHIEKTAPIHKMIELG
                     KN"
     gene            complement(1534..2532)
                     /locus_tag="SB143_001908"
     CDS             complement(1534..2532)
                     /locus_tag="SB143_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraU family protein"
                     /protein_id="HEF9750402.1"
                     /translation="MKFKAHLISAVAAAYLFFHPSETKAVCAPNPSQILISLTELCWE
                     CIFPISIAGIQVIQGPMPDPQGSVGSPICICPAPPPLFFRIGIPIGYFEPSRMLDSVK
                     DPYCFVGLGFGMPEMLTASKGTKGDGHDRARVFYQSHYYIYPIIGMVGILIDAACMNI
                     TSGVDIAYMTEVDPLWQDDELTALINPEALLFGNPISNFACMADSVSAQANVALDPLF
                     WCKGSWGNAYPLSGNTGSKDYVEDAASVAGSMIYKLHRELILWESAGQLGLCGEYPMP
                     IWRKSSYRLQILAPVPHPMGMGIGQSGILWSFAKNYPVAGDNFTFMVFKKKECCAF"
     gene            complement(2549..3223)
                     /locus_tag="SB143_001909"
     CDS             complement(2549..3223)
                     /locus_tag="SB143_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein ParM"
                     /protein_id="HEF9750403.1"
                     /translation="MKKIFFSTIILASVLYAGGSKEMVLGKTKDFAERDMIELIQEFI
                     EKNKAQIEQKAFKTREQARENVKNYQPKGLIPLKPALEDKIFYPDLTYTLDQDIKNAN
                     GDILYPKGFKFNPADYVKLSYAMVVINGNNKKEVEWFKKSGFSNQVSYRLLLSEGSYY
                     DLNQELKQEVFYLNPQIREKFKIEKTPSIIKQIDNKIQIHEICIPCMENNKTKIVDNN
                     LSIKEI"
     gene            complement(3236..>3513)
                     /locus_tag="SB143_001910"
     CDS             complement(3236..>3513)
                     /locus_tag="SB143_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750404.1"
                     /translation="DLNKEINEKQKGIYRSLQSDYGVNVEYVNVDERKDLISKFKLAT
                     TPENFFVYRNSKGEAIWQRVKSGLTNKDDIINNTLFLFDNAILEKDK"
BASE COUNT         1106 a          580 c          460 g         1367 t
ORIGIN      
        1 gccacaaaat attcttcatt ggtatctgca ggcgtgtttg tcattttctg ataatcttct
       61 acaataggat catagttttt aataaaaatc acagcaggaa ctttagtaat attaaatctt
      121 ctagttactt ttggattaat ttcaatattg taataataaa aattattttt atcttcttta
      181 tttttgttat tagggtcttt aactaaaaga tcttgcaaat aagaaaaagt aggattaata
      241 tatcttgcat catttccaac caatcctctt aaaacaaagg ttatatcggt ttttacattt
      301 tcaagcaact taaaatagtt ttgaatgctt gatttatcca ttgaagaaga gattactatg
      361 aatatttttt cattaggatt taaatatttg tttgtgctga taaggtgttt agaattttcc
      421 atttgattaa tcatatcttt agtattttgc gaatactcgc caagatattc attaaaattc
      481 atgcttttat catacagaat atagttttgg ttatcgacaa tctttttttc aaaagcatcg
      541 cttcttctca tatcggaaac aattttagca cttttattag cttctgcgct ttggttaaac
      601 tttatgtcat atcttttttt tatttcatcc tttgttaaat tcatatcttg tctcatagaa
      661 ctaaggttaa aatctttagt gtttttataa agctcatcga ctgaaatttt attttgcatt
      721 gcagctttat cttttaaata tttattatga aatatttgtt cttttgtcaa attatcatcg
      781 attgcaaata atgatgaaca tagcaaaata gaacctatga tttgtttttt catttctttc
      841 ctttcttgtt agttttttcc aagctctatc attttatgaa taggagctgt tttttcaata
      901 tgcttaaaaa caaccaagca atcttcgatt ataatgtttg cttcttcttc agtaaatttt
      961 tcattaaaaa gtgtaattaa atccattttc atacactcgt ttaatttgct aaaatcttta
     1021 tcatcaaagc tattaataat tgaagctaga tatgctttat gtgcttcaat tttttcttca
     1081 agccttttgc ttaccctaca aataaacaaa gttatagtgt ataattttct gtctatttta
     1141 aataataatg aaaatagttt ttcccaaatt tctttatcag aaacaagaga aataatcttt
     1201 tctaaggcac tgttctcaag ttctgaaata atattttttt cattttcata caaagacaat
     1261 tcatcaatta attgatttaa ttcttgtgaa atttcatttt tgtaagtatt ttcattcaag
     1321 caaggctctt ttccaaaaaa aataaagttt ggatttgcat tgaaggtttt gatcaatctt
     1381 ataataaact cgcttgttgg tctcaatttt ttattttcgt accttgaaac aattgcttga
     1441 ttgatgttta agttttttgc aaattctgat tgagttaaat ttaatctttc tctaagttct
     1501 tttataaaca caacaaaacc tccattttat atactagaat gcacaacact cttttttctt
     1561 aaaaaccata aaagtgaaat tatctcctgc tacaggataa tttttggcaa agctccataa
     1621 gataccactt tgtcctatgc ccatacccat aggatgtgga acaggtgcta aaatttgcaa
     1681 tctataggaa gattttctcc aaataggcat agggtattct ccgcaaagcc ctaattgtcc
     1741 tgcactttcc caaagtatta attctctatg aagtttataa atcatagaac ctgcaacaga
     1801 agcagcatct tccacataat cttttgagcc tgtattacct gaaagtgggt aagcattccc
     1861 ccaagaaccc ttacaccaaa acaatggatc taaagccaca ttggcttgag ctgatacgct
     1921 atctgccata caagcaaaat ttgaaatagg attgccaaat aataaagcct caggattgat
     1981 caaggctgtt agttcatcat cttgccataa gggatctact tcggtcatat aagctatatc
     2041 cacgccactt gtaatattca tacatgcagc atcaattaaa attcctacca tgccaataat
     2101 aggatatata taatagtgag attgataaaa gactcttgct ctatcatgtc catcaccttt
     2161 ggttcctttt gaagctgtaa gcatttcagg cataccaaaa cctagtccca caaaacaata
     2221 aggatctttt acgctatcta acattctact aggctcaaaa tatcctatag gaattcctat
     2281 gcgaaaaaat aaaggtggtg gagcagggca tatacatata ggagagccta ctgaaccttg
     2341 cggatcaggc ataggtcctt gtataacttg tatccctgcg atactaatag gaaaaataca
     2401 ttcccaacaa agttctgtta ggcttataag tatttgactt ggatttggag cgcaaacagc
     2461 tttagtctcg cttgggtgaa aaaataaata agcagcagct actgcgctga ttaaatgagc
     2521 cttgaatttc atattaattt cccttttttt aaatttcttt tatgcttaaa ttattgtcaa
     2581 cgattttagt tttattattc tccatgcaag gaatacaaat ctcatgaatc tgtatcttat
     2641 tgtcaatttg ttttataatg cttggagttt tttctatctt aaatttttct cgaatttgtg
     2701 gattcaaata aaatacttct tgcttaagct cttggtttaa atcatagtaa cttccttctg
     2761 agagcaataa tctataagaa acttgattag aaaaaccact ttttttaaac cattcaactt
     2821 cttttttatt gttaccatta ataactacca ttgcatatga aagctttaca taatcagcag
     2881 gattaaattt aaaacccttt ggatataaaa tatctccatt tgcattttta atatcttgat
     2941 ccaaagtgta tgttaagtca ggataaaaga ttttatcctc aagggcaggt tttaatggaa
     3001 ttaatccttt aggttgataa tttttgacat tttctcttgc ttgttctcga gtcttgaaag
     3061 ctttttgttc tatttgtgct ttattttttt caatgaattc ttgtataagc tctatcatat
     3121 ctctttctgc aaaatcttta gttttgccta aaaccatttc tttgctgccg cctgcgtata
     3181 gaacactagc taaaattata gtactaaaaa atattttttt catatctatc cttaattatt
     3241 tatctttttc taaaattgca ttatcaaata aaaataaagt attgttgatg atgtcatctt
     3301 tgtttgtaag tcctgattta actctttgcc aaattgcttc tccttttgaa tttctataaa
     3361 caaagaaatt ttcaggagtt gttgcaagtt taaatttcga aattaagtct ttacgctcat
     3421 ctacattaac atattcaaca tttacaccat aatcactttg tagcgagcga tatatgcctt
     3481 tttgtttttc attaatttct ttatttaaat cgc
//
LOCUS       DARAII010000162         3482 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.164, whole genome shotgun sequence.
ACCESSION   DARAII010000162 DARAII010000000
VERSION     DARAII010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3482
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.164"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..387
                     /locus_tag="SB143_001911"
     CDS             <1..387
                     /locus_tag="SB143_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEF9750405.1"
                     /translation="DFKRDTLRTLNAAFKQVEVDERIELSDERILKIIASEIKKRKDA
                     IELYSKGGREDLAQKEQKEIALFESYLPQQLSDEELQAALKEMIANLGVSSLKDQGLV
                     MKEAKAKFGARVDGKRLNVTLRELLN"
     gene            465..2165
                     /locus_tag="SB143_001912"
     CDS             465..2165
                     /locus_tag="SB143_001912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEF9750406.1"
                     /translation="MRKISGSAMICEALKEENVKIVFGYPGGAALNIYDEIYLQKYFK
                     HILVRHEQAAVHAADAYARMSGEVGVAVVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIAKSGRKGPVHID
                     VPKDVSAALGIWDYPKEISMKTYKPIYKGNSKQIKKLAENLEEAKRPLFYLGGGCIAS
                     NAANEIRELVKITQIPAVETLMALGTLRSDDELNLKMAGMHGSYTANMALSECDLLVA
                     IGARFDDRITGKTSEFAKHSKIVHIDIDPSSISKIINAHFPIVGDIKEVVKELLEELK
                     KNQFKSNIHEWRQTLKRYDELYPLAYEDSDEVLKPQWVIQECAKLAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYENGIKTINIILNNSFLGMVRQWQSMFYEEHFSATDLSLQADFIKIAEGFGCE
                     GYNIKTKDEFRTAFKQALESNKTSLLNVFIDRFEDVLPMVPAGGAIYNMILPKLKDKQ
                     "
     gene            2162..2626
                     /gene="ilvN"
                     /locus_tag="SB143_001913"
     CDS             2162..2626
                     /gene="ilvN"
                     /locus_tag="SB143_001913"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEF9750407.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLPGGEFS
                     RINIVTFGDERVFEQIVKQLHKLIPTYKVIERDEFIEKEMALVKIPLSENLGGLDAVL
                     KAYNGTIANSNENFLFLLVADDTNRIENFLKTIKKYNPSDIVRSGSVLMELK"
     gene            2623..>3482
                     /gene="lpxD"
                     /locus_tag="SB143_001914"
     CDS             2623..>3482
                     /gene="lpxD"
                     /locus_tag="SB143_001914"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEF9750408.1"
                     /translation="MRLKEIAEFLSLEYEGEDIEITALNSLLRANFTELTYCDGERNI
                     KDIPNTGAAAILVAKEYENLVPKDTKALITQSPHLCFAFLSKIFAKPLFSNAKEKVQN
                     IAKSAKIMPNVYIGNNVNIGENVVIMAGAYIGDNVSIGEESIIHPNVVIYNDSKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVILEDFVEIGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCDIGQNCIIVAQTGISGSSELGRNVVMGGQSATSGHLRIGDFST
                     IAARGGVSKNL"
BASE COUNT         1218 a          457 c          742 g         1065 t
ORIGIN      
        1 gattttaaac gcgatacttt aagaacgcta aatgccgcgt ttaaacaggt cgaagtagat
       61 gaaagaatag agctaagtga tgaaagaatt ttaaaaatta tcgcaagcga gattaaaaag
      121 cgcaaagatg ctatcgagct ttattctaaa ggtggaagag aggatttggc acaaaaagaa
      181 caaaaagaaa tagcactttt tgaaagttat ttacctcagc aattaagcga tgaggaattg
      241 caagcagctt taaaagaaat gattgcaaat ttaggggtta gttctttaaa agatcaaggt
      301 ttggtgatga aagaagcaaa ggctaaattt ggagcaaggg tggatggaaa aagattaaat
      361 gtaacactta gagagctttt aaattaaaat tttcaaactt ttttatattt tatctaaata
      421 aaagattgaa ttattgttat aatttgattt tcaaaggagg ccttatgaga aaaataagcg
      481 gttcggcaat gatttgcgaa gctttaaaag aagagaatgt taagatagtt tttggttatc
      541 ctggtggagc agccttaaat atttatgatg aaatttattt gcaaaagtat tttaagcata
      601 ttttagtgcg tcatgagcaa gctgctgtac atgcagccga tgcttatgca agaatgagcg
      661 gtgaagtggg tgtagctgtt gttacaagtg gacctggttt tactaatacc atcacaggac
      721 ttgcgacagc ttatagtgat tctatacctt tggttttgat ttcaggtcaa gttgcaaatt
      781 cattaatagg caccgatgct tttcaagaaa ttgatgcggt aggaatttct cgcccctgtg
      841 taaaacataa ttatttagtc acttgcatag aagaatttcc aagaatatta aaagaggctt
      901 tttacatagc aaaaagtgga agaaaaggtc ctgtgcatat tgatgtacca aaagatgtaa
      961 gtgcagccct tggtatttgg gattatccaa aagaaatttc aatgaaaact tataagccta
     1021 tttataaagg aaattcaaaa caaattaaaa aattggctga aaatttagaa gaagctaagc
     1081 gtcctctttt ttaccttgga ggcggatgta tagcatcaaa tgcggctaat gagatcagag
     1141 aacttgttaa gattactcaa attccagccg ttgaaacctt aatggctctt ggaactttaa
     1201 gaagtgatga tgagctaaat cttaaaatgg caggaatgca tggaagttat acagctaata
     1261 tggctttgag tgaatgtgat ttattggtag caataggcgc gcgttttgat gataggatta
     1321 caggtaaaac aagtgaattt gccaagcatt ctaaaatagt gcatattgat atagatccaa
     1381 gttctatttc taagattatc aatgcgcatt ttcctatagt tggagatatt aaagaagttg
     1441 ttaaagagct tttggaagaa ttgaaaaaaa atcaatttaa gtcaaatatc catgagtgga
     1501 ggcaaactct taagcgttat gatgagcttt atcctttagc ttatgaagat agcgatgagg
     1561 ttttaaaacc tcaatgggta atacaagaat gtgcaaaact tgctccagat gcaaggataa
     1621 tcactgatgt aggacaacat caaatgtggg ttgcacaatt ttatcctttt aattacccaa
     1681 gacagcttgc aaccagtggc ggacaaggaa cgatggggta ttctttacct gctgctttgg
     1741 gtgcaaagct tgcggtagga gaagaagttg ttataaattt tgtgggtgat ggttctgttt
     1801 taatgaatat tcaagaactg atgacagctt atgaaaatgg tattaaaacc ataaatatta
     1861 ttttaaacaa ttcattcttg ggaatggttc gccaatggca aagcatgttt tatgaagagc
     1921 atttttcggc tacagattta agcttgcaag cagattttat aaagatagct gaaggttttg
     1981 gatgtgaagg atataatata aaaacaaaag atgagtttcg cacagcattc aagcaagctt
     2041 tagagtccaa taaaacaagc ttgcttaacg tatttataga tcgctttgaa gatgtgcttc
     2101 ctatggtgcc agcgggtggg gctatttata atatgatttt accaaaatta aaggataagc
     2161 aatgagacgt gttttatcgg ttatagtttt aaatgaacat ggtgtgcttt ctcgtatcgt
     2221 aggacttttt tcaggtaggg gatataatat cgatagctta accgtcgctc ctttaccagg
     2281 tggagaattt tctcgtatca atatagttac ttttggagat gagcgtgttt ttgagcaaat
     2341 agtaaagcag ttgcataaac ttatacctac ttataaggta atagaaagag atgaatttat
     2401 agaaaaagaa atggcgcttg taaaaattcc actcagtgaa aatttaggtg gacttgatgc
     2461 cgttttgaaa gcttataatg gtactattgc aaatagcaat gaaaattttc ttttcttgct
     2521 tgtagctgat gatacaaatc gtatagaaaa ttttctaaaa acaattaaaa aatacaatcc
     2581 tagcgacatt gttcgcagtg gatcggtttt aatggagctt aaatgagatt aaaagaaata
     2641 gcggaatttt taagtttaga atacgaaggc gaagatatcg aaataacggc tttaaattct
     2701 ttattgaggg cgaattttac cgagcttact tattgtgatg gtgaaagaaa tattaaagat
     2761 atacccaaca caggagcagc agcaattttg gttgctaaag aatatgaaaa tttagtgcct
     2821 aaagatacaa aagctctcat tactcaaagt ccgcatttgt gttttgcttt tttgagtaaa
     2881 atttttgcta aacctttatt tagcaacgca aaagaaaaag ttcaaaatat agcaaaaagt
     2941 gcaaaaatca tgccaaatgt ttatataggc aataatgtca atataggcga aaatgttgtc
     3001 attatggcag gagcttatat aggagataat gttagcatag gcgaagaaag cattatccat
     3061 cctaatgtgg tgatttataa tgatagcaaa attggcaaaa aatgtcatct acttgcaaat
     3121 tgcgtaatag gaagtgatgg atttggttat gcgcacaata aaaatggaga gcattataaa
     3181 atctatcaca atggtaatgt tatcttagaa gattttgttg aaataggagc ttgcacaaca
     3241 atagatagag cagtgtttga tagcactatc attaaagcag gaacaaaagt agataatctt
     3301 gtccaaatag gtcataattg cgatatagga caaaattgca ttatcgttgc acaaactgga
     3361 atttcgggtt caagtgagct tggacgcaat gtggttatgg gtggacaaag tgcaacgagc
     3421 ggccatttaa gaatagggga ttttagcact attgcagcac gcggtggtgt gagtaaaaat
     3481 ct
//
LOCUS       DARAII010000163         3428 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.165, whole genome shotgun sequence.
ACCESSION   DARAII010000163 DARAII010000000
VERSION     DARAII010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3428
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.165"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..480)
                     /locus_tag="SB143_001915"
     CDS             complement(<1..480)
                     /locus_tag="SB143_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HDOD domain-containing protein"
                     /protein_id="HEF9750409.1"
                     /translation="MNNLLEKNINEVNEMLIKSLDDLPPLPETIQKLQEYIATHGSNI
                     VIDEIANIISTDPLITANLLHLTNSAYYGFSKEIKTVNQALVLLGVSNVKNMIIADYA
                     KSSFVINLSPYGIETDRFLALIHEQTNFISTWLMEEDKMLCHNLIPCVMMLRLGIMVF
                     "
     gene            complement(499..939)
                     /locus_tag="SB143_001916"
     CDS             complement(499..939)
                     /locus_tag="SB143_001916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEF9750410.1"
                     /translation="MKAIFFLTSLLFANLLFAQKNYFIQAGEKFGINPQLLWTIAYKE
                     SRLTPNIISKPNKNGTYDIGIMQINSIHLPRLKKQYGINENDLLRPKINIFVGAEILK
                     ICLDKHGLNEEGITCYNGRIINNPYGKEVIKLLKKARITNGKIN"
     gene            complement(936..1232)
                     /locus_tag="SB143_001917"
     CDS             complement(936..1232)
                     /locus_tag="SB143_001917"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750411.1"
                     /translation="MKKRRADLLKKHNSKIVLADTLESEAMVDLAMKANDIFLKLKKT
                     AGVGLDFKDADEMLMLWNLVLVKSSQTLEQISQKIDMKYDEPFTITLAREKLEK"
     gene            complement(1229..>3428)
                     /locus_tag="SB143_001918"
     CDS             complement(1229..>3428)
                     /locus_tag="SB143_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEF9750412.1"
                     /translation="YSREIACFLIIEQAFFILLLWYMNNKLKNPSNDKEVAHIHIKEL
                     AKIWLEDDNTPMIDTSRQATEKANIIMVNKQVRDSIISLANLKQDISQIFLNDIIKPN
                     LEKIHPKHLEMIIKLLQLLEENIACPSVVQLFEGDPNSAYGKISARRKDGERIDTVTL
                     DGKTRFDIYEKISLLRHSLNVAYKIIELLNESKEYKSFKKTLFGKAIIVALGHDIGKI
                     NNFTLRESYIKEQRLKGDSKQAFMNLKRMQEHQKISYIIFYELFKNYPDLKELATVVQ
                     GHHLGSIDKDDKLLKLLIDADKQTRDYELDAYLQNSEEFEKIRNKELESIITTVPQKN
                     NLAYENTQKTISKTPEKKTQTIQNKTQNESTENEISILDLKELQDRFVLNFNEFKKQF
                     FLFVAEDNSKEFQELVYTFAFKNTEKEFYKNKKDLFILVECGVINGNRTDTMNYFYDL
                     SDEINKKLNKKIKIGFAMFRDCKDINEAIDGCKKALEYAKNNNQVVYYDYKDLKISNS
                     DKILISDNAEVKITESVKIQEKTDTITTNNQVNTLEEIDTLKQKTIDTQIIENMFEMI
                     ESKVQEVEYSLSQEENFDIPLIEAKFIEIIKSKINTFKRKGFAKIPQAISFKKFVLFS
                     HECLLESLAKALNVKNENLNAKLNFLIRYYRNHPDENKRLIWFVNVDKGFYYSTYLLR
                     FDEKQDEVFFCVPFDGKRAFGMSISELSIHKDNSGLRNCIVKPYVKKEEK"
BASE COUNT         1074 a          528 c          430 g         1396 t
ORIGIN      
        1 aaataccatg atgcctaatc ttagcatcat aacacatgga attagattat ggcacaacat
       61 tttatcttct tccattagcc aagtagaaat aaaattggtt tgctcatgaa ttaaagctaa
      121 aaagcgatca gtttctatac cataaggact tagattgatt acaaaagaac tttttgcata
      181 atcagcaata atcatatttt taacattgct tacccccaaa agaactaagg cttgattaac
      241 agttttaatt tcttttgaaa aaccataata agctgaattg gttaaatgca ataaattagc
      301 tgtaattaaa ggatctgtgc taataatatt tgctatttca tcaataacaa tattgcttcc
      361 atgtgtggca atatattctt gcaatttttg aatagtttca ggcagtggtg gcaaatcatc
      421 caaactttta atgagcattt cattaacctc attgatattt ttttctaata aattattcat
      481 tatgtctcct tttgaaattt aattaatttt tccatttgtt attcttgctt ttttgagtaa
      541 tttaattact tcttttccgt agggattgtt gataattctt ccattgtagc aagtaatacc
      601 ttcttcattt aatccgtgtt tgtctaaaca tatttttaat atttcagctc ctacaaaaat
      661 attaatttta ggtcttaata aatcattttc attaatacca tattgttttt ttaatcttgg
      721 taaatgaatg ctattaattt gcataatgcc tatatcataa gtaccatttt tatttggttt
      781 gctaataata ttgggggtta agcgactttc tttataagca atggtccaaa gcaattgcgg
      841 attgattccg aatttctctc ctgcctgtat aaaataattt ttttgagcaa agagcaaatt
      901 agcaaaaagt aaggaggtta aaaaaaagat tgctttcatt tttctaattt ctcacgagct
      961 aaagttattg taaagggttc atcatacttc atgtctattt tctgtgaaat ttgttcaaga
     1021 gtttgtgagc ttttgactaa tactaaattc cacaacatta gcatttcatc tgcatcttta
     1081 aaatccaaac ccacgcctgc agttttttta agttttaaaa aaatatcatt ggctttcatt
     1141 gctaaatcaa ccatagcttc agattccaat gtatccgcaa gcacgatttt tgaattgtgt
     1201 tttttaagta aatcagctct tctttttttc atttttcctc cttttttaca taaggcttaa
     1261 caatacaatt tcttaatccg ctattatcct tatgaatgct aagctctgaa atactcattc
     1321 caaaagctct tttaccatca aaaggaacac aaaagaaaac ttcatcttgc ttttcatcaa
     1381 atcttaaaag ataagttgaa tagtaaaagc ctttgtccac attaacaaac caaatcagtc
     1441 ttttgttttc atcaggatga tttctataat aacgaattaa aaaattaagt ttggcgttca
     1501 aattttcatt tttaacatta agtgctttag caagactttc taaaagacat tcgtggctga
     1561 ataacacaaa ttttttaaag cttatagctt gcggaatctt agcaaaacct ttacgcttaa
     1621 aagtgttaat tttggacttt ataatttcaa taaattttgc ttcaattagc ggaatgtcaa
     1681 aattttcttc ttgacttaaa gaatattcaa cttcttgaac cttgctttca atcatttcaa
     1741 acatattttc tatgatttga gtatcaatag tcttttgttt taatgtatca atctcttcta
     1801 atgtattaac ttgattattt gtagtgattg tatctgtttt ttcttggatt tttacactct
     1861 cagttatctt aacttctgcg ttatctgaaa ttaatatttt atcactattt gatattttta
     1921 aatctttata atcataataa acaacctgat tattattttt ggcgtattct aatgctttct
     1981 tgcaaccatc aatagcttca tttatatctt tgcaatctct aaacatagca aatcctattt
     2041 taatcttctt atttaatttt ttattaatct catcgctcaa atcataaaaa taattcatgg
     2101 tatcggttct gtttccatta atcacgccgc attcaacaag tataaataaa tcttttttat
     2161 ttttataaaa ttctttttct gtatttttga aagcgaatgt ataaacaagc tcttggaatt
     2221 cttttgaatt atcttcggct acaaaaagga aaaattgctt tttaaattca ttgaaattaa
     2281 gaacaaatcg atcttgaagt tcttttaaat ctaaaattga aatttcattt tcagtgcttt
     2341 cattttgtgt tttgttttga atggtttgag ttttcttttc tggtgtttta gaaattgttt
     2401 tttgggtgtt ttcatacgct agattatttt tttgcggaac tgttgtaata atactttcta
     2461 attctttatt tcttattttc tcaaactctt cgctattttg caaataagca tctaattcat
     2521 aatctcttgt ttgtttgtcc gcatcaatta ataatttcaa aagtttatca tctttatcaa
     2581 tactacctaa gtgatgccct tgaacaacgg tagcaagttc ttttaaatca ggatagtttt
     2641 taaagagttc gtaaaagatg atataggaaa ttttttgatg ttcttgcatt ctttttaaat
     2701 tcataaaagc ttgttttgaa tcacctttta atctttgttc tttgatatag ctttctctta
     2761 gtgtaaaatt attaatcttg cctatatcat gtcctaaggc tacaataatt gctttaccaa
     2821 acaatgtttt tttaaaagac ttgtattctt tactttcgtt tagcaactca ataatcttgt
     2881 aagctacatt taaagaatgt cttaaaagac taattttttc atatatatca aagcgagttt
     2941 ttccatcaag agtaactgta tcaatccttt ctccatcttt tcttctagca gatatttttc
     3001 cataagcgct attaggatct ccttcaaaaa gttgcacaac acttggacaa gcaatatttt
     3061 cttcgagcaa ttgaagtaat ttaataatca tttcaaggtg ctttggatgg atcttttcga
     3121 gattaggttt aataatatca tttaaaaaga tttgacttat gtcttgtttt aaattagcta
     3181 aagaaataat agaatcacgc acttgcttat ttaccatgat aatattagct ttttcagtgg
     3241 cttgtctgga agtatcgatc ataggagtat tgtcatcttc aagccaaatt tttgcaagct
     3301 ctttaatatg tatatgtgct acttctttat catttgatgg atttttgagt ttattgttca
     3361 tataccataa caatagaata aagaaagctt gttctatgat tagaaaacaa gctatttctc
     3421 ttgaatac
//
LOCUS       DARAII010000164         3413 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.166, whole genome shotgun sequence.
ACCESSION   DARAII010000164 DARAII010000000
VERSION     DARAII010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3413)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3413)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3413
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.166"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     regulatory      complement(121..225)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            complement(248..1009)
                     /locus_tag="SB143_001919"
     CDS             complement(248..1009)
                     /locus_tag="SB143_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEF9750413.1"
                     /translation="MSLQQVDQIISILSKQSKPYEWVIKEFKKIEELKDYELDLETFE
                     LLGLGLTLDKNNIFTLQTRTKKIKEEIFCIVDIESTGGIKNGQILEIGAVKIKNLQEI
                     DRFSSLVQVKEIPENITELTGINLDMVKDAPSLTKVLNDFRLFLKDSIFVAHNVRFDY
                     GFISKALNECGFGILLNRRICTIEFAQCCIESPRYKLDVLKELLGIKNAHHRALNDAL
                     AAAEIFKHCLGKLPYHIKTTEELINFTKTSRIKQK"
     gene            complement(1006..1653)
                     /gene="rpe"
                     /locus_tag="SB143_001920"
     CDS             complement(1006..1653)
                     /gene="rpe"
                     /locus_tag="SB143_001920"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEF9750414.1"
                     /translation="MYVAPSLLSANFLKLEEEIKAIDEAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTITEIPLDVHLMVKDVGKFVDLFIPIKPKFISFHIESEAHPIRLCEYI
                     RSQGIHPAIVLNPHTPINSIKHMIDFVDMVLLMSVNPGFGGQKFLPLVYDKIKELRRL
                     IDEKNAKVFIEVDGGVNGLNASDLEAAGADILVAGSYIFSSNDYKTSISSLKLEF"
     gene            1791..1985
                     /locus_tag="SB143_001921"
     CDS             1791..1985
                     /locus_tag="SB143_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEF9750415.1"
                     /translation="MARICQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            2182..2397
                     /locus_tag="SB143_001922"
     CDS             2182..2397
                     /locus_tag="SB143_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEF9750416.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFERHNELDDQIKDAEEGRNLLS
                     DIEISNLKKEKLHIKDQLNQYLANYKK"
     gene            2409..>3413
                     /locus_tag="SB143_001923"
     CDS             2409..>3413
                     /locus_tag="SB143_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEF9750417.1"
                     /translation="MFGSKINHTELQDIKNENQNLTQQLEKIKAENLELKDKISLLEQ
                     EALESKLKTDLLNVLLSGVLKNITIVQSDMLENVNKAEIISNYSKTSLAEMDELNHIA
                     NSINASLSDITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISINSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFAKSGQE
                     LADHTSCRLGKWVASTGKERFGDSKSFIKINEPHQKVHENMNSAIRIANTEDVSLSNT
                     Q"
BASE COUNT         1258 a          544 c          502 g         1109 t
ORIGIN      
        1 cttcttcttt ttgagcaaca atctccattt ctttggtaaa aataccttct ttggcataaa
       61 gcatttgagt tttcatattt atcctttgaa aaatttggat aaatgagggt gcaagtaaat
      121 tgtagaaagt ataaatcttc ccgacgctag cattatctag ttccggttcg gtctaagctt
      181 ttagcttact ctcagcctgt atcacaagct cccgtcattt atgttttaat tatactcttt
      241 aaatatttta tttttgcttt atgcgagaag tcttggtaaa atttataagt tcttcagtgg
      301 ttttgatatg ataagggagt ttgccaagac aatgtttaaa aatttcagcc gcagccaaag
      361 cgtcgtttaa agctctatgg tgggcatttt ttatccctaa aagctctttt aaaacatcta
      421 atttatatct tggactttct atacagcatt gcgcaaattc tatggtgcaa atacgacgat
      481 taagcaaaat tccaaaacca cactcattta aagccttgga aataaaacca taatcaaaac
      541 gcacattatg tgcgacaaaa atactgtctt ttaaaaaaag tctaaaatca tttaaaacct
      601 tagtcaaact cggtgcatct tttaccatgt ctaaattaat tcctgtaagt tctgtaatat
      661 tttcaggaat ttcttttacc tgtaccaaag agctaaaacg atcgatttct tgcaaatttt
      721 ttatcttaac tgcacctatt tctaaaattt gtccgttttt aatcccgcct gtactttcta
      781 tatctacaat gcaaaaaatt tcttctttga tcttttttgt acgcgtttgc aaggtaaaaa
      841 tattattttt atctagagtt aaacccaaac ccaaaagctc gaaagtttct aaatcaagtt
      901 cataatcttt taattcttca atctttttaa attctttaat tacccactca tagggcttgc
      961 tttgcttact taagatagaa ataatctgat caacttgctg caaactcaaa attcaagctt
     1021 taaagatgaa attgaagttt tataatcatt tgaagaaaaa atataacttc cagcgactaa
     1081 aatatctgct cccgcagctt ctaaatcgct tgcatttaag ccattaaccc caccatcaac
     1141 ctctataaaa accttagcat ttttttcatc gatcagtctt cttaattctt tgattttatc
     1201 atatactaaa ggtaaaaatt tttgtccgcc aaagccagga ttaacactca ttaaaagcac
     1261 catatctaca aagtctatca tatgttttat ggaatttata ggagtatgtg gatttaaaac
     1321 aatagcagga tggattcctt gacttcttat atactcgcaa agtcgtatag ggtgggcttc
     1381 actttctata tgaaaagaaa taaatttagg cttgataggg ataaaaagat ctacaaattt
     1441 acccacatct tttaccatta aatggacatc taaaggtatt tcggtaatgg ttgaaatttt
     1501 ttctattaca cagggtccaa aggttaaatt tggaacaaaa tgcccgtcca taacatcaat
     1561 gtgcaaaaga tcagctcctg cttcatcaat tgctttaatc tcttcttcta gttttaaaaa
     1621 attggccgat aataaactcg gagctacata cataagctta gcctcgtaaa gtaaaaaatt
     1681 ttaaagaaaa acattttatc tatttataaa ttaaaaatag tataaatatt tgaatatttt
     1741 aagcttaaat ttgataaaat cttgatttaa aatttccaaa ggatgcaaat atggcaagaa
     1801 tatgtcaaat cacaggtaag ggaccaatgg tgggtaataa tgtcagccat gctaacaata
     1861 aaacaaaaag acgcttttta cctaatctta gaacagttcg tgtaacccta gaagatggca
     1921 ctacaagaaa aatgagaatt gctgcctcta ctttaagaac tttaaaaaaa caaaactcta
     1981 aataaactct tgaggattcg tcctcaatga cttaaaaatc ttcattataa ttatttaatt
     2041 taacaaatcg ctaatttgta acatatttaa gatttattga attatttagc attttttaag
     2101 ccaaaaatat catttaatta gttataatgt aacatatcgt ttaatatttt ttaaattgta
     2161 tcaattttta aggagaattt tatgttacat gaatatcgtg aacttatgtc agagttaaaa
     2221 ggaaaagatg cgcattttga taaattattt gagcgccata atgaacttga cgatcaaatt
     2281 aaagatgcag aagaaggaag aaatttatta agtgatattg aaatttcaaa tcttaaaaaa
     2341 gaaaaattac atattaaaga tcagttaaac caatatctag caaactataa aaaatagggt
     2401 aaaaaaatat gtttggaagt aaaataaatc atacagagct tcaagatatc aagaatgaaa
     2461 accaaaatct tactcagcag cttgagaaaa tcaaggctga aaatttagag ttaaaagata
     2521 aaatttcact cttagagcaa gaagctttag agtcaaagtt aaaaaccgat cttttaaatg
     2581 tattattaag cggtgtttta aaaaatatta ccatagtcca aagtgatatg cttgaaaatg
     2641 ttaataaagc tgaaattatt tctaattatt ccaaaacttc actagctgaa atggatgaat
     2701 taaaccatat agccaattct ataaacgctt ctttgagtga tatcacagag tcagctaata
     2761 aaacacgcga tgttgcagga actttacatc gtagcgttga tgagattaca aatgtaatta
     2821 accttattaa agatgtatcc gatcaaacca atcttttagc attaaatgct gctatagagg
     2881 ctgctagagc aggagaacat ggtaggggtt ttgctgttgt tgcggatgaa gttagaaagt
     2941 tagctgaaaa aactcaaaaa gctacaacag aagtggaaat gaatatcaat cttctaaaac
     3001 aaaatgcaaa tgaaatgtat acccaaagtg agcaagtgga aaaaatttct attaattcta
     3061 acgcacacat tatgagtttt tcagaaaaat ttacccactt agtcaacgaa gcacactcta
     3121 caaattcgaa tgctgtaggt attgcctcag aagcatttgt atctttggca aaacttgatc
     3181 atatagcatt taaacttaat ggatataaag aaatttttgc aaaatctgga caagaattag
     3241 ccgatcatac aagttgtcgt ttaggtaaat gggtagcaag taccggaaaa gaaagatttg
     3301 gcgatagcaa aagctttata aaaatcaatg agccacatca aaaagtacat gaaaatatga
     3361 atagcgctat ccgcatcgca aacacagaag atgtaagctt aagcaatact caa
//
LOCUS       DARAII010000165         3405 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.167, whole genome shotgun sequence.
ACCESSION   DARAII010000165 DARAII010000000
VERSION     DARAII010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3405
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.167"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..286
                     /locus_tag="SB143_001924"
     CDS             <1..286
                     /locus_tag="SB143_001924"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750418.1"
                     /translation="YYPNIVSKYAIEYNYDLKIPQYDYQEFIIALNDLNINYCQSEFN
                     LERVEVDVEQIEQLPLDNFEGDLLILAQTLKTASKFDYARKSGFVIIDFF"
     gene            423..1319
                     /gene="bet"
                     /locus_tag="SB143_001925"
     CDS             423..1319
                     /gene="bet"
                     /locus_tag="SB143_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004292518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HEF9750419.1"
                     /translation="MDTKTTKNTKITNTQNQAVSTSFTQEKIELIKKHFFPNNATIVE
                     MEYCLNIANKYNLDPFLRQIFFVPRRAQVKINDKKEWVDKIEPLVGRDGFLAIAHKTG
                     KFGGIRSYSEIKQFPRLNNGKWEYIQDLVAVCEVYRTDSDKPFVVEVAYNEYVQKRET
                     GEATSFWTTKPDTMLKKVAESQALRKAFNLSGLYSAEEMGVGMTESDNIIIDVEAYQT
                     NTQENKKKVDFSQNFSQSTATTFSEDERQVLLSLGLEVKNENNYYWIVGNTYGLTDKL
                     KKLGYKYHPDKKTWWKQIENVA"
     gene            1456..2040
                     /locus_tag="SB143_001926"
     CDS             1456..2040
                     /locus_tag="SB143_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750420.1"
                     /translation="MNLQRKIKTIEKEKTKLLKSHKSLLEASNEIDLYNLVIEKEFSK
                     FYKAVNSKYPCRSREWDERMDFAQDYSDILKKIANVERLQSLINKKSKENEDGYKVGD
                     FLYSSWGYEQTNIDFYQVIATTEKTIFLAEVKADVKVTGWERGLKSPCKNALKLDKAA
                     FKTLSNSPKDSRGGGYAKSLYKYKGKALEFTSDY"
     gene            2054..2761
                     /locus_tag="SB143_001927"
     CDS             2054..2761
                     /locus_tag="SB143_001927"
                     /inference="COORDINATES: protein motif:HMM:NF015347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEF9750421.1"
                     /translation="MKKYKYTPKTKEELKALVKNESIHLGDIDTSKITDMSCLFFKST
                     REDFSGIETWNTSNVEDMSYMFYGCHAFNQDISGWNVSRVKNMEEMFYGCYNFNQNIS
                     SWDVYEVESMSWMFYDCYNFNQDISKWNVFNVAYMENTFWGCKNFNQPLGRWNVSNVK
                     NMAGMFWGCENFNQPLEKWNTSRVKNMSWMFKNAISFNQSLNGWNVSKVEYTDDMFEN
                     CPIDNSNKPKALQELSI"
     gene            2849..3058
                     /locus_tag="SB143_001928"
     CDS             2849..3058
                     /locus_tag="SB143_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750422.1"
                     /translation="MKKEKLEQEFWDFVAIITLFFVCTVIFAFTKLAPLAAVCWIMFL
                     FFASVYPVKWIIQFIFFLIKRKKGE"
     gene            3060..>3405
                     /locus_tag="SB143_001929"
     CDS             3060..>3405
                     /locus_tag="SB143_001929"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750423.1"
                     /translation="MEKNYEDFKEALLKGNLALVLTGVSKSGMTRTFKVFYKNKKEQY
                     LPIPDEIAKAVSERKVGEKGIVIRGCGMDMSLALWLNIASYLKCYDEAYRNYFSYRLN
                     SGNFNPFYPNMET"
BASE COUNT         1287 a          452 c          602 g         1064 t
ORIGIN      
        1 atactatcca aatatagttt caaaatatgc aattgaatac aattacgatt taaaaatacc
       61 acaatatgat tatcaagagt ttatcattgc gctcaatgat ttaaatatta attattgtca
      121 atcagaattt aatttagaaa gagttgaagt ggatgttgaa caaatagaac agttgcctct
      181 tgataatttt gaaggagatc ttttaatttt agcacaaaca ctaaaaactg ctagcaaatt
      241 tgattatgct agaaaaagcg gttttgtgat tatagatttc ttttgaacta attgtgtaac
      301 aacaataaaa gctttttagc ttaacacgcc ctataagttg ggaatagatt tttttattcc
      361 cttcttgggc aatataaatt tctattcctt ttttatttaa aaatacaaaa aaggaaataa
      421 caatggatac aaaaaccaca aagaatacaa aaatcacaaa cactcaaaat caagctgtta
      481 gcacttcatt cacacaagaa aaaattgaac tgattaaaaa acacttcttt cctaacaatg
      541 ctacaatcgt tgaaatggaa tattgtctaa atattgctaa caagtacaat ttagatccgt
      601 ttttaagaca gatatttttt gtgccgagaa gagcgcaggt taaaattaat gataaaaaag
      661 agtgggtgga taaaattgaa cctttagtgg gaagagatgg ttttttggct attgcccaca
      721 aaacgggtaa atttggtgga attcgctctt atagcgaaat taaacaattc ccacgattaa
      781 ataatggaaa atgggaatac attcaagatt tagttgccgt ttgtgaagtt tatcgaactg
      841 atagtgataa accttttgtc gtagaagttg cttataatga atatgtacaa aagagagaaa
      901 caggcgaagc tacttcattt tggactacaa aacctgatac catgctaaaa aaagtagccg
      961 agtcacaagc acttagaaaa gctttcaatc ttagtggatt atattctgct gaagaaatgg
     1021 gcgttggaat gactgaaagt gacaatatta ttattgatgt tgaagcttat caaaccaata
     1081 ctcaagaaaa caaaaagaaa gttgatttct cacaaaactt ttcacaatca actgctacga
     1141 cttttagcga agatgaaaga caagttttgt tatctttagg actcgaagtg aaaaatgaaa
     1201 acaattatta ttggattgta ggaaacactt atggattgac agacaaactc aaaaaattag
     1261 gctataaata tcaccctgac aaaaaaacat ggtggaaaca aattgaaaat gtagcttaat
     1321 tcggtaatct cgcgctagaa ttatctagtg ctaacttaat ttaaattgat tcctatggtg
     1381 ggaatagaca ttcccgcttt tagggaatat tctattcctt tttttaatta tcaaatcaaa
     1441 aaaaggaaaa atacaatgaa tttacaaaga aaaataaaaa caatagaaaa agaaaaaact
     1501 aaacttctta aatcacataa aagtttgctt gaagcttcta atgaaattga tctttacaat
     1561 ctcgtgatcg aaaaggaatt ttcaaaattt tacaaagctg taaatagtaa atatccttgc
     1621 agaagtagag agtgggatga aagaatggat tttgctcaag actacagtga tattttaaaa
     1681 aaaatcgcaa atgttgaaag acttcaatct cttatcaata aaaaaagtaa agagaacgag
     1741 gatggttata aagtagggga ttttctctat tcaagttggg gatacgaaca aacaaacatt
     1801 gatttttatc aagttatagc cacaaccgaa aaaaccattt ttcttgcaga agtaaaggca
     1861 gatgtgaaag taacaggttg ggaaagaggt ctaaaaagtc catgcaaaaa tgctttaaag
     1921 cttgacaagg cagcttttaa gacgctttca aattctccaa aagattcaag aggtggtggt
     1981 tatgctaaaa gtctttataa atataaaggc aaggctcttg aatttacaag tgattactaa
     2041 aaaggataat aaaatgaaaa aatacaaata cacgcctaaa accaaagaag agcttaaggc
     2101 tctagttaaa aatgaaagta ttcatctagg tgatattgat acaagcaaga tcactgatat
     2161 gagttgtttg ttctttaaat ctactcgtga agacttctca ggtattgaaa cttggaatac
     2221 ttcaaatgtt gaagatatgt cttatatgtt ctatggttgc catgctttca accaagatat
     2281 ttcaggttgg aatgtgagta gggtaaaaaa tatggaagaa atgttctatg gctgctataa
     2341 cttcaaccaa aacatttcaa gttgggatgt ttatgaagtt gaaagtatgt catggatgtt
     2401 ttatgattgc tataacttca accaagatat ctctaaatgg aatgttttta atgtagctta
     2461 tatggaaaac acgttttggg gttgcaagaa cttcaatcaa cctttaggca ggtggaatgt
     2521 cagcaatgtg aagaatatgg ctggaatgtt ttggggttgt gagaacttca atcaacccct
     2581 agagaagtgg aacacttcta gggttaagaa tatgtcatgg atgtttaaaa atgccatatc
     2641 cttcaaccaa tcattaaatg gttggaatgt gagtaaggtt gaatacactg atgatatgtt
     2701 tgaaaattgc cctatagaca actcaaacaa gcctaaagct ttacaagaat tatctattta
     2761 aacaaatcaa gccctaagtt gggatagttt tatcccacta gggatacttc tatccttttt
     2821 tgttaaataa gtaaaaaagg aaaaatacat gaaaaaagaa aaattagaac aagaattttg
     2881 ggattttgtg gctattataa cgctattttt tgtttgcaca gttatttttg cattcactaa
     2941 attagcacca ttggcagctg tttgttggat aatgttttta tttttcgcaa gcgtttatcc
     3001 tgttaaatgg ataattcaat ttattttctt tttaataaaa agaaaaaaag gagaatagaa
     3061 tggaaaaaaa ttacgaagat tttaaagaag cacttttaaa aggcaatctt gcacttgttt
     3121 taacaggtgt ttcaaaaagt ggaatgacac gcacttttaa ggtgttttat aaaaataaaa
     3181 aagaacaata tttgcctatt cctgatgaaa ttgctaaggc ggtttcagaa agaaaagtag
     3241 gtgaaaaagg tattgttatt agaggttgtg gaatggatat gagtcttgct ttatggctta
     3301 atattgcaag ctatttaaag tgttatgatg aagcttatcg caattatttt tcttataggc
     3361 ttaatagtgg taactttaat ccattttatc caaacatgga aactt
//
LOCUS       DARAII010000166         3392 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.168, whole genome shotgun sequence.
ACCESSION   DARAII010000166 DARAII010000000
VERSION     DARAII010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3392
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.168"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..441
                     /gene="mobB"
                     /locus_tag="SB143_001930"
     CDS             <1..441
                     /gene="mobB"
                     /locus_tag="SB143_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEF9750424.1"
                     /translation="LITKIANEFIKQNLKVLIIKHDPADKAQFDVNGKDSFKFFQSGA
                     EVMVLSPTRTTFFSHEKRDILSALKIAPDFDLCLVEGLKTLDLPRISVFYKEIDESYF
                     AFSNAIASYEKIDSYPNLTWLDLNDVQRICNYILKNAKNLQGEL"
     gene            443..1285
                     /locus_tag="SB143_001931"
     CDS             443..1285
                     /locus_tag="SB143_001931"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEF9750425.1"
                     /translation="MQELISYIQKAVIEISNALKFPDTSYSQNQNSTGDTQLKFDVLS
                     DEIITNTLSQCPSIKAIISEEKDEILNINENAKFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLKAALYSMYGARLELVICEDKPKLYRLDKNNKFVFVKDLQMQEKGKIN
                     ATGGTQKFWEEKHAKFIKKLFDEGYRLRYSGAMVSDINQILLKGGGLFSYPATSDAPK
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNHSLLELDFDEIHATTPCFFGSKYEISELLK
                     AYNE"
     gene            1278..1475
                     /locus_tag="SB143_001932"
     CDS             1278..1475
                     /locus_tag="SB143_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750426.1"
                     /translation="MSEIRDEFEQDLDKKKEILSSCQSSKGLKSCYNCDEIFNCSTRK
                     DYVDAVYNSMSKGKTEGGFDF"
     gene            1485..3371
                     /gene="metG"
                     /locus_tag="SB143_001933"
     CDS             1485..3371
                     /gene="metG"
                     /locus_tag="SB143_001933"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEF9750427.1"
                     /translation="MRYLTTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRLLT
                     GTDEHGQKIEQAAKIRNSTPKEYADKISSEFKKLWDEFEITYDIYARTTDTRHVEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFAKSQLINECGCPDCGKDTSLLKEESYFFK
                     LSKYQDKILQWYDKEDPILPKNKKNELINFVQSGLKDLSITRTSFDWGIEIPEEIKDD
                     KHIIYVWLDALFIYISSLDYQSQGENAKFWPAHIHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGLEAFRYFLLREVPFGNDGDFS
                     ESVLINRINTELGNEFGNLLNRIIGMSIKYNQGNISQEGVLEFYKNELDTAKEHLDNA
                     INFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKANKIKEANALIGLCANILAKT
                     SLLLSPTLPKSCQKVGLALNFEISPTNYQKLILQNELLDFKASACEALFPKIEKPLLS
                     QEEKQEVKKEEKPKIKIDDFAKIEIKVAKVIDCQNIEGSEKLLKFKLELDNKEIRQVL
                     SGIAKYYKASDLIGKQVCVISNLKKAKIFGHESDGMILSAKSGDKLVLISPEQLVENG
                     SLVG"
BASE COUNT         1247 a          480 c          611 g         1054 t
ORIGIN      
        1 ctgatcacaa aaattgcaaa tgaatttata aaacaaaacc taaaagtttt gattatcaaa
       61 cacgatcctg cagataaagc tcaatttgat gtcaatggca aggatagttt taagtttttt
      121 caaagtggtg ctgaagtgat ggttttaagt cctactcgca cgactttttt ctctcatgaa
      181 aaaagagata ttttaagcgc gttaaaaata gcgcctgatt ttgatttatg tttggttgaa
      241 ggattgaaaa ccttagattt accacgcata agtgtttttt ataaagaaat tgatgaaagt
      301 tattttgctt tttctaatgc tattgcaagc tatgaaaaaa ttgattctta tccgaattta
      361 acttggcttg atttaaatga cgtgcaaaga atttgcaatt atattttaaa aaatgcgaaa
      421 aatttacaag gagaattata aaatgcaaga acttatttcc tacatacaaa aagcagtaat
      481 tgaaatttca aatgctttaa aatttcccga tacaagctat agtcaaaacc aaaactccac
      541 aggcgatact caacttaaat ttgatgtttt aagtgatgag attatcacaa atactttaag
      601 tcagtgccct agcattaaag ctattatcag cgaagaaaaa gatgagattt taaatatcaa
      661 tgaaaatgcg aaatttatcg tcgcttacga tccgcttgat ggctcaagtt taatggatgt
      721 taattttgct ataggttcta tttttgctat ttatgaagaa aaagcaagtg ctaaaaattt
      781 aaaagctgcg ctttatagca tgtatggagc tcgcttggaa cttgttattt gcgaagataa
      841 gccaaaactc taccgtcttg ataaaaacaa caaatttgtt tttgtaaaag accttcaaat
      901 gcaagaaaaa ggtaaaatca atgctacagg cggtactcaa aaattttggg aagaaaagca
      961 tgctaagttt atcaaaaaat tattcgatga gggttatcgc ctaagatatt caggagctat
     1021 ggtaagtgat atcaatcaaa ttttgctcaa aggtggtgga ctttttagct atccagcaac
     1081 tagtgatgcg cctaagggta aattgcgcgc tttttttgaa gtatttcctt tagcttttat
     1141 tatagaaaaa gcaggaggta aaaccacaaa tggaaaaaat cattccttgt tagaacttga
     1201 ttttgatgaa attcacgcaa ccacaccttg cttttttggc tcaaaatatg aaatttcaga
     1261 gcttttaaag gcttataatg agtgaaataa gagatgagtt tgagcaagac ttagataaaa
     1321 aaaaagaaat tttaagctct tgccaaagct caaaaggctt aaagtcttgc tataattgcg
     1381 atgaaatttt taattgctct acaagaaaag attatgtaga tgcagtttac aatagtatgt
     1441 ctaagggtaa aaccgaaggc ggatttgatt tttaaaggaa taaaatgcgt tatcttacaa
     1501 ctccaattta ttatgtaaat gatgtgcctc acttaggaca tgcttatacc actatcattg
     1561 cggacacttt agctagattt tatcgtttgc aagggcatga gactagattg ttaacaggta
     1621 ctgatgaaca cggacaaaaa atagaacaag cagcaaaaat aagaaactca accccaaaag
     1681 aatacgctga taaaatcagt tctgaattta aaaaactttg ggatgagttt gaaatcactt
     1741 atgatatata tgcaagaaca accgatacta ggcatgttga atttgttaaa gctatgtttt
     1801 taaaaatgtg gcaaaaagga gatatttata aggatgaata tgagggacat tattgtattt
     1861 catgtgaaag tttttttgca aaaagtcaac ttataaacga atgtggatgt cctgattgtg
     1921 gcaaagatac ttctttatta aaagaagaaa gttatttttt taagctttca aaatatcaag
     1981 ataagattct tcaatggtat gataaagaag atcctatctt gcctaaaaat aaaaaaaatg
     2041 aattgattaa ttttgtccaa agtggactta aagatctttc tattactcga acaagctttg
     2101 attggggtat tgaaatccca gaagaaatta aagacgataa acacattatt tatgtatggc
     2161 ttgatgcgct ttttatttat ataagctcgc ttgattatca aagccaagga gaaaatgcta
     2221 aattttggcc agcccacata cacttagtag gcaaagacat cttgcgtttt catgcgattt
     2281 attggccagc ctttttaatg agcgtggatt tacctttgcc taaatttatc ggcgcgcacg
     2341 gttggtggac taaagagggt gaaaaaatga gcaagtctaa aggtaatgtc gtaaaaccta
     2401 aagaagtggt agatgcttat ggcttagagg cttttagata ctttctgcta agagaagttc
     2461 cttttgggaa tgatggtgat tttagcgaaa gtgttttgat taatagaatc aatacagaac
     2521 taggcaatga atttggcaat ttactcaacc gcatcatagg aatgagtata aaatataatc
     2581 aaggtaatat ttctcaagaa ggcgttttag aattttataa aaacgaactt gatacggcta
     2641 aagagcactt agataacgct ataaactttt tagaaaacct acaatgtaat cgctatctag
     2701 aagagctttt taaagcctta agtgttgcaa atttagccat tagcaaatac gaaccttgga
     2761 atttaatcaa agcaaataaa atcaaagaag ccaatgctct tataggactt tgtgcaaata
     2821 tcttagctaa aacaagtctt ttattaagcc ctactttgcc aaaatcttgt caaaaagtag
     2881 gtttggcttt aaattttgaa atttctccta caaactatca aaaacttatc ttacaaaatg
     2941 aacttttaga ttttaaggct agcgcctgtg aagctttatt tccaaaaata gaaaaacctc
     3001 tcttatctca agaagaaaaa caagaagtca aaaaagaaga aaagcctaaa atcaaaatcg
     3061 atgattttgc aaaaatagag attaaggtag ccaaggtgat tgattgtcaa aatatagaag
     3121 gcagtgaaaa acttttaaaa tttaaactcg aacttgacaa taaagaaatt cgtcaagtgc
     3181 tttcaggtat tgctaagtat tataaagcaa gcgatttgat aggaaagcaa gtttgtgtta
     3241 taagcaatct taaaaaagct aagatttttg gacatgaaag cgatggtatg atactttctg
     3301 caaaaagcgg ggataaactt gtgctcataa gccctgaaca acttgtagaa aacggctctt
     3361 tagtaggcta ggatgaatat tagcaatcta ag
//
LOCUS       DARAII010000167         3380 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.169, whole genome shotgun sequence.
ACCESSION   DARAII010000167 DARAII010000000
VERSION     DARAII010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.169"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1022
                     /locus_tag="SB143_001934"
     CDS             <1..1022
                     /locus_tag="SB143_001934"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEF9750428.1"
                     /translation="GKDMDMLLSSGERVTSALLSIALNERGYPSLAFSGRKAGIITDS
                     VSTKARISYIDTQAITKALNEGKIVVVAGFQGVDKEGDVTTLGRGGSDLSAVAVAGAL
                     KADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELAKKL
                     NVKLVTRSSFNDNEGTMITKEDGMEQALVSGIALDRNQARVTLRNIEDKPGIAAEIFS
                     VLADENINVDMIIQNVGVDGATNLGFTVPQNELDLAKNAMQKILGSKTTIESDSAVVK
                     VSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRALHEC
                     YGLDK"
     gene            1023..1556
                     /locus_tag="SB143_001935"
     CDS             1023..1556
                     /locus_tag="SB143_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004292099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEF9750429.1"
                     /translation="MSDFLSFTLENIRNGGTFMAWMESRRLEWAPLMAARLRYLLEGR
                     TFVLMCDEQRAWYEEYFLANINSKTTRPMLPFVSLKSLCKKKIQNIEDIALLNDLLDI
                     SFPNGFIYFYIGSASDKKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDVKLITLY
                     KLFDTSLDAILFSKVSL"
     gene            1556..2167
                     /locus_tag="SB143_001936"
     CDS             1556..2167
                     /locus_tag="SB143_001936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEF9750430.1"
                     /translation="MFVSKIIITDDFDGIRAELLKQFHPNSLRFIPKEVASEFLIDDA
                     KAVEKESYIAETSEKIIVLMANSFRIEAQNFLLKLLEEPPKNIKFLIVVPSKNLLLPT
                     IKSRLICEKRNKIKAKNTLNLELNKMDLKTLFEFLQENENLDKAELMEKIALIAEESV
                     KFKDFNADELEFFYESYELAKLNSKSSLILATLLLNYYTKNEK"
     gene            2164..3333
                     /gene="folP"
                     /locus_tag="SB143_001937"
     CDS             2164..3333
                     /gene="folP"
                     /locus_tag="SB143_001937"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEF9750431.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTQIHFILIKDIT
                     TPAANILKQDALRVGAELITHKEVITAKITHSNTLLMATKEQIQKLINKEKLQDFGLK
                     NLARFLENGFSKPKQAELMAVINVNEDSFNADSRVSYKDFEERLNEILALNPEYIDIG
                     AVSSRPKSVYCGKEEEFRYCGKEEEFRRLKNVLDLIYDKNYYEKAIFSLDSFDEYCLE
                     YALNKGFKFINDISSLRNLNLAKLASKYNAKYCLMHMQNDPLTMQDDPRYDDLLDEMS
                     SFFKEKLEILDTLGVKESILDVGIGFGKSAEHNMILIKHLEHFLQFKKPLLIGASRKS
                     VINAYYESEVKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFAMANAMQSIGV"
BASE COUNT         1198 a          426 c          675 g         1081 t
ORIGIN      
        1 atggcaaaga tatggatatg cttttaagta gtggtgagcg cgtaacgagt gctttattgt
       61 ctattgcact aaatgaaagg ggatatcctt ctcttgcttt ttcaggaaga aaggcaggaa
      121 ttattacaga tagcgtttct acaaaggcta gaatttctta tatcgacact caagcaatca
      181 ccaaggcttt aaatgaagga aagatagttg ttgtagcagg ctttcaagga gttgataaag
      241 agggcgatgt tacaacttta gggcgtggcg gaagtgattt gagtgcggtt gctgttgcgg
      301 gagctcttaa ggcggattta tgtgaaattt ataccgatgt ggatggagtt tatactacag
      361 atccaaggat tgaaccaaag gcaaaaaaac ttgataaaat ttcttatgaa gaaatgcttg
      421 aacttgctag tttgggggct aaggttttac aaaatcgctc ggttgaactt gcaaaaaaat
      481 taaatgtaaa attagttact agaagtagtt ttaatgataa tgagggtaca atgataacaa
      541 aagaagatgg aatggaacaa gctttagtta gcggtattgc tttagataga aatcaagcaa
      601 gagtaacttt aagaaatata gaagataaac cagggattgc agctgaaatt ttttctgttt
      661 tagcggatga aaatatcaat gtagatatga tcatacaaaa tgttggggta gatggagcta
      721 caaatttagg atttaccgtg cctcaaaacg agcttgattt ggcaaaaaat gctatgcaga
      781 aaattttagg ttctaagaca actatagaaa gtgatagtgc tgtggttaag gtttctatag
      841 tgggcgtggg tatgaaatca cattcgggtg tagcaagtaa agcctttaaa gctttggcgg
      901 atgagggtat taatataggt atgatttcta caagcgagat taaaatttca atgattgtac
      961 atgaaaaata tggcgagctt gcggtaagag ccttgcatga gtgctatgga cttgataaat
     1021 aaatgagcga ttttttaagt tttacacttg aaaatatccg caatggcgga acatttatgg
     1081 cttggatgga gtcccgtcgt ttagaatggg ctcctttaat ggccgcaaga ttaagatacc
     1141 ttttagaggg gcgaaccttt gttttaatgt gtgatgaaca aagggcttgg tatgaagaat
     1201 actttttagc aaatataaat tccaaaacta ctcgccccat gcttcctttt gtgtctttaa
     1261 aatctttatg taaaaaaaag atacaaaata tcgaagatat agccttgctt aatgatttac
     1321 ttgatatttc gtttcctaat ggctttattt atttttatat aggaagtgca agcgataaga
     1381 aatcattaat cgctaaatca cgcgacgata gtcttttatg gctttttgat gagcaattgc
     1441 aagatagttt ttatttgaat tccaaagata aagatttgga tgtcaagctt atcactcttt
     1501 ataaactttt tgatacgagt ttggatgcga ttttattttc caaagtgagt ctttagtgtt
     1561 tgtaagtaaa attatcatca ctgatgattt tgacggtatt agagctgaac ttttaaaaca
     1621 atttcatcct aattctttgc gttttatacc taaagaagtt gcaagtgagt ttttaatcga
     1681 tgatgctaag gcagttgaaa aggaaagtta tatcgcagaa acaagtgaaa aaatcattgt
     1741 tttaatggcg aattctttta ggatagaagc tcaaaatttt ttactcaagc ttcttgaaga
     1801 gccaccaaaa aatatcaaat ttctcatcgt agttccttct aaaaatttac ttttgcccac
     1861 tataaaatcg cgtcttattt gtgaaaaacg caacaaaata aaggctaaaa atactttaaa
     1921 tttagaactt aataaaatgg atttaaagac tttgtttgag tttttacaag aaaatgaaaa
     1981 tttagataaa gcagaattaa tggaaaaaat cgcactgatt gcagaagaaa gtgttaaatt
     2041 taaagatttt aatgccgatg agcttgaatt tttttatgaa agctatgagc ttgcaaaatt
     2101 aaattccaaa agctctttga tactagctac gcttttatta aattattata caaagaatga
     2161 aaaatgaaat tttttaaaat caatccaaac actgatttta acttactttg ctcttttata
     2221 aatcctcata aaatggggca aaaaattatg agtgaaaaaa ctcaaattca ttttattttg
     2281 attaaagata taactactcc tgcggcaaat attttaaaac aagatgcctt aagagtggga
     2341 gctgagctta taacacacaa ggaagttatt acagctaaaa ttacacattc taatacactt
     2401 ttaatggcca caaaagaaca aattcaaaaa cttataaaca aagaaaaact tcaagatttt
     2461 gggcttaaaa atttagctag gtttttagaa aatggttttt caaaaccaaa gcaagcagag
     2521 cttatggcgg ttataaatgt caatgaagat agttttaatg ctgattctag ggtgagttat
     2581 aaagattttg aagaaagatt aaatgaaatt ttggccttaa atcccgagta tattgatata
     2641 ggagcggtaa gctctaggcc aaaaagcgtg tattgtggta aggaagaaga gtttagatat
     2701 tgtggtaagg aagaagagtt tagaagactt aaaaatgtgc tggatttaat ttatgataaa
     2761 aattattatg aaaaagccat ttttagtttg gatagttttg atgaatattg cttagaatac
     2821 gctttaaaca agggctttaa atttatcaat gatatcagta gcttaagaaa tctgaattta
     2881 gctaaacttg caagcaaata caatgcaaaa tactgcctta tgcatatgca aaatgatcct
     2941 ttaaccatgc aagatgatcc aagatatgat gatttgcttg atgaaatgag tagttttttt
     3001 aaagaaaaac ttgaaatttt agatacttta ggagtgaaag aaagcatttt agatgtggga
     3061 attggctttg gcaaaagtgc agaacacaat atgattttaa tcaagcattt agaacatttt
     3121 ttgcaattta aaaagccctt gcttatagga gcaagtcgca aaagtgtgat caatgcgtat
     3181 tatgaaagtg aagttaaaga tcgcttagcg gggactttgt atttgcattt aaaggctttt
     3241 gaaaatggcg cgagcattat aagggtgcat gatttatacg aacataaaca gctttttgca
     3301 atggcaaatg cgatgcaaag cataggagtt taaatgacaa aaaaagagta tttagaaaaa
     3361 gttgccttgg ctgcttcttg
//
LOCUS       DARAII010000168         3261 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.170, whole genome shotgun sequence.
ACCESSION   DARAII010000168 DARAII010000000
VERSION     DARAII010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3261
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.170"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1168)
                     /locus_tag="SB143_001938"
     rRNA            complement(<1..1168)
                     /locus_tag="SB143_001938"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(1777..1853)
                     /locus_tag="SB143_001939"
     tRNA            complement(1777..1853)
                     /locus_tag="SB143_001939"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1817..1819),aa:Ile,seq:gat)
     gene            complement(1861..1936)
                     /locus_tag="SB143_001940"
     tRNA            complement(1861..1936)
                     /locus_tag="SB143_001940"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1901..1903),aa:Ala,seq:tgc)
     gene            complement(2037..>3261)
                     /locus_tag="SB143_001941"
     rRNA            complement(2037..>3261)
                     /locus_tag="SB143_001941"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT          826 a          808 c          621 g         1006 t
ORIGIN      
        1 tactttagcc ccgttatatt ttccgcgcaa aatcactaga ccagtgagct attacgcttt
       61 ctttaaagga tggctgcttc taagccaacc tcctggttgt ttaagtaact tcacatcgtt
      121 ttccacttaa gtaagattta gggaccttag ctggtagtct gggttgtttc cctcttgacg
      181 acggatttta tcactcgccg cctgactgct gtgattacat ataaggtatt cggagtttga
      241 tagggtttgg tacattggtg tatgccctag cccattcagt gctctacccc cttatattac
      301 gacacaacgc tatacctaaa tatatttcgg agagaaccag ctatcacgaa gtttgattgg
      361 cctttcaccc ctatccacaa gtcatcccgg ggcttttcaa cgcctatggg ttcagtcctc
      421 cactagttct tacactagct tcaacttgct catggataga tcacttcgtt tcgggtctgc
      481 agcatctgac taagcgccct attcagactc gctttcgcta cggcttcgcg tttgcttaac
      541 cttgccagac accacaactc gcaggctcat tatgcaaaag gcagtccatc accctgtatt
      601 gctacatagg gctctgaatg attgtaagca aatggtttca ggttctattt cactctgatc
      661 acctcagttc ttttcacctt tccctcacgg tacttgtgca ctatcgatct ggtattagta
      721 tttagggttg gatcgtggtc gacccagctt cagacaggat ttctcgtgtc ccgccctact
      781 caggatactg ctagctaagg tttgtttttc gcatacggga ctatcaccct ctatggctat
      841 actttccaga atgttctgct aaactcacct cttgcacatt gcagtcctac aacccccagt
      901 gcaagcactg ggtttgccct cttgcgcttt cgctcgccgc tactgacgca atctctattg
      961 atttcttttc ctgagggtac taagatgttt caattcccct cgttcgctcc tatataggta
     1021 atgtatatct ctatacattg ggttgcccca ttcggaaatc tacggatcaa agcttcttga
     1081 cagctccccg tagcttatcg cagtctagta cgtccttcat cgcctttacc agtcaaggca
     1141 tccaccattc gctcttagta gcttaccttt tttaccttct ttagcgtcaa ggcaaagcct
     1201 tgactaagaa gcaagctaaa gacctacccc gccaacctaa aagatattag gctgataaag
     1261 taagttaaag actaatagtc tttcttgctt cttctgctaa gaatatgcat aaaagttaga
     1321 tataatctaa cttctacctt ttattattga ttctaaaacg catcacttcc ttgttaaagt
     1381 ttttatgata agacttcatt atcttaagac ggaaagcatt caaacactta atataaatac
     1441 taaaaatatc taaactaagt cgtgagtttg aaacttatct ttaatttaaa attttagatc
     1501 taatattctc tttattataa aaaataaaga tagttaaaag atataaataa aaccaaagaa
     1561 aagataattg agttttatcc tttaacaagt cctgtaaaat tgtttttatt aaaacttgct
     1621 tgtgactctt aacaatgata attataaaga acatttaggt ttaaaaccta aaggaagtat
     1681 atggtatata aagtatattt ataaatatat acttgcttta gattttaaag cttgatttca
     1741 aatcttgttt ttatcttttt aagattgata cttctatggt gggcctaaca agacttgaac
     1801 ttgtgacctc acccttatca ggggtgcact ctaaccagct gagctatagg cccttaataa
     1861 tggtggagaa tagcgggatc gaaccgctga cctcctgcgt gcaaagcagg cgctctccca
     1921 gctgagctaa ttccccataa acaattagct ttatcatcaa tctttgaaat ctaaacaaga
     1981 atcaattgag tttataatga agtaatagtt gtgagactta ttactttgta ctctagaaag
     2041 gaggtgatcc aaccgcaggt tctcctacgg ttaccttgtt acgacttcac cccagtcgct
     2101 gattccactg tggacggtaa ctagtttagt attccggctt cgagtgaaat caactcccat
     2161 ggtgtgacgg gcggtgagta caagacccgg gaacgtattc accgtagcat ggctgatcta
     2221 cgattactag cgattccggc ttcatgctct cgagttgcag agaacaatcc gaactgggac
     2281 atattttata gatttgctcc acctcgcggt attgcgtctc attgtatatg ccattgtagc
     2341 acgtgtgtcg ccctgggcat aagggccatg atgacttgac gtcgtccaca ccttcctcct
     2401 ccttacgaag gcagtctatt tagagtgctc ggccgaaccg ttagcaacta aatacgtggg
     2461 ttgcgctcgt tgcgggactt aacccaacat ctcacgacac gagctgacga cagccgtgca
     2521 gcacctgtct ctaagttcta gcaagctagc accctcttat ctctaaaagg ttcttaggat
     2581 atcaagccca ggtaaggttc ttcgcgtatc ttcgaattaa accacatgct ccaccgcttg
     2641 tgcgggtccc cgtctattcc tttgagtttt aatcttgcga ccgtactccc caggcggtac
     2701 acttaatgcg ttagctgcat tactgagatg actagcaccc caacaactag tgtacatcgt
     2761 ttagggcgtg gactaccagg gtatctaatc ctgtttgctc cccacgcttt cgcgccttag
     2821 cgtcagttga gttccagcag atcgccttcg caatgggtat tcttggtgat atctacggat
     2881 tttaccccta caccaccaat tccatctgcc tctccctcac tctagactat cagtttccca
     2941 agcagtttaa tggttaagcc attagatttc acaagagact tgataatccg cctacgcgcc
     3001 ctttacgccc agtgattccg agtaacgctt gcaccctccg tattaccgcg gctgctggca
     3061 cggagttagc cggtgcttat tccttaggta ccgtcagaat tcttccctaa gaaaaggagt
     3121 ttacgctccg aaaagtgtca tcctccacgc ggcgttgctg cgtcagggtt tcccccattg
     3181 cgcaatattc cctactgctg cctcccgtag gagtctggac cgtgtctcag ttccagtgtg
     3241 actgatcatc ctctcagacc a
//
LOCUS       DARAII010000169         3226 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.171, whole genome shotgun sequence.
ACCESSION   DARAII010000169 DARAII010000000
VERSION     DARAII010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3226)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3226)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.171"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..741
                     /locus_tag="SB143_001942"
     CDS             <1..741
                     /locus_tag="SB143_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAAAP family serine/threonine permease"
                     /protein_id="HEF9750432.1"
                     /translation="FLFSLYLIPQWSFESFSAIPGTKEFITIVWLTLPVLVFSFNHSP
                     AISTFSLSVKREYPENSVQKANQILFRTSVMLLAFVMFFVVSCVLSLTPAELAEARAQ
                     NIPVLSYFANKLDNPFISYGGPLIAFLAISSSFFGHYFGAREGAYGIVRKCCKLAGNE
                     NPDLKKIAVYSTLVMYIVMLITAYINPSILGFIESLGGPIIAAILFLMPIIAIYTVSK
                     MKKFQNKALDAFVFITGVLTIITVIYTF"
     gene            752..2116
                     /locus_tag="SB143_001943"
     CDS             752..2116
                     /locus_tag="SB143_001943"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEF9750433.1"
                     /translation="MSNLNIFKIGVGPSSSHTLGPMLAGNLFCKKIAKKLEKIERIQI
                     ILYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGKKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAQLEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTTDPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLVAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVGGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSIPIVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2176..2697)
                     /locus_tag="SB143_001944"
     CDS             complement(2176..2697)
                     /locus_tag="SB143_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750434.1"
                     /translation="MAFMSFSGFFYARNDLRLFKIEKKSEIKSFFYKDYTLASFKDEL
                     NLNNEIFFYQSLKENLFKENDEILISNLGKKIILFRNFTQNSDNFAEAKLKQVLLLIF
                     LFLASVFFASLAAINEFGAVDLVFLMICLLLLVMGIINLGLLFKQIRILKSFSKEEMK
                     EFLTQRMKKYAKK"
     gene            complement(2678..>3226)
                     /locus_tag="SB143_001945"
     CDS             complement(2678..>3226)
                     /locus_tag="SB143_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin biosynthesis protein RibD"
                     /protein_id="HEF9750435.1"
                     /translation="EIEFGVLEDEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIV
                     SNELSRTYAHKIRSVIDLLVLGGETIRKDRPILDARLCKSKAPNLCILSHQNLENFDK
                     SIPLFSVPHRQIYTQIPNKAKFLMYEGGENFLKKFKDEMDMFLIFQSSSLNDEKNVTM
                     PLNFKPLYRNFLGSDTYGIYEL"
BASE COUNT         1089 a          470 c          539 g         1128 t
ORIGIN      
        1 tttttatttt ctttatatct tatcccacaa tggtcatttg aaagttttag tgctattcct
       61 ggaacaaaag aatttattac tatagtatgg ctaactttac cggttttagt gttttcattt
      121 aatcactcac cagcaatttc aactttttct ctaagcgtaa aaagagaata tcctgaaaat
      181 tcagtacaaa aagcaaatca aattttgttt agaacctctg tcatgttgct tgcttttgtt
      241 atgttttttg tggtatcttg cgtgctttct ttaactccag ctgaacttgc tgaagcaaga
      301 gcacaaaaca taccggtgct ttcttatttt gctaataagc ttgataatcc atttatttct
      361 tatggtggtc cattaatcgc atttttggca atttctagtt cattctttgg acattatttt
      421 ggcgctagag aaggtgctta tggtatagtt agaaaatgct gcaaattagc aggtaatgaa
      481 aatcctgatt tgaaaaaaat cgcagtttat tctactttag taatgtatat tgttatgtta
      541 attactgctt atatcaatcc tagtatttta ggttttattg aaagtttggg cggtccaatt
      601 atcgcagcaa tcttattttt aatgccaatt attgcaattt atacggtttc aaaaatgaaa
      661 aaattccaaa ataaagcttt agatgctttt gtttttatta caggtgtttt aacaatcatc
      721 actgtaattt atacttttta aggtgtggtg aatgagtaat ttaaatattt ttaaaatagg
      781 tgtaggtcct tcatcatcac atactttagg acctatgctt gcaggaaatt tattttgtaa
      841 aaaaattgct aaaaaattag aaaaaattga aagaattcaa atcattcttt atggctcttt
      901 gtctttaaca ggcaaaggac acttgagtga taaggctgtg atttgggggt taaatggctt
      961 agaagctaaa aatttaagtg cggcaataca agatgaagta aataaaaatg ctattgaaaa
     1021 tgctcaaatt gatttttgtg gcaagaaaaa acttagtttt aattatgaaa aagatttgat
     1081 attttctaaa gattttttac ctttacatga gaatggtatg aagattaaag cttatgattg
     1141 taaaggtggg ttagtcgatg aagaaactta ttattctgta ggtggaggct ttgttttaac
     1201 agctgcacaa ttagaaaaaa aaggtaaaaa ttccaaccaa aataaaaaga aaaaactaga
     1261 tatagagctt aataacgcta aagaagcttt agagctttgc gataaaagag attgggattt
     1321 ggcagagctt tcttatcgtt atgaattgca atttcacact aaagaggaaa ttcgtgctta
     1381 ttgtcttgaa atttgggaag tgatgcaaga agtgtattat aatggtacgc acccgaatga
     1441 agattatttg cctggaaaac ttcatttaaa gcgtagagct aaaggactta aagaaagagt
     1501 agcgatgact actgatccta tggggattat tgattttatt tctttgtatg ctattgcgat
     1561 tgctgaagaa aatgctagcg gagcaaaagt cgtaaccgca ccaacaaatg gagcatgtgc
     1621 tgttatccct gctgtcatgc tttatcttaa aaaccatacc ataggtttta gtgatgaaaa
     1681 ggcaattgaa tttttattag tagctatgct tataggttct ttttataaga aaaatgcaag
     1741 tattagtgga gcagaagcag gttgtcaagc agaaattggt agtgctagct ctatggcagc
     1801 tgcggctatg gccacagttt taggagccaa tgcttttaag gcttgcaacg ctgctgaaat
     1861 ggcaatggaa catcatctag gacttacttg tgatcctgta gggggcttgg ttcaaattcc
     1921 atgcattgaa agaaatgctt ttggggcgat aaaagctatc agtgcagcta gaatggcaat
     1981 gacacgcaaa tctattccta tagtcagcct tgatgaggtg atagaaacca tgtatgaaac
     2041 tggtaaggat atgaattaca aatacaaaga aacttcttta ggcggacttg ctacaaattt
     2101 aaaaacagtg tgctaagatt ttactttgca cacttttaaa taaataaatt tttataaaat
     2161 ttaaggtatt tttgtttatt tttttgcgta ttttttcatt ctttgggtta aaaattcttt
     2221 catttcttct ttgctaaaac tttttaaaat gcgaatttgt ttaaaaagta agccaaggtt
     2281 gatgataccc ataaccaaaa gcaacaaaca aatcatcaaa aaaacaagat caacagcacc
     2341 aaattcattg atggcagcca agcttgcaaa aaatacactc gctaaaaata aaaaaattaa
     2401 aagcaagact tgttttaatt ttgcttcagc aaaattatca ctattttgag taaaatttct
     2461 aaaaagtatg atttttttgc ctaaatttga aattaaaatt tcatcatttt ctttaaacaa
     2521 attttctttc aaactttgat aaaaaaagat ttcattgttt aaatttagct catctttgaa
     2581 gcttgctagc gtataatctt tataaaaaaa agatttgatt tcgcttttct tttctatttt
     2641 aaataatctt aaatcatttc ttgcataaaa aaatccgcta aagctcataa atgccataag
     2701 tgtcactccc taaaaaattt ctataaagtg gcttgaaatt caaaggcatt gtaacatttt
     2761 tttcatcatt taaacttgaa ctttgaaaaa tcaaaaacat atccatctca tctttgaatt
     2821 tttttaggaa attttctcca ccctcataca ttaaaaattt agctttatta ggaatttgag
     2881 tataaatttg acgatgaggc acgctaaata aaggaatgct tttgtcaaaa ttttctaaat
     2941 tttgatgact taaaatacaa agattaggcg ccttgctttt acaaagtctt gcatcaagta
     3001 tgggacgatc ttttcttatc gtttctcctc ctaacacaag caaatcaatc acagaacgaa
     3061 ttttatgcgc ataagtacga cttagctcat tgcttacgat tttgccaaaa ggcgagccat
     3121 tcatagaaag agcgagtttg aaaagtttaa attgtccttt ttgccatttt aaaaaaggtt
     3181 ttaaaagttt ttttccctca tcttcaagca caccaaattc aatctc
//
LOCUS       DARAII010000170         3172 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.172, whole genome shotgun sequence.
ACCESSION   DARAII010000170 DARAII010000000
VERSION     DARAII010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3172
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.172"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..523
                     /gene="cas1"
                     /locus_tag="SB143_001946"
     CDS             <1..523
                     /gene="cas1"
                     /locus_tag="SB143_001946"
                     /inference="COORDINATES: protein motif:HMM:NF013984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEF9750436.1"
                     /translation="ERIAEHVATVDEENVDYCESLAAKEYFAYYHEGFNRRSENPINS
                     RLNYGYAVVRSAIARKLVATGFHPTFGIHHDNQLNAFNLADDLIEPYRAIVDLVAHNN
                     IASNIQLTKSERRELAHVLHNACIVDGVKVNVMSAIDIMVESLKRIILDASTEKLKVP
                     MILPIESMEGITE"
     gene            520..825
                     /gene="cas2"
                     /locus_tag="SB143_001947"
     CDS             520..825
                     /gene="cas2"
                     /locus_tag="SB143_001947"
                     /inference="COORDINATES: protein motif:HMM:TIGR01573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEF9750437.1"
                     /translation="MRLLVILSPTDRWGTKTEYTRLRKFLHKDGYLRIAPEAYMRIVQ
                     NRKASEKHYRRIEEYAPKTGTVRLLRLTEKQYNNIYLVTGEADYQEKVVGINSHIML"
     gene            1010..1834
                     /gene="apmA"
                     /locus_tag="SB143_001948"
     CDS             1010..1834
                     /gene="apmA"
                     /locus_tag="SB143_001948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015059965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminocyclitol acetyltransferase ApmA"
                     /protein_id="HEF9750438.1"
                     /translation="MKTRLEQVLERYLNGREVVVWGVPTRRLLRALKPFKFRVDDRVD
                     PQYHYVVAVNDDDLSDFLSDEQSKSFQYANDYLTFDDEGGELPFERMCFNVPVGRQTY
                     FGDGVVGACKNGYIKSIGQFTSINGTAEIHVNHQLNMTFVSDDIQNFFNEESMAIFHE
                     KLRKDPKHPYAYSKEPMTIGSDVYIGAHAFINASTVTSIGDGAIIGSGAVVLENVPPF
                     AVVVGVPARIKRYRFSKEMIETLLRVKWWDWSIEEINENADALISPELFMKKYGGL"
     gene            2080..2874
                     /locus_tag="SB143_001949"
                     /note="aph(3')-IIIa"
     CDS             2080..2874
                     /locus_tag="SB143_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase
                     APH(3')-IIIa"
                     /protein_id="HEF9750439.1"
                     /translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLK
                     MTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEY
                     EDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
                     EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKW
                     YDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
BASE COUNT         1017 a          524 c          759 g          872 t
ORIGIN      
        1 ggaaagaatt gcagagcatg tggcaactgt agatgaggaa aatgtggatt actgtgaatc
       61 attagctgct aaagaatatt ttgcatatta tcatgaggga tttaacagaa gaagtgagaa
      121 ccctatcaat agcagactga attatggcta tgctgttgta agaagtgcaa ttgcaagaaa
      181 actggtggca acgggttttc atccaacttt tggaatacat catgacaatc aattgaatgc
      241 atttaatctg gctgatgatt tgatagaacc gtatcgtgca atagttgatt tagtagcaca
      301 caacaatata gcgtcaaaca ttcagttgac aaaatcagaa agaagagaat tggcgcatgt
      361 attacataat gcctgtattg tcgatggagt caaggttaat gtaatgtcgg cgattgatat
      421 tatggtggaa agtttgaaga ggattatttt agatgcttcg acggaaaaat taaaggtacc
      481 aatgattctg ccgattgaaa gtatggaggg aattacggaa tgagattact tgttattctt
      541 agtccaacag atagatgggg aactaaaaca gagtatacga ggcttcgaaa gtttttacat
      601 aaagatggct atttgcgaat agcaccggaa gcgtatatgc ggatagtgca aaataggaaa
      661 gcatccgaaa aacattacag acgaattgaa gagtacgcac ctaaaaccgg aacagtaaga
      721 cttttacgtt tgacagagaa gcaatataat aacatatatt tggtgacagg agaagcagat
      781 tatcaggaaa aagtagttgg cataaacagt catattatgt tataatgaga cttgtaacag
      841 actaattatc tatatttggg aagttaataa aactttgtac taaatatagt ggttgaatga
      901 cccgccaaaa atggtgcatc gttcaacata aaagagcaaa ataacagaaa actcgaattt
      961 gtcgggcagt tttgaactgg ggattacata ttttgggagg tagatactta tgaaaaccag
     1021 acttgaacaa gttttagaac gctatctcaa cggacgcgag gtagttgtat ggggtgttcc
     1081 gacacgccgt ttgcttcgtg cattaaaacc ttttaaattt cgtgttgacg atcgcgttga
     1141 ccctcaatat cattatgttg ttgctgtaaa cgatgacgac ttatccgact ttttatccga
     1201 tgaacagagc aagtcgtttc aatacgctaa tgactatctg acgtttgacg atgagggagg
     1261 cgaacttccg tttgaacgaa tgtgcttcaa tgtccccgtt ggcaggcaaa cgtattttgg
     1321 agacggtgtc gtaggagctt gcaaaaacgg gtatatcaag agcatcggcc aatttacatc
     1381 gattaacggc acggcagaga tccatgtgaa ccatcagtta aacatgacct ttgtaagcga
     1441 cgatattcaa aacttcttca atgaagagag tatggctata ttccatgaaa agctgcgaaa
     1501 ggacccgaaa cacccttatg cttacagcaa agaacctatg accataggta gcgatgttta
     1561 tatcggcgca catgcattca tcaatgcttc cactgtgaca agcatcggtg acggtgctat
     1621 aatcggctcg ggcgcagtgg ttctggaaaa tgttcctcct tttgctgtcg tcgttggtgt
     1681 ccctgcgaga atcaagcgtt accgcttctc aaaggagatg attgaaaccc tgcttcgtgt
     1741 caaatggtgg gactggagta tagaggaaat taatgaaaat gctgatgcgc ttatatcacc
     1801 tgaactattt atgaagaagt acgggggttt atagcgtata tgcgagtaat acgaaatttg
     1861 tatatcgtga gcataacacg aagccgacaa attccaattt gtagggaaca gaaaatttca
     1921 ggcttccagt gtgtttgaaa gtaacgggcg atttggttga atgacccgcc aaaaatggtg
     1981 catcgttcaa ccaaggaaca gtgaattgga gttcgtcttg ttataattag cttcttgggg
     2041 tatctttaaa tactgtagaa aagaggaagg aaataataaa tggctaaaat gagaatatca
     2101 ccggaattga aaaaactgat cgaaaaatac cgctgcgtaa aagatacgga aggaatgtct
     2161 cctgctaagg tatataagct ggtgggagaa aatgaaaacc tatatttaaa aatgacggac
     2221 agccggtata aagggaccac ctatgatgtg gaacgggaaa aggacatgat gctatggctg
     2281 gaaggaaagc tgcctgttcc aaaggtcctg cactttgaac ggcatgatgg ctggagcaat
     2341 ctgctcatga gtgaggccga tggcgtcctt tgctcggaag agtatgaaga tgaacaaagc
     2401 cctgaaaaga ttatcgagct gtatgcggag tgcatcaggc tctttcactc catcgacata
     2461 tcggattgtc cctatacgaa tagcttagac agccgcttag ccgaattgga ttacttactg
     2521 aataacgatc tggccgatgt ggattgcgaa aactgggaag aagacactcc atttaaagat
     2581 ccgcgcgagc tgtatgattt tttaaagacg gaaaagcccg aagaggaact tgtcttttcc
     2641 cacggcgacc tgggagacag caacatcttt gtgaaagatg gcaaagtaag tggctttatt
     2701 gatcttggga gaagcggcag ggcggacaag tggtatgaca ttgccttctg cgtccggtcg
     2761 atcagggagg atatcgggga agaacagtat gtcgagctat tttttgactt actggggatc
     2821 aagcctgatt gggagaaaat aaaatattat attttactgg atgaattgtt ttagtaccta
     2881 gatttagatg tctaaaaagc tttaactaca agctttttag acatctaatc ttttctgaag
     2941 tacatccgca actgtccata ctctgatgtt ttatatcttt tctaaaagtt cgctagatag
     3001 agttctatat tagagatgta aagagttttg gtgaagaggt tgttgaatga cccgccaaaa
     3061 atggtgcatc gttcaacttc acaagtttat ggtataattt gaatgcgtaa gtagagcaag
     3121 aaatcgttgt ttggcgattt ggtaaatccc aataaattaa ttttataggg aa
//
LOCUS       DARAII010000171         3170 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.173, whole genome shotgun sequence.
ACCESSION   DARAII010000171 DARAII010000000
VERSION     DARAII010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3170
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.173"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            32..328
                     /locus_tag="SB143_001950"
     CDS             32..328
                     /locus_tag="SB143_001950"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750440.1"
                     /translation="MGYRCHIATHYEVKYTGGYFNNSENELLELLEKVELLDDTWMNE
                     GREEIEVSTEAVLYLNLEDYDLNEDEKDFLKDLIEVAKTAPYAKNSGIIRLSWF"
     gene            338..631
                     /locus_tag="SB143_001951"
     CDS             338..631
                     /locus_tag="SB143_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750441.1"
                     /translation="MNFKCCIVEKYEIVYGKGYFQNETQKLEDLFEKLEIDYSEPSDF
                     IIEIPTEQLFSLKLSDYQLDSDELIFIENLIKTAKTAKYCKDFGFIRIDWREQ"
     gene            628..843
                     /locus_tag="SB143_001952"
     CDS             628..843
                     /locus_tag="SB143_001952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750442.1"
                     /translation="MRGFKIIPSKHFAERLQERKIDLSLVALIHQEIAKNPFQKIYKL
                     ISNNSAIIFGVDRDKGIITIITGYPVK"
     gene            853..1344
                     /locus_tag="SB143_001953"
     CDS             853..1344
                     /locus_tag="SB143_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005022168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HEF9750443.1"
                     /translation="MLTMILGTMKAGKSAKLIDKASNILFQDEVIIIRPSCDTREFFT
                     RKYKNDELKRFNFGNENTSLSSYRFIFIDEIQFFKKDFLEQIINLSRKKEITITVAGL
                     LNDVKGNAWDNVETLKSYADEILYLKADCDCCGKKESAIFHIGDGGINNNYFVFCEEC
                     YKM"
     gene            1405..1650
                     /locus_tag="SB143_001954"
     CDS             1405..1650
                     /locus_tag="SB143_001954"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750444.1"
                     /translation="MQRINLTLNNEASLMLDKLAKELKMSKTQILTDALKQMHESKRI
                     EQRKALWIKSFEAFKNDEEHQKEQLELAEAGVGDGII"
     gene            1637..2008
                     /locus_tag="SB143_001955"
     CDS             1637..2008
                     /locus_tag="SB143_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEF9750445.1"
                     /translation="MVSSKIVKYGELWIADFEPQVGEEITKKRPALILSNNLFNSNQK
                     LVFVVPLTTWQDKFYKGIWFLKIDKNATNNLNVDSAINCSQIKSFSKDRLIEKIGEVD
                     EKIMKEVRIILDEILSPQFNS"
     gene            2171..2596
                     /locus_tag="SB143_001956"
     CDS             2171..2596
                     /locus_tag="SB143_001956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750446.1"
                     /translation="MLTYTNELVVAKLARALAYKEAKKDKSKVDFLINLFKKQIRNCI
                     KATEHFTDRVSQRFEEVENDTLSVAISRAIKNTSPLQRGADYHIATTQKYFDEDSNIV
                     VVLERQGEFGAVLVTTYKRGQENLLSDEELADLKKRGVL"
     gene            2859..>3170
                     /locus_tag="SB143_001957"
     CDS             2859..>3170
                     /locus_tag="SB143_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750447.1"
                     /translation="MNILLRNDIDDLNLKEFKKFRECEEAFRLRGMKNKNQEIFVKRM
                     AKGEKIIARISSVIDVKEKVKIEILKISRKEKEIKEEILFEESFFTNYHETQFHDFHG
                     FR"
BASE COUNT         1235 a          360 c          561 g         1014 t
ORIGIN      
        1 gtttaaaaaa aaatatagaa aaggaaaaat tatgggatac agatgtcata tagcaactca
       61 ttatgaagtt aaatatacag gtggttattt taataacagt gaaaatgaat tattggaatt
      121 gttagaaaaa gttgaactac ttgatgatac ttggatgaat gaagggcgtg aagaaattga
      181 agtttctact gaagctgttc tttatcttaa tttagaagat tatgatttaa atgaggatga
      241 aaaagacttc ttaaaagatt taattgaagt tgcaaaaaca gcaccttatg ctaaaaatag
      301 cggcattatt agattatcat ggttttagga ggttaatatg aactttaaat gttgtatagt
      361 tgagaaatat gaaatagttt atggtaaagg gtactttcaa aatgaaacac aaaagcttga
      421 ggatttattt gaaaaattag aaattgatta ttctgagcca agtgatttca ttatagaaat
      481 tcctacagaa cagttgttta gcttgaaatt atctgattat caattagata gcgatgagct
      541 aatctttata gaaaatctta taaaaacagc taaaacagct aaatattgta aagattttgg
      601 ttttattaga atagattgga gagaacaatg agaggtttta aaattattcc tagtaaacat
      661 tttgcggaaa gattgcaaga aagaaaaatc gatcttagtc ttgtggcttt gattcatcaa
      721 gaaattgcaa aaaatccatt tcaaaaaatc tataagctta taagcaataa ctctgctatt
      781 atttttggcg tagatagaga taagggaatt atcacaatca ttacaggcta tcctgtcaaa
      841 taaggagttt caatgcttac aatgatttta ggcactatga aagcaggtaa atctgccaaa
      901 cttatagata aagcttctaa tatattattt caagatgaag ttatcattat tcgcccaagt
      961 tgtgatacaa gggaattctt tacaagaaaa tacaagaatg atgagcttaa acgctttaat
     1021 tttggaaatg aaaatacgag cttaagttcg tacagattta tctttataga tgaaatacaa
     1081 tttttcaaga aagatttttt agaacaaatt atcaatcttt caagaaaaaa agaaataact
     1141 ataacagtag caggtttgct taatgatgta aaaggaaatg cttgggataa tgtggaaaca
     1201 ctaaaatctt atgcagatga aattttatat ttaaaagcag attgtgattg ttgtggcaaa
     1261 aaggaaagcg caatttttca tataggcgat ggtggtatta ataataacta ctttgttttt
     1321 tgtgaagagt gctataaaat gtagtttatt ttgcacataa tttgtgttat aatttgtgta
     1381 taaaattaca cgcaaggaaa acacatgcaa agaattaatt taactctcaa caatgaggca
     1441 agcttaatgc ttgataaatt agcaaaggaa ctaaaaatga gtaaaactca gattttaaca
     1501 gacgcattaa agcaaatgca cgaaagtaaa agaatagagc aaagaaaggc tttatggata
     1561 aaaagctttg aagcatttaa aaatgatgaa gagcaccaaa aggaacaact tgaacttgca
     1621 gaagcaggag tgggtgatgg tatcatctaa aattgttaaa tatggcgaac tttggattgc
     1681 tgattttgaa ccacaagtag gcgaagaaat tactaaaaaa cgccctgcat tgattttaag
     1741 caataatctt tttaattcta atcaaaaact tgtttttgtt gtgcctttaa caacttggca
     1801 agataaattc tataaaggaa tttggttttt aaagattgac aagaatgcta caaacaattt
     1861 aaatgtagac tcagccataa attgttctca aataaagtct ttttcaaaag atagattaat
     1921 tgaaaaaata ggtgaagttg atgaaaagat tatgaaagaa gtcaggataa tacttgatga
     1981 aatcttaagt ccacaattca actcttaatt tctacttttt acactacaac tacacaacac
     2041 aatgttcatt attgaaatat gttgatataa gaatgtagtg cttacttaaa actcgccttt
     2101 aggggatgct tttattccct aaaggggtta ttagtatctc ttattggcta atcaattagg
     2161 agatacaaaa atgttaactt atacaaacga gcttgttgta gctaagcttg caagagcttt
     2221 agcctataaa gaagctaaaa aagacaaaag caaagttgat tttttaataa atctttttaa
     2281 aaaacaaatc cgaaactgca ttaaagcaac agaacatttt acagatcgtg tatcacaaag
     2341 atttgaagaa gtcgaaaatg atacattatc agttgctatt tcaagagcta ttaaaaacac
     2401 ctcacctcta cagcgtggtg ctgattatca tatcgcaaca actcaaaaat attttgatga
     2461 agatagcaat attgttgtcg ttcttgaaag acaaggcgag tttggagcgg ttttagttac
     2521 cacatataaa aggggacaag aaaatttgct ttctgacgaa gaattagctg atcttaaaaa
     2581 aagaggagtt ttgtaatggg cataatatgt atgtttggga tatttagttt agcttatgtt
     2641 ttaatttgcc ttttttgcat gttaatcatg atgtgctttg gcaagttaaa gcctatgagc
     2701 ttattaaggt ttttaatgtt tttcttaaca gtacctttgg tatgtttaga actaatcttt
     2761 gaaggaaaaa agaaatgaaa acagtggttg taaattgggt aaaagatggt attgtcatta
     2821 atgacttttt ttgttgaaac aaaattagga gaataaaaat gaacatatta ctaagaaatg
     2881 atattgatga cttaaattta aaagaattta aaaagtttcg tgaatgtgaa gaagcatttc
     2941 gtcttagagg aatgaagaat aaaaatcaag aaatctttgt caaaagaatg gcaaaaggtg
     3001 aaaagattat agcaagaatt tcctccgtta tagatgtgaa agaaaaggtt aaaattgaaa
     3061 ttcttaaaat ctctcgcaaa gaaaaagaga ttaaagaaga aattttattc gaagaaagtt
     3121 tttttacaaa ttatcatgaa acacaattcc atgattttca tggttttaga
//
LOCUS       DARAII010000172         3145 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.174, whole genome shotgun sequence.
ACCESSION   DARAII010000172 DARAII010000000
VERSION     DARAII010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3145
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.174"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..398)
                     /locus_tag="SB143_001958"
     CDS             complement(<1..398)
                     /locus_tag="SB143_001958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEF9750448.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIRTAVDE"
     gene            complement(398..1003)
                     /locus_tag="SB143_001959"
     CDS             complement(398..1003)
                     /locus_tag="SB143_001959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEF9750449.1"
                     /translation="MDTKISQDLEKFANIPNLKNAITFFGSARLKEDNFYYQQAKILA
                     QKCVQNGFCVISGGGGGIMCAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKRDELKYKITDDLDFIINTLKEI"
     gene            complement(1123..2328)
                     /locus_tag="SB143_001960"
     CDS             complement(1123..2328)
                     /locus_tag="SB143_001960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750450.1"
                     /translation="MINGINSYSSYNYTNTFSKNTSNIKSSNVANDNSSLVSDKSGAV
                     SKMLDYGVDKDGFFTSDFNEAAGLPKDYKIYADGLNNFVNNFIKRQPFYSQIDIAKTI
                     GDAYNSFSSFVKDKGLGESFQEQDLKNLSQKDGVNYWQELQSDNAFIWKLADKNIADL
                     GSNKYQIHDNKISKGGALIAFFINNLSTIKGQTTLLGKLAGLNSDTDNNEIKEFLSFM
                     NKNPLKYSYEQDGWGNPMGDSLSIWNYINRAKNLGDDKLIKTIENLGDEYNKLINSNM
                     SLEEFKTKYLDFKQRHDEFVKSLEETEKAKGVDYSNPLKNTNNKETSEEDKEKPFKPI
                     QAESKNKETYKDDNVRNELVKKLLEGKFSTSDELELLFGMKFSDDNTGEFNKILSLNS
                     TPKGIDIKA"
     gene            complement(2558..2701)
                     /locus_tag="SB143_001961"
     CDS             complement(2558..2701)
                     /locus_tag="SB143_001961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750451.1"
                     /translation="MLENLIAQIIEGIVGCKARKMGFFCIIAVIALAFVLWLVFSHLY
                     GYL"
     gene            complement(2701..3021)
                     /locus_tag="SB143_001962"
     CDS             complement(2701..3021)
                     /locus_tag="SB143_001962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750452.1"
                     /translation="MLKKLASSLILGSLLASSAFAGDFLAKVSNGALSDNSQGVKALN
                     FDEMKEVKGGYAAQNRMAPFLVGGGYWLARQGAMWGVRYAAWGVFSERHPLNSGVGSK
                     GWRY"
BASE COUNT         1019 a          563 c          378 g         1185 t
ORIGIN      
        1 ctttcatcaa cagctgtacg aatgagattg ttttcaagtc ttgcataatg ccctgtagca
       61 agcttttcac agcctaaact tttagcaaat tctaaaagtt ttccaagttt gataaaacgg
      121 ttacataaag cgcaaggatt tggtgtttta ccctctttat aagtatccac aaaaggcatg
      181 taaactttgt ttttaaaatc ttcttgtaag tctaaaatat gataaggaat ttgcaaaaag
      241 tttgcaactt tttctacttt tttgatattt tcttcgtgat aatttggttt gccatgaagt
      301 ttcatataac aacctataac ttcatgacct aaatttttaa gtttataagc agtgactgtg
      361 ctatcgaccc caccgctcat agcgactaga attttcatta aatttccttt aaagtattaa
      421 ttataaaatc caagtcgtca gtgattttat actttaactc atctctttta gaaatcactt
      481 caagtttgag taaagaattt ctgacgaact catcaaaacc tcgccaaaat tcactcccaa
      541 acaaaataat aggaacatct tttttaaatt ctaactgttt taatgtaaga atttcacaca
      601 attcatcaag tgttccaaag ccgcctggga agatcacaaa agctagactc ttttcaataa
      661 gagccatttt gcgtatggct aagctctcaa aagtaatatt atattctaca aaatcattaa
      721 gtttttgctc gtgaggtaaa aatatattaa accctacaga actcattgaa tttgtattat
      781 ttttttgtga aaaagcacct tcgttggctg cacacataat gcctccacca ccaccactta
      841 tcacacaaaa accattttga acacattttt gtgccaaaat tttagcctgc tgataataaa
      901 aattatcttc tttaagtctt gcagaaccaa aaaaagttat ggcatttttt aggtttggta
      961 tattagcaaa tttttctaaa tcttggctta ttttcgtatc catttttata acctttagat
     1021 aaaataaatt tcattctagc taaaaattta taataagttc tttattataa gttttaatag
     1081 gtttatttta ttaagattag gaatttaaag acttttaaat ccttaagctt taatatctat
     1141 accttttggt gtagaattta aagaaagaat tttattaaat tctcctgtgt tatcatcact
     1201 aaatttcata ccaaaaagaa gttctaactc atcgcttgtg ctaaatttac cttctaatag
     1261 tttttttaca agctcgtttc ttacattatc atctttgtaa gtttctttgt ttttactttc
     1321 tgcttgtata ggtttaaaag gcttttcttt gtcttcttct gaagtttctt tgttatttgt
     1381 attttttaaa ggattgctat aatctacacc ttttgccttt tctgtttctt ctagtgattt
     1441 tacaaactca tcgtgccttt gtttaaaatc aagatattta gttttaaatt cttctaggct
     1501 catattagaa ttaataagct tattgtattc atctcctaaa ttctcaatag tttttattag
     1561 tttatcatct cctaaatttt tagctctatt tatataattc catattgata aactatctcc
     1621 cataggattg ccccagccat cttgctcgta ggaatatttt aagggatttt tattcataaa
     1681 ggacaaaaat tcttttattt cattgttgtc cgtatcgcta ttaagtccag ctaatttacc
     1741 cagtaaggtt gtttgtcctt taattgtgct aagattattt ataaaaaacg caattaaagc
     1801 accaccttta gatattttgt tatcatgtat ttgatattta ttagaaccca aatccgctat
     1861 atttttatca gcaagcttcc aaatgaaagc attatcgctt tgtaattctt gccaataatt
     1921 taccccatct ttttgggata gattttttaa atcctgttct tgaaagcttt ctcctaatcc
     1981 cttatcttta acaaaagaag aaaaagagtt ataagcatct cctattgttt tggcaatgtc
     2041 tatttgagag taaaaaggtt gtcttttaat aaagttattt acaaaattat ttaaaccatc
     2101 tgcataaatc ttataatctt ttggcaagcc tgcagcttcg ttaaaatcgc ttgtaaaaaa
     2161 gccatcttta tctacgccat agtctagcat tttacttact gccccagatt tatcgcttac
     2221 aaggcttgag ttatcatttg caacattaga tgattttata tttgaagtat ttttactaaa
     2281 agtatttgtg taattgtagc ttgaataaga atttatacca ttaatcatct ttgccacctt
     2341 gtaaataaaa tttcatttac aaagtaaatc ggcaaaaatg attttttcat taagttattt
     2401 tcttttgcca ataatttgca atccaccaaa gtgtttatca aattgatctt tatatctgta
     2461 gcttataaat aagttggcta tgatgaaaaa taactttttc attttttctc cttttttata
     2521 atttgtaaaa tacaagcaaa ttttgtgcca aactttatca caaataccca taaagatgag
     2581 agaaaaccaa ccacaaaaca aaggctaacg ctatcacagc tattatgcaa aaaaacccca
     2641 ttttacgagc tttgcaacct actatgccct ctatgatttg tgctattaga ttttcaagca
     2701 tcaataccgc caaccctttg agccaacacc cgaattaaga ggatgtcttt cactaaaaac
     2761 gccccaagct gcatatctta cgccccacat agctccttgt cttgcaagcc aataacctcc
     2821 accgactaaa aacggagcca ttctattttg tgcggcatac ccacccttaa cctctttcat
     2881 ctcatcaaaa ttaagagctt taaccccttg agaattatca cttaaagcac cattactaac
     2941 tttagctaaa aaatccccag caaaagcaga acttgccaac aaagaaccta aaatcaatga
     3001 acttgctaat tttttaagca taatttctcc ttatttaatt attttactct ttatttgaat
     3061 aatatcacaa attatatatt aaaatcaaat tttttatttg gaacattcat tgcttttaaa
     3121 aaaatttgaa aatatttaga aaggt
//
LOCUS       DARAII010000173         3124 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.175, whole genome shotgun sequence.
ACCESSION   DARAII010000173 DARAII010000000
VERSION     DARAII010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.175"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..166)
                     /locus_tag="SB143_001963"
     CDS             complement(<1..166)
                     /locus_tag="SB143_001963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbC family protein"
                     /protein_id="HEF9750453.1"
                     /translation="MKIFSKIILGSLALASLLHAQTLIEQQEESLVKGVIPSTKIAKV
                     ERSQIDGFYKA"
     gene            complement(179..1519)
                     /locus_tag="SB143_001964"
     CDS             complement(179..1519)
                     /locus_tag="SB143_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraB"
                     /protein_id="HEF9750454.1"
                     /translation="MKNPFIKFFSNDKSPIDAQKTQNKNKVLIFTGVFVIAGALLFLV
                     GGGDKKESKEKVGNFNLVQDDPMAKTRWVGEASDDLTLAKKRVDNLDTRNKELSKQVS
                     DLKKIVTDMKKENDANKRNYELNLKNMQEAQKKAMESTPATVLEDTLNNKEEDLYKNF
                     PQPNKNAANTQKPSDYGLTHFGDVPELNEVTQTRYTPIQDSLSFTNIAKPEEKEKVEK
                     KSTRHVIPTGSIVKAVLLSGMDAPTMTQAKTEPLPVLMKVTDLSILPNRWGYDINECF
                     LMGEGYGDLTSERAYIRVNNISCVTNKGQKIDMAMKGAATGEDGKLGLRGEVVTKQGA
                     LLARTLIAGFLQGVGEGFANQNQIVTQNGFGGTTTTNSDMSASATLQAGAFKGLSKSA
                     EKLADFYLKMADQVSPVIEIAAGREINIITTATLELKTLEEQQQDSAKKNNNKK"
     gene            complement(1516..2328)
                     /locus_tag="SB143_001965"
     CDS             complement(1516..2328)
                     /locus_tag="SB143_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type-F conjugative transfer system secretin
                     TraK"
                     /protein_id="HEF9750455.1"
                     /translation="MKKVILSALTLSTSLFAINVIDNPSSDIININVSNSSVNRIVLP
                     TQILDVAYSKEKGIDIKISGNQAFIKFLPIQKEQVRSVGKDRYEPVGEPEIVYDKAKG
                     SEVFFVTANRTYSFALNPKNMDAETVIINDFSAQKDEILKYESDDPYMSTMAKITESI
                     LKGGVPQGYKIKKINKVASSDKTLTTRELTNYDGLLYKATLLEVENKTDKAIRLNPKD
                     YISIAKEAPKAISIYYNNEVNHLLPYSKAQIIIITKGGRNTNGGVFDGGMSK"
     gene            complement(2325..2903)
                     /locus_tag="SB143_001966"
     CDS             complement(2325..2903)
                     /locus_tag="SB143_001966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraE"
                     /protein_id="HEF9750456.1"
                     /translation="MLFDKYKNQMDKYIFENITFRIVTLILSFVILVLIWVILARTDS
                     QKVVFMPPKIVNQEFWIAGNQVSKGYLHEMGQFISFNLLNITKENARNNIDNLLTLVD
                     PKFYQEVKTKLLEQMNYIIDNAISRTFFVSAIDADTKGQIKVFGVVKDIISDKVVRSS
                     QSVLKINYIIEQGRFILNDLSIEEEKNNKEKN"
     gene            complement(2907..>3124)
                     /locus_tag="SB143_001967"
     CDS             complement(2907..>3124)
                     /locus_tag="SB143_001967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type IV conjugative transfer system protein
                     TraL"
                     /protein_id="HEF9750457.1"
                     /translation="ILCIFIATAIMFAKGIVAYGIIITFGVVAAKYYEKLKKSRVKGF
                     FFHIIYMLGLRQPKTLPPSYMRYFLGA"
BASE COUNT          959 a          560 c          415 g         1190 t
ORIGIN      
        1 aagccttata aaatccatca atttgacttc tttctacttt agctattttt gttgaaggaa
       61 taacaccttt aaccaatgat tcttcttgtt gttcaataag agtttgagca tgaagtaagc
      121 ttgctaaagc taaagagcct aaaattattt tagaaaagat tttcatgtat ttttctcctt
      181 attttttatt gttatttttc tttgcgctat cttgttgttg ttcttctaag gtttttaact
      241 ccaaagtagc tgtggtgata atgttaattt ctctacctgc tgcaatctca attacagggg
      301 aaacttgatc tgccattttt agataaaaat ctgcaagttt ttcggcactt tttgaaagcc
      361 ctttaaatgc acctgcttgc aaagtagcgc tcgcactcat atcactattt gttgttgtag
      421 ttccaccaaa accgttttga gttacgattt gattttgatt agcaaaacct tctcctacgc
      481 cttgtaaaaa acctgcaatt aaagtcctag caagcaaagc tccttgcttg gtaactacct
      541 caccacgcaa acctaactta ccatcttcac ctgttgcagc acctttcatc gccatatcaa
      601 ttttttgccc tttattagta acacaagaaa tattattaac tctaatgtat gctctttcgc
      661 ttgttaaatc cccatagcct tcccccatta aaaagcattc attaatatca taaccccatc
      721 gatttggtaa aatggaaaga tcggtaactt tcatgagtac aggcaatggc tcagtttttg
      781 cttgagtcat cgtaggggca tccatacctg agagtaaaac agcttttaca atcgagcctg
      841 taggaatgac atgcctagtc gacttttttt ctactttttc cttttcttca ggtttagcaa
      901 tgtttgtaaa agaaagagaa tcttgaatcg gtgtatatct tgtttgtgta acctcattta
      961 attcaggaac atcaccaaaa tgtgttaagc cataatcact tggtttttgt gtatttgctg
     1021 catttttatt tggttgagga aaattcttat ataaatcttc ttctttatta tttagagtgt
     1081 cttctaaaac agttgcagga gtactttcca tagctttttt ctgcgcttct tgcatatttt
     1141 ttaaatttaa ttcataattt cttttatttg catcattttc ttttttcata tcggtgacaa
     1201 tttttttaag atcacttact tgttttgaaa gttctttatt acgagtatct aagttatcca
     1261 ctcttttttt agctaaagta agatcatcac ttgcttcacc tacccacctt gttttagcca
     1321 taggatcatc ttgaacaaga ttaaaattgc ctactttttc tttagattct tttttatcgc
     1381 caccgcctac taaaaaaagc aaagctcctg caatcacaaa aacacctgta aaaattaaaa
     1441 ccttgttttt attttgagtt ttctgtgcat cgataggact tttatcattg ctaaaaaact
     1501 ttataaaagg atttttcatt ttgacatccc cccatcaaat acaccgccat ttgtatttct
     1561 tccgccttta gtaatgatta taatttgtgc tttagaataa ggtaataaat gatttacttc
     1621 attgttgtaa taaatactta tagcctttgg agcttctttt gcaatagaaa tataatcttt
     1681 aggatttagt cttattgcct tatcagtttt gttttcaact tcaagtaaag ttgctttata
     1741 aagcagacca tcataattag ttaactctct tgtggttaag gttttgtcgc ttgaagcaac
     1801 tttattaatc tttttaatct tatatccttg tggaactcca ccttttaaaa tactctcagt
     1861 tatttttgcc atagtggaca tataaggatc atcactttca tattttaaaa tttcatcttt
     1921 ttgtgcgcta aaatcattaa taattacagt ttcagcatcc atatttttag gatttaatgc
     1981 aaaagaatag gttctatttg cagtcacaaa aaaaacttca gaaccttttg ctttatcata
     2041 aacaatttca ggttcaccca caggctcata tctatctttt cctacacttc taacttgttc
     2101 tttttggata ggtaggaatt taatgaaagc ttgatttcct gagatcttaa tatctatacc
     2161 tttttcttta gagtatgcta catctaaaat ttgagtaggt agtacaattc gattaacact
     2221 gctatttgaa acattaatat tgataatatc gctcgaagga ttatcaataa cattaatagc
     2281 aaataagcta gtgcttaaag tcaaagccga taatattact tttttcaatt tttctccttg
     2341 ttattctttt cttcttctat agaaagatcg ttgagaataa atcttccttg ttcgataata
     2401 taattaattt tcaaaacact ttgagatgag cgaaccacct tatcggatat aatatcttta
     2461 accactccaa atactttaat ttgtcctttt gtatccgcat caatagcaga aacaaagaaa
     2521 gtgcgactaa ttgcgttatc aataatataa ttcatttgct ccaaaagttt tgtttttact
     2581 tcttgataaa attttggatc tacaagtgta agcaagttgt ctatattatt tcttgcattt
     2641 tctttggtaa tatttaaaag gttaaaagat atgaattgtc ccatttcatg caaatatcct
     2701 ttcgaaacct gatttcccgc aatccaaaat tcctgattaa caatttttgg cggcataaat
     2761 acaacttttt gcgagtctgt tcttgcaaga attacccaaa taagcactaa aataacaaag
     2821 gataaaataa gcgttacaat acggaaggta atattttcaa atatatattt atccatctga
     2881 tttttatatt tatcaaataa cattttctaa gctcctaaaa aatatctcat atacgaagga
     2941 ggcaaagttt taggttgtct taaacctagc atataaatga tatgaaagaa aaaacctttt
     3001 actcttgact tttttaactt ctcataatat tttgcagcta caaccccaaa agtaataatt
     3061 attccatagg caacaatacc tttagcaaac ataattgcag tagctataaa tatacacaat
     3121 atag
//
LOCUS       DARAII010000174         3124 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.176, whole genome shotgun sequence.
ACCESSION   DARAII010000174 DARAII010000000
VERSION     DARAII010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3124)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3124)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3124
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.176"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1108)
                     /locus_tag="SB143_001968"
     CDS             complement(<1..1108)
                     /locus_tag="SB143_001968"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750458.1"
                     /translation="MKNIVLLGGSNSVLTNGLKNGLQCEESIVLKNYALGACTCLQNL
                     YALILNKNDILDADLLVTESNVNEIHSFCRIKMPLKQLSYIINTYYEELSFLNIKILV
                     LILPICEKHPSNEDIEIINDLHRKNCVKYGFNCIDMQSYYKKNNVFEFFMDLPENHHP
                     METIMNKLGRNIAKNIDAFKYHLQNKNKLHRKYAFFIPEVDTIGNKLETKIKSNSLYR
                     ETIVRITDKAKILFPSKFQGYRVAAIYTWNDFEEECYGTKVFSSLVLENLQTKIVKPS
                     NGWMQFSELHQDFNIDCSTFAYFNSQNTQITENSILIHGRELMLKHVDLIAFFLIKDE
                     YNNLSINMDFNFAHEKTNKLFFDKFIPDLCFLKNV"
     gene            complement(1755..>3124)
                     /locus_tag="SB143_001969"
     CDS             complement(1755..>3124)
                     /locus_tag="SB143_001969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEF9750459.1"
                     /translation="ILIKYYFNDVNHKTKILLDNDVAIVKHSKIRQYDLLDKVFLYEK
                     RIWLKLKNDTKILDIFVNSQKLKLIFNNNFINDLNEVLKVLNKQKKQRSKNSDLWLFA
                     DMSWRADDNAEHLYRYVMHNHPKQKIAFILSKNSIDYPRLKKEGFKLIEPKGFYFKYL
                     IYKADKIISSHIDRYIFNALGGDTLKTKDFIFLQHGVIKDDLSRWLNQRKIDIFITST
                     KAEYNSIIGDCNQYKFSTKEVVLTGLARWDALIKNNILNTKQILIMPTWREYLSGKVQ
                     KYGARARNPEFVKSLYFQKWQEFLCSKELEKLAVQYGYSIVFIPHPQVRMYLEVFNLP
                     SFIITSYKESMQKLFCESSLIITDYSSVAFDMAVLKKPVLYYQFDKDEFFIKHSYAKG
                     YFDYEKDGFGLVVKNGEKLLREFEIILQNNCKLFDTYKNNVNSAFIFRNSSYCKKIYK
                     ILNKY"
BASE COUNT         1148 a          470 c          283 g         1223 t
ORIGIN      
        1 taacattttt caaaaaacaa agatcgggaa taaatttgtc aaaaaacaat ttattagttt
       61 tttcatgagc aaaattaaaa tccatattga tagataaatt gttatattca tctttaatta
      121 aaaaaaaagc aattaaatct acgtgtttca acataagttc tctcccatgt attaaaatac
      181 tattttcagt aatctgagta ttttgtgaat taaaataggc aaatgtagaa caatcgatat
      241 taaaatcttg atgtaattca ctaaattgca tccatccatt gcttggtttc actatcttag
      301 tttgtaaatt ttcaagaact aaacttgaaa atactttagt accgtaacac tcttcttcaa
      361 aatcattcca tgtataaatt gcagctactc gataaccttg aaatttagat ggaaataaaa
      421 ttttagcttt atctgttatt ctaacaattg tttcgcgata taaagaattt gattttattt
      481 tagtttctaa cttattccct atagtatcaa cctctggaat aaaaaaagca tattttcggt
      541 gaagtttatt tttattctgt aaatgatact taaaagcatc gatattctta gctatattac
      601 gccctaactt attcatgata gtttccatag gatgatgatt ttcaggtaaa tccataaaaa
      661 attcaaaaac attatttttt ttataataac tttgcatatc aatacagtta aatccatatt
      721 taacacaatt ttttctatgt aaatcattaa taatttcaat atcctcattt gatggatgtt
      781 tctcacaaat aggtaagatt aatactaaaa ttttaatatt caaaaaactt aattcttcat
      841 aatatgtatt tattatatag ctaagttgtt ttaatggcat ttttatcctg caaaaactat
      901 gaatctcatt tacatttgat tctgtaacca acaaatcggc atctaatata tcatttttat
      961 tcaaaattaa cgcatataaa ttttgaagac aagtacaagc acctaacgca taatttttca
     1021 acactatact ttcttcacac tgtaatccat tttttaatcc atttgttaaa acagaattgc
     1081 ttcctcctag aagtacaata tttttcattt tcttcttcct ctagataaat ttttatttta
     1141 attagatttc ttaaatttaa aaccctttca ataatctcta tacaaatttc aaaatattct
     1201 tttatacatt ttttgagcac taaattacat ccaataatac caaaaaacat gagattattc
     1261 tatcatattt ttcttgatag aaattctcct tctgcaattt tataaaaata ttcttatttt
     1321 aataacaata gttatttttg caaaagttga aactttatta tagattagta atattttttt
     1381 gaccttatta cattaatata aataaatttt tatcaagtac aatccaaaat ttatcttgtg
     1441 gttttataat acaatccgat cgatttatat tttgataata ttcatttttt aaatacaaac
     1501 caaagaaata tcatcatttt tataagtaaa tatttacaaa ttttaattct tacaaacaat
     1561 acatacaatt attttaaaag catccaaaat gttcacatcc aaccaagcgt tactctataa
     1621 tatctaacac caaagccatt gaaatcaaaa aaaagataat aatccgaaaa ttcattaaat
     1681 actattcatt attaaaaagc tttatagctt ttataccaag atagaaatta agtttttatt
     1741 atataagcta tattctaata tttatttagt attttataaa tttttttaca ataactacta
     1801 tttctaaaaa taaaagctga atttacatta ttcttataag tatcaaaaag cttgcaatta
     1861 ttttggagta taatctcgaa ctctctcagc aatttttctc catttttcac aactaaacca
     1921 aaaccatctt tttcataatc aaaataacct ttagcgtacg aatgttttat gaaaaactca
     1981 tctttatcaa attgataata aagcacaggc tttttcaaaa ccgccatatc aaaagcaacg
     2041 cttgaataat ccgttattat taaagatgat tcgcaaaata atttctgcat actttcttta
     2101 taggaagtaa tgatgaaaga aggtaaatta aaaacctcta aatacattct tacttgtggg
     2161 tgcggtataa aaacaatgct atatccatac tgcactgcta gtttttctaa ctctttactg
     2221 cataaaaatt cttgccattt ttgaaaataa agtgatttta caaattcggg atttctagcc
     2281 ctagcaccgt atttttgcac tttcccactt aaatactctc tccaagtagg cataattaaa
     2341 atttgttttg tgtttaaaat attattttta atcaaagcat cccatcttgc taatcctgtt
     2401 aaaactactt cttttgtact aaatttatat tggttacaat cacctattat agaattatac
     2461 tctgcttttg tacttgtgat aaatatatct atttttcttt gattaagcca cctagataaa
     2521 tcatccttta taaccccatg ttgtaaaaaa ataaaatctt tagtttttaa agtatctccg
     2581 cccaaagcat taaaaatata cctatctata tgagaagaaa taattttatc agctttataa
     2641 atcaaatatt taaaataaaa gccttttggt tcaatcaatt taaagccttc ttttttaagt
     2701 cttggataat caattgaatt tttacttaaa ataaaagcaa ttttttgctt aggatgattg
     2761 tgcattacat atctgtacaa atgctcagca ttatcatcgg ctctccagct catatcagca
     2821 aaaagccata aatcagaatt ttttgatctt tgtttttttt gtttgtttaa aacttttaaa
     2881 acctcattta aatcatttat aaaattattg ttaaaaataa gttttaactt ttgtgaattc
     2941 acaaaaatat caagaatttt agtatcattt ttaagcttca gccatattct tttttcatat
     3001 aagaaaactt tatccaataa atcatattgt cttattttag aatgctttac aatagccacg
     3061 tcattatcta ataaaatctt agttttatga ttaacatcat taaaataata ctttattaaa
     3121 attt
//
LOCUS       DARAII010000175         3070 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.177, whole genome shotgun sequence.
ACCESSION   DARAII010000175 DARAII010000000
VERSION     DARAII010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3070
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.177"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(120..1019)
                     /gene="aadE-Cc"
                     /locus_tag="SB143_001970"
     CDS             complement(120..1019)
                     /gene="aadE-Cc"
                     /locus_tag="SB143_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase AadE-Cc"
                     /protein_id="HEF9750460.1"
                     /translation="MQNQDKFLKQFKKLALLDKNIRLVTLEGSRVNKKAKKDKYQDYD
                     ISFFVPLDKMKDFLGLNEKQNFNECKNLPKCILELEKSSYFKKILMLQMPECMEFYPP
                     DLPQNWISFLVLFESGVRLDLTIIPLEDLKNYYEFEPLSQALLDKNGLFTHTIPKAPF
                     SITHLSQRSFDDVCNEFYFLYSCLKKALLRKQFILSNHLLNSLRKALFDLLSFKIGLN
                     FGFEIWLGKEYTNILEFLEEKEVKIILKSFNTATLEHIKKARKKLEILFHKNAKFVAK
                     KSDFKLFPYRKNVKRYCKILGKL"
     gene            1126..1636
                     /locus_tag="SB143_001971"
                     /pseudo
     CDS             1126..1636
                     /locus_tag="SB143_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667477.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
     gene            1875..2990
                     /gene="solA"
                     /locus_tag="SB143_001972"
     CDS             1875..2990
                     /gene="solA"
                     /locus_tag="SB143_001972"
                     /EC_number="1.5.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002819060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-methyl-L-tryptophan oxidase"
                     /protein_id="HEF9750461.1"
                     /translation="MTYDIAVIGSGSVGSFAGYYAAKMGLKTCLIDKFQAPHTQGSYH
                     GDTRIFRIAYGEGEKYIPLLQEAYTLWGEFEKEQNIKLFERCGLLNIGSNSTFMQNVL
                     SSVKNYDLKAKILNAKELQENYNICVSDDFFGVLETDTGFVYSDLSVKSAINAACKLG
                     AHTLCDEIVRICKENGVYKIQTQNSSIQAKQILISAGSYVNEVLGVCEFDLPKVPVGI
                     RRKVVNWFDTDSYKLSQGFPAFILEFEDDYFYGFPDFADGLKVGRDKVGEIISTREER
                     VEFGSYEQDTLDIGKHIKEFFPDLKDFNKGSVCTYPLSPDDDFIIDFLDENLFFMGGL
                     SHGFKFAPALGLLGVKALQTQKLDPSIKQYFSLKRFG"
BASE COUNT         1071 a          422 c          521 g         1056 t
ORIGIN      
        1 ttttatagat taattgttca aggaaaaatt taaatattgg tttcaataaa gataaaaaat
       61 actttagaaa aatatataat caagcataaa gattaagata aagctagaaa ggaaaataat
      121 tacaattttc ctaaaatttt acaatacctt ttcacatttt ttcggtaagg aaaaagctta
      181 aaatcactct tttttgctac aaatttagca tttttatgaa ataaaatttc aagctttttt
      241 cttgcttttt tgatgtgttc tagcgtggcg gtgttaaaag attttaagat gatttttact
      301 tctttttctt ctaaaaattc taaaatatta gtgtattctt ttcccagcca gatttcaaag
      361 ccaaaattta agccaatttt aaaactaagc aaatcaaaaa gtgcttttct caaagaattt
      421 agcaaatgat ttgacaaaat aaactgcttt cttaaaagag ctttttttaa gcaactataa
      481 agaaaataaa actcattgca aacatcatca aagcttcttt ggctaaggtg tgtgatgcta
      541 aatggggctt ttggaatagt gtgcgtaaaa agcccatttt tatccaaaag cgcttggctt
      601 aaaggctcaa attcatagta atttttcaaa tcttctaaag gaataatggt taaatcaagc
      661 ctcactccac tttcaaaaag cactaaaaaa cttatccaat tttgtggcaa atcaggtgga
      721 taaaactcca tacattcagg catttgaagc attaaaattt ttttaaaata tgaagatttt
      781 tcaagctcta aaatacattt tggcaagttt ttacattcgt taaaattttg cttttcatta
      841 agccctaaaa aatctttcat tttatcaagt ggcacaaaaa atgaaatatc atagtcttga
      901 tatttatctt tcttcgcttt tttattaacc cttgagcctt caagtgtaac aaggcgtata
      961 tttttatcta aaagtgctaa ttttttaaat tgttttaaaa atttatcttg attttgcatc
     1021 aatgccctta aaaatgattt taattataca ataatatttt atattttgca agctttgtta
     1081 ctcttatatt ttataatgca acaaatataa aaaaaaggag aaaaaatgaa aactttaatc
     1141 attttcgcac atacattttg ggaagattct aaggtaaata aggctttgtt tgaaagcatt
     1201 aaaaatttaa aacaagtgca aattcacaat cttagcgaaa tttacaaaga gggtaaaatc
     1261 gatgtcagta aagaaatggc tttgttaaaa aatgccgata aaatcatctt tcaatttcca
     1321 ctttttttgg tttagcactc cagcgctttt aaaagagtgg caagataggg ttttaacagc
     1381 aattctttat ggagaaaata aagaactttt aaaagataaa aaatttcaga ttgtaacgac
     1441 tttaggcggc gcgcaagaga gttatgatgg gcatcatggt gcgactttag aagagctttt
     1501 aaagccgatt tgttatgcat ttgaatatct aggatgtaag agtttaaagc cttttgcaat
     1561 ctttagtgca gatgcaaata agcttgattt aaaagcttat caagacgcta taagtcaaaa
     1621 ttcagggtgt tcttaaatac tttttataaa tttaagaaaa tgcttacaac ttacaaaaaa
     1681 tttctaaaac tctagcaata taaaaagctt gaatttaagg tgattgatcg ccttaaattt
     1741 tttaattaaa ttttaatcct caaaatttct aagcaaggga taaattttta ttttttataa
     1801 acactgaact aatatttata gtataatttt ttccaaattt tatgtatcaa attggcgata
     1861 taaaggaaga taaaatgact tatgacatag cggttattgg aagtggtagt gtggggagtt
     1921 ttgctgggta ttatgcggct aaaatgggct taaaaacctg tcttatcgat aaatttcaag
     1981 cacctcatac tcaaggttct tatcatggtg atacaaggat ttttcgtata gcttatggcg
     2041 agggtgaaaa gtatataccg cttttacaag aggcatacac gctttgggga gaatttgaaa
     2101 aagagcaaaa tatcaagctt tttgagcgtt gtgggctttt aaatatcggc tcaaattcta
     2161 cttttatgca aaatgtgctt tcaagtgtga aaaattacga tcttaaagca aaaattctaa
     2221 atgccaaaga attgcaagaa aattataata tttgcgtatc agatgatttt ttcggcgtgt
     2281 tagaaacaga tacaggcttt gtgtatagtg atttgagtgt aaaaagtgct atcaatgctg
     2341 cttgcaagct tggtgcgcat actttgtgtg atgaaatcgt gcgcatatgc aaagaaaatg
     2401 gagtgtataa aatacaaaca caaaattcca gcatacaagc aaaacaaatt ctaatcagtg
     2461 caggaagtta tgtcaatgaa gtattgggcg tgtgtgaatt tgacttgcca aaagtgcctg
     2521 tgggcattag acgcaaagtg gtgaattggt ttgatacgga ttcttataaa ctctcacaag
     2581 gttttccagc gtttatactc gaatttgaag acgattattt ttatggtttt cctgattttg
     2641 cagatggatt aaaagtgggt agagataaag taggggagat cattagcacc cgcgaagaac
     2701 gcgtggaatt tggatcttat gagcaagata ctcttgatat aggtaagcat atcaaagaat
     2761 tttttcctga tttaaaagat tttaacaagg gtagtgtatg tacttatcct ttaagccctg
     2821 atgatgattt tatcatcgat tttttagatg aaaatctctt ttttatgggt gggcttagtc
     2881 atgggtttaa attcgctccc gcacttggac ttttaggcgt gaaagcattg cagactcaaa
     2941 agctagatcc gagtataaag cagtatttta gcctaaagcg ttttggataa agccggataa
     3001 cccttatatt taagggttat ttaatacgct ctaattcttc tataaccaaa ggcaaatctt
     3061 taaagccttc
//
LOCUS       DARAII010000176         3028 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.178, whole genome shotgun sequence.
ACCESSION   DARAII010000176 DARAII010000000
VERSION     DARAII010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3028
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.178"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1788
                     /gene="alaS"
                     /locus_tag="SB143_001973"
     CDS             <1..1788
                     /gene="alaS"
                     /locus_tag="SB143_001973"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEF9750462.1"
                     /translation="IDEIAKLCGKTYIYESGASFRVIADHIRSSVFLLAQGTSFDKEG
                     RGYVLRRILRRALRHGYLLGLKKPFMYNLVDVVCKLMGGHYTYLNEKKDFIKEQICLE
                     EERFLSTIENGIEIFNEELKNTKEVFSGEVAFKLYDTYGFPLDLTQDMLREKNLVVDE
                     AKFEELMNEQKNRAKASWKGSGDKVASGDFKNLLEKFGENCFVGYEKTECQATVLALL
                     DEDFKEVSSLKGLGWVMLDNTPFYATSGGQIADTGYIGTSEVLDTQKFFNLNLSLVKA
                     NEEIKLNDKIIAKIDTDKREQTARHHSATHLLHHALREILGSHISQAGSLVESNKLRF
                     DFTHHKALSKEELESIEKRVNEMIISSSEAILENMPLEDAKKSGAIALFNEKYQGNVR
                     VLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAVVSRAALEFCKTFMNE
                     NLNLKEELKSNDLSLGVKKLKNEILKLKNELKNSNKSQLNSSNINGVQICVECVESGD
                     IKTMIDEFKNKFEKAAILLIQTKDDKITLAAGVKNCPLKAGNLVKNIAQILGGNGGGR
                     DDFATAGGKDISKIDEALKQALDLIQKGL"
     gene            1792..2343
                     /gene="maf"
                     /locus_tag="SB143_001974"
     CDS             1792..2343
                     /gene="maf"
                     /locus_tag="SB143_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEF9750463.1"
                     /translation="MLILASSSVSRSNLLKEAKIEFQQISFDYDENLDKNLKPSIYVQ
                     KIVLEKERQFCTTYEEKFKDETLLFADSIVCIGDKILTKANTKEEACEMLDLQDGKCA
                     SILSAFLLKNLKKRVFSLSKTTLYFSKFDPRDLKDYVENGFYKGKAGAIMCEGFHKNY
                     IIKQEGNLNTALGLDTQNLKAYL"
     gene            2340..>3028
                     /locus_tag="SB143_001975"
     CDS             2340..>3028
                     /locus_tag="SB143_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase domain-containing protein"
                     /protein_id="HEF9750464.1"
                     /translation="MKILKYIFSFFVVCLIAVFIYVAYLFANADTQGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYASYEELPPRLIEALVAIEDTSFFEHDGVNIDAIFRAI
                     VKIIRSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILSKEQILER
                     YLNYIFFGHGYYGVKTAAQGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIA
                     RANNVVARMYT"
BASE COUNT         1120 a          387 c          587 g          934 t
ORIGIN      
        1 atcgatgaaa ttgcaaaact ttgtggtaaa acttatattt atgaaagtgg agctagcttt
       61 agagttatcg ctgatcatat aagatcgagt gtatttttgc tcgctcaagg aacgagtttt
      121 gataaagagg gtaggggtta tgttttacgc cgtattttac gccgtgcttt aagacatggg
      181 tatttattgg ggcttaaaaa accttttatg tataatttag ttgatgtagt ttgcaagctt
      241 atgggtgggc attataccta tcttaatgaa aagaaagatt ttataaaaga gcaaatctgc
      301 ttagaagaag agagattttt gagcactata gaaaacggta ttgaaatttt taatgaagag
      361 cttaaaaata ccaaagaagt ttttagcgga gaggttgcat tcaagcttta tgatacttat
      421 ggttttccac ttgatttaac gcaagatatg ttaagagaaa aaaatcttgt ggtagatgaa
      481 gctaaatttg aagaattgat gaatgaacaa aaaaatcgtg caaaagcttc ttggaaagga
      541 agcggcgata aggtagcaag tggagatttt aaaaatttac ttgaaaaatt tggagaaaat
      601 tgctttgtgg gttatgaaaa aacagaatgt caagccaccg ttttagctct tttagatgaa
      661 gattttaaag aagtttcaag tcttaaaggt ctaggctggg ttatgcttga taatactcct
      721 ttttatgcaa caagtggggg gcaaattgct gatacaggat atataggaac tagcgaagtg
      781 ctagatactc aaaagttttt caatctcaat cttagtcttg taaaagctaa tgaagaaatc
      841 aagctcaatg ataagataat agcaaaaatt gataccgaca aaagagaaca aactgcacgc
      901 catcattcag ctactcatct tttacatcac gctttaagag aaattttggg ttctcatatc
      961 agtcaagcag gttctttggt tgaaagcaat aaattaagat ttgattttac tcatcacaaa
     1021 gctttaagca aggaagaatt agaaagtatt gaaaaaagag ttaatgaaat gatcattagc
     1081 tcaagcgaag caattttaga aaatatgcct ttagaagatg ctaaaaaaag tggagctatt
     1141 gctttattta atgaaaaata tcaaggtaat gtacgcgttt taaccttagg tgaaagtaaa
     1201 gagctttgcg gaggaactca tgtaaaaaat acagctcaaa taggaagttt ttacatagtt
     1261 aaagaaagtg gtgtaagtgc aggtgtaagg cgtatagaag cggttgtttc aagagcagct
     1321 ttagaatttt gcaagacttt tatgaatgaa aatctaaacc ttaaagaaga gcttaaaagc
     1381 aatgatttaa gtcttggggt aaaaaaactt aaaaatgaaa ttctaaaatt aaaaaacgag
     1441 cttaaaaatt ctaacaaatc acagcttaac tcaagcaata tcaatggagt tcaaatttgc
     1501 gttgaatgcg tagaaagcgg tgatataaaa accatgattg atgaatttaa aaacaaattt
     1561 gaaaaagctg ctattttact aatacaaaca aaagatgata agataaccct tgcagcaggt
     1621 gtgaaaaatt gtcctttaaa agctggaaat ttggttaaaa atattgctca aattttaggt
     1681 ggcaatggcg gcggaagaga tgattttgct acagcaggcg gtaaagatat aagcaagata
     1741 gatgaagctt taaaacaggc tttggatttg atccaaaaag gactttaagc aatgttaatt
     1801 cttgcttcaa gttctgtttc tagatcgaat ttgctcaaag aggcaaagat tgaatttcaa
     1861 caaataagct ttgactatga tgaaaattta gacaaaaatt taaagcctag tatttatgtg
     1921 caaaaaatcg tcttagagaa agaaagacaa ttttgcacga cttatgaaga gaaatttaaa
     1981 gatgaaactt tactctttgc agacagcata gtttgcatag gagataaaat tcttactaag
     2041 gcaaatacca aagaagaagc ttgtgaaatg cttgatttac aagatggaaa atgtgctagt
     2101 attttaagtg cttttttgtt aaagaattta aaaaaaagag ttttctctct ttcaaaaaca
     2161 acgctttatt tttcaaaatt tgatcctcgt gatttaaaag actatgtaga aaatggattt
     2221 tataagggta aagcaggggc gattatgtgt gagggttttc ataaaaacta tatcattaaa
     2281 caagagggaa atttaaacac cgctttagga cttgatactc aaaatttaaa ggcttattta
     2341 tgaaaatttt aaaatatata ttttcatttt ttgttgtgtg tttgatcgct gtatttattt
     2401 atgtggccta tctttttgca aatgcagata ctcaaggata tacttttaaa gagtataaac
     2461 ctccacttac aacgcaaatt tacgacagaa atggaaaatt agtagccaat atctttgaac
     2521 aacatcgttt ttatgcaagc tatgaagaat tacccccgcg tcttatagaa gctcttgtag
     2581 ctatagaaga tactagcttt tttgaacatg atggggtaaa tattgatgct atttttaggg
     2641 ctattgttaa aattataaga agtggtggaa aaaccatgga gggagcttca acgcttactc
     2701 aacaatttat caaaaataca gaattaaccc ctgaaagaac tatcactcgt aaaattcgcg
     2761 aagccttgct cgcctataaa atggaaacaa ttttaagcaa agagcaaatt ttggaaagat
     2821 atttaaatta tatctttttt ggacatggat attatggggt taaaacagct gcgcaaggat
     2881 attttcataa aaatctaaat gagttaagcc ttaaagagat tgctatgctt gtgggtatgc
     2941 caaaagcacc aagtagctat gatcctacaa aacatttaga tctttctatc gcaagggcaa
     3001 ataatgttgt agcaagaatg tatacatt
//
LOCUS       DARAII010000177         2933 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.179, whole genome shotgun sequence.
ACCESSION   DARAII010000177 DARAII010000000
VERSION     DARAII010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2933)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2933)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2933
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.179"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..631)
                     /locus_tag="SB143_001976"
     CDS             complement(<1..631)
                     /locus_tag="SB143_001976"
                     /inference="COORDINATES: protein motif:HMM:NF012464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEF9750465.1"
                     /translation="MNFAYLRISTDGKKQKNSFEMQEKAIKTKFEIDEIVKETISGSA
                     EFSKRTALIKMLENLKTGDNVIVFRLDRLSRDLLKSGWIKYEILRRGANLISLDNKGD
                     DINENLKFQILSVFANYEKELIRFRIKNTLNLKKERGEALGGKHPPFGYEFKFENGVK
                     KLKELHQEQLLIKRIYKLRKKPIKDIVKIVNLESDRKLSYKLVQSILKRY"
     gene            complement(1677..2708)
                     /locus_tag="SB143_001977"
     CDS             complement(1677..2708)
                     /locus_tag="SB143_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HEF9750466.1"
                     /translation="MSDIVKYHNDFNKIQLPSFTEQEQNLLCGIISKIRENPINQSIK
                     LTPQELIKFSTQNFTNKALGDMLFILRNKFFKADFMILIEDKERDFIGKEIINLFESF
                     KLWYDKKDTEFKHLLEIELKVNPRFEYIVNEVTKNFTGFKLEEFIALNGKYTKTLYRL
                     LKQYRITGKAYFEWEEFKRIMDIPEDYEIHNIDKWILKPALKELTKERNLFDQIRVPF
                     KNLAYEKEKQKGTRGRGGKVIGITFTFKPENIQMQKLEHESQKIMSDEQKYLKILNNM
                     KLNQVRFDYHDRFWQFNDFDFDEFKIIAIELVRDEYENLNFANHMHFNAKNQEQFFNM
                     VDTFRKRIR"
BASE COUNT          882 a          516 c          414 g         1121 t
ORIGIN      
        1 aataacgttt taaaatactt tgtaccaact tataacttaa ctttctatca ctttctaaat
       61 tgacaatttt tacgatatcc ttgataggtt tttttcgtag tttgtaaatt cttttgatta
      121 aaagttgttc ctggtgcagt tctttaagct ttttaacgcc attttcaaat ttaaactcat
      181 atccaaatgg cggatgtttt ccgcccaaag cttcgccacg ttcttttttt aaatttagcg
      241 tatttttgat ccgaaagcgt attaattctt tttcgtagtt cgcaaaaacg cttagtattt
      301 gaaatttcaa attttcattt atatcgtcgc ctttgttatc aaggctaatt aaatttgcac
      361 cgcgtcttaa aatttcgtat ttgatccagc cagattttag caagtctctt gaaagcctat
      421 ctaaacgaaa aacgattaca ttatcgccag ttttcaaatt ttcaagcatt ttaatcagtg
      481 cggtgcgttt gctaaattcc gcagatccgc ttattgtttc ttttacaatt tcatcgattt
      541 caaatttagt tttaattgct ttttcttgca tttcaaaaga gtttttttgc ttcttaccat
      601 cagtcgaaat tctcaaatac gcaaagttca ttttaaaatt ttaactaaaa aagactaaaa
      661 aatttctttt cagatgaaaa gaacaaaaaa aatcaaattt gcccccttat attttaattt
      721 taaagttatg ttaaaatcag ttctcgaaaa gaaaatttca caaaaaaggg cgccctgttg
      781 ttataattat ttttaattaa attcaagaaa aaaattataa ttttaagttt aatataagtt
      841 ttaattttaa tctaaattta gcaatcaaaa tccaggaatg aaatttcaat ctaaattcca
      901 ggatagcata accaaaatac agatgctccg agtgctctaa taatcaagct cccgcgttgc
      961 aatctttttc cagcaataga gttccccagc gattaaattt cattttaaat tttagttttg
     1021 tcttgtcttt cttttctttc ggtttggcac tcatcgcagt ttaaatttta gcgatttcgt
     1081 gccttacatt gcattgtagg gcttctttgc ttttttcggt gcgaaaaaac gcaaagccct
     1141 tttattgtaa tgtgaaagcc taaaagaatt tagcttttag ctaaaagcta aatttaggct
     1201 tttatttagc ggtaacgctt ttttcttttg atcttttttg cttcgcggac gcacgaaaaa
     1261 ttccgtgcag tagcttcgca aaagcctaaa agaaaaaagc tattttcatt gacgcgtaaa
     1321 acgccccttt tccccctttt ccccctttgc attccccctt tttaccccct ttaacaaccc
     1381 catgtttttt tcgctacgct acaaaaacaa aaggtttggc tatttttatc gcaaggggga
     1441 aagatagggg aattttaagg ggcttagcgt cgcactcaaa cgccgtgcga ctttttacgc
     1501 tattttgctt atttcgctaa aacgcctttc gcttcgctac aaggcttcgc tttttagcga
     1561 aatttcgcaa aagggttttt ttcggctcct agcgtcgcga aaaaagacgc gaaggtaggt
     1621 tttttgcatg attttttttg cgcttacgcc atgcaaaaaa aacaaaaaaa atttaatcat
     1681 ctaatccttt ttctgaaagt atcaaccatg ttaaaaaatt gctcttgatt tttagcatta
     1741 aagtgcatat gatttgcaaa gtttaaattc tcgtattcat ctcttacaag ctctattgca
     1801 atgattttaa attcatcaaa atcaaaatcg ttaaattgcc aaaatctatc atgataatca
     1861 aacctaacct gattaagttt catattgttt aaaatcttta aatatttttg ctcatcgctc
     1921 attatttttt gactttcatg ttctagcttt tgcatttgga tattttcagg tttaaaagta
     1981 aaggttatgc cgataacctt accccctctg ccccttgtgc ctttttgttt ttctttttca
     2041 taagcaagat ttttaaaagg cactctgatt tgatcaaaaa gattgcgttc tttggtaagc
     2101 tctttaaggg ctggttttaa aatccatttg tcgatattgt gtatttcgta atcttctggt
     2161 atatccataa tccttttaaa ctcttcccac tcaaaataag ctttgcctgt gattctgtat
     2221 tgctttaaaa ggcgataaag tgtttttgtg tatttgccat taagggcgat gaattcctcg
     2281 agtttaaagc ctgtaaaatt cttagtaacc tcattgacta tatattcaaa tcttggatta
     2341 acctttaatt ctatctctaa taagtgtttg aattcagtat cttttttatc ataccacaat
     2401 ttaaagcttt caaaaagatt tatgatttct tttcctataa aatctctttc tttatcctct
     2461 atcaaaatca taaaatctgc tttaaaaaac ttatttctta atataaaaag catatcgcct
     2521 aaagctttat ttgtaaagtt ttgagtgcta aatttaatta attcttgtgg agtgagttta
     2581 atactttgat tgataggatt ttctctaatt ttagagatta tgccgcagag taaattttgc
     2641 tcttgttctg taaaactagg caactgaatt ttattaaaat cgttatgata tttaactatg
     2701 tcgctcattt ttagacctta aaatagctaa tcaaggcgag gggctttact gcccctgcgg
     2761 tttcgctaga aaaatacttc aattttaagt ttaaaaaacc taaaatttag atataatctc
     2821 acaaaacgct tactatgtcg cttcatagtt aagccttgat tttgaatttc cgccaagagt
     2881 gaaaactcaa ggcggatttt ttattgtagc atattaaaag taaattgtaa ata
//
LOCUS       DARAII010000178         2919 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.180, whole genome shotgun sequence.
ACCESSION   DARAII010000178 DARAII010000000
VERSION     DARAII010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.180"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..477
                     /gene="pglA"
                     /locus_tag="SB143_001978"
     CDS             <1..477
                     /gene="pglA"
                     /locus_tag="SB143_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEF9750467.1"
                     /translation="KEFYESAEYLKDRANFVLVGGRDDNPSCASLEFLNSGKVFYLGA
                     RSDIVELLQNCDIFVLPSYKEGFPVSVLEAKACGKVIVVSDCEGCVEAISNAYDGLWA
                     KTKDSKDLIEKIQVLLEDESLRINLGKNAAKDALQYDENVIAQRYLELYDRVIKNV"
     gene            470..1072
                     /gene="pglC"
                     /locus_tag="SB143_001979"
     CDS             470..1072
                     /gene="pglC"
                     /locus_tag="SB143_001979"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEF9750468.1"
                     /translation="MYEKWIKRIFDFVLALFLLVLFSPLILITALLLKITQGSVIFTQ
                     NRPGLNEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNEEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            1059..1646
                     /gene="pglD"
                     /locus_tag="SB143_001980"
     CDS             1059..1646
                     /gene="pglD"
                     /locus_tag="SB143_001980"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEF9750469.1"
                     /translation="MARTEKIYIYGASGHGLVCADVATNLGYKECIFLDDFKGKKFES
                     SLPKYDIFIAIGNNEIRKKLFNQISDSGFKIVNLIHKSAIISQSADITEDAGILIMPY
                     VVVNAKAKIKKGVILNTSSVIEHECEVGEFSHISVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKSQSEKGVFVGVPAKRM"
     gene            1801..>2919
                     /gene="pglE"
                     /locus_tag="SB143_001981"
     CDS             1801..>2919
                     /gene="pglE"
                     /locus_tag="SB143_001981"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEF9750470.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEESVKDY
                     AQCENALALNSATAALHLALRVAGVEQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETFNIDIDLLKLAIKESEKKPKALILTHLYGNAAKMDEIVQICEKENIILIEDAAEAL
                     GSFYKGRALGTFGEFGAYSYNGNKIITTSGGGMLIGKDKQKIERARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGDSFVFLDELENS
                     RSNRWLSTALIDFDKNEMNAYQKCIEISQKDLILHPKISKLITDLQKEQIETRPLWKA
                     MHTQEVFKGAKAYVNGNSELFFKKGICLPSGTAMSKDNV"
BASE COUNT         1000 a          340 c          627 g          952 t
ORIGIN      
        1 aaagaatttt atgaaagtgc agagtattta aaagataggg caaattttgt tttagtgggc
       61 ggaagagatg ataatccttc ttgtgcgagt ttggaatttt taaattcagg caaggttttt
      121 tatttgggtg ctagaagtga tatagtagaa cttttgcaaa attgcgatat ctttgttttg
      181 ccaagctata aagaaggatt tccagtaagt gttttagagg cgaaagcttg tggcaaagtt
      241 attgtagtaa gtgattgtga gggttgtgtt gaggcaattt caaatgctta tgatgggctt
      301 tgggctaaga ccaaagatag taaagattta atagaaaaaa tacaagtttt attagaagat
      361 gaaagtttaa gaatcaatct aggtaaaaat gcagctaagg atgctttaca atacgatgaa
      421 aatgttatcg cgcagcgtta tttagaactt tatgataggg tgattaaaaa tgtatgagaa
      481 atggataaaa agaatttttg attttgtttt ggctttgttt cttttggtgc ttttttcgcc
      541 tcttatttta atcactgctt tgcttttaaa aataactcaa ggtagtgtga tttttactca
      601 aaatcgtcca ggtttaaatg aaaaaatttt taaaatttat aaatttaaaa ccatgagtga
      661 tgaaagagat gaaaagggcg agctcttaag tgatgagttg cgtttgaagg cttttgggaa
      721 gattgttaga agtttaagct tagatgagct tttacagctt tttaatgtat taaagggtga
      781 tatgagtttt gtgggtccaa gacctctttt agtagaatac ttaccccttt acaatgaaga
      841 gcaaaaactc cgccataaag tgcgtcctgg tatcacagga tgggcacagg taaatggtag
      901 aaatgcgatt tcttggcaaa aaaaatttga acttgatgtg tattatgtaa aaaatatttc
      961 ttttctacta gatttaaaaa tcatgttctt aacagcctta aaggttttaa aaagaagcgg
     1021 agtaagcaaa gaaggtcatg ttacaacgga gaaatttaat ggcaagaact gaaaaaattt
     1081 acatttatgg tgcgagcgga catgggcttg tttgtgctga tgtcgctacg aatttgggct
     1141 ataaagaatg tattttttta gatgatttta agggtaaaaa atttgaaagc tctttgccaa
     1201 aatatgatat tttcatagct attggaaata atgaaataag aaaaaagctt tttaaccaaa
     1261 tttcagacag tggctttaag atcgtaaatc ttatccacaa aagtgcgatt attagccaaa
     1321 gtgcggatat aacagaagat gctggaattt taataatgcc ttatgtggta gtaaatgcaa
     1381 aagcaaaaat caaaaaaggc gtgattttaa atacttcaag cgtgatagag catgaatgtg
     1441 aggtgggtga gttttcccat ataagcgttg gggctaagtg tgcaggaaat gtcaaaattg
     1501 gcaaaaattg ttttttaggg attaattctt gtgttttgcc aaatttaagt ttggcagatg
     1561 atagcatttt agggggtggg gcgactttag tgaaaagtca aagcgaaaag ggtgtttttg
     1621 tgggagtgcc tgcaaaaaga atgtagatat tttaatcctt aaaaaattac ttttaatctt
     1681 aagatataat aaaaataagc tttgattgca aaagaatttt taatgtttga tacttagtaa
     1741 attattttag ataaaatata tcatcttagt aaaatcactg tttataataa aggataaaaa
     1801 atgaggtttt ttctttctcc tccgcacatg ggtggcaatg agttaaaata tatagaagaa
     1861 gtatttaaaa gcaattatat agctcctttg ggcgaatttg taaatcgttt tgaagaaagt
     1921 gttaaagatt acgctcaatg cgaaaatgct ttggcgctaa attcagctac ggccgctttg
     1981 cacttggctt taagagtagc aggagtggag caagatgata ttgttttagc ttcatctttt
     2041 acttttattg cttcagtggc tcctatttgc tatcttaagg caaaacctgt ttttattgat
     2101 tgtgatgaga cttttaatat agatattgat ctattaaagc ttgctattaa agagagcgaa
     2161 aaaaaaccaa aagccttgat tttaactcat ctttatggca atgcggccaa aatggatgag
     2221 atcgtccaaa tttgcgaaaa agaaaatatt attttaatcg aagatgccgc cgaggctttg
     2281 ggaagttttt acaagggtag ggctttagga acttttggag aatttggagc ttattcttat
     2341 aatggaaata aaatcatcac cacttcaggc ggtggtatgc ttataggtaa agataagcaa
     2401 aaaatcgaaa gagcgagatt ttacagcact caggcaaggg aaaattgttt gcattatgaa
     2461 catttagatt atggttataa ttaccgcttg agtaatgttt taggcgctat tggcgtggcg
     2521 caaatggaag ttttagaaca aagagtgcta aaaaaaagag aaatttatga gtggtataaa
     2581 gaatttttag gtgatagttt tgtcttttta gatgagcttg aaaattcaag aagcaatcgc
     2641 tggttaagca cggctttgat tgattttgat aaaaacgaaa tgaatgctta tcaaaaatgt
     2701 atagaaattt cgcaaaaaga cttgattttg catccaaaaa tttcaaaact tataacagat
     2761 ttgcaaaaag agcaaattga aacacgccca ctttggaaag ctatgcatac tcaagaggtt
     2821 ttcaaaggtg ccaaggctta tgtaaatggc aatagtgagt tattctttaa aaaagggata
     2881 tgcttgccaa gtggcacagc gatgagtaaa gacaatgtg
//
LOCUS       DARAII010000179         2903 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.181, whole genome shotgun sequence.
ACCESSION   DARAII010000179 DARAII010000000
VERSION     DARAII010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2903
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.181"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1210
                     /locus_tag="SB143_001982"
     CDS             <1..1210
                     /locus_tag="SB143_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEF9750471.1"
                     /translation="VVKITSGSKNSQALSKHLDYISRDGNVELITNDFDRYAGEDEIL
                     EVKRIFKNEGSPIPLYKEGAKEKRHTINMVFSMKEHSTTPKEKLQQAVITTLKRMYSN
                     NFFVVAFHNDTDNPHCHVCLKVADKNGKRINPKKADLANLRAEFAKALNELGVEAKAT
                     NKKQREVEINQEFSVKLNTNNEINQAPKIKMHYYQVMDFGEANYQFSTDKNAKKSYYV
                     SYKTKKGITTIWGQDLERVVRENKVLRGEYARFKIVGQEEYEIKRKAKINNKWQEVVK
                     TLKKPIWEVSVIGREKDLKQINKAKTTKKYKIIQDKGVNNERDYTKQYRQRVLQELGN
                     KSTIRRETAQERNSMRILSKQPMVHNTKRTQMLLHINALNQLQQGERGRSDNILRWTS
                     ARNNEIERDG"
     gene            1306..2160
                     /locus_tag="SB143_001983"
     CDS             1306..2160
                     /locus_tag="SB143_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750472.1"
                     /translation="MKKIILILAVLSGCLFASDELNIDSLFKKQIGLRSITSLSLLST
                     GNPHSYYIYPNIGVNGDLNVWNDTKQLYLNQTFIYTLTPNFDLLISGGGNYARQEYNN
                     IISGAFTSKNTLNFDSLWIGFIYTGESIADFVPQIKFQTAIIQREKTVLQTKNFYFQS
                     QNLEASLRGYSDPVVYSIYTGFGYNAQRKFKIAKIDYGNSIYFGGNLSIILSPKITLD
                     LGAEQRFQTEQKINGVKNSEIRSIPTISGGSTYSINQDTAVSVSASLGGSSAAPDAIF
                     GINLWKKF"
     gene            2145..2738
                     /locus_tag="SB143_001984"
     CDS             2145..2738
                     /locus_tag="SB143_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEF9750473.1"
                     /translation="MEKILKIALMVALLPLFLKAEFVVKSYQEIKNEKVVRQNYEESC
                     GAASLATLINTLDDNNLTELDLLKTMSGQKLYTDMVSFADLNDAVKKLGYESKSYKVD
                     RKILENIISVPILVKIEDDPRFPHFVVIINHKGNYLQILDPSYGEYISSKREFYSVWD
                     RYNKGGFALIVNPKKQLKDYKLNLPKSLNFEIEHFGF"
BASE COUNT         1154 a          373 c          489 g          887 t
ORIGIN      
        1 cgttgtaaaa attacttcag gttctaaaaa ttctcaagca ctttcaaaac atcttgatta
       61 tatttctcgt gatggaaatg tagaattgat tacaaacgat tttgatagat atgcgggaga
      121 agatgagatt ttagaagtta aaagaatttt caaaaatgaa ggatctccta ttccattata
      181 taaggaaggt gctaaagaaa aaagacatac cattaatatg gttttttcca tgaaagaaca
      241 ttctacaaca ccaaaagaaa aattacaaca agctgtaatt actactttaa aaagaatgta
      301 ttcaaataat ttttttgtag ttgcttttca taatgatact gataatccgc attgccatgt
      361 ttgcttgaaa gttgcggata aaaatggcaa aagaattaat ccaaaaaaag cagatttagc
      421 aaatttaaga gcagaatttg caaaagcatt aaatgagtta ggagttgaag caaaggctac
      481 aaataaaaag caaagagaag tagaaataaa tcaagaattt tcagttaaat taaatacaaa
      541 taatgagatt aatcaagcac caaaaataaa aatgcattat tatcaagtta tggatttcgg
      601 agaagcaaac tatcaattta gcacagataa aaatgccaaa aaaagttatt atgtgagtta
      661 taaaaccaaa aaaggaataa ctacaatttg gggacaagat ttagaaaggg ttgtaagaga
      721 aaataaagtt ttaaggggtg aatatgcaag atttaaaata gtagggcaag aagaatatga
      781 gataaaaaga aaggcaaaaa ttaataacaa gtggcaagaa gttgttaaaa cacttaaaaa
      841 acctatttgg gaagtatcag taataggtag agagaaagat ttaaaacaga tcaacaaagc
      901 caaaacaaca aaaaaatata aaattataca agataaagga gtgaataatg agagagatta
      961 tacaaaacaa tatagacaga gagtcttaca agagctcggt aataaatcaa ctatccgaag
     1021 agaaactgcc caagaaagaa actctatgcg aatattgtcc aaacagccta tggttcataa
     1081 cacaaaacga actcaaatgc ttttgcacat caatgcactc aatcagttac agcaaggaga
     1141 gcgaggacga tccgataata tcttgcgatg gacaagtgct aggaataatg agattgaaag
     1201 agatggataa tttataaaag aaaggaataa aatataaaga atatactaaa aatttggaac
     1261 gctccttgct taatttttca aagcaatatt ttaaaaggta ataaaatgaa aaaaattatt
     1321 cttattttgg cagttttaag tggttgtctt tttgctagcg atgagctaaa tatcgatagc
     1381 ttgtttaaaa agcaaatagg cttaagaagc attacaagtt tatccttgct tagcacagga
     1441 aatcctcact cttattacat ttatccaaat attggagtaa atggagattt aaatgtttgg
     1501 aatgatacaa agcaacttta tttgaatcaa acttttattt atacgcttac acctaatttc
     1561 gatttactta tttcaggcgg tggaaattat gcaagacaag agtataacaa tattatttca
     1621 ggtgctttta caagcaaaaa tactttaaat tttgattctt tatggatagg ctttatttat
     1681 acaggagaaa gcattgctga ctttgttccg cagattaaat ttcaaacagc gatcattcaa
     1741 agagaaaaaa cagttttgca aactaaaaac ttttattttc aatcccaaaa cttagaggca
     1801 agtttaagag gatatagcga tccagtggta tatagtattt atacaggatt tggttataac
     1861 gcccaaagaa aatttaaaat cgcaaaaata gattatggca atagtattta ctttggtgga
     1921 aatttatcta taattttaag ccctaaaatt actttggatt taggagcaga acaaagattt
     1981 caaaccgaac aaaaaatcaa tggtgtaaaa aattcagaaa tcagatcaat tcctacaatt
     2041 agtggcggtt ctacttatag cataaatcaa gatactgctg tttcagtcag tgcaagtcta
     2101 ggtggaagct ctgctgctcc tgatgcaatt tttggtatca atctatggaa aaaattctaa
     2161 aaatagcatt aatggttgct cttttgcctt tgtttttaaa ggcagaattt gtagttaagt
     2221 cttaccaaga aatcaaaaat gaaaaagttg taaggcaaaa ttatgaagaa tcttgtggtg
     2281 ctgcttcttt ggctacgctt attaatacac ttgatgataa taatttaaca gaattagatt
     2341 tattaaaaac catgagtgga caaaaacttt atacagatat ggtaagcttt gcagatttaa
     2401 atgatgcagt aaaaaagctt ggctatgaaa gcaagtctta taaagtcgat agaaagattt
     2461 tagaaaatat tatatctgtt cctattttag ttaaaattga agatgatcca cgctttccac
     2521 attttgtggt gattataaat cataaaggta attatttaca aatacttgat ccaagttatg
     2581 gagaatatat cagttctaaa agagaatttt atagtgtttg ggatagatac aataaaggtg
     2641 gatttgcttt aattgttaat cctaaaaaac aactcaaaga ttacaaactc aatttaccca
     2701 aatctttaaa ttttgaaata gaacattttg gattttaata tcgcaattaa gcgatattaa
     2761 tttcttttta tttacttcct aaaccctagt ttgtcctata agattattaa gtctatccat
     2821 tatagaatca gcgtaggagt taatggtgct aggttttgct ttccagccat tggcaatggc
     2881 ttgtttaatt tcagcatcta aag
//
LOCUS       DARAII010000180         2883 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.182, whole genome shotgun sequence.
ACCESSION   DARAII010000180 DARAII010000000
VERSION     DARAII010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2883
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.182"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..505
                     /locus_tag="SB143_001985"
     CDS             <1..505
                     /locus_tag="SB143_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thioredoxin fold domain-containing protein"
                     /protein_id="HEF9750474.1"
                     /translation="NDRDAWQSEVSAKQVKDLNLKEVTQYAKKVDFGKGSKKYEFVLF
                     TDPECPFCARVEELFIKKDVSVYVNFFPLSIHPHAEQWSKEILSAPDFKEALIKLRET
                     QKDLEVKITPQAEQTLKNMRELGEKLNIMGTPKLLVVDKKKKKIIDVIDGANMQKINS
                     YLDKDKQ"
     gene            502..1503
                     /locus_tag="SB143_001986"
     CDS             502..1503
                     /locus_tag="SB143_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEF9750475.1"
                     /translation="MIKNGVITLSLAASIFLGACSMLPYKENFSCEKGKDNGMCGSVI
                     EVYDLSSDMDELRKKTDREYEQKHPEVKAEAKTKAEQEARDSFRTLKLQEMVESVEIR
                     KIQNETPTIFRYYLSEEEASNKADVALISENDKESKAIRKDLKNQTKKANSQTNKNTK
                     NGKNTHLKHSNKSASKNDSKIKNNANKETNINKLYDGIKIYDNNESGIKDANLTNKEG
                     NASSVNTLDINFTKSNAEQNLSTANTNTNGIDKNSQVTNEPAIDCSASSDSKITQING
                     KVKVCVYHANIREMPSCKALVLRVANQGEELEALYEQGGWIKLKDGTYVHKSIVTKD"
     gene            1472..1975
                     /locus_tag="SB143_001987"
     CDS             1472..1975
                     /locus_tag="SB143_001987"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEF9750476.1"
                     /translation="MYIKASLQKISLVSLALAFSLTNLSAKEAQTSEYDNNLLLKKAV
                     LKLYRENQELEKRVAVLEEKLGIPKPEQNASVVNPKPLDQNAFVFLSRVKDEFRKGRK
                     IVLGQAIKDTKYYSKPSISSRVVGNVAKGKRIIIKGVTEQNGNAWYKIEDWMYIDASA
                     VSFRSKK"
     gene            1972..2418
                     /locus_tag="SB143_001988"
     CDS             1972..2418
                     /locus_tag="SB143_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750477.1"
                     /translation="MNKKSILILCATLLFTACASKQQITKEPSVDAQLKLLVDGGMKY
                     TDLDKQDEDELIRGLLKNSPSFAQSNQQSAVKENMVKLPNNMPLFRQPLFAQMVVFPY
                     VSDDGIYHGYSESWLKIKEGEFVLSDPRSKQDPSERIFDMNDVGTK"
     gene            2415..>2883
                     /locus_tag="SB143_001989"
     CDS             2415..>2883
                     /locus_tag="SB143_001989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002839368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraC family protein"
                     /protein_id="HEF9750478.1"
                     /translation="MSLSDFINEKLGINQSVKKITSLQTNVWNACMQRYKFSDFLPYM
                     SYDSQKEYYINNDNSFGTVFLCSPRIRMGESTAVAVEEMLGKLPENMFIQFTLFGSKN
                     IKDIVEYWKYMHLERADRENNELLFKAIKNMEEFYYSKTKEGISSSMTTRLKNY"
BASE COUNT         1151 a          369 c          517 g          846 t
ORIGIN      
        1 caatgataga gatgcttggc aaagcgaagt tagcgctaaa caagttaaag acttaaattt
       61 aaaagaagtc acacaatacg ctaaaaaagt agattttgga aagggttcta aaaagtatga
      121 gtttgttctt tttaccgatc ctgaatgtcc gttttgcgca agagtagaag agctttttat
      181 caaaaaagat gttagtgttt atgtaaattt ctttccttta agtattcacc ctcatgctga
      241 acaatggagt aaagaaattt tatctgcgcc tgatttcaaa gaagctctaa ttaaacttag
      301 agaaactcaa aaagatttag aagtaaaaat tactccacag gctgagcaaa ctcttaaaaa
      361 tatgagagaa ttaggtgaaa agctaaatat tatgggtact ccaaaacttt tagtagtgga
      421 taaaaaaaag aaaaaaatca ttgatgtaat tgatggagca aatatgcaaa aaatcaattc
      481 ttatttagat aaggataagc aatgattaaa aacggtgtaa ttacattatc tttagctgcc
      541 tctatctttt taggagcttg ctctatgttg ccttataaag aaaacttttc ttgtgaaaaa
      601 ggaaaagata acggaatgtg tggctcggtg attgaagtgt atgatcttag ttctgatatg
      661 gatgagctta gaaaaaaaac agatagagaa tatgagcaaa aacatcctga ggtaaaagct
      721 gaagcaaaaa ctaaagctga acaagaagca agagatagtt ttagaacctt aaaacttcaa
      781 gaaatggttg aatctgtaga aattcgtaaa attcaaaatg aaacgcctac tatttttaga
      841 tactacttaa gcgaagaaga ggcaagcaat aaagctgatg tcgctttaat cagtgaaaat
      901 gataaagaaa gcaaggcaat tcgaaaagat ttgaaaaatc aaactaaaaa agcaaattcg
      961 caaacaaata agaatacaaa aaatggtaaa aatactcatt taaaacattc taataaatct
     1021 gcatctaaaa atgatagcaa gataaaaaat aatgccaata aagaaaccaa tattaataaa
     1081 ctttatgatg gcattaaaat ctatgacaat aacgaaagtg gaataaaaga tgcaaatctt
     1141 acaaataaag aaggtaatgc aagctcagtc aatactttag atataaattt tacgaaatct
     1201 aatgctgaac aaaatctttc aactgcaaat acaaatacaa atggtattga taaaaattca
     1261 caagttacta atgagcctgc tatagattgt tctgcaagtt cggattcaaa aatcactcaa
     1321 attaatggca aggttaaagt ttgtgtttat cacgcaaata ttagagaaat gccttcttgc
     1381 aaagctcttg ttttaagggt ggctaaccaa ggcgaagaat tagaagcttt gtatgagcaa
     1441 ggcggatgga ttaaattaaa ggatggaact tatgtacata aaagcatcgt tacaaaagat
     1501 tagtttagta agtttagctt tggctttttc tttaacaaac ctaagtgcta aagaagctca
     1561 aacaagcgaa tatgataata acttgttatt aaaaaaagct gttttaaaac tttatagaga
     1621 aaatcaagaa cttgaaaaaa gagtagcagt tttagaggaa aaattaggca ttccaaaacc
     1681 tgaacaaaac gcttcggttg taaatcctaa acctttagat caaaacgctt ttgtattttt
     1741 atcaagggta aaagatgagt ttagaaaagg tagaaaaata gttttagggc aagccattaa
     1801 agatacaaaa tactattcta aaccttcaat ctcatctagg gtagtaggta atgtagctaa
     1861 aggtaaaaga attatcatta aaggcgttac agaacaaaat ggcaacgcat ggtataagat
     1921 cgaagattgg atgtatattg atgcaagtgc tgtttcattt aggagtaaaa aatgaataaa
     1981 aaatctatat taattttatg cgcaacgcta ctttttacag catgtgcaag taaacaacaa
     2041 atcactaaag aaccaagtgt tgatgctcaa ttaaaattac ttgttgatgg tggtatgaaa
     2101 tatacggatt tagacaaaca agatgaagat gaacttattc gtggattgct taagaattca
     2161 ccttcttttg cacaaagcaa tcaacaaagt gcagtaaaag aaaacatggt gaagttgcca
     2221 aataatatgc ctttgtttag acaaccttta tttgcacaaa tggttgtttt tccttatgta
     2281 agtgatgatg gtatttatca cggctatagt gaaagttggc taaaaatcaa agaaggcgag
     2341 tttgttctta gcgacccaag aagcaaacag gatccaagtg aaagaatttt tgatatgaat
     2401 gatgtaggta caaaatgagt ttaagtgatt ttattaacga aaaattaggt attaatcagt
     2461 ctgtaaagaa gattacttct ttgcagacta atgtgtggaa cgcttgcatg caaagatata
     2521 aattttcaga ctttttacct tatatgagct acgattctca aaaagaatat tatattaata
     2581 atgataattc ttttggaaca gtttttttgt gttctccaag aattagaatg ggtgaatcta
     2641 ctgctgttgc tgttgaagaa atgctaggca aattgcctga aaatatgttt atacaattta
     2701 cactttttgg aagtaaaaat atcaaagata tagttgagta ctggaaatac atgcacctag
     2761 aaagagctga tagagaaaat aatgagcttt tgtttaaggc aattaaaaat atggaagagt
     2821 tttattattc caaaaccaaa gaaggtattt caagttctat gactacaaga ttaaaaaatt
     2881 act
//
LOCUS       DARAII010000181         2848 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.183, whole genome shotgun sequence.
ACCESSION   DARAII010000181 DARAII010000000
VERSION     DARAII010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2848
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.183"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..432
                     /locus_tag="SB143_001990"
     CDS             <1..432
                     /locus_tag="SB143_001990"
                     /EC_number="6.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="GluRS2; in Helicobacter this enzyme was found to
                     misacylate tRNA-Gln with glutamate which is further
                     transamidated to glutamine; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEF9750479.1"
                     /translation="SKAPARFDLKKLLQINREHIKMMADNELNTALNLNKDLAQLAKF
                     YTQEASTIKEIKEKLEAIFGAKDFNEFEPECKILKDLLSQIEPFESYEEFKSYLLEKS
                     QLKGKKFFMPLRIILTGNTHGPELSDLYPYIKNYINELARI"
     gene            436..717
                     /locus_tag="SB143_001991"
     CDS             436..717
                     /locus_tag="SB143_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEF9750480.1"
                     /translation="MVVDSLIISIFQVIQIIINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGSIDLAPLIIVLALQFLSIFLGNILRSLL"
     gene            711..2342
                     /locus_tag="SB143_001992"
     CDS             711..2342
                     /locus_tag="SB143_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEF9750481.1"
                     /translation="MVRKILILLSLSLVFLNASPYNLERLKQEENSIAKDYYIYRLLE
                     KKTISKKEAEGLNSHIFRYVGKIKSELEKIIPVKIFIDPKYAPCYNYTKVNILDANQT
                     CQSIRLNSIAFIASLDNASRSALAQKLSHQRGDLANLLLAFNTPEPIAYIIQKEDVNG
                     FFRLRNYSKKYDFDLNASFANKLPTHVGFKNFAQNIIIKKENPKFRASMLKIDPTFVN
                     EDSAFYLGINALAYNKEELAYNFFAKAAQTFKMQSNKDNAIFWMWMIKKDDKDLQTLA
                     KSSSLNIYSLYAKELTNSEFLKIEVIDSTNKKKNNFNMQDPFAWQKLNKQIREADASE
                     LDRLAKEFDSKETLPIYAYILERKSKFKNHYFIMPYYEYIKDYSAPRQALILAIARQE
                     SRFIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFEPKNAYYFGNHHLNY
                     LEKHLKSPLFIAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMEFVPYQESRIYGKKV
                     LANYIVYRRLLNDSIKISDIFENLTQNKAGDLNKS"
     gene            complement(2239..2724)
                     /locus_tag="SB143_001993"
     CDS             complement(2239..2724)
                     /locus_tag="SB143_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750482.1"
                     /translation="MKIYTLALAMLVFSACSLKEEAVVDANLKTQTLMFAQKYKITQD
                     KMNAIITLSYLNPILDKASEEDIFALTITPDTLKIENLEIFINERKANIEELDEEFFK
                     YLIQNRYTRYLKITLPSVKKEDKITAKICLNHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
BASE COUNT         1041 a          448 c          396 g          963 t
ORIGIN      
        1 tctaaagctc cagcgagatt tgatcttaaa aaacttttgc aaatcaatcg cgaacatata
       61 aaaatgatgg cagataatga actcaatact gctttaaatt taaataaaga tctagcacaa
      121 cttgccaaat tttataccca agaagcaagc accatcaaag aaatcaaaga aaaactagaa
      181 gctatctttg gtgctaaaga ttttaacgaa tttgaaccag aatgtaaaat tttaaaagat
      241 cttttaagtc aaatcgaacc ttttgagagt tatgaagagt ttaaaagcta tctcttagaa
      301 aaaagtcaac taaagggtaa aaaatttttt atgcctctaa gaattatcct aactggaaat
      361 actcatggcc ctgaattaag tgatctttac ccttatataa aaaattatat taacgaatta
      421 gcaaggatat aaataatggt tgtagattct ttgattattt ctatttttca agtgattcaa
      481 attattatca atatttacac ttggattatc atcatcacag cacttttaag ttgggtaaat
      541 cctgatcctt acaatcctat cgttcaaatt ttatacaagc taagctaccc tgcttatgct
      601 ttagtgagaa aaattccaac acgcatagga agcatagatc ttgcgccttt gattatcgtt
      661 ttagccttac aatttcttag tatttttctt ggaaatatcc taaggagctt attgtgagaa
      721 aaatacttat cttacttagc ttaagcttag tatttttaaa tgctagcccc tataatttag
      781 aaagattaaa acaagaggaa aattccatag ctaaagatta ttatatctat cgtcttttag
      841 aaaaaaaaac aataagtaaa aaagaggctg aaggcttaaa ttctcatatc ttccgctatg
      901 taggtaaaat caaatccgaa cttgaaaaaa taattcctgt aaaaattttc atcgatccta
      961 aatacgctcc atgctacaac tacacgaagg ttaatatact cgatgcaaat caaacttgcc
     1021 aaagtataag attaaactca atagccttta tagcaagcct tgataatgct agccgaagtg
     1081 ccttagctca aaaacttagt catcaaagag gcgatttggc taatttactt ttagctttta
     1141 acactcccga acctatagct tatatcattc aaaaagaaga tgttaatggt ttttttagac
     1201 ttcgtaatta ttctaaaaaa tatgattttg atttaaatgc tagttttgct aataagctgc
     1261 caactcatgt aggatttaag aattttgcac aaaatattat cataaaaaaa gaaaatccca
     1321 aatttagggc ttcaatgcta aaaatagatc caacatttgt aaatgaggat tctgcttttt
     1381 atttaggcat taatgcctta gcctacaaca aagaagaact ggcttacaat ttctttgcca
     1441 aagcagcgca aacttttaaa atgcaaagca acaaagacaa tgctatattt tggatgtgga
     1501 tgattaaaaa agatgataaa gatttgcaaa ctttagccaa aagctcttct ttaaatatct
     1561 atagtcttta cgctaaagaa ttaacaaatt ctgaatttct taaaatcgaa gtcatagatt
     1621 ctacaaataa gaaaaaaaac aatttcaata tgcaagatcc ttttgcatgg caaaaactca
     1681 acaaacaaat tcgcgaagct gatgcaagcg aacttgatag attggctaaa gaatttgact
     1741 caaaagaaac tctgcctatc tatgcttata tcttagaaag gaaatcaaaa tttaaaaacc
     1801 attattttat aatgccttat tatgaataca ttaaagatta tagcgcccca agacaagcgc
     1861 ttatcttagc cattgctaga caagaaagcc gttttatccc tactgcgata tcggtttctt
     1921 atgctttagg tatgatgcaa tttatgccat ttttagccaa tcatatcggc gagaaagaat
     1981 taaaaattcc aaattttgat caagatttta tgtttgagcc aaaaaatgcc tattattttg
     2041 gaaatcatca tttaaattat ttagaaaaac atttaaaatc tcctcttttt attgcttatg
     2101 cttataatgg aggcataggc tttaccaatc gtatgcttgc aagaaatgat atgtttaaga
     2161 caggcaaatt cgaacctttc ttgtctatgg aatttgttcc ttatcaagaa agtcgaattt
     2221 atggaaaaaa agtattggct aattatattg tgtatcgacg tcttctgaac gatagtataa
     2281 agatttcgga tatttttgaa aatttaactc aaaacaaggc aggtgattta aacaaatctt
     2341 agctgtaatt ttgtcttctt tttttacgct tggaagagtt atttttagat aacgggtata
     2401 acgattttgt atcaagtatt taaaaaactc ttcatcaagt tcttctatat tagcctttct
     2461 ttcattgata aaaatttcta aattttctat cttcaaagta tcaggagtga tagtcaaagc
     2521 aaaaatatcc tcctcgctag ctttatctaa aataggattt aaataagaca gggtaattat
     2581 agcattcatt ttatcttgag taattttata tttttgagca aacattaaag tttgagtttt
     2641 caaattcgca tccacaaccg cttcttcctt taaagaacaa gcactaaaaa ctaacattgc
     2701 aagagctaaa gtataaatct tcatattttt cctaattttt ttctatattt taacctttta
     2761 actctatttt ttggtttaaa atactataat ttacatttta ttttaggaaa atggtaatga
     2821 aaaaatcaat catagctttt agcggtcc
//
LOCUS       DARAII010000182         2842 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.184, whole genome shotgun sequence.
ACCESSION   DARAII010000182 DARAII010000000
VERSION     DARAII010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2842
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.184"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..383)
                     /locus_tag="SB143_001994"
     CDS             complement(<1..383)
                     /locus_tag="SB143_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEF9750483.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIVGLGCEVIQAKVVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIEKGIKIV"
     gene            complement(386..649)
                     /locus_tag="SB143_001995"
     CDS             complement(386..649)
                     /locus_tag="SB143_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEF9750484.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            complement(646..1554)
                     /locus_tag="SB143_001996"
     CDS             complement(646..1554)
                     /locus_tag="SB143_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEF9750485.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIHYCEFGISKGLNGLFCN
                     GSAGDSQALSIEEQVKLMRLTKEVAKNNVPIITGIASTIYQNTFTLAQKAYEIGLDAL
                     LLAMPYYYKLSEDALFEYVKDLSSKVKLPLYVYNIPLFAPALSLKFIERVSKLDNVVG
                     IKDSSGDALLLNHILDVLPSNFDVFVGREEFYVGALLAGAKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            1787..2548
                     /locus_tag="SB143_001997"
     CDS             1787..2548
                     /locus_tag="SB143_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEF9750486.1"
                     /translation="MHQPTLRVLNILELLAKEKLTLSTIAKKLNIPAGTLWPILQTLQ
                     EKQYIRCDLKNKSYYLDFKILELGYNIKSENSIFEMIKKHMKNIRNLTNQTCQMGILK
                     EENVLYLEKIDANNPVQLKSFIGTSYPAYATSLGKALLSNKNKEELKKIYPNNFEKIT
                     ENTLKNIDELYQQIEQIKKEKIAIESGEINPQIECMAIGIEHKNKIIAAISISYLIFY
                     SNETFREKNKKILLEEKNKIEKALKIHFNDLEELY"
     gene            complement(2573..>2842)
                     /locus_tag="SB143_001998"
     CDS             complement(2573..>2842)
                     /locus_tag="SB143_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750487.1"
                     /translation="EENERILRLGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTK
                     VLTEASIAGKFDYLEDLKENVILGRMIPVGTGLYGEQNLKLKEQE"
BASE COUNT         1029 a          507 c          333 g          973 t
ORIGIN      
        1 actattttaa tacctttttc aatagtattt ttactaccac cgcattcttg tatcactaaa
       61 tattcaacct ttttataagg cgttgcttct ttgatttttt ctgctactac tttagcttgt
      121 attacctcac aaccaagccc tacaattaaa acaccaaaaa cattggcatt gctcccatga
      181 cctatcaaaa catctctggt ttgcaaagca tcaaattcaa gctgggagca accatgctga
      241 tggttgatat aaaccgctcc attacatttt ctagctatat tttcacacac tttattagca
      301 caatgtacac ttggtatgat aatgacttta tttcttaagc caaattttcc atcttctctt
      361 ctatagccca ttatcttttt catatttatt ccttatctcc acgacctcta attcccgcag
      421 tattatggat atgcacccat tcccctgtac taatatcgca acttgcacta gctatagctt
      481 ctgcgtattt gataataatt tcatcttttt ttatatcctt tagtgcaaat ttatgtccgc
      541 ttgcaatatc atttaaaagc tcaatatttg ccactttttc gcctttttta aagtcacgca
      601 aagctgtggc aacattgtct ttttcattga ctataatata tcctttcata gttttatacc
      661 tgtttctttt tctatagttt taataagctc ttttgcttca tcaaagcgag tgtttaattc
      721 ttcttttgta gcaggtgata aaggatgaat actagcattt acaaattcaa atcctctggc
      781 ctttaaaagc aaagcaaaac ccataggaaa agctatgctc ataccaaatc ttatggcctt
      841 taataaactt ttttgtatta gcaaagctct gcctatattt ttttcattga ttgatttgta
      901 aatttcgctc ataagttctg gaaaaactcc acctatgcta gtcatagaac cttttgcacc
      961 tgctaataat gcacctacat aaaattcttc tcttcctaca aaaacatcaa aattgctagg
     1021 tagcacatct aaaatatgat ttaaaagcaa agcatctcca ctactatctt ttataccaac
     1081 aacattatca agctttgaaa ctctttctat aaattttaag cttagtgctg gtgcaaaaag
     1141 aggtatatta taaacataca agggaagttt cactttagaa gatagatctt ttacatattc
     1201 aaaaagcgca tcttcactta atttataata ataaggcata gcaagcaaca aagcatcaag
     1261 acctatttca taagcttttt gtgccaaagt aaaagtattt tgataaattg ttgaagcaat
     1321 acctgtaata atgggcacat tattttttgc aacttctttt gtgagtctca ttaatttaac
     1381 ttgttcttca atgcttaaag cttgagaatc tcccgcgctt ccattacaaa ataatccatt
     1441 taaaccttta gaaataccaa attcacaata gtgaataaat tctttttcat taatacttcc
     1501 atcatcttta tatggagtaa gcaaagccgg taaagttcct tttaaaattc ccatttttat
     1561 tttcctttcg tatatacaaa aatatattta tatacaaaaa atataacaaa atatttgtaa
     1621 aaaatcaaat taagaatatg gtgtaaaatt cacattccat ccttaataac taccgattct
     1681 tacaaaaaat tatcgaaatt tatcaataaa taattttttt attttgtgtt actaaaagta
     1741 aaaattatgc tagaatttat aaaaacaaaa caaggataaa agcattatgc atcagcctac
     1801 tcttagagtt ttaaatattt tagaactgct ggcaaaagaa aaacttacct taagtactat
     1861 agccaaaaaa ctaaatattc cagctggaac tctttggcct attttgcaaa ctctacaaga
     1921 aaaacaatac atcagatgcg atttaaagaa taaaagctat tatttagatt ttaaaatttt
     1981 agaattagga tacaatataa aaagtgaaaa tagtattttt gaaatgatta aaaaacatat
     2041 gaaaaatata agaaatttaa caaatcaaac ttgtcaaatg ggaattttaa aagaagaaaa
     2101 tgtgctctat ttagaaaaaa ttgatgcaaa taatccagta caattaaaat ctttcatagg
     2161 cacctcttat cctgcttatg caacttcttt aggcaaggct ttattgtcca ataaaaataa
     2221 agaagaatta aaaaaaattt atccaaacaa ttttgaaaaa atcacagaaa atacactaaa
     2281 aaatatagat gaactctatc aacaaatcga acaaattaaa aaagaaaaaa ttgctattga
     2341 aagcggagaa atcaatccgc aaattgaatg tatggctata ggtatagaac ataaaaacaa
     2401 aataattgcc gctattagta tatcttatct tattttctac tctaatgaaa ccttcagaga
     2461 aaaaaataaa aaaatacttt tagaagaaaa aaataaaata gaaaaagcct taaaaattca
     2521 tttcaacgat ttagaagaat tatactaaaa tagcccaaaa aagggctata agttattctt
     2581 gttctttaag ttttaaattt tgctcaccat aaagccctgt tccaacagga atcattctac
     2641 ctaaaataac attttctttt aagtcttcta agtagtcaaa tttacccgcg atacttgctt
     2701 cggtaagtac ttttgttgtt tcttggaatg aagctgcaga aatcacacta tcactgccta
     2761 tcgctgctct tgtaacacct aaaagtacag gttcggcaat agctggttct ccgcccaatc
     2821 taagaattcg ctcattttct tc
//
LOCUS       DARAII010000183         2725 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.185, whole genome shotgun sequence.
ACCESSION   DARAII010000183 DARAII010000000
VERSION     DARAII010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2725
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.185"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..252
                     /locus_tag="SB143_001999"
     CDS             <1..252
                     /locus_tag="SB143_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEF9750488.1"
                     /translation="VINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVR
                     PNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE"
     gene            254..475
                     /locus_tag="SB143_002000"
     CDS             254..475
                     /locus_tag="SB143_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEF9750489.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAI
                     SLNDEIIFDENTKLKDSDKIALLPPVCGG"
     gene            476..922
                     /locus_tag="SB143_002001"
     CDS             476..922
                     /locus_tag="SB143_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEF9750490.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            926..2116
                     /locus_tag="SB143_002002"
     CDS             926..2116
                     /locus_tag="SB143_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEF9750491.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKALKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
     repeat_region   2230..2724
                     /inference="COORDINATES: alignment:crt:1.2"
                     /rpt_family="CRISPR"
                     /rpt_type=direct
                     /rpt_unit_range=2296..2328
                     /rpt_unit_seq="gttttagtccctttttaaatttctttatggtaa"
BASE COUNT          949 a          386 c          472 g          918 t
ORIGIN      
        1 gtgataaaca aatctcacat ggatcatcct ttccacatac acggcacgca atttgaactc
       61 atctcatcaa aactcaatgg caaagttcaa aaagccgaat ttagagcctt cagagatact
      121 ataaatgtgc gtcctaatga agagttaaga cttagaatga aacaagattt taaaggactt
      181 agaatgtatc attgccatat tttagaacat gaagatttag gaatgatggg aaatttagaa
      241 gtaaaggaat aaaatggtaa aagtggaatt tttaggccct ataaataaag aaaatttaga
      301 acttgaagta aaaaatttaa aagaattaaa agaaattttg caaaaagatg agagtttaaa
      361 agaatggcta gaactttgtg ccatatcttt aaatgatgaa atcatttttg atgaaaacac
      421 caagttaaaa gatagtgata aaatagcact tttaccgcca gtttgtggag gctaaatgaa
      481 acattttaca ctttatcaag gctctttaga tattcctaaa atttatagcc aatggtatga
      541 atttgccaag gataaaaact gcggtgcttt actgactttt tgtggtattg tgcgtgaaga
      601 aggaggtatt gaggcactta gttttgatat ttatgaatcg cttttaaaaa aatggtttga
      661 tgagtggcaa aaaagagtag attttgatgg tattagcttg ctttttgctc actctatagg
      721 cgatgtagcg atacatgaaa gctcgtattt tgcaggaatt ttaagcaaac aaagaaaatt
      781 aggacttaaa cttcttaatg aatttgttga agattttaaa gcaagtgcgc ccatttggaa
      841 gtatgatgtg ataaacaaag aaagaattta tgccaaagaa agatcaacca agctttgcgg
      901 tgcaggactt ttaaaaggat aaaaaatgct aatgtcttat gaagaaagtt taaaaatttt
      961 acattctcat atcaaaactt atgaaaagat tgaaaaaata gctcttacag agtgtttagg
     1021 acgcatttta gctcaagata taaaagccct taaaaatcag cctgaatttc caacctcggc
     1081 tatggatggt tatgcgatca aatttgaaga tcaagacaag cctttaaaaa ttttaggcct
     1141 cacacctgcg ggtactatgc cacaatttag cgtgcaaaat ggtacttgtg taaaaacctt
     1201 tacgggctca ctcatgagcg agggaagtga tactttagtc cctgttgaaa atgtacgcgt
     1261 agaaaatgat actcttttta tagaaaaaaa agttccccaa gcttttgccg tgcgtgcagt
     1321 aggagaaaac tataaaaaag atgaaatttt gctcaaaaaa ggcacaaggt taaattatag
     1381 cgagatagct cttttagctg aacttggatt ttttcacatt agtgtgttta taaagcctat
     1441 tgtaggggtt ttaagtagtg gaagtgagat caaagatcta ggagaagcct tggaaaatcc
     1501 tgctcaaatc cgctcttcaa atcatatcgc catagctaat ttagctaaaa atttaaattg
     1561 cgatacaagg gtttttcctc ttttaaaaga tgatgagaaa gccacttttt ccacccttga
     1621 aagtgctttg caaagttgtg atattttggt tacaacgggt ggggtttcta tgggagattt
     1681 tgacttttta aaaaaagcca tcaaagaata cgaaatcatc atcgataaag ccgacataaa
     1741 accaggtaga catatcaaaa tagctaaggc taatgaaaaa ttcatcatcg ccttaccagg
     1801 ttttccttac tcagccatgg tgatgtttaa tctttatgca agagagattt taaactcttg
     1861 gttacttcaa cctaaagact atatttgcaa agccttttta caaggaagtt acaagaaaaa
     1921 aacaccttat ttggaatttg tcgcttgcaa tatagagttt aaaaatggac gcattttagc
     1981 caatcttgaa ggcaaaaaag aaggctctag tgcgatcata aataatctta acaataaagc
     2041 tgctcttatg gtggtgccaa aagaatgtga aatgttagaa aatgaaagtt tagtagatat
     2101 tatctttatg ccttaaaatt atttaaataa ttttatttcg attttaatca accctaaatt
     2161 tcaataagtt tcaaattcgc aacctccttt tagtggagta attagcccta gcggagtttc
     2221 aatccactag ggttagtccc tttttaaatt tctttatggt aaaatgattt atattttgag
     2281 ttgtcaagag aaatcgtttt agtccctttt taaatttctt tatggtaaaa ttgggaaaaa
     2341 tcagatcaat ttatgataga tgttttagtc cctttttaaa tttctttatg gtaaaatcta
     2401 aagttagaaa ttgcatctat taaccatgtt ttagtccctt tttaaatttc tttatggtaa
     2461 aattatactc taaaggttct ccttcccaca cgtgttttag tcccttttta aatttcttta
     2521 tggtaaaatt ttttaaattt tatactctca tctattattg ttttagtccc tttttaaatt
     2581 tctttatggt aaaatatata atatttaaaa tttgctattg tttttgtttt agtccctttt
     2641 taaatttctt tatggtaaaa ttgattttta cgagttaaaa aatattatag agttttagtc
     2701 cctttttaaa tttctttatg gtaaa
//
LOCUS       DARAII010000184         2660 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.186, whole genome shotgun sequence.
ACCESSION   DARAII010000184 DARAII010000000
VERSION     DARAII010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2660
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.186"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            72..1874
                     /gene="edd"
                     /locus_tag="SB143_002003"
     CDS             72..1874
                     /gene="edd"
                     /locus_tag="SB143_002003"
                     /EC_number="4.2.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013022842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphogluconate dehydratase"
                     /protein_id="HEF9750492.1"
                     /translation="MAQKKLEQITKNIIERSKKTREAYLERIETYQGKIQRKDLGCAN
                     LAHAYASIPSHIKDRIKNNEGLNYAIISAYNDMLSAHQPFKNYPDIIKKEIFKHNAFA
                     QFAGGTPAMCDGITQGYEGMELSLFSRDVIAMSVAIALSHNVFDGAFYLGVCDKIVPG
                     LLIGALSFGHLPSIFVPSGPMTSGISNDEKSKIRQLFAEGKISRDKLLESEMKSYHDI
                     GTCTFYGTANSNQMMMEFMGLHLPNSAFINPNTTLREALVKEAASHMVKNKIKGIGEL
                     LSEKNIVNAIIGLMVTGGSTNHTIHLSAIARTAGIIINWDDFDAISNITPLLARVYPN
                     GKADVNQFEASGGIAFVIHQLLKEGLLHEDADTIMGKGLEAYTKNPFLIDDKIIYKDG
                     VRASKNENILRSIENPFSKDGGVRILRGNIGRAVIKISAVKEEHQVIKAPALVFHSQQ
                     EFLQSFQNGELEKDFIAVLPYQGPRASGMPELHKLTPPLGILQDRGFKVALVTDGRMS
                     GASGKVPAAIHMSPEALLGGSIAKIKNGDLLLLDAKNGTLEVLIDEKEWQERTVNQFK
                     SQELFGCGRELFAGFRTQSSSAETGAMSFGGYFS"
     gene            1886..2509
                     /locus_tag="SB143_002004"
     CDS             1886..2509
                     /locus_tag="SB143_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 4-hydroxy-2-oxoglutarate
                     aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase"
                     /protein_id="HEF9750493.1"
                     /translation="MQAKEVLEISKIIPVITIYDLKTSVNLAKALLDGGIKILEITLR
                     TNNAIEAIKLIANEVPQVIVGAGTILNFKMLEEVKNAGAKFAISPGLNSIFAKEAQNI
                     DITLIPGVATASEVMLALEFGYKNLKFFPAESAGGITMLKSLAAPFSGVKFCPTGGIN
                     LDNMQNYLNLNNVLCVGGSWLSPKELILEKQWSKITQITKQSLEKIS"
BASE COUNT          985 a          408 c          494 g          773 t
ORIGIN      
        1 agaattttta cttaaaatat agcataacta ttacaataat atcaaatttc attccaaaaa
       61 caaggaaaaa aatggcgcaa aagaagctgg agcaaatcac aaaaaatatc atagaacgca
      121 gtaaaaaaac aagagaagcc tatctagaac gcatagagac ttatcaaggt aaaattcaaa
      181 gaaaagattt aggttgtgcg aatttagctc acgcttatgc aagcattcct tcgcatatta
      241 aagatagaat taagaataac gaaggattaa actacgccat aatttcagcc tataatgata
      301 tgctatcagc tcaccagcct tttaaaaact acccagatat aatcaaaaaa gaaattttta
      361 aacataatgc ttttgcacaa tttgcaggag gcacacccgc tatgtgtgat ggtatcactc
      421 aaggctatga gggtatggag cttagtcttt tttcaaggga tgtgattgct atgagtgtag
      481 ccatagctct ttctcataat gtttttgatg gggcttttta tctgggtgtg tgtgataaaa
      541 ttgttcctgg tcttttaata ggagccttaa gttttgggca tttaccaagt atttttgtgc
      601 cttcaggacc tatgactagt ggaatttcta atgatgaaaa atccaaaatc agacaacttt
      661 ttgctgaagg taaaatttct cgtgataaat tactcgaaag cgaaatgaaa tcttaccacg
      721 acatcggcac ttgcaccttt tatggcacgg ctaattccaa tcaaatgatg atggaattta
      781 tgggtttgca tttgccaaat tctgctttta tcaatccaaa tactacccta agagaagctt
      841 tggtaaaaga agcggcttca catatggtaa aaaataaaat taaaggcata ggagaacttc
      901 ttagtgaaaa aaatattgtc aatgctataa taggacttat ggtaacggga ggttctacta
      961 atcatactat tcacttaagt gccattgcta ggacagcagg tattattata aattgggatg
     1021 attttgatgc tatttctaac atcactccac ttttagcaag agtttatcct aatggaaaag
     1081 ctgatgtaaa tcaatttgaa gcctcaggag gcatagcttt tgttattcac caacttttaa
     1141 aagagggatt attacacgaa gacgcagata ctattatggg caaaggttta gaagcttaca
     1201 ccaaaaatcc attcttaatt gacgataaaa ttatctataa agatggagta agagcaagca
     1261 aaaatgaaaa tatattaaga agtatagaaa atcctttttc taaagatggg ggagttagaa
     1321 ttttaagagg aaacataggc agagcagtaa ttaaaatttc agccgtaaaa gaagaacatc
     1381 aagtcataaa agctccagcc ttagtttttc actctcaaca agaattttta caaagctttc
     1441 aaaatgggga attagaaaaa gattttatcg ctgttttgcc ctatcaagga cctagagcaa
     1501 gtggtatgcc agaacttcac aaacttaccc cgcctttggg aattttacaa gatagaggtt
     1561 ttaaagtcgc tcttgttaca gatgggagaa tgtcaggagc ctcaggcaaa gttccagcgg
     1621 ctatacatat gagtccagaa gctttgcttg gaggtagtat agcaaaaatc aaaaatgggg
     1681 atttgctttt acttgatgca aaaaatggca ctcttgaagt tttaatcgat gaaaaagaat
     1741 ggcaagaaag aacagtcaat caatttaaaa gtcaagaact ttttggctgc ggtagagagc
     1801 tttttgcagg gtttagaacg caaagttcaa gtgcagaaac aggtgctatg agctttggtg
     1861 gatattttag ttaaaggaga aaaaaatgca agcaaaagaa gttttagaaa taagcaaaat
     1921 cattccagtc atcacaattt atgatttaaa aacaagcgtt aatttggcta aagctttact
     1981 ggatggaggt attaaaattt tagaaattac cctaagaaca aataatgcaa tcgaagcaat
     2041 caaacttata gcaaacgaag ttccgcaagt tatcgtaggt gcgggaacta ttttaaattt
     2101 caaaatgcta gaagaagtta aaaatgccgg agcgaaattc gccataagcc cgggtttaaa
     2161 ttctattttt gcaaaagaag ctcaaaatat agatataaca ctaattccgg gtgtagcaac
     2221 agctagcgaa gtaatgttgg cacttgaatt tggttataag aatttaaaat tttttccagc
     2281 agaatctgct ggcggaatca ctatgctaaa atctttagcc gcccctttta gcggtgtaaa
     2341 attttgtccc actggaggta tcaatttaga taatatgcaa aattacttaa atttaaacaa
     2401 tgttctttgt gtaggtggtt cgtggttaag tccaaaagaa ctaattttag aaaaacaatg
     2461 gagcaaaatc actcaaatta ccaagcaaag tttagaaaaa atttcataaa catctaaatt
     2521 gctataaaaa accatatcaa agtataaaca tatggtttcg tcatcttaat tataagacac
     2581 agctattttg aaggcaaact gaataataga ttaaaaacaa aaaagaattt attaaagtat
     2641 aaagaaataa gactagcact
//
LOCUS       DARAII010000185         2552 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.187, whole genome shotgun sequence.
ACCESSION   DARAII010000185 DARAII010000000
VERSION     DARAII010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.187"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..512)
                     /gene="queC"
                     /locus_tag="SB143_002005"
     CDS             complement(<1..512)
                     /gene="queC"
                     /locus_tag="SB143_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEF9750494.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYKQRTQEKE
                     KECFKQICKALNVEKSYIFDVSFIANIGGNALTDQSIHIPKNELSVSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTEKFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKA"
     gene            935..2161
                     /locus_tag="SB143_002006"
     CDS             935..2161
                     /locus_tag="SB143_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEF9750495.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRAIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNTYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VDEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACNKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHTIINDYEMK
                     LINDRILPFVPENLRAEFSYILGIREGRSNEASFVKNEFENRTYKNAKIELCSGSLSS
                     FNQNEFGAIDGKALKYCDKIAAFIEAGLSISYGVKSKELENGFEDMFRFFNESPTIDG
                     VNFLEICREFRDYFKI"
     gene            complement(2208..>2552)
                     /locus_tag="SB143_002007"
     CDS             complement(2208..>2552)
                     /locus_tag="SB143_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEF9750496.1"
                     /translation="QEMLSPTSLIMGMGLGADVALITDGRFSGATRGLSIGHVSPEAA
                     EGGLIGLLKDGDEIEIDVDAYIINANLSDEEIAKRKNDFVMPQKEVKSRWLRMYQKLV
                     TNASKGAVLDME"
BASE COUNT          877 a          428 c          394 g          853 t
ORIGIN      
        1 gctttgttta gtctaacaag cggagttttt atacaaactt tgaaattctt actcgtacct
       61 tcattgataa attcttgtgc tttttgtata aatttttcag tacaatcagg ataaccacta
      121 ccatcttctt ctactacgcc tataaaaata ctttcacaat tttccttttc agccaaagat
      181 cctgctatac ttaaaaaaat tccattgcga aaaggcacat aagtaatggg cggagtatcg
      241 cttacactta gctcattttt agggatatga atgctttgat ccgttagggc attgcctcct
      301 atatttgcta taaagctcac atcaaaaata taagattttt ccacatttaa agccttgcaa
      361 atttgcttaa aacactcttt ttctttttct tgtgtgcgtt gtttataatc aaaatgcaaa
      421 gcaatgatct catatccttc ttttttagcc aaataagcac ataaagtgct atccattcca
      481 ccgctgatga tacaaagtgc ttttttactc atttttatcc ttaaaattgc tatttttgca
      541 attctagcaa atatttttta aaatttatac ttaaaataaa gccccatttt aacgctatgt
      601 aataatatgc atgaatctat gttttatttt atttgactta agtttcaatt agtgctatga
      661 taataatatt taaaaaaggg ctggggagca ccaaatcatt aatttctatt tttatggagg
      721 attttaggat ttgcgaagta tttcaaaaaa tactcaattt aaactcaagc tgatccaatc
      781 ttaaaatttt atccataaaa gtagattcta aaaaacacta aaaaccatac taatgatcca
      841 aatttcatat aaatttaata tcttgcttta aattttattt attattttaa aaaataaaat
      901 gataaaattt gaaaaaaatt aaaaggcaat ttaaatgata aatataaaac ttatagagca
      961 tattttcaaa gcagcttcta tcagtcgttg gaatgattat ccaagaatgg caaatttagt
     1021 cgagcttgac aaacaagcgc ataaattcat catagcttat ttcattgcaa aaatggaaaa
     1081 agatgtggat atgagagcta ttatagaagg tggaattttt gaatttttaa gccgcgttgt
     1141 agttactgat atacgccctg atgtgtatca tgaaatcgtg cgtcaaaaaa aagcagaggt
     1201 gaatgcttgg gttttaagta aaatcgaacc catgatagaa gatatagaag atggagagtt
     1261 tttaaagcgt tttgaagcat atctaaatgg caatacctat gccaaagaaa gacttatctt
     1321 aaaagctgca tcctactttg ctacaagatg ggaatttaac atagtttatc aaacctcagc
     1381 ttttttaaat gatatcgatg agatcaaaaa taaagtcgat gaagaattgg aagattatta
     1441 tgaactcata ggagctagaa aaatcgctct taatcaaaaa atcgcaaaaa tcatcgattt
     1501 aagcgggaga cttcgttttc aaaagcgttg ggctcaaacc ccacgcatac ctgaaactgc
     1561 tgttttagga catatgcttg tagtggcgat tttaggatat ttttattcac ttaaaatcaa
     1621 agcttgcaat aaaagacttg aaaacaattt ttattgcgct ttatttcatg atctacctga
     1681 atctttaaca cgcgatatca taagccctgt aaaatacggc atagacggac ttcacactat
     1741 catcaatgat tatgaaatga aactgatcaa tgacagaatt ttacccttcg tgcctgaaaa
     1801 tttaagggct gagttttctt atatcttagg cattagagag ggcagaagca atgaagcaag
     1861 ttttgttaaa aatgaatttg aaaatcgcac ctataaaaat gccaaaatcg agctttgtag
     1921 tggaagctta agttctttta atcaaaacga atttggagca attgatggca aggctttaaa
     1981 atactgcgat aaaatcgctg cttttatcga agcagggctt agcataagct atggagtaaa
     2041 gtctaaagaa cttgaaaacg gttttgaaga tatgtttaga tttttcaacg aaagccctac
     2101 aatcgatgga gtaaatttcc tcgaaatttg tagagaattt agggattatt ttaaaattta
     2161 atcttatttt gattataaac tccaagaacg gaatgaaaga aactctttca ttccatatct
     2221 aaaaccgcac ccttgctagc atttgttaca agtttttgat acattctaag ccatctggat
     2281 tttacttctt tttgaggcat tacaaagtca tttttgcgtt ttgcgatttc ttcatcgctt
     2341 aaatttgcat tgatgatata agcatctaca tcgatttcta tctcatcacc atcttttaaa
     2401 agccctataa gtccaccctc agcagcttca ggagaaacat gacctatgct taaacccctt
     2461 gttgcaccgc taaatcttcc atcggtaatc aaagccacat ctgcaccaag ccccataccc
     2521 atgataagtg aagttggact taacatctct tg
//
LOCUS       DARAII010000186         2512 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.189, whole genome shotgun sequence.
ACCESSION   DARAII010000186 DARAII010000000
VERSION     DARAII010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2512
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.189"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1754
                     /locus_tag="SB143_002008"
     CDS             <1..1754
                     /locus_tag="SB143_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEF9750497.1"
                     /translation="KRQSVANGFYDNGFGGSESGYLPPASMIERIEVIRGPASTLYGS
                     DAVGGVINIITKKNPNKTEANIEFSTLLQQHSSKYGNAGGFNAYVATPLIEDTLSISA
                     RIKYYDKAVSDLKWPTPVWSNGTQRPENYQIASHSPGYFTSLGFGSRLNWTVDDSNNV
                     YLDVERYINEISVNSTSSSAIKSERQLFKDNVVLNHDGNYEFGTTNSYLQYGSTKDKD
                     LHSQIWVGEGKVVLPWNLDKYGNLVSTFGTRIDYETLKNDQESAGSEIRGKNLDQTTV
                     ALYGEGEYFISDDLIFTTGLRYIYSDLFDSEVTPRVYLVYHLNDNVAFKGGVAMGYKT
                     PAAKQLTNGYYNYSNNGASFGNPDLKPEESTNYELGVDFRIFDFAHYSITGFITDFKN
                     QISSEELTGMYNGIDCANGVTCERSINLGKTQTRGIELAFNTKPYKGFSVNSSYTFMD
                     NRYKDGQTNWFGGDRIENLPRHIAMLKLNYEQGKFSSYVKARARLDTIARSKGGGSGT
                     LPWQKYKPFYIVDLGVNYKIDKQSSLSFTVQNLFDKDFFDPQVTRWDGANPGGYANRY
                     QDYTEGRSFWLSYKYDF"
     gene            1831..2424
                     /locus_tag="SB143_002009"
     CDS             1831..2424
                     /locus_tag="SB143_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEF9750498.1"
                     /translation="MIFKNLKELPFCESNYIKPKRFSYESNGKFCTWDFIESKDSVSI
                     LLYHKELKSFIFVRQFRIPLWYHQKQDKNYHKDENMGYTIELCSGLVDKDLPLEQIAK
                     EECIEELGYAPKEFEKVGDFYTGFGSGVSKQSFYFAIVDENDKICDGGGVDDEQIEAV
                     FVKINEYEEFSKKIIHTPLLDFAYLWFLKEKKELCLK"
BASE COUNT          881 a          316 c          504 g          811 t
ORIGIN      
        1 gaaagcgtca aagcgttgct aatggttttt atgataatgg ttttggcggt agcgaatcag
       61 gatatttacc acccgcatct atgatagagc gtatcgaggt gatacgcgga cctgcttcta
      121 cactttatgg tagcgatgca gtaggtgggg taataaatat cattactaaa aaaaatccca
      181 ataaaaccga agcgaatata gaatttagca cccttttaca gcagcattct agtaaatatg
      241 gaaatgcggg tggttttaat gcttatgtgg ctacaccttt gattgaagat acgctttcaa
      301 tttctgctag gattaagtat tatgataagg cagtttctga tttaaaatgg cctacgccag
      361 tttggagtaa tggtactcaa agacctgaaa attatcaaat cgcaagtcat agtcctggat
      421 attttacgag tttaggtttt ggatcaagac tgaattggac tgtagatgat agcaataatg
      481 tttatttaga tgttgagcgt tatatcaatg aaatttcagt aaattccaca agtagtagtg
      541 ctattaaaag cgaaaggcaa ttgtttaaag acaatgtcgt tttaaatcat gatggaaatt
      601 atgaatttgg aactacaaat tcatacttac agtatggtag tactaaagat aaagatctgc
      661 atagtcaaat ttgggtagga gaaggaaagg ttgtcttgcc ttggaatttg gataaatatg
      721 gaaatttagt aagtaccttt ggaacaagaa tagactatga gacactcaaa aacgatcaag
      781 aaagtgcagg tagcgaaata aggggtaaaa atcttgatca aactacggtt gcactttatg
      841 gcgagggtga atattttatc agtgatgatt tgatttttac tacaggcttg cgttatattt
      901 atagtgattt gtttgattct gaagtaactc ctagagtata tcttgtttat catttaaatg
      961 ataatgttgc ttttaaagga ggtgtagcta tgggttataa aactccagca gcaaaacaac
     1021 tcaccaatgg ttattataat tatagcaata atggtgcttc ttttggaaat cctgatttaa
     1081 aacctgaaga aagtacaaat tatgagctag gagttgattt tagaatattt gattttgctc
     1141 attattctat tacaggattt attactgatt ttaaaaatca aatcagtagc gaagagttaa
     1201 caggaatgta caatggtatt gattgtgcca atggtgttac atgcgaacgt tctatcaatc
     1261 ttggtaaaac acaaactagg ggtatagaat tggctttcaa tacaaaacct tataagggtt
     1321 ttagtgttaa ttcaagttat acttttatgg ataatcgcta caaggatgga cagacaaatt
     1381 ggtttggtgg agatagaata gaaaatttac caagacatat tgctatgtta aaattaaatt
     1441 acgagcaagg aaaatttagc tcttatgtta aagcgcgtgc aagacttgat actatagcca
     1501 gatcaaaagg tggtggcagt ggcactttgc catggcaaaa atataagcct ttttatatag
     1561 tggatttggg agtaaattat aaaatcgata aacaatcaag tttgagcttt acagtgcaaa
     1621 atctttttga taaagatttc tttgatccgc aagttacaag atgggatggt gctaatccag
     1681 gaggttatgc aaatcgctat caagattata cagaaggaag aagtttttgg ttaagttata
     1741 aatatgattt ttaaattgaa aaaaaagagt gtcttaactt aaaacaagta aaaacaaagt
     1801 ataatgaaga aaaaataaag gctttgtttt atgatattta aaaatttaaa agagcttcct
     1861 ttttgcgagt ctaattatat caaacccaaa agatttagtt atgagagcaa tggaaagttt
     1921 tgtacttggg attttataga atccaaagat agcgtttcaa ttcttttata tcataaagaa
     1981 ttgaaaagct ttatttttgt tcgtcaattt cgcataccgc tttggtatca tcaaaagcaa
     2041 gataaaaact atcataaaga tgaaaatatg ggctatacca tagaactttg ttcagggctt
     2101 gtagataaag atttaccctt agagcaaata gccaaagaag aatgcatcga agaattaggc
     2161 tatgccccta aagaatttga aaaagtaggc gacttttata caggttttgg ttcgggggtt
     2221 agtaagcaaa gtttttattt tgcaattgta gatgagaatg acaaaatttg tgatggtggc
     2281 ggggttgatg acgagcaaat agaggctgtt tttgtaaaga tcaatgaata tgaagaattt
     2341 tctaaaaaga taatccatac acctttgctt gattttgctt atttgtggtt tttaaaagaa
     2401 aagaaagaac tttgccttaa ataaataagg caaagaattt tggattaatt tgcttcatta
     2461 agcatttctt taaatacatc aaataaatgc aaagacgcat tttcagcatt ct
//
LOCUS       DARAII010000187         2507 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.190, whole genome shotgun sequence.
ACCESSION   DARAII010000187 DARAII010000000
VERSION     DARAII010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2507
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.190"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..948
                     /locus_tag="SB143_002010"
     CDS             <1..948
                     /locus_tag="SB143_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEF9750499.1"
                     /translation="DDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKIPEGSRTAKGK
                     AVVNLINLQADEKIMAIIPTTDFDENKSLCFFTKNGIVKRTNLSEYQNIRSVGVKAIN
                     LDENDELVTAIIVQRDENEETGLLDDDSLNDENTNSDENLIESIKGKMLFAVTKKGMC
                     IKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEILSISAKGIGKRTNAG
                     EYRLQSRGGKGVICMKLTDKTKELISVVIVDESMDLMALTSSGKMIRVDMQSIRKAGR
                     NTSGVIVVNVENDEVVSIAKCPKEELEDEISDENLDLNL"
     gene            1016..1537
                     /gene="flgP"
                     /locus_tag="SB143_002011"
     CDS             1016..1537
                     /gene="flgP"
                     /locus_tag="SB143_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEF9750500.1"
                     /translation="MKKFYFMLIIAGIFAGCTASTNSTTAKNPNSPSTSAQASDIVVQ
                     KVDKDDVRDIIREEKMLAPDVSESELSFSAVGEGIAPLNTVSSAQALALAKRAAITDA
                     YRQLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNVEL
                     KIDADKWKELFAY"
     gene            1513..1962
                     /locus_tag="SB143_002012"
     CDS             1513..1962
                     /locus_tag="SB143_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750501.1"
                     /translation="MERIVCLLIFFSFKLIAQDEFIFWAELSNKNLILFHQSQNLSPA
                     MTRSENTISEFACEISYTDDDLKKLPRTELGMIDDDMSKAIKFDFLNAHKDELSDCFM
                     GARISVKDIVKTDLLKAQNETYVKILPLRFSVEFGERNALIYYLKKK"
     gene            2011..>2507
                     /locus_tag="SB143_002013"
     CDS             2011..>2507
                     /locus_tag="SB143_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent Fis family transcriptional
                     regulator"
                     /protein_id="HEF9750502.1"
                     /translation="MNLVIVEDDINMRKSLEIALGEYEEFQIKSYKSATEALKKIDSD
                     TDLIITDINMPGIDGLEFIKACENKYDFIIMTGNATLNRAIEAVRLGVKDFLTKPFDI
                     ETLVEAIKRAKVIREKTADKKIKKQEEKQENGFFSSSDKLEQVLSLSQKAAKTDASVM
                     LFGESG"
BASE COUNT          922 a          296 c          506 g          783 t
ORIGIN      
        1 gatgatgatt ttatcgaaag tttctttact gctaatactc atgatacatt aatgtttgtt
       61 actgatagag gacagcttta ttggttgaaa gtttataaga tacctgaagg ctcaagaaca
      121 gctaaaggaa aagcggttgt taatttgatt aatttacaag ctgatgaaaa aatcatggct
      181 atcattccga ctactgattt tgatgaaaac aaatccttat gtttctttac taaaaatggt
      241 atagtaaaac gcaccaattt aagtgaatat caaaatatca gaagtgtggg tgtaaaagcg
      301 attaacttag atgaaaatga tgaattagtt actgctatta tcgttcaaag agatgagaat
      361 gaagaaacag gacttttaga tgatgacagt cttaatgatg aaaatacaaa ctctgatgaa
      421 aatttaattg aatccattaa gggtaaaatg ctctttgcag tgactaaaaa gggtatgtgt
      481 attaaatttc ctcttgcaaa agtgcgtgag attggtcgcg taagtcgtgg ggtaacagct
      541 attaagttta aagagaaaaa tgacgaatta gtaggtgctg ttgttataga aaatgatgag
      601 caagagattt taagtatcag cgctaagggt ataggaaagc gaacaaatgc gggagaatat
      661 agacttcaaa gcagaggcgg aaaaggtgtt atttgtatga agttaaccga taaaaccaaa
      721 gagcttatta gcgttgtaat tgtagatgaa agtatggatt taatggcact aacaagcagt
      781 ggtaaaatga tacgcgttga tatgcaaagc attagaaaag cggggcgtaa taccagtggt
      841 gttattgtgg ttaatgttga aaatgacgag gtggttagca tcgctaaatg tcctaaagaa
      901 gagcttgagg atgaaataag cgatgaaaac ttagatttaa atttataata gttatttgag
      961 ttggaacgct ttttgctttt ttatcaaata attacaatat tttgaaggtg taaatatgaa
     1021 aaaattttat tttatgctaa taatagcagg aatttttgca gggtgtacag cgagtacaaa
     1081 cagtactaca gctaaaaatc caaatagtcc aagtacttca gctcaagcat cggatattgt
     1141 tgttcaaaaa gtggataaag acgatgttcg tgatattatt agagaagaaa aaatgctagc
     1201 tcctgatgta agcgaaagtg agcttagttt tagtgctgta ggagaaggaa ttgctcctct
     1261 taatactgtt tcaagtgctc aagctttagc attagcaaaa agagccgcaa ttacagatgc
     1321 ttatagacag cttgcaagta agctttatgg cgttaaagtt aatggtaaag atactgtaaa
     1381 agatgcaatg cttagaagct caaccatcac tgcacaagta aatggtttaa ttaaaaatgc
     1441 tagcataatt gatgagaatt ttaatcaagg cctttacaga gttaatgtag aacttaagat
     1501 tgatgcggac aagtggaaag aattgtttgc ttattaatat tttttagttt taaactaatt
     1561 gcccaagatg aatttatatt ttgggcagaa ctttctaaca aaaatttaat cctttttcat
     1621 caaagtcaaa atttatcccc tgcaatgacg cgtagtgaaa atactataag tgaatttgct
     1681 tgcgaaattt cttatactga tgatgattta aaaaaacttc caagaacaga attgggtatg
     1741 atagatgatg atatgtctaa ggctattaaa tttgattttt taaatgccca taaagatgaa
     1801 ttaagtgatt gttttatggg tgctagaatt tctgtaaaag atatagtcaa aacagacttg
     1861 ttaaaagcac aaaatgaaac ctatgttaaa attttacctt tgcgttttag tgtagaattt
     1921 ggagaaagaa atgctttgat ttactatctt aaaaaaaagt aaatttaagc cgtattttgc
     1981 tattatttgc taaaaaatca aaggctagtt atgaatttgg tgattgttga agatgatatc
     2041 aatatgcgaa aatcccttga aatagctctt ggggaatatg aagaatttca aataaaatct
     2101 tacaaatcag ccacagaagc tttaaaaaaa attgattcag atacagattt gattattaca
     2161 gatattaata tgcctggaat tgatggacta gaatttatta aggcttgtga aaataaatat
     2221 gattttatca ttatgacagg aaatgcaact ttaaatcgcg ccatagaagc ggtacgctta
     2281 ggtgtgaagg attttttaac taaacctttt gatatagaaa ctttggttga ggctatcaag
     2341 cgtgcaaaag ttattcgaga aaaaactgcg gataaaaaaa taaaaaagca agaagaaaaa
     2401 caagaaaatg gttttttctc gagttctgat aaattagaac aagttttaag cttgagtcaa
     2461 aaggctgcta aaacagatgc atcagttatg ctttttggtg agagtgg
//
LOCUS       DARAII010000188         2483 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.191, whole genome shotgun sequence.
ACCESSION   DARAII010000188 DARAII010000000
VERSION     DARAII010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2483)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.191"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            146..364
                     /locus_tag="SB143_002014"
     CDS             146..364
                     /locus_tag="SB143_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEF9750503.1"
                     /translation="MLLNIIIEKDQDGYFARILEFEGCVSQGNTYEEALVNIKEAGEL
                     YLESLANEEKRIIENKTTSIIPMVLANA"
     gene            357..560
                     /locus_tag="SB143_002015"
     CDS             357..560
                     /locus_tag="SB143_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HEF9750504.1"
                     /translation="MPELPRMTAKEAEKLLLQNDFSIDRQKGSHRIYKKGLYRMVIPH
                     HSGEILHPKIIKQLFEIIEVAKD"
     gene            564..2357
                     /locus_tag="SB143_002016"
     CDS             564..2357
                     /locus_tag="SB143_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002835057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9750505.1"
                     /translation="MPKRNTIETITLGLFSDEDVSIICEDTIKLERGSVAVLSGNSEV
                     GKSFLALKVCANAINDGLKPFFWSVEDKNKAILERIKNIESFYSFNTAELEFSNELPK
                     INKEPINCLKEELNELADCDLIVLDTFSAFFSTLGFKDQNNQNDVQNFFNILTDIAKS
                     NNQAILLLHHLDKKGESLMGSSVIINAPRLVYKLSFEKGEDKNSTTYRLLEVLKDNNN
                     INAGEFQKTIKVLQNSSIDEPSIVNLRANSIDSNTLEIINKKDISAVSVNELAKGYVT
                     MNENRGVFYLSSRKLTDTNFYKVFKENDNKIDFKMTGANGSSYAISLKNSLLTQTHRN
                     ILDALFLYIKKNVDTSVIKKYQENFWDMEVRLEPYKFLKQYLNKNSNNYSWLKQKFTE
                     ISRFAYDLAFTQNVEDKDKKTITQRDKGILMFDSVERITKENGTIVSVFVLTVRREYI
                     KKLETESTLSYDDDLSKILINLNSLVAQDLIRFLTSFPDKKILSYSEFCEIKAYKFYK
                     ENSIISRQKKEIIKLKDKLIEFGINIYGKGVEFADYDDEFFHNKYKNENDLFFIYQSN
                     NKVKRYIKRDDPMNQLNTKDNRFLLQKSLFD"
BASE COUNT          971 a          288 c          383 g          841 t
ORIGIN      
        1 ttacatttaa gtcaatctta tttgaaaaaa ttctaaaatt gctgcctatt gacatagatg
       61 tgatactttg atataattta tttcgaagat taaaatattt gttacattta agtcaatctt
      121 atcatctttt aatagaagga atcagatgct attaaatatt attattgaaa aagatcagga
      181 tggatatttt gcacgcattt tagagtttga aggttgtgtt tctcaaggaa atacttatga
      241 agaagcttta gtcaatataa aagaagctgg agagctttat ttagaaagtc ttgcaaatga
      301 agagaaaagg attattgaaa ataaaacgac ttcaattatt ccaatggttt tagcaaatgc
      361 ctgaattgcc aagaatgact gcaaaagaag cggaaaagct tttattgcaa aatgattttt
      421 cgattgatag gcaaaaaggc agccatagaa tctataaaaa aggactttat agaatggtta
      481 ttcctcacca tagtggagaa atattgcacc ctaaaatcat aaaacaacta tttgagatca
      541 tagaagtagc aaaggattaa aaaatgccaa aaagaaatac tattgaaact attacactcg
      601 gactttttag cgatgaagat gtttctataa tctgcgaaga tacgattaaa ttagaaaggg
      661 gctctgtagc tgtattaagt ggcaatagtg aagtaggcaa gtctttttta gctttaaagg
      721 tatgtgctaa tgctattaat gatggcttaa aacctttttt ttggagcgta gaagataaaa
      781 ataaagcgat tttagaacgc ataaaaaata ttgaaagttt ttattctttt aatactgcgg
      841 aacttgaatt ttcaaatgaa cttccaaaaa tcaataaaga acctataaat tgtttaaaag
      901 aagagcttaa tgagttagca gattgtgatt taattgttct tgataccttt agtgcatttt
      961 tctcaacatt aggttttaaa gatcaaaaca atcaaaacga tgtgcaaaat ttctttaata
     1021 ttctaacaga tatagcaaaa tcaaataatc aagctatctt attacttcat cacttagaca
     1081 aaaaaggcga aagtcttatg ggtagctctg ttattatcaa tgctcctaga cttgtttata
     1141 aactttcgtt cgaaaaggga gaagataaaa attctaccac ctatcgcttg cttgaggtgc
     1201 taaaggataa taataatatc aatgctggag aatttcaaaa aacgattaaa gtattgcaaa
     1261 attctagtat tgatgagcct tcaattgtaa atcttagagc taacagcatt gattctaata
     1321 ctttggagat tatcaataaa aaagatattt ctgctgtaag tgttaatgaa ttagcaaaag
     1381 gctatgtaac aatgaatgaa aatagaggtg ttttttattt aagctcacga aagcttacag
     1441 acactaattt ttataaagta tttaaagaaa atgataataa aatagatttt aaaatgacag
     1501 gtgcgaatgg ctcatcatat gccataagtt taaagaactc tttgcttacg caaactcata
     1561 ggaatatttt agatgcttta tttttatata tcaaaaaaaa tgtggataca agtgttatta
     1621 aaaaatatca agaaaatttt tgggatatgg aagtaagatt agagccctat aaattcttaa
     1681 aacaatatct taataaaaat tctaataatt attcttggtt aaaacaaaaa tttacagaaa
     1741 tctctcgttt tgcatatgat ttggctttca ctcaaaatgt agaagataaa gataaaaaaa
     1801 caatcactca aagagataaa ggcattttaa tgtttgactc tgtagagcgt atcacaaaag
     1861 aaaatggaac aattgtatct gtattcgtgc taacagttcg tagggaatat attaaaaaac
     1921 tcgaaacaga atccactctt tcttatgatg atgatttatc aaaaattctt attaatttaa
     1981 attctttggt ggcacaagat ttgattagat ttttaacaag ttttcctgat aagaaaattc
     2041 ttagttatag tgagttttgc gagattaagg catataaatt ttataaagag aattctatca
     2101 tttcaagaca aaaaaaagaa atcattaaat taaaagacaa acttatagag tttggtatca
     2161 atatctatgg caaaggcgta gaatttgctg attatgatga tgaatttttt cataataagt
     2221 ataaaaatga aaatgattta tttttcatct atcaaagcaa taataaggta aaaagatata
     2281 ttaagcgtga tgatccaatg aatcaactaa acaccaaaga caatagattt cttttacaaa
     2341 agtctttatt tgattgatgg ttgatggtat ataattttaa aatattaaac ttaattttat
     2401 ataattaaaa tatgcttttt tacatttgat taaatgttcg ttaaatttta ttacaaaatt
     2461 ttttatattt ttcttaaata aaa
//
LOCUS       DARAII010000189         2454 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.192, whole genome shotgun sequence.
ACCESSION   DARAII010000189 DARAII010000000
VERSION     DARAII010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2454)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2454)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2454
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.192"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..327)
                     /locus_tag="SB143_002017"
     CDS             complement(<1..327)
                     /locus_tag="SB143_002017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEF9750506.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKNVKMDGF
                     RPGKVPVAAVLKRYQKELTQDAEQNLFKSAVDSALKELKKEAKELVGEPYFEKFDRKD
                     GEIVAEL"
     gene            418..1020
                     /gene="folE"
                     /locus_tag="SB143_002018"
     CDS             418..1020
                     /gene="folE"
                     /locus_tag="SB143_002018"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002850772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEF9750507.1"
                     /translation="MSQEKNTENNLQEKFENCVKTMLEIMGENPTREGLVKTPNRVFK
                     AYEFLTSGYKKNVKEILNNALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRVHVAYIP
                     DQKVVGLSKIPRLVEVYARRLQIQEQLTEQIAEALMENVGAKGVGVVIEARHMCVEMR
                     GVQKANSTTTTSALRGLFLKNEKTREEFFSLINSPKQVRF"
     gene            1020..2405
                     /gene="fliI"
                     /locus_tag="SB143_002019"
     CDS             1020..2405
                     /gene="fliI"
                     /locus_tag="SB143_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEF9750508.1"
                     /translation="MNLEKLRSKLGKENLSAVFGEITKISATSIEIRGLKTGVGDIIK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMGDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAIAKKEFMQKFLGQNPEESFEFEETIRLLSQIDANVAPSAVQQNINMGS
                     SNATLPNPNLK"
BASE COUNT          819 a          376 c          474 g          785 t
ORIGIN      
        1 taattcagca acaatttctc catctttacg atcaaatttt tcaaaatatg gctcacctac
       61 aagttctttt gcttcttttt ttaattcttt taaagcgcta tcaacagcag atttaaaaag
      121 attttgttcc gcatcttgag tcaattcttt ttgatatctt ttaagtacag cagcaacagg
      181 aacttttcct ggtctaaagc cgtccatttt tacattttta gaagcttttt tagctaaatt
      241 ttctacttcg cttttaatca tccctgaagg aatttttaca ctagcagtcg cattaacaga
      301 gtctaattgc tttgctttta cttccataac atttttcctt ataaaataaa atttgcttta
      361 atcatagcaa atttttcctt attagttgca taaaatttta aagcatttta tgttaaaatg
      421 agccaagaaa aaaatacgga gaataatttg caagaaaaat ttgaaaattg cgtaaaaact
      481 atgcttgaaa ttatggggga aaatccaact agagaaggac tcgtaaagac gcctaatcgt
      541 gtttttaaag cttatgagtt tttaacaagt ggatataaaa aaaatgtcaa ggaaatacta
      601 aataatgctt tatttgaaag ctcaaataac gaaatggttc tagtgcgtga tatagaattt
      661 tacagtcttt gcgagcacca tcttttacct ttttttggcc gcgtgcatgt ggcttatatc
      721 cctgaccaaa aagtggttgg gcttagcaaa attccacgtc ttgtagaagt atatgcgaga
      781 agacttcaaa ttcaagaaca acttaccgaa caaattgctg aagctttgat ggaaaatgtt
      841 ggtgcaaaag gtgttggtgt ggttatagaa gcaagacata tgtgtgtaga aatgcgtggg
      901 gtacaaaaag caaattctac tactaccact tcggctcttc gtggactttt tttaaaaaat
      961 gaaaaaacac gcgaagaatt tttttcactc attaattctc ctaagcaagt tcgtttttaa
     1021 tgaatttaga aaaacttcgt tctaagcttg gcaaagaaaa tttaagtgct gtttttggag
     1081 agatcactaa aatttctgct acaagtatag aaattcgagg acttaaaacg ggtgtgggtg
     1141 acatcattaa acttgtttca aatgaaaatg aaaatttaaa caccttagct atggttgttg
     1201 aaattaaaga gcaatttagc tatctaagtc ctttttcttt catagaaggt tttaaaatag
     1261 gcgaccgcgc ttttataagt gatgcaggaa tgcaaatagg cgttagtgat gagcttttag
     1321 gaagagtggt ggatcctttt atgcgcccta aagatggcaa gggtgctata gaggcgacta
     1381 aatatatgcc tatcatgcgt gcacctattg atgcgatgaa aagaggactt atagaagagg
     1441 tttttcctgt gggagttaaa accatagacg cgcttttaac ttgtggcgtg gggcaaaaat
     1501 taggcatttt tgcaggaagt ggcgtaggaa aatctactct tatgggtatg atagttaaaa
     1561 attcaaaagc tcctattaaa gtcgtcgcac ttataggcga aagagggcgc gaaattcctg
     1621 aatttataca aaaaaattta ggtggaaagc ttgatgatac ggtaattatc gttgcaacaa
     1681 gtgatgatag tgctttaatg cgaaaatatg gagcattttg cgctatgagc gtggccgaat
     1741 attttaaaga acaaggcaaa gatgtacttt ttatcatgga tagcgtaacg cggtttgcca
     1801 tggcacaaag agagatagga cttgcccttg gcgaacctcc tactacaaaa ggctatcctc
     1861 caagtgtttt aagtcttttg cctcaactta tggaaagaac aggaaaagaa gaaggtaaag
     1921 gaactataac agcatttttt accgttttgg ttgatggaga tgatatgagt gatcctatcg
     1981 ccgatcaaag tcgttctatc ttagatgggc atattgtttt aagtcgtgag cttacggatt
     2041 ttggaattta tcctcctatt aatatacaaa attcagcctc aagggtaatg ggcgatatca
     2101 taagtcctga acacaaactt tgggctagaa aatttaaacg cttaaattcg cttttgaaag
     2161 aaaatgaagt attacttcgt atcggtgctt atcaaaaggg tagtgataag gagcttgatg
     2221 aagctatagc taaaaaggaa tttatgcaaa aatttttagg acaaaatccc gaagaaagct
     2281 ttgaatttga agaaactata agacttttaa gtcaaattga tgctaatgtt gcccctagtg
     2341 cagtgcagca aaatatcaat atgggaagtt ctaacgcaac actacctaat cctaatctta
     2401 aataatcttt ttttgtatta aaaataattt caataaatat agaaatgtaa attt
//
LOCUS       DARAII010000190         2435 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.193, whole genome shotgun sequence.
ACCESSION   DARAII010000190 DARAII010000000
VERSION     DARAII010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.193"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..810
                     /locus_tag="SB143_002020"
     CDS             <1..810
                     /locus_tag="SB143_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEF9750509.1"
                     /translation="LFLEKMGVEIDFLKADASDVEEKIKPNTKLILCESPGSILYEII
                     DLPKLCKIAHSHNIPVAIDNTYSSGYFLNPLELGVDISVIAATKYLSGHSDVTMGVVV
                     INEKEWKNFDKLPEALGFTTSPDDAYLVLRGMRTLDVRMKAHEKSADEIVEFLQTRKE
                     IKTIFYPKLKTHPNHEIFMRDHKGANGMVTIEFAEGYSKEDAIKFVDELEYFSIGASW
                     GGYESLATVTTPPRTATDWSKRGPFVRFHIGLEDTKDLIADLAKAFDSIKK"
     gene            820..2187
                     /locus_tag="SB143_002021"
     CDS             820..2187
                     /locus_tag="SB143_002021"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEF9750510.1"
                     /translation="MTGISVFDHKLLADSWSTQDMRAVFCEENRVQKWLDVEAALAKA
                     QAKLNIIPQEAADEIAKKAYYKFMDMDFIFNEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALVKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQSARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLEKIKN
                     SAILK"
     gene            2196..>2435
                     /locus_tag="SB143_002022"
     CDS             2196..>2435
                     /locus_tag="SB143_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HEF9750511.1"
                     /translation="MLYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTEKNTLIWVNDQKLDPIYAAML"
BASE COUNT          893 a          349 c          460 g          733 t
ORIGIN      
        1 ttatttttag aaaaaatggg tgttgagatt gattttttaa aagccgatgc aagtgatgta
       61 gaagaaaaaa tcaagcctaa taccaaactc atcctatgcg aaagccctgg ttctatactt
      121 tatgaaatca tagatttgcc aaagctttgc aaaattgcac actctcataa tattcctgta
      181 gctattgata atacttattc aagcggatac ttcctaaatc cacttgagct aggcgtagat
      241 atttcggtta tagctgcgac aaaatatctt agcggtcact ctgatgttac catgggtgta
      301 gtggttatca atgaaaaaga atggaaaaat tttgacaaac tccctgaagc tttaggcttt
      361 acaacaagcc ctgatgatgc ttatttagtt cttcgtggta tgagaacttt agatgtaaga
      421 atgaaagctc atgaaaaaag tgcagatgaa atcgtagagt ttttacaaac aagaaaagaa
      481 attaaaacta ttttctatcc aaaactcaaa acccatccaa accatgaaat ttttatgcgc
      541 gatcataaag gtgctaacgg tatggttact atcgaatttg cagagggtta tagtaaagaa
      601 gatgctatta aatttgtaga tgagttagaa tatttttcta taggtgctag ctggggtggc
      661 tatgaaagtt tagcaactgt aactactcca ccaagaactg caacagactg gagtaaaaga
      721 ggtccatttg taagatttca tataggactt gaagatacta aagacttgat tgctgattta
      781 gctaaggctt ttgatagtat taaaaaataa ggaaataaaa tgactggaat tagcgtattt
      841 gatcataaat tattagcaga ttcatggagc acgcaagata tgcgtgctgt tttttgtgaa
      901 gaaaatcgcg tacaaaaatg gcttgatgtt gaagcagcat tagcaaaagc acaagcaaaa
      961 cttaatatca tccctcaaga agcagcagat gaaattgcaa aaaaagctta ttataaattt
     1021 atggatatgg attttatttt taatgaattt aaaaaaacca aacatccttt agttcctact
     1081 gttaggggat tagaaaaagc ttgcgataat aatctaggcg aatatgtaca ttttggggta
     1141 accactcaag atatcattga cacaggactt gttttgcaat ttaaagaagc tatgactctt
     1201 gtaaaaagcg aattaaaagc cattgcaaaa gctttagtaa aacttgctaa aacacacaaa
     1261 aatactgcta tgatgggaag aactttagca cttcaggctt tgcctattac ttttggacat
     1321 aaagtggcta tttggttaag cgaacttgag cgtcattttg aaagaatact tgaacttgaa
     1381 aaaagacttt atgtaggcag tatagtaggc gctgtaggaa ctaaagcaag tttaagtgat
     1441 gagtgcaatg aagtagaaaa actcacttta gaaaatttag gacttgatgt gcctaatatt
     1501 tcttggcaga gcgcacgtga tcgctttata gaacttggtt ttgtactagg caatatcaac
     1561 gcaaccttta acaaaatcgc tcatgaaatt ttaatccttt cacataatga aattgatgaa
     1621 gttgctgaac cttttggcaa aggacaagta ggatcaagca ctatgccaca caaaagaaat
     1681 cctgcagtaa gcgaaaatgc agttacagta agcaatgcct ttaaggcaaa tttagccatt
     1741 ttaagcgata ttgaaagaca tgaacatgaa agagatggtc aagtttggaa aatggaatgg
     1801 aagcttttac ctgaaatgtt tttaatgctt tctgtggttt tagcaaatat gaaattcgct
     1861 cttagtgatt tagaagtaaa aaaagacaaa atgcttaaaa atttaaatac tcttaatggt
     1921 tttgttttag cagagcgtgt tatgtttgca ttaagcgatc attatggaaa acaacacgcc
     1981 catgagattg tttatgaaaa tgctatgcta ggtatcgaaa aacaaaaaac ttttaaagaa
     2041 gttttacttg cagataaaag agtatctaag gtattgaaag aaaaagaaat cgatgctttg
     2101 cttgatgcaa caacctatgt aggatatgca ccaaaacttg tagatgaatt tttggaaaaa
     2161 atcaaaaata gtgctatttt aaaataggaa aaacgatgtt atatagcgaa attttagcgg
     2221 attttatttt caatcttaaa tatgaaaata tccctaatac agttgttcaa agagctaaag
     2281 aacttatgct tgatagcctt ggaacagcta tagcagcaag caaagaagaa tgtgttttaa
     2341 atgcttttaa agcttttgaa aatttaagca cagaaaaaaa tactcttatt tgggtaaatg
     2401 atcaaaaatt agatcctata tacgcagcca tgcta
//
LOCUS       DARAII010000191         2381 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.195, whole genome shotgun sequence.
ACCESSION   DARAII010000191 DARAII010000000
VERSION     DARAII010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2381)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2381)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2381
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.195"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..513
                     /locus_tag="SB143_002023"
     CDS             <1..513
                     /locus_tag="SB143_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEF9750512.1"
                     /translation="VAPFIVWFFSLFGIQASFQSALGAGFIMGIMIVPIVASLSQDCI
                     EAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLLGLSRALGETMIVVMAASL
                     RPNLTMNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSLGLVLFIITLIINMFSVYL
                     INRFHKRKNL"
     gene            510..1598
                     /gene="pstA"
                     /locus_tag="SB143_002024"
     CDS             510..1598
                     /gene="pstA"
                     /locus_tag="SB143_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEF9750513.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKTWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            1595..2335
                     /locus_tag="SB143_002025"
     CDS             1595..2335
                     /locus_tag="SB143_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEF9750514.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDDEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIELGESKEFFENPKQEKTKAYLSGAFG"
BASE COUNT          761 a          342 c          466 g          812 t
ORIGIN      
        1 gtagcgcctt ttatagtgtg gtttttttct ttatttggga tacaggcaag ttttcaaagt
       61 gctttaggcg caggttttat catggggatc atgatagtac ctatagtggc ttctttatct
      121 caagattgta ttgaagcagt aagcgagaaa aggattaatg gcgcttatgc tttaggtatg
      181 acaaaaaaag aagtggtttt tgctgtgatt ttacctgagg ctattcctgg tatagttgca
      241 gcttgtcttt taggactttc aagagcctta ggtgaaacca tgatagtggt aatggcagct
      301 tctttgcgtc caaatttaac gatgaatttt ttagaagata tgacaacagt aacggtaaaa
      361 atcgtagaag ctttaagtgg agatcaagct tttgatagtt ctttagcttt aagcgccttt
      421 tctttaggtt tggtgctttt tatcatcact ttaatcatca atatgtttag cgtttatctt
      481 attaatcgct ttcacaaaag gaaaaattta tgaaaaaact ttttaaaaaa agacaaaaag
      541 cttcaaaatc ttttaaaaga ctttgtaaaa tggggcttta tattaattta atttttcttt
      601 gtatcttttt aggaagtgtg gcttatcttg gatttcctgc ttttaagcaa acctatattt
      661 ttgtagaggc taatagaaat tctcctgctt atgatctttt atctcgtgca gaacaaagaa
      721 aaataagaac agggcaaatc actgaaaaaa cttggctttt ggcaaattca gaagtagatc
      781 aatatatgaa gcaaaaatat aatcgcctta gtgaaaaaca aagaacttta gtcgatgatc
      841 ttgtgcaaaa aggcgagata gagcttaaat ttaatagcaa tttcttttta aatggggact
      901 caaaatctcc tgaaaattca ggaattttat cttcagttgt agggactttg cttgttatgc
      961 ttgtttgtat ggttgtgagt gttcctatag gcgttgcagc ggcaatttac ttagaagaat
     1021 ttgcaccaca aaatatcctt acacatttta tagaagtgtg tattaacaac cttgcaagta
     1081 ttcctagtat cttgtttgga cttttaggac ttggagtgtt tatcaatctt tttggaatgc
     1141 ctcgttcaag tgctttagtg ggtgggctta ctttggcgat catgagtttg cctattatca
     1201 ttgtttcaac caaagcggcc ttaaaaagtg tggatatcaa tatgaaaaat gctgcttatg
     1261 ccttaggtat gacaaaggtt caaatggtaa aaggtattat gttacctttg gctatgccta
     1321 tgattttaac aggttctatt ttgactttag caggggctat aggagagact gcacctttga
     1381 tgattatcgg catgatagcc tttatccctg atgtagcaag ttcgattttt gatccaacta
     1441 gcgttttgcc tgctcaaatt tactcatggt cggctatgcc agagcgtgca tttttagaaa
     1501 gaaccgcagc gggtattatt gtgcttttag gacttttagt tgtgttaaat cttagtgcaa
     1561 tattattaag aaaatatttt caaggaaaat taaagtgata gcaaaaacaa caaatttaaa
     1621 tttattttat ggaaaaaaac aagctttatt tgatatcaat atgcaaatag aacaaaacaa
     1681 aattaccgca ctcatcggtg cttcaggatg tggtaaatcc acttttttgc gttgttttaa
     1741 cagaatgaat gataaaatcg caaaaatcga tggtttagta gaaattgaag gaaaagatgt
     1801 taaaaatcaa gatgtagtag ccttacgcaa aaatgtaggc atggtttttc aacaacctaa
     1861 tgtttttgta aaaagcattt atgaaaatat ctcttatgca ccaaagcttc atggtatgat
     1921 taaaaacaaa gatgatgaag aagctttagt ggtggattgt ttacaaaaag tagggctttt
     1981 tgaagaggtt aaagataaat taaagcaaaa tgccctagct ctttcaggcg gacaacaaca
     2041 acgcctttgt atcgcaagag ctttggcgat aaaacctaag ctcttgcttt tagatgagcc
     2101 aacttccgca cttgatccta ttagctcagg tgttatagaa gagctcttaa aagaactaag
     2161 tcataatctt tctatgatca tggttacgca taatatgcaa caaggtaaac gcgtggctga
     2221 ttatactgca ttttttcacc taggtgagct tatagaattg ggtgaaagta aagaattttt
     2281 tgaaaatcca aaacaagaaa aaaccaaggc ttacttaagc ggtgcttttg gataagattt
     2341 attttttgga aatttgatga tataattaat taaaaatttc c
//
LOCUS       DARAII010000192         2333 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.196, whole genome shotgun sequence.
ACCESSION   DARAII010000192 DARAII010000000
VERSION     DARAII010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2333
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.196"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>2333)
                     /gene="cmeB"
                     /locus_tag="SB143_002026"
     CDS             complement(<1..>2333)
                     /gene="cmeB"
                     /locus_tag="SB143_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEF9750515.1"
                     /translation="IGTDPDQATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAA
                     ISMYSSDGSMSAVDVYNYITLNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKF
                     GITATDVISAVNDQNAQYATGKIGEEPVTQKSPYVYSITMQGRLQSPSEFENIILRTN
                     DDGSFLRLKDVADVEIGSQQYSSQGRLNGNDAVPIIINLQSGANALNTAELVQAKMQE
                     LSKNFPKGLTYNIPYDTTKFVIESIKEVIKTFIEALVLVIIVMYMFLKNFRATLIPMI
                     AVPVSLLGTFAGLYVLGFSINLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISV
                     KDAAIQAMQEVSSPVISIVLVLCAVFIPVSFISGFVGEIQRQFALTLAISVTISGFVA
                     LTLTPSLCALFLRRNEGDPFKFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIM
                     LGAIFYLNKAVPSSLVPEEDQGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKD
                     AMAMIGFDLFTSSLKENAAAMFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIG
                     LPPIPGLSITGGFEMYVQNKSGKSYDEIQKDVNKLVTAANQRKELSRVRTTLDTTFPQ
                     YKLIIDRDKLKHYNLNMQDVFNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQD
                     TLKNIFVRSNDGKMIPLDSFLTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIE
                     AIAQVAKETLGDDYSIAWSGSAYQEVSSKGTASYAFA"
BASE COUNT          747 a          412 c          368 g          806 t
ORIGIN      
        1 aaagcaaaag cataacttgc tgttccttta ctagaaactt cttgataagc tgatccactc
       61 caagctatgg aataatcatc ccctaaagtt tcttttgcta cttgagcaat cgcttctata
      121 gcttgacctg aagtataacc tggtgcgggt tgaccttgaa cttgtgctgc tgggaaaagg
      181 ttgaatcgtt ttacatcatc tggccctgaa cttctttgta aagttaagaa agaatcaagt
      241 ggtatcattt ttccatcatt tgatcttaca aaaatatttt ttaatgtatc ttgtgtattt
      301 ctaaaatcac cttttgcgcg gatatttact tggaaatttt tacctagcat agaaaaatca
      361 ttaacataat aagtgcctat agttgcattc atcgtgttaa aaacatcttg catgttaaga
      421 ttgtagtgtt ttaatttatc tctatcaatt ataagcttgt attgagggaa agttgtatca
      481 agtgttgttc ttactcttga tagttctttt ctttggttgg ccgcagtaac aagtttattt
      541 acatcttttt gtatttcatc atagcttttt ccgcttttgt tttgaacata catttcaaaa
      601 ccgcctgtga tacttaatcc aggtatagga ggtaagccta taaatatact tgaagcattg
      661 cgatcaaaag caaatttttt attaagctcc atggcgattt catcagcact cacatttcta
      721 tctttccaat ctttcaagcc tataaacatt gcagcggcat tttctttaag tgagcttgta
      781 aataaatcaa aacctatcat agccattgca tctttaactc cattagtttt taaaacttct
      841 tgacttatgt gatcaacttc tgagattgtt ctatggagtg ctgaagctga aggaaggttg
      901 ataatactaa tcatcaaacc ttgatcttct tcaggaacta aagagcttgg tactgcttta
      961 ttaagataaa aaatcgctcc gagcataata caaaaaatta aaacaaaacg aatggttctt
     1021 tttagaatat atgctactcc tgcactaaat acagaggtac tccaatcaaa aaaatcatta
     1081 aatttcttta caaatttaaa tggatctcct tcattacgtc gcaaaaagag tgcgcataaa
     1141 gaaggtgtta aggtaagagc aacaaaacct gatatggtta cagatatagc taaggtaaga
     1201 gcaaattgtc tttgaatttc tccaacaaaa cctgatataa aagaaactgg tataaaaaca
     1261 gcacaaagca caagaacaat tgaaattaca ggtgaactta cttcttgcat cgcttggata
     1321 gcagcatctt ttacgcttat ttgttcattt tcgtgtaaaa tcctatcgat attttccaca
     1381 actataatcg catcatctac aacaatccct atagctaaaa tcaaggcaaa aagtgtaagc
     1441 aggttaatac taaagcctaa aacataaagt ccagcaaaag ttcctaacaa tgaaacaggt
     1501 acagctatca taggaataag cgttgcacgg aaattcttta agaacatata cataacaata
     1561 ataactaaaa ctaaagcttc aataaaagtt ttaattactt ctttgattga ttctatcacg
     1621 aattttgttg tatcataagg aatattatat gttaaacctt ttgggaaatt ttttgaaagt
     1681 tcttgcattt tagcctggac aagttctgct gtattgagtg catttgcccc tgattgaaga
     1741 ttgattataa tcggaactgc atcattgcca tttaatcgtc cttgtgagct gtattgttgt
     1801 gaccctattt ctacatctgc tacatctttt aatcttaaaa atgatccatc atcatttgtt
     1861 cttaaaataa tattttcaaa ttcactcggg ctttgcaatc ttccttgcat ggtgattgaa
     1921 taaacataag gggatttttg ggttacaggt tcttcgccaa ttttaccagt tgcgtattgg
     1981 gcattttgat cattaaccgc agaaattaca tcagtagctg tgattccaaa tttatttaat
     2041 aaatcaggct tgagccaaat tcttaaagaa taattacgat ttcctatagc attagcgtct
     2101 ccaacacctg gaactctttt taactcatct aaaacattta aagtgatata gttatataca
     2161 tctactgcac tcattgagcc atcacttgaa tacatagaaa ttgcagcaag tgttgttgag
     2221 gaagtttttc taactgttac tccaagtttt ttgactgcat ctggcatttt tgcagttgcg
     2281 gctgaaattc tattattaac atctatggtg gcttgatcag gatctgtacc gat
//
LOCUS       DARAII010000193         2322 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.197, whole genome shotgun sequence.
ACCESSION   DARAII010000193 DARAII010000000
VERSION     DARAII010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.197"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..520)
                     /locus_tag="SB143_002027"
     CDS             complement(<1..520)
                     /locus_tag="SB143_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEF9750516.1"
                     /translation="MNLPVLDLKIYEKDKSAFLKNLREITSNVGFFYLINHGIDKNLN
                     ENLFKLSKDFFNLPRSSKELISMVHSPQFRGYTSEGFEYTAGEKDYREQIDIGTERKA
                     LKWDLNSPLWQRLEGPNLWPDEIPELKEIFLAWHEQTRNACLKILQAFAEALDLPSDA
                     FGKLYGENSYEHC"
     gene            complement(836..1330)
                     /gene="luxS"
                     /locus_tag="SB143_002028"
     CDS             complement(836..1330)
                     /gene="luxS"
                     /locus_tag="SB143_002028"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEF9750517.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKTMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSDLVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWEAAMKDILNVSDQSQIPELNIYQCGTCAMHSLDEAKEIAQKVLNSTIGVMNNEELK
                     LENI"
     gene            1445..>2322
                     /gene="gatB"
                     /locus_tag="SB143_002029"
     CDS             1445..>2322
                     /gene="gatB"
                     /locus_tag="SB143_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEF9750518.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFININGENKRIGITRAHLEEDAGKNIHENNYSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIP"
BASE COUNT          798 a          364 c          372 g          788 t
ORIGIN      
        1 tacaatgttc ataagaattt tcaccataga gtttgccaaa ggcatcgcta ggcagatcaa
       61 gagcttcggc aaatgcttgt aaaattttta aacaagcgtt tcttgtttgt tcgtgccaag
      121 ctaaaaatat ttctttaagt tcaggaattt catcaggcca taaatttgga ccttctaatc
      181 tttgccatag gggcgaattt aaatcccatt ttaaagcttt tctttctgtg cctatgtcaa
      241 tttgttctct ataatctttt tctccagcag tatattcaaa gccttcgctt gtataacctc
      301 taaattgagg cgaatgcacc atggaaataa gttctttaga gcttctagga agattgaaaa
      361 aatctttact aagtttaaat aaattttcat ttaaattttt atcgataccg tgattgataa
      421 gataaaaaaa acctacattt gaagtaattt ctcttagatt tttaagaaag gcacttttgt
      481 ctttttcata aatctttaaa tcaagtacag gtaaattcat tttctctcct taaaattata
      541 tttaaggata agaagatatc ttaatgttta gattttgttt cgtaagattt aactaaaaat
      601 taggatttta agttgtgttt tgaaaaaaat aaactttttg acttttctac acattatatc
      661 tccttatcca ccttttgggc ctttggaaac ataatgttaa agccaaagga cgcactagat
      721 attacacatc tggcacatca gtttcatttt ttctccttag aaagttaaat tctgcacatt
      781 gtataaaaaa atatattaaa aaaagcttag tcattagaaa tttaaggact aatttttaga
      841 tattttcaag ttttaattct tcgttgttca ttacgcctat ggtagaattt aaaacttttt
      901 gtgcaatttc ttttgcttca tccaaagaat gcatagcaca agttccacat tgatagatat
      961 tgagttcagg aatttgactt tgatcgctca catttaaaat atctttcatt gcagcttccc
     1021 aagccttggc cacacttttt tcatcaggtg tgccaattaa actcatataa aaacctgtgc
     1081 gacatcccat aggcgaaatg tcgatgattt caaccaaatc cgaatttaaa tgatctctca
     1141 taaaacctgc aaataagtgt tctagtgtat gcgtaccttt ttcactcatg atgtctttat
     1201 tgggtatgca aaaacgcaag tcaaatacgc taatatcatc gccttttggt gtcttcattg
     1261 ttttagctaa acgcacagcg ggtgctggca ttttggtatg atctacttta aaactatcaa
     1321 gtaatggcat tttaactcct ttgtatataa attattttat agattataac atttaaaaat
     1381 aatatttaaa gcctttctaa aagaaaaaag gataaaataa agcattaaaa ttcaaggaaa
     1441 atcaatgttt gaagtagtta taggacttga agtacatact caactaaaca ccaaaacaaa
     1501 aatattttgc tcatgcgcaa cttcttttgg agaagctcca aatacaaatg tttgtcccac
     1561 ttgtttggct ttaccgggtg ctttacctgt tttaaatgaa gaagcggtaa aaaaggccat
     1621 cgcttttggg aaagcggtaa atgccactat aaacaaaaaa agtgttttta atagaaaaaa
     1681 ttatttttat ccagatttgc ccaaagctta tcaaatttca caatttgata ttcctatagt
     1741 agaaaaaggt gagcttttta tcaatataaa tggcgaaaat aaacgcatag gtattacaag
     1801 agcgcattta gaagaagatg cgggtaaaaa tatccacgaa aataattatt ctaaagtaga
     1861 tttaaaccgc gcaggaactc ctttgcttga aattgtaagc gaacctgaac ttagaagcag
     1921 tgatgaagca gtggcgtatc ttaaaaaact tcattctatc atacgttttt tagatatttc
     1981 tgatgcaaat atgcaagagg gaagttttag atgtgatgct aatgtaagta taagaccaaa
     2041 gggcgatact aagctttaca ctagagtaga gattaaaaat cttaattctt tccgttttat
     2101 ccaaaaagct atagaatatg aggtaaaaag acaaagtgag gcttgggaag atggaactta
     2161 cgaacaagaa gtagttcaag aaaccagact ttttgataca acaaatttag ttacaagaag
     2221 tatgcgtggt aaagaagaag cggcagaata tcgctatttt ccagatcctg atttgttgcc
     2281 tgttttatta aaagatgagt ttttggatat taaaatccct ga
//
LOCUS       DARAII010000194         2314 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.198, whole genome shotgun sequence.
ACCESSION   DARAII010000194 DARAII010000000
VERSION     DARAII010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.198"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..818)
                     /locus_tag="SB143_002030"
     CDS             complement(<1..818)
                     /locus_tag="SB143_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEF9750519.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ILKYEITKNEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKI"
     gene            complement(949..1752)
                     /locus_tag="SB143_002031"
     CDS             complement(949..1752)
                     /locus_tag="SB143_002031"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEF9750520.1"
                     /translation="MENLYALMLGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            complement(1826..>2314)
                     /locus_tag="SB143_002032"
     CDS             complement(1826..>2314)
                     /locus_tag="SB143_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OPT/YSL family transporter"
                     /protein_id="HEF9750521.1"
                     /translation="AQGIFHHNIEWGYMAFGVFVGILMIIIDKILRRTQKMSLPPLAV
                     GIGIYLPPAVNIPLVIGGILKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIV
                     GESIFGVIIAGITVFSVSMGGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKK
                     DA"
BASE COUNT          849 a          453 c          275 g          737 t
ORIGIN      
        1 ctgattttcc atgcatctgc ttttaaaagt tcaggcccac gcacaggctc ataaccacgt
       61 aaacgatgga tcttataaag catatgttca agtttagatc taagtcttgc accgttactc
      121 aaccaaatag gaagacctcc tccgatctca tcatcaaaag taaaaagctt aagctctgtt
      181 ccaagctttc tatgatcgcg ttttttagct tcttcaataa tggttaaata ctcttttaaa
      241 ctttccttat ctgcaaaagc ggtaccataa attcgagtaa gcatttctct tttttcatcg
      301 ccacccaaat acgctcctgc aacacgagtg agtttaaaaa agcgtaaaaa tttcgtattt
      361 ggcacatgag gaccacgaca caaatcttca aattcacctt gtttataaat acttacagct
      421 ccatcaggaa tacgcaataa aacttcttgt tttaaatcat cattttgaaa tttagccaaa
      481 gcttcgtttt ttgtgatttc atattttaaa atttcaatct ttgcttcagc aagttctttc
      541 atcttttttt caatttttac taaatcttct tcgccaatct tactttccac acgaaaatca
      601 taataaaatc catcttctat aacaggacca acgaaaaatt tagcctcagg atacaaactc
      661 ttaatcgcct gtgccattaa atgcgcacaa gaatgacgaa ttacttctaa actttcttta
      721 gaattatcaa aataaatttc ttttaaattt gtatttttca cactttgaga gtcaattatt
      781 gtctcattgt ccaaatacgc aataacttct ttttccatat ttttaaccct ttgtcgctca
      841 cttaccctgt gagtgtttat aaagttctaa ttttaacttt ctaagactta attatttttg
      901 aaattcagct tatttttaaa aaaatcttag aataaattta atatttattt atagcttaaa
      961 ttcacttcca gcatttaaaa tcccactata atacaaataa aagaaaacaa atcctaaaat
     1021 aatacgataa attccaaaag ggataaagtc gaatttagaa ataaatttta agaaaaattt
     1081 tataactaaa actgcaacaa taaaagcagt gataaaacct atgcctaaag gaattaaaga
     1141 atttgcattg ctaagaagct caggctcttt ataaatgcta taagctgtag cgataatcat
     1201 cgttggaatg gcaagcaaaa aactaaactc agccgcaact tttctattaa atcctagcaa
     1261 aagtccacca ataatacttg ctccacttct tgaagtacca ggaatcatgg ctaaagattg
     1321 aaaaatacct atgcaaaaag cttgtttaaa acttatttct tctaaagaat tgatacgata
     1381 ttgtttattt ttatgtgcaa gttctataag aataaacaca acaccgccaa aaatgagcat
     1441 tccaaccaca acccaaccat taaataaagc atttaagtat tttgccacaa aaagccctat
     1501 aactccagta ggaaaaaatc caactgcaag ttttaaccaa atatcaagcc cttgaaacaa
     1561 tttacgccaa aatacaaaaa tgaccgccaa aatagaacca agctggatga taatcaaaaa
     1621 gcttttccaa aactcatcta tatcgatacc taaaatagtc gtacctaaaa tcatatgtcc
     1681 tgttgaagaa ataggtaaaa actcagtcag accttctata attccaagca ttaaagcata
     1741 taaattttcc attttaatcc ttgaatgata attgcaaaag aaaaattata tcagaatgga
     1801 ttaaatgggg ttttaacccc aaaaattaag catctttttt aacaatacgc ttaatgaaat
     1861 ataatacaac tcccacaaaa aagataagtg cgaaaagctc actatcatga aaatttgcta
     1921 aatttaaagc taaaggattt tcactaccac ccatacttac tgaaaataca gtaattcctg
     1981 cgataattac cccaaaaata ctttcaccca ctataagccc tgaagcaaaa agcgtgcctc
     2041 tttgctcaca acttgcaagt ttttcttctt tatgagaatt ttttgcatat tttttagtca
     2101 agtgttgcat tacaatatat tttaaaattc cgcctataac taaaggtata tttacagcag
     2161 ggggaaggta aatacctatt ccaacggcta aaggcggcaa agacattttc tgtgttcttc
     2221 ttaaaatttt atctataata atcattaaaa ttcctacaaa tacaccaaaa gccatataac
     2281 cccactctat attgtgatga aaaattcctt gggc
//
LOCUS       DARAII010000195         2306 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.199, whole genome shotgun sequence.
ACCESSION   DARAII010000195 DARAII010000000
VERSION     DARAII010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2306)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2306)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2306
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.199"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            39..683
                     /locus_tag="SB143_002033"
     CDS             39..683
                     /locus_tag="SB143_002033"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750522.1"
                     /translation="MLRKKKTIFDKPKETYISKKSDILITGINASGKSKRLNSFLKNA
                     KDLWKKEHIIFFHATDSLSEIFHRNLDNDDETKRLIYGNENANLNLENLDTSKNYLKI
                     IALVEKSKNSTLIIDDLDKLTGKKLEMAKELLRNCKRFIATAKDENSINKTIGGILKG
                     RRKRLEVIALSSKASLDATNALFVIFVLALFATGLYELALLVTAGRIAMRGMQK"
     gene            680..1351
                     /locus_tag="SB143_002034"
     CDS             680..1351
                     /locus_tag="SB143_002034"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750523.1"
                     /translation="MKLKILILVLWLMPLFGDYNASKITKEDLENLAKMDASIYEKST
                     ARQRLSVEQIVNLIWVNRAIKIEPLLERFNLSVSGFAGEKSKISYYESSDKYEKLRPY
                     AYIGLQAEFKIIDAKEARMKKDEIRKQRELIAKFVRDFFAKKIEISHLKNEISILQEK
                     ENRLKIRVNEAVANFDERLKNLETLHTKTAKLDLAELELSELKFNLLDFVKDDFKPNL
                     ERLLK"
     gene            1348..1884
                     /locus_tag="SB143_002035"
                     /pseudo
     CDS             1348..1884
                     /locus_tag="SB143_002035"
                     /inference="COORDINATES: protein motif:HMM:NF016214.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
BASE COUNT          779 a          350 c          402 g          775 t
ORIGIN      
        1 attttagatt taaaaaagat ggcaattgca ctaaaatttt gttgcgaaaa aagaaaacga
       61 tttttgacaa gccaaaagaa acttacatct ctaaaaaaag cgatatttta atcactggaa
      121 taaacgcttc gggaaaatcc aaacgcttaa attctttttt aaaaaatgct aaggatcttt
      181 ggaaaaaaga gcatataatt tttttccatg caaccgatag cctttctgaa atttttcatc
      241 gaaatttaga caacgacgac gaaactaaaa gactaatcta cggcaatgaa aacgcaaatt
      301 taaatttaga aaatttggac acttcgaaaa attatttaaa aattattgca ctcgtggaaa
      361 aatcaaaaaa ttcaactttg ataatcgatg atttagacaa gcttacagga aaaaagcttg
      421 aaatggctaa ggagctttta agaaactgca aacgctttat cgcaactgca aaagatgaaa
      481 attctataaa taaaacaatt ggtggaattt taaaagggcg acgcaaaagg cttgaagtaa
      541 ttgctttaag ctcaaaggct tcgctggatg ctactaacgc actttttgta atttttgttt
      601 tagcgctttt tgcaactgga ctgtatgaac tggctttgct tgttaccgct ggaagaatag
      661 ctatgcgtgg aatgcaaaaa tgaaattgaa aattttaatt ttagtccttt ggctcatgcc
      721 tctttttggt gattacaacg catctaaaat cacgaaagaa gatttagaaa atttagcaaa
      781 aatggacgca tcgatttatg aaaaaagcac ggcacgccaa aggcttagtg ttgaacaaat
      841 tgtaaattta atttgggtta atcgtgctat aaaaattgaa ccgcttttag aacgctttaa
      901 ccttagcgtc tctggcttcg ctggtgaaaa gtctaaaatt tcatattatg aaagttcgga
      961 caaatatgaa aaattacgac cttatgctta cattggacta caagcagaat ttaaaatcat
     1021 tgatgcaaaa gaagcgagaa tgaaaaaaga tgagattaga aagcaaagag aattaatcgc
     1081 taaatttgta cgcgattttt ttgctaaaaa aattgaaatt tcgcatctca aaaatgaaat
     1141 ttcaatcctg caagaaaaag aaaataggct aaaaatccgt gtcaatgaag cggtggcgaa
     1201 ctttgatgaa cgcttgaaaa atttagaaac cctgcataca aaaaccgcga agcttgatct
     1261 agccgaactt gagcttagcg aacttaaatt taatttgctt gattttgtaa aagatgattt
     1321 caagccaaat ttagaaaggc ttttgaaatg acttggaaaa gccatctagc tattggcact
     1381 gcgatttctt tgccattttc tccttttgga acgcctttag ccatgcttgg aagcaccgca
     1441 cctgattgga ttgaatggat tttaaaattt ttcggaattc acgttaagca ccgcggcgaa
     1501 actcattttt taatcattcc gctttcaatc attatcattt cttttgtgat tgattttaat
     1561 aactttcttt tttggttcgg aatgggatat ttaagtcact ggattgctga ttcactcacg
     1621 atttcgggtg ttcctatttc acctttagat aaaaataaat ttactctttt tggtggaaag
     1681 attaaaacag gtgagccttt ggaatttatc cttgcttttg gacttttagc gatttcgctt
     1741 ttaatcgcaa aaccatcaat tgattttttt attcgtgatg agtcaaactt ttttaatgcc
     1801 tactatatga attacaaaga attgaatgag aaaaaaatta ttgacaataa agaatatctt
     1861 gagaaaaggt ttaaattttt ttgatgaaaa gttttgttag atttgaattt gtatttacaa
     1921 ttttgataat cacttttttc tattttcttt tcaaaattag ccaaattttg atttaaaact
     1981 tttttgaagg gttttatacc tttttttaaa aaaaaacgat tttagacgtg tttctgagct
     2041 tttatgagct atttataact cattcttatc agtttagcaa atcgcacctg ttaaggtgca
     2101 atgatttgcg ataacggggt gcgggggcgt gaagttagcc tagagctaac gaacggacaa
     2161 gcccccgccc taatgtatca tcaaaacttt ttttgttttt tttctcgcgc gcgtacgcgt
     2221 acgcgaattt ttttattttt tatatatttt tttatatttt tagggggctt tctaagccct
     2281 ataaaatggg gattttagaa cctatt
//
LOCUS       DARAII010000196         2305 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.200, whole genome shotgun sequence.
ACCESSION   DARAII010000196 DARAII010000000
VERSION     DARAII010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2305
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.200"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..636
                     /gene="cdtA"
                     /locus_tag="SB143_002036"
     CDS             <1..636
                     /gene="cdtA"
                     /locus_tag="SB143_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cc-CdtA"
                     /protein_id="HEF9750524.1"
                     /translation="KPTPPVKQKTPSLVEGKKFPAIPLVPPVITPNTFKGDNAVKGPL
                     PRLKSPNEFASNALYENTGMVSDFVTIMNPNGASLTIWALNPGNWIWGYSLFASRPFG
                     DARAWQLIEFPNNTVMIKNAKTFTCLNAYRNGIVHYPCDQTNFAQFWRLYPMTNGAYQ
                     IQNFATQQCIQTPVSNVMEEFNLSFYNIYLTDCLKEKEKNLDRQWYIGAPI"
     gene            661..1464
                     /gene="cdtB"
                     /locus_tag="SB143_002037"
     CDS             661..1464
                     /gene="cdtB"
                     /locus_tag="SB143_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cc-CdtB"
                     /protein_id="HEF9750525.1"
                     /translation="MKKIVFLILSFNVLFAALENYNTGTWNLQGSSAATESKWNVSIR
                     QLITGANPMDVLAVQEAGVLPSTAMMTPRQVQPVGVGIPIHEYIWNLGSVSRPSSVYI
                     YYSRVDVGANRVNLAIVSRVQADEVFVLPPPTVASRPIIGIRIGNDAFFNIHALASGG
                     NDAGAIVAAVDMFFRNRPDINWMILGDFNRESGALVTLLDPDLRARTRVVVPPSSTQT
                     SGRTIDYAITGNSNTAALYNPPPIVAILALEGLRTFLASDHFPVNFRRP"
     gene            1474..2046
                     /gene="cdtC"
                     /locus_tag="SB143_002038"
     CDS             1474..2046
                     /gene="cdtC"
                     /locus_tag="SB143_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cc-CdtC"
                     /protein_id="HEF9750526.1"
                     /translation="MKKFFILFFALLSFLKAEPSLDELADFTPMFAIRSLETGISLSP
                     FRKTSKRLEDQNWFLKEIVANDELKARDMHAKDLPFGYVQFISPRGDDICLAVLSEKS
                     FGTKSCKQDLQDGTMQTIFSIIPMTNGSIQIRSLTNGGNQCMSTFPDSSIAIENRFGL
                     GECLLDRSIVTVLSKLFFFSPAIIEASAIY"
     gene            complement(2100..>2305)
                     /locus_tag="SB143_002039"
     CDS             complement(2100..>2305)
                     /locus_tag="SB143_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004284782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HEF9750527.1"
                     /translation="VGAFLILPIMNELTLAITFAVVAGIMVFISFDELLPAAKTYDKA
                     HDSLYGLVLGMAVMAVSLILLNP"
BASE COUNT          744 a          422 c          425 g          714 t
ORIGIN      
        1 aaacctacac cccctgtcaa acaaaaaaca ccaagcttgg tagaaggtaa aaaatttccc
       61 gccataccac ttgtcccacc tgtaatcact cctaatacct ttaaaggaga taatgccgtc
      121 aaaggtccat tgccaaggct aaaatctcca aacgaatttg cttcaaatgc tttatacgaa
      181 aacacaggta tggtaagtga ttttgtcact attatgaatc ctaatggagc atctttaaca
      241 atctgggctt taaatcctgg caattggata tggggatata gtttatttgc tagtagacct
      301 tttggagatg caagagcttg gcagcttatt gaatttccaa acaatacagt aatgattaaa
      361 aatgcaaaaa catttacttg cttaaacgcc tatagaaatg gcatcgttca ttatccttgt
      421 gatcaaacaa attttgcgca gttttggaga ctttatccga tgactaatgg agcttatcaa
      481 attcaaaatt ttgccaccca acaatgtata caaacacctg tttcaaatgt aatggaagaa
      541 tttaatttga gcttttataa tatttattta accgattgtt tgaaagaaaa agaaaagaat
      601 ttggatagac agtggtatat aggcgctcct atttaatttt ttcgctatga aaggaagata
      661 atgaaaaaaa tagtattttt gattttaagt tttaatgtat tatttgccgc tttagaaaat
      721 tacaacaccg gaacttggaa tttgcaaggc tcatcagctg caactgaaag caaatggaat
      781 gttagtataa gacaactcat aaccggtgca aatcctatgg atgttttagc tgttcaagaa
      841 gcgggggttt tacctagtac agctatgatg actcctagac aggtacaacc cgtgggcgtg
      901 ggtattccta tacatgaata catatggaat ttaggctctg tatcaagacc tagctctgtt
      961 tatatatatt attctagagt ggatgtagga gcaaatcgtg tgaatttagc tatcgttagc
     1021 agagtgcaag cggatgaagt ttttgtttta ccccctccaa cagttgcttc aagacctatt
     1081 ataggcatac gcataggcaa tgatgctttt ttcaatatac acgctctagc aagtggggga
     1141 aatgacgcag gagccattgt cgctgctgtg gatatgtttt ttagaaatag acctgatatt
     1201 aattggatga ttttaggcga ttttaataga gaatcaggcg ccttagtaac cttgctagat
     1261 cctgacttaa gagcacgcac tcgcgtagtt gttccgcctt cttctacgca aacaagtgga
     1321 agaacgattg attatgctat cactggaaat tccaacactg cagctttata caacccacca
     1381 ccgatagttg cgattttagc tttagaagga ttaagaacct ttttggcttc agatcatttt
     1441 cctgtaaatt ttagaagacc ttaggagctt aatatgaaaa aattttttat tttatttttt
     1501 gcccttttga gctttttgaa agcagagcct agcttggatg aattagcaga ctttactcct
     1561 atgtttgcta taagatcttt agaaacagga atttctttaa gtccttttag aaaaacttca
     1621 aaaaggttag aagatcaaaa ttggttttta aaagagattg tagcaaatga tgagctaaaa
     1681 gctagggata tgcacgcaaa agatttgcct tttggctatg ttcagtttat aagccctagg
     1741 ggcgatgata tatgcctagc tgttttaagt gaaaaaagtt ttggcaccaa atcttgcaaa
     1801 caagatttgc aagatggaac aatgcagact attttttcta tcataccaat gacaaatggt
     1861 tctatacaaa ttagatcttt aaccaatggt ggcaatcaat gcatgagcac ttttcctgac
     1921 tctagtatcg ccatagaaaa tcgctttggt ttaggagaat gccttttgga tcgttctatc
     1981 gtaactgtat taagcaaact tttctttttc tcccctgcta taatcgaagc aagcgcaatt
     2041 tactaacact tttctaacaa aaccaagctt tcatggcttg gtttataact tgatttaact
     2101 caaggattta acaaaatcaa actcaccgcc attaccgcca ttcctaaaac aagtccataa
     2161 aggctatcgt gggctttatc ataagtcttt gccgcaggca ataactcatc aaaagagata
     2221 aacaccatga tcccagccac tacagcaaag gtgatggcta aagtaagctc attcatgata
     2281 ggcaagatca aaaacgctcc cacaa
//
LOCUS       DARAII010000197         2202 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.207, whole genome shotgun sequence.
ACCESSION   DARAII010000197 DARAII010000000
VERSION     DARAII010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.207"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(103..1245)
                     /gene="legC"
                     /locus_tag="SB143_002040"
     CDS             complement(103..1245)
                     /gene="legC"
                     /locus_tag="SB143_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_052853885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HEF9750528.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDMIAYNYRLCNVNAAILLAGLENLE
                     PFLENKRELAKIYKDFFKNHDKCEFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQDCQSDELINTKNLEKRLVNLPSSVRRK"
     gene            complement(1238..2200)
                     /gene="legB"
                     /locus_tag="SB143_002041"
     CDS             complement(1238..2200)
                     /gene="legB"
                     /locus_tag="SB143_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038816896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEF9750529.1"
                     /translation="MLVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLEKSP
                     FLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGTLNM
                     LEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSYYNS
                     FNLNVNIARPFNTYGPRQSARAIIPTIITQILSGVKEIKLGDLSPKRDLNFVLDTCEG
                     FISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEVFRL
                     CCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
BASE COUNT          656 a          377 c          356 g          813 t
ORIGIN      
        1 attttttcat tgcttcccaa attgtttgaa atttcttcat tgctaatata ttttttcatt
       61 aacgctccca ttttaaaaag ttttcatttt aacataaatt gtttattttc ttctgacact
      121 gctaggtaaa ttaaccaagc gtttttctaa atttttggta tttataagct catcgctttg
      181 acaatcttga aaagctttta aacttggtaa gcttttccat acagggcgaa caaaaatatt
      241 atttttcaag cattcttcta aaaagatatt tcttaaattt tcatccttaa aaagcaaggt
      301 attgagccaa aaattgcttt tttcattgct tttttcatcg ataaattcgc atttatcgtg
      361 atttttaaaa aaatccttgt aaattttagc aagttctctt ttgttttcta aaaaaggttc
      421 taaattttca agtcctgcaa gcaagatcgc tgcgtttaca ttacaaagac ggtaattata
      481 agctatcatg tcatgatcgt attcgtaagg atgggggatt ttggctgtgg tgctaaggtg
      541 tcttgcaagc ttagctaaat tttcatcatc gcttagtatc gctccaccac atccgcctgt
      601 gatgatttta ttgccattaa agcttaaaat tccacatttt ccaaaagtgc ctaaggcctt
      661 attttcataa gtgcttccta aggcttctgc agcatcttca attaaaagga tgtggtattt
      721 ttcacaaagc tctttgatgg cttttatatg agcgcttaaa ccaaaggtgt gcataataac
      781 acaagctttg atgggtttgt gtgtggtttt gttatagcta agattatctt tttgataagt
      841 ttgattttct aaaaaatgct ctaaagcctt aggacttaaa cttagagtgt tttcatctat
      901 atctaaaaaa acgggttttg cacctgtata agcgatagca ttggccgtag cgacaaagct
      961 tatgctttga gtgatgactt cgcagttttc atcgatacca ttagctagta aagcgatatg
     1021 aagggctgct gtgcctgtat ttgtagcgat aacaaagcgt gctttggttt tttcttttaa
     1081 agcttcttca aaacgcgtta caaattctcc cacgcttgaa acaaaaccgc tatcaatgca
     1141 ctctaaaaga tattttttct cattgcctat aaaacaaggc tcatgtaggg cgatattttc
     1201 tttattaaaa agacttttta taaaagaaat ttctttttca aacattataa agctcacttt
     1261 tataattttc taaattttct ttaaaatact ctatgctttg tctcaagcct tcttctagac
     1321 ttattttgct ttgccaattt gtagcttttt taagcttgtt tgcatcgcaa caaagtctaa
     1381 aaacttcgct atttttagga cgcaatcttt gttcatcttg gatgattttt actttagaat
     1441 ctaaaatttt ttgtatgaga tcaagtactt cttgcatgga gtattccact cctgagccta
     1501 tattataaac ttctccaaaa tgttttaaat ttaaaagaga gataaaaccc tcgcaagtat
     1561 ctagcacaaa atttaaatcc cttttagggc ttaaatctcc tagtttgatt tcctttactc
     1621 cacttaaaat ttgtgtgatg atggtaggta tgatagccct tgcgctttgt cttggtccat
     1681 aggtgttaaa agggcgtgca atattgacat ttaaattaaa agaattataa taactcagcg
     1741 ccatcatatc tgcagcgatt ttgcttgcag aataagggct ttgaggttgt aaagggtgtt
     1801 tttcatcgat aggtacataa aaggctgtgc cataaacttc gcttgttgag gtgtggataa
     1861 aatgtgaaat ctcgtttttt ttagctgctt cgagcatatt taaagtgcca ttgacattgg
     1921 tatccacata gctttgtggg gctgtgtagg agtaggggat agcgattaaa gcgccaagat
     1981 gaaagatcgc atctatattt ttggtgattt tttcgcaaaa aaaactatct cttaaatccc
     2041 cacttataac ttccatgtct tttaaaaaag gacttttttc taaatgtccc caaaaattaa
     2101 aagaattata ctggcttaaa gctctgactt taaaaccttt tttgaccaaa ctttcacaaa
     2161 gatgagaacc tataaaacca tcagcacctg taactaaaat at
//
LOCUS       DARAII010000198         2172 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.208, whole genome shotgun sequence.
ACCESSION   DARAII010000198 DARAII010000000
VERSION     DARAII010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2172)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2172)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2172
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.208"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..267
                     /locus_tag="SB143_002042"
     CDS             <1..267
                     /locus_tag="SB143_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEF9750530.1"
                     /translation="VMDIAETATTNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAE
                     STIRDVDFAAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ"
     gene            complement(298..>2172)
                     /locus_tag="SB143_002043"
     CDS             complement(298..>2172)
                     /locus_tag="SB143_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750531.1"
                     /translation="NNFNKNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNLDINI
                     IKKRNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALKRIII
                     FEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLHI
                     ANDFYEHYKEDILKLNKLNMQIIKNHNLMRGNDPKDAMQGIEQFVYNLPQMITHSSYK
                     ELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIKPDYV
                     CMLERDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLEKNQRKYMLIIKGQPFAR
                     CLGLDDYGYINAGMSVSHMAYELAENLGHKNIILIGQDLAYAKDGQTHSQGFIHANLH
                     NGDYERDLDKFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGARIES
                     AVEKPFKELCEDLLKNKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNFKKEC
                     KKVQKQIHNLTHGKNKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQSILTP
                     LYLKDIKDESDKQNKLFAWVYAHEALMENIIELLEAQDKRLKIAILPLQDFLEKKKAL
                     "
BASE COUNT          709 a          322 c          307 g          834 t
ORIGIN      
        1 gtgatggata tagctgaaac agccacaaca aatcttgatc aaatcagagc agacattggt
       61 tcggtgcaaa atcaacttca agtgactata aacaacatta ctgttactca agtaaacgtt
      121 aaagcagctg aatcaaccat aagagatgta gactttgcag ctgaaagtgc aaatttttct
      181 aaatataaca tccttgcgca atcaggttct tatgctatga gtcaggctaa tgcagtgcag
      241 caaaatgttt taaaacttct tcaataattt cttagatgct tttatgcatc taagctttta
      301 aagtgctttt ttcttttcta aaaagtcttg caaaggtaaa atagcgattt taagtctttt
      361 atcttgagct tctaaaagtt ctatgatatt ttccatcaaa gcttcgtgtg cataaaccca
      421 agcaaaaagt ttattttgtt tatcagattc atctttgata tctttaagat ataaaggcgt
      481 taatatactt tgttcatgat gcaaagtagg gcctaaaatt tcttgcaaaa agagatattt
      541 tttatttgaa agtttttctt tgattttgtc tatattttga tttatttgtt caagagagag
      601 tttgttcttt ccatgggtaa gattgtgaat ttgtttttga acttttttac actctttttt
      661 aaaattcaag gataaattca tatttttttt gattttttga tagattttta atccgagttt
      721 tacttgttct ttagtattta aaacttgtaa ttttttaaat tttttatctt ttttattttt
      781 gagtaaatct tcgcaaagtt ctttaaaagg tttttctaca gcgctttcta tcctagcacc
      841 tccttcagtg caattataag ttttactttt gctaaaagca atgaaatttt caaaaatttg
      901 tctaaaaagt gtccaaattt cagaactttg aactttgcca tttcctccat aagctgtagt
      961 gctaaattta tctaagtccc tttcatagtc tccattatgt aaattagcat ggataaaacc
     1021 ttgagagtgt gtttgcccat ctttggcata agctaaatcc tgacctatga gaatgatgtt
     1081 tttatgtcct aaattttcag ccagttcata agccatatga gatacactca tgcccgcgtt
     1141 aatatatcca taatcgtcta gccccaagca tctagcaaaa ggctggcctt ttatgattaa
     1201 catatatttt ctttgatttt tttcaagata agaaatggtt tttttatgca ccaaagaagc
     1261 tactagaaaa atgatgtctt tatcaaaatc tttaaaatca ttattaaaac attcagctac
     1321 tatttcatcg cgttccaaca tacaaacata atcaggcttt atgccatgct tagctaaaat
     1381 aggataagaa gaatccgcac aaaaaatcgt agctttatta gcatattttt ttaataaagg
     1441 aagttgttta gtaagagatg gtcctgtaga aacaatgata gctgtatcac ttataccctt
     1501 tcttttagaa agtaattctt tataactaga atgggtaatc atttgaggaa gattataaac
     1561 aaattgttct ataccttgca tggcatcttt aggatcattt ccacgcataa gattgtgatt
     1621 tttgatgatt tgcatgttga gtttattaag ttttaaaata tcttctttat agtgttcata
     1681 aaaatcatta gcaatgtgta gattataaga acgataaaac aaatccccta tcaaacgaaa
     1741 aactttatcc attttaggaa gattaatatc atcatgatgt aaaataatga gtcgccctaa
     1801 gcttaaatct ttgctaaaat ctatgaaatt taaagccaaa aagataagtt ctaattcttt
     1861 ttcaaagatg attattcttt taagtgcttg attttgaagt agaattttat ataaaattcc
     1921 atttccaaaa ccataaaaaa aaagcacagg atagcgtgta aaatctttaa aatattctaa
     1981 atttttttca agctctttga tgggatcttg atacattttt tttaaatttc ttttttttat
     2041 gatattgata tcaagattat cttttccttg agtgaaagta aattctctaa gctcttttag
     2101 atcctcaagt tttttgcgta agttgttata ctcaaaaccg cttaaagctt ttaaattttt
     2161 gttaaaatta tt
//
LOCUS       DARAII010000199         2125 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.209, whole genome shotgun sequence.
ACCESSION   DARAII010000199 DARAII010000000
VERSION     DARAII010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2125
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.209"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1254
                     /locus_tag="SB143_002044"
     CDS             <1..1254
                     /locus_tag="SB143_002044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEF9750532.1"
                     /translation="TFLAMVYIIPVNSSIVGNTGMPIEALITATALITIVATAFNAFF
                     ANTPVAMSVGMGLNAYFTFAVCLGQKIPWQSALGAVFISSIIFLILSFTPFRLWVIRN
                     IPKDLRLAICAGIGCFIAFLGLSQMGIITPNKDTLVSIGNFKNPHVLFGIFTLILIVF
                     FWAIKLRGAFILGVLISSIIAWIFGIDNASFPKQILSLPNFSSDNGLGAIFLELNIKS
                     ALNITMIPIILTFFITQLFDSIGTITGIGERGKIFDDAKDGEKKLGKTLMADATGSAL
                     GALGGTSTVTAFVESTTGVESGGRTGLTALVVAICFAFTLFLLPLFKAIPANAIYPVL
                     VMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTYSITTGFAFGFLSYLLVRIFKRE
                     WDKINLGIIVLSLISLGNFLLIALQ"
     gene            1272..1715
                     /locus_tag="SB143_002045"
     CDS             1272..1715
                     /locus_tag="SB143_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEF9750533.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALQTRKLFALNSIHYDDTKKLDTIEIFNIPDLSKYKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKVATIFYKKTALLEPEFKVKEAKEWVEFYWDIHID"
     gene            1756..>2125
                     /locus_tag="SB143_002046"
     CDS             1756..>2125
                     /locus_tag="SB143_002046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEF9750534.1"
                     /translation="MKLKLISCILLFSTIFAFANELDLNDFEEEYQSYKVNDPLYGYN
                     KAMTSFNVALYDYSLRPILKGYNAITPEFIRTGVRNFFDNLFAPLRFVGNVLQFKFEE
                     AGEEFKRFSANTIMGFGGIMD"
BASE COUNT          651 a          314 c          383 g          777 t
ORIGIN      
        1 acttttttag ccatggttta tatcattcct gtaaattcaa gcatagtagg caatacaggc
       61 atgccgatag aagctttaat tactgcaact gctttaatta ctattgttgc aactgctttt
      121 aatgcctttt ttgctaatac tccagtagcc atgagtgttg gaatgggttt gaatgcttat
      181 tttacttttg cagtttgctt aggacaaaaa ataccatggc aaagtgcctt aggggcagtc
      241 tttatctcaa gtattatttt tctaatcctt tcttttaccc cctttcgcct ttgggttata
      301 cgcaatatac ctaaagattt gcgcttagcc atttgcgcag ggattggatg ctttatcgct
      361 tttttaggct taagtcaaat gggcattata acgccaaata aagatacttt agtcagcata
      421 ggaaatttta aaaatcccca tgtgcttttt ggaattttta ccctcatttt aattgtattt
      481 ttttgggcta taaaactaag aggggctttt attttaggag ttttaataag ctctattata
      541 gcttggattt ttgggattga taatgcaagt tttcctaagc aaatcctttc tttacctaat
      601 tttagtagtg acaatggctt aggagctatt tttttagaac ttaatatcaa aagtgcttta
      661 aatatcacta tgatacctat tatccttact ttttttatca ctcaactttt tgatagcata
      721 ggcactatca cgggtatagg cgagaggggt aaaatttttg atgatgcaaa agatggagag
      781 aaaaaactag gtaaaaccct tatggcagat gctacaggtt cagctctagg tgcactaggc
      841 ggaacttcga ctgtaactgc ttttgtagaa agtacaacag gggttgaaag tggaggtaga
      901 acaggactta ccgctttagt tgtggctatt tgctttgcct tcacactttt tttgctccca
      961 ctttttaaag ctattcccgc aaatgctata tatcctgtac ttgtaatggt aggaatttta
     1021 atgtttatgg aagttaaaaa tatagacttt aaagacagtg ctattgcagt agctagcttt
     1081 tttactatca ttatgatgcc ttttacttat tcgattacca caggttttgc ctttggtttt
     1141 ctttcttatt tattggttcg aatttttaag agagaatggg ataagattaa tcttggtatt
     1201 atagttttaa gcttaatttc cttaggaaat ttcttactca ttgctttgca ataaaaaaag
     1261 gggggacaaa aatgattttt tattcttatg aagaatttaa agaagatgta aaaattttgg
     1321 ctaaagaaat caaagaagat tttaatcctg atgcactttt agccatagca agaggaggaa
     1381 tgagtttagg acattcttta gcagttgctc ttcaaacacg caagcttttt gctctaaatt
     1441 ctatccacta tgatgataca aaaaaacttg atactattga gatttttaat attcctgatc
     1501 ttagcaagta caaaaaaatt ctactcattg atgatattgt agatagtggg gaaagtttgg
     1561 ctgaaattaa aaaggtttta cttgaaaaat ttccacatat agaacttaaa gttgctacga
     1621 ttttttataa aaaaactgca cttttagaac ccgaatttaa ggtaaaagaa gctaaagaat
     1681 gggttgaatt ttactgggat attcatattg attagaatct gctataataa cggcttttaa
     1741 tcttaggagt tttatttgaa attaaaatta atatcctgta ttttactctt tagcacaatc
     1801 tttgcttttg caaatgagct tgatttaaat gattttgaag aagagtatca aagctataaa
     1861 gtaaatgacc cactttatgg gtacaataaa gcaatgacaa gctttaatgt agctttgtat
     1921 gattatagcc ttcgtcctat tcttaaaggc tacaatgcta tcactcctga atttattcgc
     1981 acgggcgtaa gaaatttttt tgataattta tttgcacccc tacgctttgt aggcaatgtc
     2041 ttgcaattta aatttgaaga agcaggagaa gaatttaaaa gatttagtgc taataccatt
     2101 atgggttttg gtgggattat ggatc
//
LOCUS       DARAII010000200         2104 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.210, whole genome shotgun sequence.
ACCESSION   DARAII010000200 DARAII010000000
VERSION     DARAII010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.210"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(485..943)
                     /gene="ssb"
                     /locus_tag="SB143_002047"
     CDS             complement(485..943)
                     /gene="ssb"
                     /locus_tag="SB143_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEF9750535.1"
                     /translation="MFNQITVIGNICQDIKLSYSQSGVAFLNNAIASSYKYVANDGTV
                     KEEVCYLNFSVFGRLAENMNQYLHKGSKIFLQGRMVQENYTDKEGKNRTNYKIAVETM
                     KFLDSKPTDNNQSGNPYGNVQEPAMPEANQKVQQQVPNNQPRAEGENFPF"
     gene            complement(1462..1911)
                     /locus_tag="SB143_002048"
     CDS             complement(1462..1911)
                     /locus_tag="SB143_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750536.1"
                     /translation="MAKNKNQNENTTQTNEKSNVTTQTNQNSERISRAEFLRRRIEGK
                     KRTIDLNSNAQVFVSDSIAGTEIFSDLRMLDAMDSTIRKLWGNGVDSQDAETWVKEIN
                     SIKESINELQNKGREILVKVGNVRHISNNVLRRTILREIQAQNVKAE"
BASE COUNT          689 a          368 c          277 g          770 t
ORIGIN      
        1 acttataggg cgtgttaagc taaaagctaa agattagctt ttactttcgt tagtgtgttt
       61 gtcgttaaaa tagtgagcta ctaaagccaa tgtaccaaaa ataagagtga tagcaccgat
      121 taaaatagct atatcataac catccattct ctctcctttt ttcaaaaaaa gatcagtcct
      181 taagaaagat cgatgatagc gcaactatcg ccaaaattag caaactttcg atgaggataa
      241 taaaagctct actatcgccc atttgcaaac cataaagact atttacaaat aatcctacgc
      301 caatagattc catgaatctt aaaattgctt ttgtggatat ttttgtaaat atcgatagtt
      361 ttttgaaaaa atctttcata tttcttctcc ttatcttata acaaaaaacg ctaaaagtca
      421 aggggtataa tatcccgtgt tgggataaaa ataccccaac agcgggcttg ttaattattt
      481 agaattagaa aggaaaattc tcaccttctg ctctaggctg attattaggt acttgttgtt
      541 gcaccttctg attagcttca ggcatagcag gctcttgaac attaccataa ggatttcctg
      601 attgattatt atcagtaggt ttgctatcta aaaacttcat agtttcaaca gcaatcttat
      661 agtttgttct attttttcct tctttatctg tataattttc ttgaaccatt cttccttgca
      721 aaaagatttt tgagcctttg tgcaagtatt gattcatgtt ttcggctaat ctgccaaaaa
      781 cactgaagtt taagtagcaa acttcttctt taactgtacc atcattagca acatatttat
      841 agctactagc aatagcatta tttaaaaaag ctacaccact ttgagaatag ctcaacttaa
      901 tatcttggca aatattacct ataactgtaa tttgattgaa catgtgttct cctttaaaaa
      961 aatttattta agacatttgt cttataaaaa caaaagagaa cacgccctaa atagggatat
     1021 tctttttgct tttataaaac aaaaaagaaa tccctaaaaa agggattaaa ttatgctcta
     1081 aaagagcgat gtattcatca agtaaatctg tcatcataat aaatactttg tgtataactt
     1141 caagaataag aaattcttaa ataaaaacac aaagaatatg cttcaccaaa agatgagata
     1201 aaatttgcgt tcttatttaa gaacctttat ccatctaatg gattcctatt cgtttaaatt
     1261 aatacccatg tataaactta ctttgcgttc tacgcaaatc gcaactttgc gtacgccaaa
     1321 ataaacatta aaaggaccaa aatgcttatt tggcagcttt agctcacgct aaagaacgga
     1381 ctatatcttg actgtagtaa aacagccccc tccatttggg ttatcttata taaaaaaatc
     1441 ctttttaccc catttcaaaa actactcagc tttaacattc tgtgcttgaa tttctctaag
     1501 aattgttctt cttaaaacat tattggagat atgtcttaca tttccaactt ttactaaaat
     1561 ttctctacct ttattttgca attcattgat gctttcttta attgaattga tttcttttac
     1621 ccatgtttct gcatcttgag aatcaactcc gtttccccat aattttctta tggttgagtc
     1681 cattgcatct aacattctca aatcagaaaa aatttcagta cccgctatgg aatcactaac
     1741 aaatacttga gcgtttgaat ttaaatcgat agttcttttt ttgccttcga ttcttcttct
     1801 taaaaactct gccctagata ttctctctga attttgattt gtttgagttg taacatttga
     1861 tttttcattt gtttgagttg tattttcatt ttgattttta ttttttgcca tagaatttcc
     1921 ttgtttattt aaatactttg aaagtttaaa ttgaatgaaa tggggtttat taaaaaagat
     1981 ttgaatatat cgcttataac ctactctact tggttctctc atccaaaaaa gatgataccc
     2041 tttcgatagt ctctgaactt tattcatatt taaaacaaat ttgaatttgc agaatttact
     2101 cgtg
//
LOCUS       DARAII010000201         2048 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.211, whole genome shotgun sequence.
ACCESSION   DARAII010000201 DARAII010000000
VERSION     DARAII010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.211"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..519
                     /locus_tag="SB143_002049"
     CDS             <1..519
                     /locus_tag="SB143_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2226 domain-containing protein"
                     /protein_id="HEF9750537.1"
                     /translation="RFIDELGIKESDAEVLISSLEMSRFFESLIALNLNPKLCVNWLN
                     TELMGLLKGELTIENSPVDAIKLGTLIKRIEEGVISAKAAKDVLAHVFENPDMDIDET
                     IEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQTMKEGKGAFNP
                     NKVNEILKAKLG"
     gene            519..1418
                     /locus_tag="SB143_002050"
     CDS             519..1418
                     /locus_tag="SB143_002050"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEF9750538.1"
                     /translation="MSKIAIIGAGKWGSALYSALSINNTCFMTSRTQRDLPYFVSLEQ
                     ALNCEYLVFALSSQGIYSWLKQNFVNKGQKILIASKGIDTSTCKFLDEIFSEFIDRDK
                     LCVLSGPSFAAEVMQNLPCALVVSGIKEELCKKFASFFPDFIKVYTDDDVRGAEICGA
                     YKNVLAIASGISDGLGLGNNARASLISRGLIEMHRFGKFFGAKEETFLGLGGAGDLFL
                     TATSVLSRNYRVGLALAKEKKLDDILQELGEVAEGVKTAYAIAKISKDKAIYTPIVNE
                     IVQILQGKNVKQAVQNLLKTKDN"
     gene            1427..>2048
                     /locus_tag="SB143_002051"
     CDS             1427..>2048
                     /locus_tag="SB143_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEF9750539.1"
                     /translation="MLIKNAKIYGENLQDLLIKDAKIVKIGANLDDNDEVLDAQGMTL
                     LPSFVDLCVNLKNDKFSLSNLELLEKECLRGGVGAIILRDCMDFDEESFSLFLQNLKT
                     RKIQIFPSICALDKQGKLKNLATLFNKGAHALELKSSSNANILRVGMQYALMKEKSIF
                     VKCHDENFDDNGVMNDCETGFELGLAGMSAVAESSEVAKIQEIAKFY"
BASE COUNT          690 a          239 c          455 g          664 t
ORIGIN      
        1 cgctttatag acgagcttgg tataaaagaa agtgatgctg aggttttaat cagttcttta
       61 gaaatgagtc gtttttttga aagtttgatt gctttaaatt taaatcctaa gctttgtgta
      121 aattggttaa atactgaact tatgggactt ttaaaagggg aattaacgat agaaaattcc
      181 ccagtagatg cgatcaaact tggtacctta atcaaacgca tagaagaggg tgtgatcagt
      241 gcaaaagcag caaaggatgt tttagctcat gtttttgaaa atccagatat ggatattgat
      301 gaaacgattg aaaagttagg gcttaagcag gttagcgatg attcagctat cgaagcagta
      361 attgagcaaa ttttaaatgc caatgctgat aaggttgcag agtataaaag cgggaaggat
      421 aagctctttg gtttctttgt agggcagact atgaaagaag gtaagggagc ctttaatcct
      481 aacaaggtca atgaaatttt aaaagcaaag ttgggctgat gagcaaaatt gcaatcatcg
      541 gcgcaggaaa atggggcagt gctttataca gtgctttaag tattaataat acttgtttta
      601 tgacttctcg cacacagcga gatttgcctt attttgtgag tttagagcag gctttgaatt
      661 gtgaatattt ggtttttgct ttaagctctc aaggaattta ttcttggctt aaacaaaatt
      721 ttgttaacaa gggtcaaaaa attcttatcg cttctaaggg tatagatact tcaacttgta
      781 agtttttaga tgaaattttt agcgaattta tagatagaga taagctatgt gttttaagcg
      841 gtccttcttt tgcagccgaa gtaatgcaaa atcttccttg tgctttagtt gtaagtggga
      901 taaaagaaga attatgtaaa aaatttgcaa gtttttttcc agattttatt aaagtatata
      961 cagatgatga tgtgcgcggt gctgaaattt gtggcgctta taaaaatgtt ttagccattg
     1021 ctagcggtat aagcgatggt ttaggacttg gaaataatgc aagggcttct ttgatttcta
     1081 gaggtcttat tgaaatgcat cgttttggta aattttttgg agctaaggaa gaaactttct
     1141 tggggcttgg gggcgcagga gatttatttt taactgcaac tagtgtactg tcaagaaatt
     1201 atcgcgtggg tttggctttg gcaaaagaaa aaaaactcga tgatatttta caggaattag
     1261 gtgaggtggc agagggggta aaaacagcct atgctatagc aaagatttca aaagataaag
     1321 caatttatac acctattgta aatgaaatag tacagatctt gcaaggaaaa aatgttaaac
     1381 aagcagtaca aaatttatta aaaacaaagg ataattagga gtttcaatgc tgattaaaaa
     1441 tgctaaaatt tatggtgaaa atttacaaga tcttttaatt aaagatgcaa agatagtaaa
     1501 aataggcgca aatttagacg ataatgatga agtattggat gctcaaggaa tgactttatt
     1561 gccatctttt gtagatttgt gcgtcaattt aaaaaatgat aaattctccc taagcaatct
     1621 agaactttta gaaaaggagt gtttaagagg aggggttggt gctataatct tgcgtgattg
     1681 catggatttt gatgaagaaa gcttttcgct ttttttgcag aatttaaaaa ctagaaagat
     1741 tcaaattttt ccaagtattt gtgctttaga caaacaaggt aagcttaaga atttagctac
     1801 gctttttaac aaaggtgcac atgctctaga acttaagagt tcgagtaatg caaatatttt
     1861 gcgtgtaggt atgcaatatg ctttaatgaa agaaaaaagt atttttgtaa aatgtcatga
     1921 tgagaatttt gatgataatg gcgtgatgaa tgattgtgag acaggttttg aattaggtct
     1981 tgcaggcatg agcgcagtag ctgaaagtag tgaagtagca aagattcaag aaatagctaa
     2041 attttatg
//
LOCUS       DARAII010000202         1997 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.212, whole genome shotgun sequence.
ACCESSION   DARAII010000202 DARAII010000000
VERSION     DARAII010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1997)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1997)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1997
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.212"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            319..643
                     /locus_tag="SB143_002052"
                     /pseudo
     CDS             319..643
                     /locus_tag="SB143_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935644.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            762..1988
                     /locus_tag="SB143_002053"
     CDS             762..1988
                     /locus_tag="SB143_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEF9750540.1"
                     /translation="MPQKRIYLYVPFKDKEKAKSLGAMWDDKEKKWFAPKTLDKNIFS
                     QWLYPHQKKEFSFDENEVLTAFKSALENQGLIIEGLPIMDGKIHRVKTTNDKGRELSG
                     AYSGFLDDYPAGFVQNFKTGIKENWKMPIEKNQSNNIKNSQKLHEQIKKDQELREKEI
                     LTLQEKTALKLEDEYNNAKWANSNHAYLKKKGFDENFYLKQDKMGSLLIPLKDENGKL
                     WSVQRIFPNGDKIIGVIKTQEEKDQGVEYLAKKQGCFHIIGAKSLEHCKEFIITEGFA
                     TAATIYKALNKPVIMGVDAGNLSKIVETLKNKFENTPITLIADNDKKRELKGLSNVGV
                     ETAKEIQQRFSDIKVIIPKISDQEAGQGVSDFNDIFLNKGLDEVKKQLNFIDFHNKLK
                     AFKSMEKTQPEKEITR"
BASE COUNT          869 a          248 c          307 g          573 t
ORIGIN      
        1 gaactatttt ctcaaataag attatcttct tataataatg atattgtcaa gcactatgat
       61 aatcttaagt gtgttggaaa aattactcca aaacttgcta cattagaaat tattcttaga
      121 aataaattag ataataaatt atcagagaaa gataatgatt ggataaaaaa ctctaatgat
      181 gaaaagatta aaaaatccaa agaagaaatt gagcataggg aaaaaaatag aattttatct
      241 catcatcaat atctttctcg tataagttta ggaactatca ttcatctcat caaagaaaat
      301 aaattacaaa actctataat ggatttaaaa aatatcaatt ttagaaacta caatcaatac
      361 aatagaaatt tcttttttga aaatggcata aaattacgct ttagaaatac gcataaagtt
      421 gatattgttc ttagcttatt acaaaatcta agaaatagaa gttatcattg ggaaaatatt
      481 ttaaaaacaa cagaaaaaaa tggcaaacat tacccaagat taacaacaaa gattaacaac
      541 aaagattaaa aacacacata taggagtaga tccgcaaaaa atagattttt tcttaagtga
      601 tttaattaaa acttttaacg aaaaaatttt ggaatattgt taagattaaa aaatgggaca
      661 caaggagtcc ctcgaattta aaaggtgggc tactaggaag ccctttgaat ttcattgtaa
      721 ttatactgac aaaacattaa acaaagttaa aaggatatgc aatgccacaa aaaagaattt
      781 atctttatgt tccatttaaa gacaaagaaa aagcaaaatc attaggggca atgtgggatg
      841 ataaagaaaa aaaatggttt gctccaaaaa ccttagataa aaatattttc tcacaatggc
      901 tttatccaca ccaaaaaaaa gaattttcat ttgatgaaaa tgaagtctta acagctttta
      961 aatctgcttt agaaaatcaa ggtttaatta ttgaaggctt acctatcatg gatggtaaaa
     1021 ttcatagagt aaaaactact aatgataaag gtagagaatt aagcggtgcc tatagcggtt
     1081 ttttagacga ttatcctgca gggtttgtgc aaaattttaa aacaggcatt aaagaaaatt
     1141 ggaaaatgcc catagaaaaa aatcaaagca ataatataaa aaattctcaa aaattacatg
     1201 agcaaataaa aaaagatcaa gagcttagag aaaaagagat tttaactttg caagaaaaaa
     1261 ccgctttaaa acttgaagat gagtataata atgcaaaatg ggctaattct aatcacgctt
     1321 atttaaagaa aaaaggcttt gatgaaaact tttatcttaa acaggataaa atgggttctt
     1381 tgcttattcc tttaaaagac gagaatggaa aattatggtc tgtgcaaaga atatttccaa
     1441 atggagataa gatcatagga gtcattaaaa ctcaagaaga aaaagatcaa ggcgtagaat
     1501 atcttgcaaa aaaacaaggt tgctttcata taataggtgc aaaaagcttg gaacattgca
     1561 aagaatttat cataacagaa ggctttgcta ctgctgcaac tatatacaag gcacttaata
     1621 agcctgtgat aatgggtgtt gatgctggaa atttatcgaa aattgttgaa accctaaaaa
     1681 acaaatttga aaatactcct ataactttaa tagcagataa tgataaaaaa agagaattga
     1741 aaggtctttc taatgtcggc gtggaaactg caaaagaaat tcagcaaaga ttttcagata
     1801 ttaaagttat tattccaaaa atcagcgatc aagaagcggg acaaggcgtg agtgatttta
     1861 atgatatctt cttaaacaaa ggacttgatg aagtcaaaaa acaattaaat tttattgatt
     1921 ttcataacaa gcttaaagct tttaaatcta tggaaaaaac acaacctgaa aaagagataa
     1981 ctagataata atagtta
//
LOCUS       DARAII010000203         1994 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.213, whole genome shotgun sequence.
ACCESSION   DARAII010000203 DARAII010000000
VERSION     DARAII010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.213"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..336
                     /gene="hisH"
                     /locus_tag="SB143_002054"
     CDS             <1..336
                     /gene="hisH"
                     /locus_tag="SB143_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEF9750541.1"
                     /translation="DFSEELDQETLGIIPFKTQKFELPKEYSLPHMGWNEVASSHPLF
                     KGLNGAYFYFVHSYHVALNDYTIATSDYGVKFSASLAKDNFYGVQFHPERSGEAGEIL
                     ISNFIKDIA"
     gene            333..1061
                     /gene="hisA"
                     /locus_tag="SB143_002055"
     CDS             333..1061
                     /gene="hisA"
                     /locus_tag="SB143_002055"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEF9750542.1"
                     /translation="MIIPALDLIDGQVVRLVKGDYEQKKVYKYDPLEKFREYENAGAT
                     WLHLVDLSGAKDPNKRQLALIEKLTNEVSVNLQVGGGIRTKEEIQALLDCGVKRVVIG
                     SLAITNPTLCVEILQHFGSEAIVLALDTILKEDYMIAINAWQDTSDKRLLEVLEFYNI
                     KGLKHILCTDISRDGTMQGSNAELYALIHKNFPKIHTQASGGVASLEDLKKLKGICSG
                     VIVGKALLDGVFSVEEGIKCLQNA"
     gene            1043..1810
                     /gene="hisF"
                     /locus_tag="SB143_002056"
     CDS             1043..1810
                     /gene="hisF"
                     /locus_tag="SB143_002056"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEF9750543.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIVELAKRYSQSGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPNLITRLAKSFGVQCVVVGIDSFKDENGNLKVFKYTGDENTSKHSGKNTIE
                     WIKEVQDLGAGEIVLNMMNQDGVKNGYDLEQLSLVKKECKVPLIASGGAGKMEHFLEA
                     FEIGVDGALAASVFHQQIIDIKELKNYLKTRGVSIRI"
     gene            1813..>1994
                     /locus_tag="SB143_002057"
     CDS             1813..>1994
                     /locus_tag="SB143_002057"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="catalyzes the formation of 1-(5-phosphoribosyl)-AMP
                     from 1-(5-phosphoribosyl)-ATP and the subsequent formation
                     of
                     1-(5-phosphoribosyl)-5-((5-
                     phosphoribosylamino)methylideneamino)imidazole-4-
                     carboxamide from 1-(5-phosphoribosyl)-AMP in histidine
                     biosynthesis; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase"
                     /protein_id="HEF9750544.1"
                     /translation="MQNFQNLNEKINWQKVNGLIPVIIQDAKSCEVLMLGFMDEKALE
                     KSLESKKVVFFSRTKNR"
BASE COUNT          726 a          272 c          429 g          567 t
ORIGIN      
        1 gatttttcag aagaactaga tcaagaaact ctaggcatta taccttttaa aactcaaaaa
       61 tttgaacttc caaaagagta ttctttaccg cacatggggt ggaatgaagt tgcaagctca
      121 cacccacttt ttaagggttt aaatggggct tatttttatt ttgtacacag ttatcatgta
      181 gcattaaatg actataccat agctacaagt gattatgggg taaaatttag cgcaagttta
      241 gcaaaagata atttttatgg cgtacaattt caccctgaaa gaagcggaga agcgggggaa
      301 attttaatat caaatttcat taaggatata gcatgataat ccctgcactt gatttgatcg
      361 atggacaagt agtgcgcctt gttaaaggtg attatgaaca aaaaaaagta tacaaatacg
      421 atcctttaga aaaatttaga gaatatgaaa acgcgggagc aacttggctt catttagtgg
      481 atttaagcgg agctaaagat ccaaataaaa gacaacttgc tttaatagaa aaattaacaa
      541 atgaagtcag tgttaatttg caagtaggcg gtggaattcg caccaaagaa gagatacaag
      601 ctttgcttga ttgtggagta aagcgtgtag tgatcggctc tttggcaatt acaaatccta
      661 cgctttgtgt tgaaattttg caacattttg gaagcgaagc tatcgtttta gcgcttgata
      721 cgattttaaa agaagattat atgatagcta ttaacgcttg gcaagatacg agcgataaaa
      781 gacttttaga ggttttggaa ttttataata tcaaaggcct aaaacacata ctttgcaccg
      841 atatttcaag agatggcacc atgcaaggaa gcaatgctga actttacgca ctcatccata
      901 aaaactttcc taaaattcac actcaagcaa gtggaggtgt agcgagttta gaagatctta
      961 aaaaactaaa gggtatttgt agtggggtta tcgtaggaaa agctttatta gatggagttt
     1021 ttagcgtaga agaagggata aaatgcttac aaaacgcata attgcatgtt tagatgtaaa
     1081 agatggtaga gtagtaaaag gaacacagtt taaaaatcat aaagatatgg gagatatcgt
     1141 agagcttgca aagcgttatt ctcaaagtgg gatcgatgag cttgtgtttt atgatattgc
     1201 tgcaagtgct agaaaagaac gcatttcaag agaatgggta agcgaagtgg ctaaaaatat
     1261 caatatccct ttttgtgtag caggcggcat taaaagtgaa gaagatgcag ccgaactctt
     1321 agccaatgga gcggataaaa tttctatcaa ctcccctgct ttaaacgatc caaatcttat
     1381 cactcgtttg gccaaaagtt ttggggtaca atgtgttgta gtgggcattg atagctttaa
     1441 agatgaaaat ggaaatttaa aggttttcaa atacacaggt gatgaaaaca cgagtaaaca
     1501 tagcgggaaa aatacgatcg agtggattaa ggaagtacag gatttgggcg ctggagagat
     1561 agtgctaaat atgatgaatc aagatggtgt taaaaatgga tatgatttag aacaattaag
     1621 ccttgtaaaa aaagaatgca aagtaccttt gatcgcaagc ggtggagctg gtaagatgga
     1681 acacttttta gaagcctttg aaataggagt ggatggggct ttagcagctt ctgtttttca
     1741 tcaacaaatc attgatatta aagaattaaa aaactactta aaaacccgag gtgtaagtat
     1801 aaggatataa aaatgcaaaa tttccaaaat ttaaatgaaa aaatcaattg gcaaaaagta
     1861 aatgggctta tccctgtcat aatacaagat gcaaaaagct gtgaagtttt aatgctaggt
     1921 tttatggatg aaaaagcttt agaaaaaagc ttagaaagta aaaaagtcgt atttttttcg
     1981 cgtactaaaa atcg
//
LOCUS       DARAII010000204         1974 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.214, whole genome shotgun sequence.
ACCESSION   DARAII010000204 DARAII010000000
VERSION     DARAII010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1974)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1974)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1974
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.214"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..471
                     /locus_tag="SB143_002058"
     CDS             <1..471
                     /locus_tag="SB143_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HEF9750545.1"
                     /translation="EKKQIQKEYLALASGEIKVNFIVDQAMDLTKDYDDVKTRMQICE
                     NGKKAITEFEVLSFYPKLNATLLLCKPLTGRQHQIRVHLFYKNHKILGDPLYGLEKKD
                     IEKILDDKMDIEERIKLSGAKRLCLHSYRLKFNYNGENFDIFSKKGMEKILAAF"
     gene            592..1458
                     /locus_tag="SB143_002059"
     CDS             592..1458
                     /locus_tag="SB143_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEF9750546.1"
                     /translation="MKFVNFKFNQKATLGVFNSSGKVVNLADLDINVRDMNELIINFD
                     EFKHKFKDLDSKTAYEIPKEDYLAPIIEPRQDIICLGINFLDHAKESAQFKGEKFEER
                     EYPVYFGKRCNQATAPFGSISLHADVTSQLDYECELAFILSKDAYKIKAEDAKDYIFG
                     YTIINEISARDLQKRHKQFYRAKSLEGSTIMGPYITSVDEIAYPPELHLKSYVNKELR
                     QNSNTKFFIFDIGYVLEELSSGMLLKAGTIISMGTPSGVGMGLNPPVFLKKGDEVRCV
                     IENLGEICNIIS"
     gene            1506..1673
                     /gene="dba"
                     /locus_tag="SB143_002060"
     CDS             1506..1673
                     /gene="dba"
                     /locus_tag="SB143_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEF9750547.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            1688..>1974
                     /locus_tag="SB143_002061"
     CDS             1688..>1974
                     /locus_tag="SB143_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HEF9750548.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANFVFGYMLGDSPCTL
                     CWGQREAMIFIGVIALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAH"
BASE COUNT          717 a          281 c          340 g          636 t
ORIGIN      
        1 gaaaaaaaac aaattcaaaa agaatacctt gcccttgcaa gtggagaaat taaagtaaat
       61 tttatagtcg atcaagcgat ggatttaaca aaagattatg atgatgttaa aactagaatg
      121 caaatttgtg aaaatggaaa aaaagcaatc acagagtttg aggttttgag cttttatcct
      181 aagctcaatg ctacactttt gctttgcaaa ccactcacag gcagacaaca ccaaattaga
      241 gtgcatttat tttataaaaa ccataaaatt ttaggcgatc cactctatgg ccttgaaaaa
      301 aaagatatag aaaaaatttt agatgacaaa atggacatag aagaacgcat aaaactaagc
      361 ggtgctaaac gcttgtgttt gcattcttat cgtttaaaat ttaactataa cggagaaaat
      421 tttgatattt tttcaaaaaa gggtatggaa aaaattttag cagcatttta aaataaaggc
      481 gatacttcat atctaacaag ctatcatttt taataaaaat ttttaaaata aaaatttact
      541 ttttgttaaa aatttagtat aatcaaaaaa taaaaatata ggattttata aatgaaattt
      601 gttaatttta aatttaatca aaaagctact ctaggggtgt ttaactcaag tggaaaggtc
      661 gtaaatttag ccgatcttga tatcaatgtt cgtgatatga atgaattgat tataaatttt
      721 gatgaattta aacataagtt taaagattta gactctaaaa cagcttatga aattccaaaa
      781 gaagattatc tagctcctat catagaacct cgacaagata tcatatgtct tgggatcaat
      841 tttttagatc atgccaaaga atctgcacaa tttaaaggcg aaaaatttga agaaagagaa
      901 tatcctgtat attttggaaa acgctgcaat caagccacag ctccttttgg cagcatatct
      961 ttacatgctg atgttacttc tcaattagac tatgaatgcg agcttgcttt cattttaagt
     1021 aaagatgctt ataaaatcaa agctgaagat gcaaaggatt atatttttgg ttataccatc
     1081 atcaatgaaa tttcagcacg agatctccaa aaacgccaca agcaatttta ccgcgcaaaa
     1141 agccttgagg gaagtactat catggggcct tatatcacaa gtgttgatga gattgcttat
     1201 ccacctgaac ttcatttgaa aagttatgtc aataaagaat tacgacaaaa ctccaataca
     1261 aaatttttta tttttgacat cggatatgtc ttagaggaac taagctcagg aatgctctta
     1321 aaagccggta ccatcatatc aatgggaacc ccaagcggtg taggaatggg tttaaatccg
     1381 cccgtttttc ttaaaaaagg tgatgaagta cgctgtgtaa tagaaaattt aggagaaatt
     1441 tgtaatataa tatcataaac tcttattaaa acaattttta ataagttcaa tcaaaaggag
     1501 aaattatgga gttcttagag cttttattag ttttaatcgc cttgatactg attatcaaaa
     1561 aaccagaaaa agaaaatttg gcttttggtt tggtaatggt agcttggctt ttaatggttt
     1621 ttttctatgt tggccacaaa acaggtgcgc ttttaacgat aatgaatctg taaagaaagg
     1681 ctagagaatg aacgaaataa ataaaacaaa aaatttctac actcttatgt gtttagcagg
     1741 ctttttgatt attcttttgc ctgtagggat tgcaaatttt gtatttggtt atatgttggg
     1801 tgatagccca tgcactcttt gttggggaca aagagaagcg atgattttta tcggagttat
     1861 agcacttttt atcgtgcgtt atggtatgaa aggcaaatac cttgccgctc ttttaatcat
     1921 gactgcagta ggtctttatc agtcttttgc acattatggc aatcacgctc atag
//
LOCUS       DARAII010000205         1967 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.215, whole genome shotgun sequence.
ACCESSION   DARAII010000205 DARAII010000000
VERSION     DARAII010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1967
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.215"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(1..687)
                     /locus_tag="SB143_002062"
                     /pseudo
     CDS             complement(1..687)
                     /locus_tag="SB143_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            779..1477
                     /gene="pseF"
                     /locus_tag="SB143_002063"
     CDS             779..1477
                     /gene="pseF"
                     /locus_tag="SB143_002063"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEF9750549.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EVILSSDDEEIIKVALKYGVKVPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAAAEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAFHDAGAFYFGTSKAWLEEDFMFKPHSSVFVLPRNLVCDIDTMQDLE
                     FAKILYKANHESAF"
     gene            1461..>1967
                     /gene="pseG"
                     /locus_tag="SB143_002064"
     CDS             1461..>1967
                     /gene="pseG"
                     /locus_tag="SB143_002064"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEF9750550.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRNLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYSKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDI"
BASE COUNT          690 a          307 c          310 g          660 t
ORIGIN      
        1 tataaatcaa aggtggaaca gccgaacctg aattatcaat cacaccatcc acataccaag
       61 gagctatctt tgctatgagt aaagataggt atcctccata agaccccccc cataaatttt
      121 tggtaaatct gcaagttttg gaaagcgttt aactagatct tttaaagcat tgatatgatc
      181 aatagctgcc ataatgccaa aattttgata ttctccatta ggcgggataa aagttgaggt
      241 gaatttcgct tgataatttt gcgctagttt tctttgtgat tttaaagtag taatattctg
      301 attaagtaat tcataacatt gttgtgcgtt ctcaagatta acattgatat taacacctat
      361 ttccaataaa gcctgagata aatttgacac atcatctttt gtaaacattg taaaagcact
      421 atatttctca acatctgaac gcctttggca aaaacaatga taaaaaacat gcactgctac
      481 aacatcaaaa tttttagcaa tataatttct ataagagtct aaaaaatata tatttgcatt
      541 ggctccataa cctcctatta taaaaactat agctttaatc tctttttcat catcataact
      601 tatacggtat tcaagtttgc tagttctttt tatatttaat tctacatcat cacaagaatc
      661 gatttcaaag gtttgattta tgagcattat tccaccctat ttgcattatt ttattgtatt
      721 ttaaagacaa ttatacttaa attttagtaa aataaaacac aaaaaacaag gcttagctat
      781 gaaaaatctt tgcatcatcc ctgctcgtgg tggatcaaaa agaattccta gaaaaaatat
      841 cattgatttt ctaggtaaac ctttaatcgc ttatagcata gaaaatgctt taaattcagg
      901 tatttttgac gaagtaatac tttcaagcga tgatgaagaa atcataaaag tagccttaaa
      961 atacggtgta aaagttccat ttgtgcgtga taaaaattta agcgatgatt atgcttcaag
     1021 cactgctgta gtgcaaaatg ccatagaaat tttacaaagc caaaatcaaa tttatgatca
     1081 tgtctgctgc ctttatgcta ctgctccttt gttaaacaaa gacattttga aacaagccta
     1141 tgaaaaattt atccaaaatc aaagcaaatt tttatttgct gccgctgagt ttgagtatcc
     1201 tatacaaagg gctttttatc taaatgagaa caatcaagtt tatatgtttg atgaaaaaca
     1261 ttataaaagc cgctcacaag acttaacaaa agcttttcat gatgcaggag ctttttattt
     1321 tggtacaagt aaagcttggc ttgaagaaga ttttatgttt aaacctcatt ctagtgtatt
     1381 tgtattgcca agaaatttag tttgtgatat agataccatg caagatttag aatttgcaaa
     1441 aatactttat aaggcaaatc atgaaagtgc tttttagaag cgatagctcc agtcaaatag
     1501 gctttggaca cattaaacgc aatctagtct tagctaaaca atatagcgat gtaagttttg
     1561 cttgtttgcc tttagaaggc tctttgatcg atgaaattcc ttatcctgtt tatgagctta
     1621 gtagcgaaag tatctacgag cttatcaatc tcatcaaaga agaaaaattt gaacttctaa
     1681 tcatcgatca ctatggcatc agtgtagatg atgaaaagct gatcaaactt gaaacagggg
     1741 tgaaaattct aagctttgat gatgaaataa agcctcatca ttgtgatatt ttactcaatg
     1801 tcaatgctta ctcaaaagca agtgattatg aaggtttagt gccttttaaa tgcgaagtaa
     1861 gatgtggttt ttcttatgct ttaatcaggg aagaatttta tcaagaggcc aaagaaaata
     1921 gagaaaaaaa atatgatttt ttcatttgca tgggtggaac tgatata
//
LOCUS       DARAII010000206         1939 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.216, whole genome shotgun sequence.
ACCESSION   DARAII010000206 DARAII010000000
VERSION     DARAII010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.216"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..223)
                     /locus_tag="SB143_002065"
     CDS             complement(<1..223)
                     /locus_tag="SB143_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirB3 family type IV secretion system protein"
                     /protein_id="HEF9750551.1"
                     /translation="MEKNPLFKGLTRPPMIFGVPMTPFVIAMGSIILVAFYSQNIFLV
                     GFSIPVFFIMKAMTKKDDFIFRLMFLKMRF"
     gene            complement(236..499)
                     /locus_tag="SB143_002066"
     CDS             complement(236..499)
                     /locus_tag="SB143_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HEF9750552.1"
                     /translation="MKIKLLSLILLSPIFVFAAGGIDKVNTFMENLSTALYALGAVLL
                     TIAFMWGGSKIMFQGQTLREVAPIFIGGVIFGSASAIAGYIIT"
     gene            669..992
                     /locus_tag="SB143_002067"
     CDS             669..992
                     /locus_tag="SB143_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750553.1"
                     /translation="MAYPLLGTRIVLDEEKILKEGKYNLEDMYKMIDEYAKESGMIKI
                     NKETYHCKGDKYDLGCMALFIYKYLIDSEWFTKNAKEWIWISEKEGNSDLISASKAEG
                     EGIWE"
     gene            983..1390
                     /locus_tag="SB143_002068"
     CDS             983..1390
                     /locus_tag="SB143_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vapd"
                     /protein_id="HEF9750554.1"
                     /translation="MGINRKAINFDLSTKSLEKYFKDTREPYSLIKKFMLENGFEHRQ
                     YSGYTSKEPIDERRVARIVTKLAKKFTWFGECVKEFDITEIGEQYSLKDTIQNLCIKE
                     INKQAGYNKDFHGKFKEFTQKTPKNQKLKDLER"
     gene            1387..>1939
                     /locus_tag="SB143_002069"
     CDS             1387..>1939
                     /locus_tag="SB143_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEF9750555.1"
                     /translation="MNIAYIRVSTNKQELDSQKLEIMEYCHKNNIILDEILEVKISST
                     KSQEKRKIKDLKQRLQSGDLLIATELSRLGRSMLEIINLVLEFNANNINFLFLRQREL
                     SNFNNPSSKLILSIYAYLAENERDLISQRTKAGLENAKASGKKLGRPKGSLNSIYDKD
                     IDKIQTLLDKDLSIRSIWKLFYKD"
BASE COUNT          807 a          239 c          297 g          596 t
ORIGIN      
        1 aaaatctcat ttttaaaaac attaatcgaa aaataaagtc atcttttttt gtcattgctt
       61 tcataatgaa aaaaacagga atagaaaagc caactaaaaa aatgttttga ctataaaatg
      121 caactaaaat aatacttccc attgctataa caaaaggtgt catcggaacg ccaaaaatca
      181 tagggggacg cgttaagcct ttaaaaagtg gatttttctc catagctagt cctatttatg
      241 taatgatata accagctatt gccgaagctg atccaaaaat aacaccgcca atgaaaatag
      301 gtgcaacttc tctaagggtt tgcccctgaa acataatttt agatccaccc cacataaatg
      361 caattgtgag tagcacagct ccaagtgcat acaaagcagt gcttaaattt tccataaagg
      421 tattaacttt gtcaatacca ccagccgcaa atacgaatat agggcttaat aaaattaacg
      481 acaataattt tattttcatt ttatatcctt tattaaaaaa attgttcgtt aaattttagt
      541 tttattatta gttaaaaaaa taatttaatt tttgttttgt aattagatta atattattca
      601 aaagctttta tttaagtatc agttattttt tactagaatt tattagattt ttaatgaaag
      661 gataaaaaat ggcatatcca cttttaggca caagaatagt tttagatgaa gaaaaaattt
      721 taaaagaagg caaatataat ttagaagata tgtataaaat gatagatgaa tatgccaaag
      781 aatcaggaat gataaaaatc aacaaagaaa cttatcattg caagggagat aagtatgatt
      841 tgggctgtat ggctttattt atatataaat atttgattga ttctgaatgg tttacaaaaa
      901 atgcaaaaga atggatttgg attagtgaaa aagaaggaaa tagcgatttg atttctgcaa
      961 gtaaagccga aggagaagga atttgggaat aaatcgcaaa gcaattaatt ttgatttatc
     1021 tacaaaaagt cttgaaaaat attttaaaga cacaagagaa ccctattctt tgattaaaaa
     1081 atttatgctc gaaaatggtt ttgagcatag acaatattca ggttatactt caaaagaacc
     1141 aatagatgaa agacgagttg ctagaatagt tactaaactt gctaaaaaat ttacttggtt
     1201 tggcgaatgt gttaaagaat ttgatattac tgaaatagga gagcaataca gcttaaaaga
     1261 tactatacaa aatctatgta tcaaagaaat taataaacaa gctggttaca ataaggattt
     1321 tcatggcaaa tttaaagaat ttactcaaaa aacaccaaaa aatcaaaagt taaaagattt
     1381 agaacgatga atatagcata tattagagta tcaacaaata aacaagaatt agattctcaa
     1441 aagttagaaa ttatggaata ttgtcataaa aacaatatca ttttagatga aattttagaa
     1501 gtaaaaataa gctctacaaa atctcaagaa aaacgaaaaa tcaaggattt aaaacaaaga
     1561 ttacaatcag gcgatttatt aatagcgaca gaactttcaa gacttggtag aagtatgcta
     1621 gaaataatta atttggttct tgaatttaat gcaaataata ttaattttct atttttaaga
     1681 caaagagaac tcagcaattt taacaatcct tcttcaaaac tcattctgtc aatttatgct
     1741 tacttggcgg aaaatgaaag ggatctgatc agccaaagaa caaaagcagg acttgaaaat
     1801 gctaaggcta gtggtaaaaa actaggacgc ccgaaagggt cattaaatag tatttatgat
     1861 aaggatatag ataaaataca aactttgctt gataaagatt tatctatcag aagcatttgg
     1921 aaattatttt ataaagata
//
LOCUS       DARAII010000207         1939 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.217, whole genome shotgun sequence.
ACCESSION   DARAII010000207 DARAII010000000
VERSION     DARAII010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.217"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            1..230
                     /locus_tag="SB143_002070"
                     /pseudo
     CDS             1..230
                     /locus_tag="SB143_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804092.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(277..1377)
                     /locus_tag="SB143_002071"
     CDS             complement(277..1377)
                     /locus_tag="SB143_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEF9750556.1"
                     /translation="MLLTYKYKLYKTKKTKHIDELINIACSIYNHCIALHKRYYKLYH
                     KSLNKARLQKHLTKLKKLDKYKHWNKLGSQAIQQITERIDNAYKKFFKRLGGLPSFKK
                     RIKYKSFTLKGNVGYKIKDNIISLNGYDYKFSKNQVIKANDKIKTITIKRDNLGSFYI
                     CVSLETNAKNRITTGKSVGIDFGLKTFLTLSDNTTINSPLIYLKSLKELKAKQRKLSS
                     KKKGSNNRAKAKLELAKFHIKLANKRKDYFFKIANDLSKKYDNVFIEDLNLKAMAKIW
                     GRKMNDLAFNEFINILATKTNVVKIDKFYPSSKTCSCCGYIKNDLNLKDRIFDCPNCN
                     SKIDRDYNASLNIYRVGASTLSGEFVRPTKVG"
     gene            complement(1355..1810)
                     /gene="tnpA"
                     /locus_tag="SB143_002072"
     CDS             complement(1355..1810)
                     /gene="tnpA"
                     /locus_tag="SB143_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000063684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS200/IS605 family transposase"
                     /protein_id="HEF9750557.1"
                     /translation="MKNIKYKSNNNIVYSCKYHIIWCPKYRRKVLVGEVEARLKEIVL
                     QIASEMNVEIIEMETDKDHIHILADIDPSFGVMKFIKTAKGRSSRILRNEFPFLKSRL
                     PTLWTNSCFISSVGGAPLEVIKQYIENQQISERSKQKQKWKNYVANLQI"
BASE COUNT          647 a          278 c          249 g          765 t
ORIGIN      
        1 atttattttt aaatactaat aaaataacag atattgccaa gggattttat acaaatagaa
       61 aaattgatgc tgatgagtat ataaaaagat tttcaatgca agaaagcaaa attaataagg
      121 tggcaaacgc tatttctatg ttaagcgata agaatattga cataatggaa aagtatgcaa
      181 aaaaacttga aaaagattta aaatatcaat acttgaaaaa ggtggaaatg acatactccc
      241 cacgcataaa tgcgggggtt tctagtatca acaaatctag cctacttttg taggtcttac
      301 aaattctcca ctaagagttg atgccccaac tctataaata tttaaactag cattataatc
      361 cctatctatc tttgaattgc aattaggaca atcaaagatt ctatctttaa gatttaaatc
      421 attttttata tatccacaac aactacaagt cttagaacta ggatagaatt tatcaatctt
      481 aacaacattt gttttagttg ctaagatatt tataaattca ttaaatgcta aatcattcat
      541 ctttctgccc caaattttag ccatagcttt taaattcaag tcttcaataa aaacattatc
      601 atatttctta gacaaatcat ttgcgatttt aaagaaataa tcttttcttt tatttgctaa
      661 tttaatatga aattttgcta attctaattt agcctttgct ctattatttg agcctttttt
      721 ctttgagcta agttttcttt gtttagcttt tagttctttt agagatttga gataaattaa
      781 aggcgaattt atagtcgtgt tatcgctaag tgttaaaaat gttttaagtc caaaatctat
      841 acccacgctt ttacctgttg tgatacgatt tttagcattt gtttccaagc taacacaaat
      901 ataaaaagag cctaaattat ctctcttaat ggttatagtt tttattttat cattagcttt
      961 tatcacttga tttttgctaa atttataatc atagccgtta agagaaataa tattatcttt
     1021 tattttataa cctacatttc cttttagagt gaatgactta tatttgatac gctttttaaa
     1081 gctaggtaat ccaccaagac gcttaaaaaa tttcttataa gcattgtcta tcctttcggt
     1141 gatttgttgg attgcttgtg agcctaattt attccaatgt ttatatttat caagtttttt
     1201 aagtttagtg agatgttttt gaagtctagc tttattaagg cttttgtgat aaagcttata
     1261 gtatctttta tgcaaagcaa tacaatgatt ataaatacta caagctatat ttataagctc
     1321 atctatatgc ttagtctttt tggttttata aagcttatat ttgtaggtta gcaacatagt
     1381 ttttccattt ttgtttttgt ttagagcgtt cgctgatttg ctgattttca atatattgtt
     1441 tgataacttc tagcggtgct ccaccgactg atgatataaa acaagaatta gtccataaag
     1501 taggcaatct tgattttaaa aaaggaaact catttcttaa aattctactg cttctacctt
     1561 ttgccgtttt tataaatttc attactccaa aactagggtc aatatcggct aaaatatgga
     1621 tatggtcttt atcagtttcc atttctatga tttctacatt catttcacta gctatttgca
     1681 atacaatttc ttttaatcta gcttctactt ctcctactaa aaccttacgc ctatatttag
     1741 ggcaccaaat aatgtgatat ttacaagaat aaacaatgtt attgtttgac ttatatttta
     1801 tatttttcat aaaatgaatt atataatttt attttaaata atacataaaa aataaaattt
     1861 ttaaagcctt atatccccat agctaaagct aggggcttta cggctaggtt ttggtaattg
     1921 aaaataatga tattaattt
//
LOCUS       DARAII010000208         1867 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.218, whole genome shotgun sequence.
ACCESSION   DARAII010000208 DARAII010000000
VERSION     DARAII010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.218"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..572
                     /locus_tag="SB143_002073"
     CDS             <1..572
                     /locus_tag="SB143_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="IS607 family transposase"
                     /protein_id="HEF9750558.1"
                     /translation="KSGKIRVTKEPNGYYKYNDEDVYKIAGIEDNRLNVIYARVSTNK
                     QKQDLQNQIDNNIAYLNSKGIKVDKIYSDIKSGMSLDRKGFMDLLSDVMDYKIKVVYV
                     SYKDRLARLSYELVTKLFNDYGTKIEIINNCESKSLEQELFEDIMQTIHAFSMKMYSK
                     RRIAKKLLIESKINKDEVNRICGDDECNE"
     gene            560..1792
                     /locus_tag="SB143_002074"
     CDS             560..1792
                     /locus_tag="SB143_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000176322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEF9750559.1"
                     /translation="MQRVERHIIKPNDKRFNSIKEICHKSKNLYNYVNYIIRQDFIAN
                     KSIPKEYDLTTKLAKEKQADYISLPAQSSQQTIKLLYKNYKSFFKALKSYQKDKSKFT
                     SNPKLPKYKAKNGVSIVVFTNQQAKIKQGKSLNKIHFPKSTNLKPFITKIDNQTSTLK
                     QVRFIPKSTCFIVEVVYECLAKATNLIENSFLSIDLGLNNFVTSIDNQSKQPFIINGR
                     AIKSVNQFFNKLRAKYTQTLKLSNNKFHSKKLANLALKRDCKINDFMHKSSDFIIKHC
                     VEHKIANIVIGKNKEWKQEMNLGKKTNQNFVSIPYNSFIEKMAYKCENYGIKLHLTEE
                     SHTSKCDHLANEPLGHRENYLGKRVKRGLFKSSTGKFINADLNGAIGIARKVFPNAVQ
                     TLRDSGTAFVPIKISIGF"
BASE COUNT          798 a          261 c          281 g          527 t
ORIGIN      
        1 ttaaaagcgg taaaataaga gtaacaaaag agccaaatgg ttattacaag tataacgatg
       61 aagatgttta taaaatagct ggtattgaag ataatagact aaatgtaatc tatgcaagag
      121 taagcacaaa taaacaaaag caagacctac aaaaccaaat tgacaacaac atagcttatt
      181 taaactctaa aggcataaaa gtagataaaa tctacagcga cataaaaagt ggtatgagcc
      241 tagatagaaa aggctttatg gatttattaa gcgatgttat ggattataaa ataaaagttg
      301 tttatgtatc ttataaagat agacttgcta gacttagcta tgagcttgta acaaagctat
      361 ttaatgatta tggcactaag attgagatta tcaataattg cgagagcaaa agcttagagc
      421 aagaattatt tgaagatata atgcaaacaa tccacgcttt ttcaatgaaa atgtattcta
      481 agcgtagaat tgctaaaaag ttactcattg agagtaaaat taacaaagac gaagttaata
      541 ggatttgcgg agatgatgag tgcaacgagt agaaagacac attattaaac caaacgataa
      601 acgctttaat agtataaaag agatttgcca taaatctaaa aatctctata actatgttaa
      661 ttacattatt agacaagatt ttattgcaaa taaatctatt ccaaaagagt atgatttaac
      721 aacaaaatta gctaaagaaa aacaagccga ttatatttct ttaccagcac aaagtagcca
      781 acaaacaata aaactcttat acaaaaacta caagagcttt tttaaggctt taaaatctta
      841 tcaaaaggat aaaagcaaat ttacaagtaa tccaaaacta ccaaaatata aagctaaaaa
      901 tggagtaagc attgttgttt ttacaaatca acaagctaaa atcaaacaag gcaaatcact
      961 aaataaaatt cattttccaa aaagcacaaa tttaaaacca ttcatcacaa aaatagacaa
     1021 tcaaacttct acactaaagc aagttagatt cattccaaaa tctacttgtt ttattgtgga
     1081 agttgtttat gagtgcttag ctaaggctac aaatttaatt gaaaatagct ttttaagcat
     1141 tgatttagga cttaataact ttgtaacttc aatagataat caaagcaaac agccttttat
     1201 tatcaacggc agagcgatta aaagcgtcaa tcaatttttc aacaaattaa gagctaaata
     1261 cacacaaacg ctaaaactct caaataacaa atttcactca aaaaaactag caaatctagc
     1321 tttaaaaaga gattgcaaga taaatgattt tatgcataaa tcaagcgatt tcattataaa
     1381 gcattgtgta gagcataaaa tcgctaatat cgtaattggc aagaataaag aatggaaaca
     1441 agagatgaat ttaggtaaaa aaacaaatca aaactttgtt tcaattcctt ataactcttt
     1501 tattgaaaaa atggcatata aatgtgaaaa ctatggcata aaacttcatt taaccgaaga
     1561 gagccatact agcaaatgcg accatttagc caatgagcct ttggggcata gagagaatta
     1621 cttaggcaaa cgcgttaagc gtggattatt taaatcaagc actggcaaat tcataaatgc
     1681 ggatttaaat ggtgcaatag gtattgctag aaaagtattc cctaatgcag tgcaaactct
     1741 aagggatagc ggaacagcgt tcgttccaat aaaaatttca ataggttttt aacctatgaa
     1801 aaagtttatg aaagaaaact atttaaattc taatataaaa ttaaatagat ttaatggttt
     1861 tttgagc
//
LOCUS       DARAII010000209         1800 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.219, whole genome shotgun sequence.
ACCESSION   DARAII010000209 DARAII010000000
VERSION     DARAII010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1800
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.219"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..832)
                     /locus_tag="SB143_002075"
     CDS             complement(<1..832)
                     /locus_tag="SB143_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HEF9750560.1"
                     /translation="MSEIVKYHNDFNKIQLPSFTEIEQDLLCGLMVKLKEEKGKVTFY
                     PWDLRNILKSSYDNNSLMEFASSLKRKFFKADFTIIEKTTRGEKEVEAHKTINLFTEF
                     AIYVYASSKELESIEIQVNPQFEYILNQLTANFTAFELSEFIALSGKYTKTLYRLLKQ
                     FRTTGKARFEWEEFCRVMDIPQDYRQSAIDKWILKPAIKELSKERNLFDQVRVPFKNL
                     AYEKEKAKGTRGRGGKVSGISFTFKPESVLMQKLEKESQKIMSDEQKYLKILNNMKLN
                     Q"
     gene            1376..1657
                     /locus_tag="SB143_002076"
     CDS             1376..1657
                     /locus_tag="SB143_002076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005799220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="virulence protein"
                     /protein_id="HEF9750561.1"
                     /translation="MYAISFDMNVSSLQLTYNSNYNNAYYEIQNILKEFGFIRIQGSV
                     YTNDQSNSLSFVYRAIEALKQIDWFKQSVVDIRVFKIEDWSNFTDIIKN"
BASE COUNT          588 a          300 c          241 g          671 t
ORIGIN      
        1 cttgattaag tttcatattg tttaaaatct ttaaatattt ttgctcatcg ctcattattt
       61 tttgactttc tttctctagc ttttgcatta aaacgctttc aggtttaaaa gtaaagctaa
      121 tacctgaaac tttaccgccc ctgccccttg ttccttttgc tttttctttc tcataggcaa
      181 ggtttttaaa aggcactcgc acttggtcaa aaagattgcg ttctttagaa agttctttta
      241 tggcaggttt taaaatccat ttatcgattg cactttgtct atagtcttgc ggtatatcca
      301 taaccctgca aaattcttcc cactcaaatc gtgcttttcc tgtggttcta aattgcttta
      361 aaagcctata aagagttttt gtatatttac cgctaagggc aataaattcg ctaagttcaa
      421 aggctgtaaa attagcggtt agttgattta aaatgtattc aaattgcgga ttaacttgta
      481 tttctatact ctctaattct tttgagcttg cataaacata aattgcaaat tctgtaaaaa
      541 ggtttattgt cttgtgtgct tcaacttctt tttcacccct agttgttttt tcaattattg
      601 taaagtcagc tttgaaaaat ttccttttta gagaagacgc aaattccatt agactattat
      661 tatcataact acttttgaga atgtttctta agtcccaagg atagaatgtt actttgcctt
      721 tttcttcttt aagttttacc attaaaccac acaataaatc ttgttcgatt tctgtaaagc
      781 taggcaactg aattttatta aaatcgttgt gatatttaac tatttcgctc atagattttc
      841 ctataaaccc taaggcaagg ggcttttctg cccctgcggt tttgctagaa aaatatttca
      901 actttaagct taaaaaactt aaaatttagg tataatctca caaaacgctt actatgttct
      961 ttcatagtta agcctttaag ggttatttcc gccaagagtg aaaactcaag gcggattttt
     1021 tattgtagca tattaaggat aggttgtcaa tatattttat acccttaata gtttaaattt
     1081 ctacccttaa tagtttaaat ttctaccctt aatagtttaa atttctaccc ttaatagttt
     1141 aaatttctac ccttaatatt tcgatagccc ccataacata gggcttagaa agccccataa
     1201 aaatatataa aaatatataa aaaataaaaa aatcgcgtac gagagagaaa acaaaaaaag
     1261 ttttgatgat atacattata ctttttatac ttctctattt tttattaaat tttttatatt
     1321 ttaatttctt gaaaatatgt tataatccaa aaaataattt caaaaaagga taaaaatgta
     1381 tgccattagt tttgatatga atgtatcttc tttgcaacta acttataact caaactacaa
     1441 taatgcttac tatgaaatcc aaaacatatt aaaagaattt ggctttataa gaatacaagg
     1501 gagcgtatac acgaacgatc aatcaaacag tttatctttt gtgtatagag caattgaagc
     1561 tttaaaacaa attgattggt ttaaacaatc tgtagtagat attagagttt ttaaaattga
     1621 agattggtct aattttactg atataataaa aaattagttt tttactaaat ataaccacta
     1681 tattaggtgt tcgttagcct agggctaact tcacgccccc gcaccccgat tatcgcaaat
     1741 catagcacct tgcggtgcga tttgctaaag caccaaaaaa gaaaactatc tgctaaaccc
//
LOCUS       DARAII010000210         1757 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.221, whole genome shotgun sequence.
ACCESSION   DARAII010000210 DARAII010000000
VERSION     DARAII010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1757
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.221"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>1757
                     /gene="flgE"
                     /locus_tag="SB143_002077"
     CDS             <1..>1757
                     /gene="flgE"
                     /locus_tag="SB143_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002812195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEF9750562.1"
                     /translation="DVAINGDGFFMVSDDGGLTRYLTRSGDFKLDAYGNFVNNAGFVV
                     QGWNINWDTQSIDSSRTPQNIFIDPGMHIPAAKSTEVAIKANLNSGLNIGNAARPLYA
                     LDSVHGFNKKTGETKDENDNGITQFYTTSKNSMEVTEKGVDAGSLFNGSGQGLNLREG
                     QGIWMSFADSKFTTNGTNRTGFDANNKTNQNNVVFWGSENQKTRLDITLNGVAIQNAD
                     ITSLDQAIAYINTFTNPQEGREGTGIVASKNANGTGIIFTNRNENGTTDNMKNINLVV
                     NAQNTAGELWNATWNQGNNNFTFGNGKVNTNGSVWTATGGANNQTTGPTNAVVITAHK
                     YTYSSSPQNIPPMYNPDGGAQFTDNDNNANTKPTDPASGNYWDALRGSLYNTDVRVFR
                     TTEDLRELLQRDARYGVDYNGNGAFATENINQKVTITVSDDGRFTVSNAKQDSQIPAN
                     ALQNQAVTTTAKDLSFNVTAYTDALGKVSTNDAFTKIFKAFDGVQTAGSQKKESEQLK
                     LSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNN
                     IVVGTARFNNDGSLASYNP"
BASE COUNT          621 a          334 c          376 g          426 t
ORIGIN      
        1 gatgtcgcga ttaatggaga cggctttttt atggtgagtg atgacggggg gcttactcgc
       61 tatcttacaa ggagcgggga ttttaaactt gatgcttatg gaaattttgt taataatgca
      121 ggttttgttg tccaagggtg gaatatcaat tgggatactc aaagtataga tagctcaaga
      181 actccgcaaa atattttcat cgatccaggt atgcatatcc ctgcagcaaa atctactgaa
      241 gtggctatca aggcaaattt aaatagtggt ctaaatatcg gcaacgccgc acgcccactt
      301 tacgcacttg actccgtgca tggctttaat aaaaagacag gcgaaacaaa agatgaaaac
      361 gataatggca taactcaatt ttacaccact tctaaaaatt ctatggaagt aactgaaaag
      421 ggcgtagatg caggctcact ctttaatggt agcggtcagg ggcttaatct tagagagggg
      481 caagggattt ggatgagttt tgcagattct aaatttacaa cgaatggcac taatagaaca
      541 ggctttgatg ctaataataa aacaaatcaa aacaatgttg tattttgggg aagtgaaaat
      601 caaaaaacac gccttgacat cactctaaac ggcgtagcga tacaaaatgc cgatatcaca
      661 agcttagacc aagccatagc ttacattaat accttcacaa atccgcaaga aggtagagaa
      721 ggcacaggca tagtagcgag taaaaatgct aacggcactg ggataatatt tacaaataga
      781 aatgaaaacg gcacaacgga taatatgaaa aatatcaacc tagttgtcaa tgcacaaaac
      841 accgcagggg agttatggaa tgcgacttgg aaccaaggta ataataactt tactttcggt
      901 aatggtaaag ttaatacaaa cggctccgtt tggacagcca cagggggagc gaataaccaa
      961 accacaggac caacaaatgc cgttgttatc acagcacaca aatacaccta ctcaagctcc
     1021 ccacaaaata tacctcctat gtataatcct gacggaggtg cgcaatttac ggataatgac
     1081 aataatgcaa atactaaacc aacagatcca gccagtggga actactggga cgctttaaga
     1141 ggaagtcttt ataataccga tgtgcgtgtg tttagaacta ctgaggactt aagagagctt
     1201 ttgcaaagag acgcaagata tggggtcgat tataatggca atggtgcttt tgcaacagaa
     1261 aacatcaatc aaaaagtaac catcaccgta agtgatgacg ggcgttttac cgtgtctaat
     1321 gcaaagcaag atagtcaaat tccagcaaat gccttgcaaa atcaagcagt aacgacaacg
     1381 gcaaaagacc taagctttaa tgttacagcc tacacagatg cgcttggcaa agttagcaca
     1441 aatgacgctt ttaccaaaat ctttaaagct tttgatggtg tgcaaactgc aggaagtcaa
     1501 aaaaaagaaa gtgaacaact caaactttca gcattttcag cggggcttga aatttatgat
     1561 tctttaggtt caaaacatac tttagaagtg cagtttgtca agcaaagcac cactcaagat
     1621 ggaggtaatg aatggcagat gatcatccgt gtgcctgaac cagctgagat caacactaca
     1681 ggtgaaggac caaacaatat tgtcgtagga acagcaagat ttaacaacga tggctcttta
     1741 gctagttaca atcctaa
//
LOCUS       DARAII010000211         1732 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.222, whole genome shotgun sequence.
ACCESSION   DARAII010000211 DARAII010000000
VERSION     DARAII010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1732)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1732)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1732
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.222"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..486
                     /locus_tag="SB143_002078"
     CDS             <1..486
                     /locus_tag="SB143_002078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750563.1"
                     /translation="YYFLDSPLSKNEELFFDLLSYTPILVSTLFMAYISKYYKGLLTR
                     RAIFALMNGRSFSFLLKGFAIFWLFSWLKEISINNPRTVYSWADWTLWLIQYFKPNVS
                     TEQLYVFYYKYAIPALHDASYELLYSMCIFAILPYLTIFYKGYKERVKRFENKDAYEN
                     Y"
     gene            504..866
                     /locus_tag="SB143_002079"
                     /pseudo
     CDS             504..866
                     /locus_tag="SB143_002079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108605.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Bro-N domain-containing protein"
     gene            900..1448
                     /locus_tag="SB143_002080"
     CDS             900..1448
                     /locus_tag="SB143_002080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002794900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEF9750564.1"
                     /translation="MNNVVFINNQEVVFENKDEQVFCTSLDVAKVFGKNHFHVLRDIE
                     NILNNLRKIGTSQDLSNFGLVKYKDKKGELRPAYQISRDGFSLLAMSFTGKKALQWKM
                     LFINAFNEMENIIRSNNQTTNYSDYEFIKKQNEILNQITCTQSSTIYVLQDSIRFLNN
                     TISSMKEINKELKKIAGIDRFL"
     gene            1466..>1732
                     /locus_tag="SB143_002081"
     CDS             1466..>1732
                     /locus_tag="SB143_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750565.1"
                     /translation="MENGSGNIGNKGDINSYGSGRFAHPNLDFGELKERQGGSGRHIF
                     HALSEIQRYHVIEDRSEEIPKEYFTIEQILDYLKIGFKSGMFESF"
BASE COUNT          630 a          211 c          306 g          585 t
ORIGIN      
        1 tattattttt tagattctcc tttaagtaaa aatgaagaac tattttttga tttattgtct
       61 tacactccta ttttagtttc tactttgttt atggcttata tctcgaagta ctataaagga
      121 ttgcttactc gcagggctat ttttgcctta atgaatggca gaagtttttc atttttgctt
      181 aaaggttttg ctatattttg gttattttca tggctaaaag aaatatcaat taataatcca
      241 cgcactgtat attcttgggc ggattggaca ctatggttga tacaatattt caaacctaat
      301 gtcagcactg aacaacttta tgtgttttac tataaatatg ccattcctgc tttgcatgat
      361 gctagttatg aattgcttta ttctatgtgt atctttgcca tattgcctta tttaacaatt
      421 ttttacaaag gctacaaaga aagagttaag cgatttgaaa ataaagatgc gtatgaaaat
      481 tattaattta aaaaggagaa aaaatgaatt tagaaaacag tttacaagct gaagttgtga
      541 ataatagcaa tattgttctt tttgagaatg aagagttggg acaagttaga gtagccttag
      601 atgaaaataa tgagcctttg ttttgcttga gtgatatttg caagattttg gagcttacaa
      661 ctccttcaaa agttgcggac tacataaaaa gggagtttga gctatatgaa ttaaattcat
      721 atagctttga tacaggtttt ggtataaaag aattcactat gattactgag ccacagcttt
      781 attttatctt aatgagaagc gacaagccaa atgcaaaaca ttttagacat tgggtaacaa
      841 aagaagtttt accaagtatt agaaaaatat gaaaattatt aatttaaaaa ggagaaaaaa
      901 tgaacaatgt agtatttatc aataatcaag aagttgtttt tgaaaacaaa gacgaacaag
      961 ttttttgcac aagtttggat gtggctaagg tttttggaaa gaatcatttt catgttttaa
     1021 gggatattga gaacattttg aataatttgc gaaaaatagg gacttctcaa gacctatcca
     1081 attttggatt ggttaaatat aaagataaaa aaggcgaact tagaccagct tatcaaatat
     1141 ctcgcgatgg attctctctt ttagctatga gctttacagg caaaaaagca ttacaatgga
     1201 aaatgctttt tatcaatgct tttaatgaaa tggaaaacat tattagaagc aataatcaaa
     1261 ccactaatta ttctgattat gaatttatca aaaaacaaaa cgaaatttta aatcaaataa
     1321 cttgcactca aagcagtaca atctatgttt tgcaagatag catcagattt ttaaacaata
     1381 ccattagttc aatgaaagaa attaacaaag aactgaaaaa aattgcaggt attgatagat
     1441 ttttatgaga tagtaggaga atataatgga gaatggtagc ggtaatatag gcaataaagg
     1501 cgatataaat tcttatggtt caggtagatt tgcgcatcct aatttagatt ttggggaatt
     1561 aaaggagaga cagggcggaa gcggtagaca tatttttcat gctttaagcg aaattcaaag
     1621 atatcatgtt atcgaagatc gcagtgaaga aattccaaaa gaatatttta ccattgaaca
     1681 aatcttagac tatttgaaaa taggctttaa aagcggtatg tttgaaagct tt
//
LOCUS       DARAII010000212         1719 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.223, whole genome shotgun sequence.
ACCESSION   DARAII010000212 DARAII010000000
VERSION     DARAII010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.223"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            53..916
                     /locus_tag="SB143_002082"
     CDS             53..916
                     /locus_tag="SB143_002082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEF9750566.1"
                     /translation="MISSSDWKLNTAATTSGATSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGANELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGKYTVKMVYNNKNGEKITANY
                     GTYPIEGIVFKEGIAYAKMAGKEVPFDAISEITDYKLSSSSSTGSGSSGSGSSGDSSG
                     STEDGNKEEKA"
     gene            920..>1719
                     /locus_tag="SB143_002083"
     CDS             920..>1719
                     /locus_tag="SB143_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEF9750567.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASEGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDAAGNLVDSYGNFVLGTMNPAFAGVSYSDRVAGLMGDYLNTGTPVNS
                     GFTVNSNDAFNIGTTASQGVIKVPVNMYLPPQVTQNVKWSGSLNTNATTEVVKVDLDP
                     AKFNVQKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEA"
BASE COUNT          590 a          258 c          366 g          505 t
ORIGIN      
        1 ttggaacact tattgcttaa ataataaaaa actaaataaa aaggagttta taatgatatc
       61 atcatcggat tggaaattaa ataccgctgc tacaacttca ggtgctactt cttcaggaag
      121 tactagtgga acaactagaa cagattcaag cagtagctca ggaatagtga gcaatccaaa
      181 cgctacctta gataaggatg cgtttttaaa acttcttttg atagagcttc aacatcaaga
      241 tccaaccgat cctatggata gcgataaaat gcttacgcaa acttctcaat tgtcagcact
      301 tgaaatgcaa caaaatacaa atactaccat gcaaaaaatg gttgaaacta tgcaaaagct
      361 ttctgattct tttagtacaa gtatgagtac ttcagcttta ggggctattg gtaaaatggc
      421 aactgtttca gataataaaa tcaaacttac aggtgcaaat gagcttattg cactaaaaat
      481 gtatttgcct gaagattctg atgaaaacgg tgttacgcta gaaatttatg atagcaataa
      541 taaacttgtt ttcagtgaaa aaagcgatgc taaatctatt tctcaaggtt tatttactat
      601 ggagtggcca ggaagaaata acgatggggt ttatgcaggt gatggtaagt acactgttaa
      661 aatggtttat aataataaaa atggcgaaaa aatcactgca aattatggta cttaccctat
      721 agaaggaatt gtttttaaag agggtattgc ttatgcaaaa atggctggaa aagaagttcc
      781 ttttgatgct atatcagaaa tcactgatta taaattaagc tcttcttcta gcacgggaag
      841 cggtagttca ggaagtggtt caagcggaga ttcttcagga tctacagaag atggcaacaa
      901 agaggaaaag gcataagcca tgatgaattc attttataat gggatttctg gagtaaaaag
      961 caatagcttt ggtattgata tcactgctaa taacatagca aatgtcaata ccacaggctt
     1021 taaatactct gatgctcaat ttaaagatat tttttatacc accataacaa cccaatcaac
     1081 caaccctgcc caaggaggct atggaagtgg tgcggcttct tctcaagtcg tttttgaaca
     1141 aggttcacct gtagcaagtg agggtgaatt tgatgtggca cttcaaggaa aaggattttt
     1201 tggtgttttg ggtgctgatg gcaatgctta ctatactaga aatggatcat ttagaagaga
     1261 tgctgctgga aatttggtag attcttatgg aaattttgtt ttaggaacta tgaatcctgc
     1321 ttttgctgga gtgagttata gtgatagagt cgcggggctt atgggggatt atcttaacac
     1381 aggaactcct gtaaatagtg gctttaccgt aaattcaaat gacgctttta acatagggac
     1441 aacggcttca caaggagtga ttaaagttcc tgtgaatatg tatttgcctc cgcaagtaac
     1501 tcaaaatgta aaatggagtg gaagtttaaa tacgaatgca acaacagaag tggttaaagt
     1561 cgatcttgat cctgcgaaat ttaatgtcca aaagactgaa gatggcaaat atgtagtgag
     1621 cggtagtgtt agcaaagaag atgtgtttag tgctaaagcg ggtgatagga tcattttaaa
     1681 tttcactgat gataatggcg taaaaacaag ctttgaagc
//
LOCUS       DARAII010000213         1664 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.224, whole genome shotgun sequence.
ACCESSION   DARAII010000213 DARAII010000000
VERSION     DARAII010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.224"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..370
                     /locus_tag="SB143_002084"
     CDS             <1..370
                     /locus_tag="SB143_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750568.1"
                     /translation="FDIAYVYVVEALCNDYLSERYRIGVFTSFDEALDFVAKNFYKSE
                     KSKISYSRESNDTWVIDNDEIKNQSIRHRITDSYIENVNIDAREIRIRVDTSNFILLN
                     DGRLIQIIEPFFHDEIICLN"
     gene            455..1414
                     /locus_tag="SB143_002085"
     CDS             455..1414
                     /locus_tag="SB143_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002821111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEF9750569.1"
                     /translation="MEKNKFDEFVAKNLPKALKKDTEQSLGDRSKYIGSSDIGGCLRK
                     AYLDKTTNYEHDLATLIRFQRGHVAEGIIEKMLDGLNPTLQKEVKVTIDGFDLKAHID
                     FCLENKDEIVVVEAKSVNTAVDKPYDSWIMQVNFQLAMLATQTQKKLRAYVVAINLNT
                     GWFKSFEVNGNQAHEKMAIENAQILANALLNKEEPIASEQLYCSTCPHKGSCPLMVKK
                     SEGSELSGDLLEVGKKIIELNAKKKELEKELEEKKTLIEEYMRTCGTKKIKIDDSFIS
                     LSNDTTSVSFDTKALKDNEPELYESLFEKYQKTSQRKGYLSIK"
     gene            1509..>1664
                     /locus_tag="SB143_002086"
     CDS             1509..>1664
                     /locus_tag="SB143_002086"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750570.1"
                     /translation="MKEVEEIEFFIFKKIKNSKEFKNYISKLEDRKLPKLFSDEELKV
                     QCVYERIK"
BASE COUNT          652 a          203 c          300 g          509 t
ORIGIN      
        1 ctttgatata gcatatgtat atgttgttga agctttatgc aacgattatc tttcagagcg
       61 gtatagaatt ggtgttttta ctagctttga tgaagctttg gattttgttg ccaaaaattt
      121 ttacaaaagt gaaaaatcta aaatttctta ttcaagagaa tcaaatgaca cttgggttat
      181 tgataatgat gaaatcaaaa atcaaagtat caggcataga ataacagata gttacattga
      241 aaatgtgaat atagatgcaa gagagatccg tattagggtt gatactagca attttattct
      301 tttaaacgat ggaagattga ttcaaattat agaacctttt tttcacgatg aaattatctg
      361 cttaaattaa tcagccccta gttgggatag aaactatccc aactagggat acttctatcc
      421 ttttttaatt taaaaatata aaaaaggaaa aattatggaa aaaaataaat ttgatgaatt
      481 tgtagcaaaa aacttaccaa aggctttgaa aaaagatact gaacagagct taggagatag
      541 atctaaatat attggatcat ctgacatagg tggttgtctt agaaaggctt atcttgataa
      601 aacaactaat tatgaacacg atttagccac tcttattcgc tttcaaaggg gacatgttgc
      661 tgaaggcatt attgaaaaaa tgctcgatgg attaaatcct acacttcaaa aagaagttaa
      721 agtgacaata gatggttttg atctaaaagc tcacatagat ttttgcttgg aaaataaaga
      781 tgagattgtg gttgttgaag ctaaaagtgt taatacagct gttgataaac cttatgactc
      841 ttggattatg caggttaatt ttcagcttgc tatgcttgca acacaaacac aaaaaaagtt
      901 aagagcttat gttgttgcta tcaatctaaa tacaggttgg tttaaatcgt ttgaagtgaa
      961 tggcaatcaa gcgcatgaaa aaatggcaat tgagaatgct caaattttag caaatgctct
     1021 tttaaacaaa gaagagccta ttgctagtga acaactctat tgttctactt gccctcataa
     1081 aggttcttgt cctttaatgg taaagaaaag tgaaggtagt gaactaagtg gtgatttgct
     1141 tgaggtaggc aaaaaaataa ttgagttaaa tgccaagaaa aaagaacttg aaaaagaact
     1201 tgaagagaaa aaaaccttga ttgaagagta tatgcgaact tgcggcacta agaaaatcaa
     1261 gattgatgat agttttattt ctttatcaaa cgacaccaca agcgtaagct ttgatacaaa
     1321 agctttaaaa gataatgagc ctgagcttta tgaaagtctt tttgaaaaat atcaaaaaac
     1381 ttctcaaaga aaaggctatt taagtattaa gtaggattaa catgagcaaa acatcagcaa
     1441 aaagactagc aaaaagacta gcaaaaaagg ctcgagaaaa agagctattt ttgcttttca
     1501 aggaattcat gaaagaagtt gaggaaatag aattttttat atttaaaaaa ataaaaaatt
     1561 ctaaagaatt taaaaattat atttcaaaac tagaagatag gaaacttccg aaacttttta
     1621 gtgatgaaga attaaaagta caatgtgttt atgaaaggat taaa
//
LOCUS       DARAII010000214         1652 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.225, whole genome shotgun sequence.
ACCESSION   DARAII010000214 DARAII010000000
VERSION     DARAII010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1652)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1652)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1652
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.225"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            38..301
                     /locus_tag="SB143_002087"
     CDS             38..301
                     /locus_tag="SB143_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEF9750571.1"
                     /translation="MEHLVIIWNVIKNLVTLNLSAVQKHEWEIFQGYGFFLFVMFLSI
                     VLYSYWYHLYRAEKKGERNYEKYANLALSDDIDDSVLESKRSA"
     gene            301..1164
                     /locus_tag="SB143_002088"
     CDS             301..1164
                     /locus_tag="SB143_002088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEF9750572.1"
                     /translation="MQWLNLQDNVNLLSFIGAILIILITLVVVGRMFKYMKEKKGEAE
                     LSEHSWDGIGEYKNAIPIGWAVIFFLTIVWAVWYFLWGYPLNSYSSIGEYNEEVKAYN
                     TKFEEKFQNLSTEDKVAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGLIDAI
                     KHGAKGMNFPGGEMPAAADLGIAEEDIPAIAAYVAKELSAIKKTSNENLVAKGKEAYA
                     TCAACHGEDGKGQDGIFPDLTKYGSAAFVVDVLHSGKTGFIGAMPAFSILNDTQKEAV
                     GEYVISLSRGE"
     gene            1161..1385
                     /locus_tag="SB143_002089"
     CDS             1161..1385
                     /locus_tag="SB143_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEF9750573.1"
                     /translation="MMENTNRCVFSLSGVTGMLIATVLLLAILVGLTIWGLKAQQEVM
                     QQPYSLKDIQNVKMLGSKEQDHKSIGGTAQ"
     gene            1382..1483
                     /locus_tag="SB143_002090"
     CDS             1382..1483
                     /locus_tag="SB143_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750574.1"
                     /translation="MSKVLEYLIVIGLVVTAAITAWSVLTANHLHIG"
     gene            1480..>1652
                     /locus_tag="SB143_002091"
     CDS             1480..>1652
                     /locus_tag="SB143_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750575.1"
                     /translation="MRKILQDGLLAIFLFFIPVQILALEPVVFNENVLNQKVVDEINL
                     IGKELQEKSGIFAG"
BASE COUNT          537 a          209 c          356 g          550 t
ORIGIN      
        1 gctttaatcg cttatttaaa tagcttaaag taaaaatatg gaacatttag tgattatttg
       61 gaatgtgatt aaaaatttgg tcactttgaa tttatcagca gtgcaaaaac atgaatggga
      121 aatttttcaa ggttatggat tttttctatt tgtaatgttt ttatcaatag tattgtattc
      181 ttattggtat catctttata gggcagaaaa aaaaggcgag agaaattatg aaaaatatgc
      241 aaatctcgct ttgagcgatg atattgatga tagtgtttta gaaagtaaaa ggagtgcttg
      301 atgcaatggt taaatttgca agataatgtt aatttattat ctttcattgg agcgattctt
      361 attatattga ttactcttgt agtcgttggt agaatgttta aatatatgaa agagaaaaaa
      421 ggtgaggcag aattaagtga gcatagctgg gatggcatag gagaatataa aaatgcgatt
      481 ccaataggct gggctgttat attctttctt accatagtat gggcagtttg gtatttttta
      541 tggggatatc ctttaaattc ttactcaagt ataggtgagt acaacgaaga agttaaggct
      601 tacaatacta aatttgaaga aaaattccaa aacttatcta ctgaagataa ggtagctatg
      661 ggacaaaata tctttttggt tcaatgctct gcttgtcatg gaattactgg tgatggtatc
      721 aatggaaaag ctcaaaattt aaatatttgg ggtagcgaag agggtttaat cgatgcgatt
      781 aaacatggtg caaaaggtat gaatttccca ggtggagaaa tgcctgctgc tgcggatttg
      841 ggaattgctg aagaagatat tcctgcgatt gctgcttatg tagcaaaaga gctttctgct
      901 atcaagaaaa cttctaatga aaatttggtt gctaaaggaa aagaggctta tgcaacttgt
      961 gcagcttgcc atggtgaaga tggaaaaggt caagatggaa ttttccctga tcttacaaaa
     1021 tacggctcag cagcatttgt tgtagatgtt ttacatagtg gtaaaacagg ctttattgga
     1081 gctatgccag cattttctat attgaatgat actcaaaaag aagctgttgg tgagtatgta
     1141 atttctcttt caaggggtga ataatggaaa acactaatag atgcgtattt tctctttcag
     1201 gtgttacggg tatgctgatt gctaccgttt tattgcttgc aattttagta ggtttaacca
     1261 tttggggtct taaagctcaa caagaagtaa tgcaacagcc ctacagcctt aaagatatcc
     1321 aaaatgttaa aatgcttggt tcaaaagaac aagatcataa aagcatagga gggacagcgc
     1381 aatgagtaaa gttttagaat atttgattgt tattggctta gttgtgactg ctgcgattac
     1441 tgcatggtcg gttttaactg caaaccatct tcatatagga tgagaaaaat actacaggat
     1501 ggcttattag ccatcttttt attttttata cctgtgcaaa ttcttgccct tgagcctgta
     1561 gtttttaatg aaaatgtact taaccaaaaa gttgttgatg agattaatct tatcggtaaa
     1621 gaacttcaag aaaaaagcgg aatttttgcc gg
//
LOCUS       DARAII010000215         1642 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.226, whole genome shotgun sequence.
ACCESSION   DARAII010000215 DARAII010000000
VERSION     DARAII010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.226"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(279..>1642)
                     /gene="ppk1"
                     /locus_tag="SB143_002092"
     CDS             complement(279..>1642)
                     /gene="ppk1"
                     /locus_tag="SB143_002092"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polyphosphate kinase 1"
                     /protein_id="HEF9750576.1"
                     /translation="EQGLKLRRKGAFVRLQIQKGADEQIVEFLNTHMKIFHKDVYEYS
                     ILLNLPSLWQIAGNKTFTHLLSPLYAPKTLPPFDENLSIFDAIDKEDILIIQPFESFD
                     PVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGIQVTVMVELKARFDEE
                     NNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKKGDKLKFYIHLSTGNYNASSAKI
                     YTDVSYFTSKIEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKILEMIALEASKG
                     SEGVIIAKMNSLVDSDIIKALYGASIKGTQIDLIVRGICCLKPNEEFSKNIRVRSIIG
                     KYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKLAQFLRLQLS
                     DNLLAYELQNDGEYTKVASNEKVIDSQQILEEYVSKIYKTLKKDADQSRATYLASKLF
                     KEN"
BASE COUNT          518 a          279 c          264 g          581 t
ORIGIN      
        1 caaatttaca atataggtaa agctagttaa gatatttact caagtatagc ttaagacatt
       61 aaggctgtaa aagataataa tgatgggagt gagagcgaaa acaaaacctt agcaaattat
      121 ataattaatc gaattatata gttaaccaaa aatagtaaaa aaacacaaat aaagaaaatt
      181 tgtgttttga gtagctattt tgtagctaaa atgaaaatta aaacatttaa acattatttt
      241 ttaatgcaaa tttaattccc ctcgcttcca ccattttatc agttttcttt aaaaagctta
      301 gaagctagat aggttgcgcg actttgatca gcatcttttt taagggtttt atagatttta
      361 ctgacatatt cttctaaaat ttgttgtgag tcaatcactt tttcattgct agcaactttt
      421 gtatattctc catcattttg aagctcgtaa gcaagtaaat tatcgctgag ttgcaagcgt
      481 aagaattgtg ctaattttgc cttgcttctt tcatcatata taggagtcat aagttctaaa
      541 cgacgctcta aatttcttgg catccaatcc gcacttgata taaaataatt tggctcgctg
      601 tgtttaaaat aaaacactct agcatgttct aaatattttc ctataatact tctaacgcgt
      661 atgtttttgc tgaattcttc attaggtttc aagcagcaaa ttccacgcac aataagatcg
      721 atttgagttc cttttatact agctccataa agagctttta taatatcgct atctacaaga
      781 gaattcattt ttgcgatgat aactccttcg ctccccttac ttgcctctaa agctatcatt
      841 tctagaattt tttccttgat ttgatttgga ctcatagaga gggtttgaag gcgacgattt
      901 ttactaaatc ctgaaagtat gtgaaaaaag cttgttgtat cccttgcaaa ttcaatctta
      961 cttgtaaaat aacttacatc ggtatagatt ttagcactgc ttgcgttgta atttcctgta
     1021 cttaaatgta tataaaattt aagcttatcg ccttttttgc gtataacttg agaaactttg
     1081 gcatgaactt taaagccagt gattccataa atcacatgag ctccagcgtt ttctaaagct
     1141 tttgcccagt gaagattgtt ttcctcatca aagcgggctt taagctctac cataactgta
     1201 acttgtatcc catcgctcgc tgcgtcgatt aaagcttgga ctatattaga gtttttctct
     1261 actctataaa gagtcattct tatggaaata acctcaggat ccttgcttgc ttctttgatg
     1321 aatttataaa caggatcaaa gctttcaaaa ggttgaatga tgagtatatc ttctttatct
     1381 atcgcatcaa agatggataa attttcatca aaaggtggca aggttttagg tgcataaagc
     1441 gggcttaaaa gatgagtaaa ggtcttgttg ccagcaattt gccaaaggct aggaagattt
     1501 agtaagatag aatactcata aacatccttg tggaaaattt tcatatgggt attaagaaat
     1561 tctacgattt gttcatctgc gcccttttga atttgcaatc ttacaaaagc accctttctg
     1621 cgaagtttta agccttgctc ta
//
LOCUS       DARAII010000216         1609 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.228, whole genome shotgun sequence.
ACCESSION   DARAII010000216 DARAII010000000
VERSION     DARAII010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1609
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.228"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(145..1003)
                     /locus_tag="SB143_002093"
                     /pseudo
     CDS             complement(145..1003)
                     /locus_tag="SB143_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868637.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
     gene            complement(1000..>1609)
                     /locus_tag="SB143_002094"
     CDS             complement(1000..>1609)
                     /locus_tag="SB143_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004290180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEF9750577.1"
                     /translation="LAINGIKIQSFDEISNHLSLEPLKILIDRKGENLEFLITPKLGQ
                     AYNDFGQVVSKAQLGVSPSGSTTIIYHQGMQSINYALDESIKASTLIVKGIVKLISGE
                     VEAKNLGGIITMTELTSKAAEKSLVVLLFITALISINLGILNLLPIPMLDGGHILFNL
                     YEMIFRRKVPPRAFEYLSYGGMALLLSLMVFATFNDIMRVMQ"
BASE COUNT          545 a          260 c          256 g          548 t
ORIGIN      
        1 cttttaaaat cgaaaagccc ttgtttaatg acttaaaagc aatgcagtat tattaccctc
       61 aagaagtctc taaagagcat ctagaaagac ttttaatttt acaaaaagag ggttgtgaaa
      121 gaagtgtgaa atatctaaag agtattatat aaacaagctt tgatctaaag cttgtttgat
      181 ttcttcaagt atggcaaagc gttttttata cattgaacgc ttgctgcttg gaatttcttc
      241 aagatttttt cgcttgtgag aaagttcata atataaatga ttattgatct tgacaagctt
      301 tcccccattt tctagccaaa ttttttgata atcaacaaaa tagcctttat cctctccttt
      361 ttgagagcgg atttgatttt tttcatggac tccaagcgtg gcatcgagtt ttaaagatac
      421 acaaagcatt ttaatacact ctataagcag ggcaatagga cgcaatccgt agcatttttt
      481 tgtaaagatt ttattgatat ctaaaacatt aaaatcagag tattgataac cttgtatgca
      541 agaaattaaa agcttattat ctaaggtaaa acaaaaacag cattgttcaa tgggtgcgtt
      601 ttgatatctt aaagaaagtg cccaaaaacc ctcttcggat acatgacgat tgcttcctaa
      661 gtagagttca aaatcttcat caaatttgaa aataatttga tcttggggta gaaatttaaa
      721 actttcaagt cccttgttta catcataaat caaagtttta acacgctcat tagcgctaaa
      781 gcttttatcg caaaatcttc ttgtgacatt gtagcaagca tcgggtctat ttgaaaaaaa
      841 agttctttag gtgttcattt cctttcatat tgagcgtttt ttcaagaaat ttaacttgag
      901 gatagtataa aaattttcta gaataaaatc gcatatgacg ccaaaaaata gtacttttgg
      961 atttgtcatt aaaattaggt ataggaaatt taaataaatt cattgcatca ctctcatgat
     1021 atcgttaaat gttgcaaaaa ccatcaagct taaaagcaaa gccattcctc catagctaag
     1081 gtattcaaaa gctcttggtg gaactttgcg tctaaaaatc atttcataaa gattaaaaag
     1141 tatatgtcct ccatctagca tagggatagg caagagattt aaaattccta aattgatgga
     1201 gattaaagca gtgataaata gcaatacaac caagcttttc tcagccgcct ttgaagtaag
     1261 ctcagtcatg gtgataatac cacctaaatt tttagcctca acttcaccac ttatgagttt
     1321 aacgatacct tttactataa gagtagaagc tttaatgctc tcatctaaag cataatttat
     1381 actttgcatg ccttgatgat agattatagt ggtgcttcca ctagggctta ctccaagctg
     1441 ggcttttgaa acaacttgtc caaaatcatt ataagcttgt cctagttttg gagtgataag
     1501 aaattctaaa ttttctcctt ttctgtcgat aagaattttt aagggttcaa gacttaggtg
     1561 attagaaatt tcatcaaaac tttgaatttt tatgccattt atagcaagt
//
LOCUS       DARAII010000217         1579 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.229, whole genome shotgun sequence.
ACCESSION   DARAII010000217 DARAII010000000
VERSION     DARAII010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1579)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1579)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1579
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.229"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            123..1490
                     /locus_tag="SB143_002095"
     CDS             123..1490
                     /locus_tag="SB143_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretion system DNA-binding
                     domain-containing protein"
                     /protein_id="HEF9750578.1"
                     /translation="MFLKKSEEEKTFIGIGFDLEDKKQEKLLEIYQIDDNSKNHTFVF
                     GSTGVGKTRLIEGLIEQDIPKGKNVVIIDPKGDIGLFSKMVEIAKKSNREKELMFLSP
                     IYPEYSIKINPLANYYMEEEIIAHIVSGVPAKDEFFYNVANETTTAVVKALLIIRRYE
                     KLEKPLNFEEIAEKVYYEGLKELQSELKEIQSNGFEDDEIARLLALYDRVLSSPQDYF
                     AKVSSTLRTTLTQMTMGNVGKIIGTAQENTFIKRLQENQGVLLYIMTGSMLTRQVSSI
                     ISKVTISMIQSCVGRVYASGKKFDKTLKIYIDEAASSVYRGIETLYAQARGAGVAIMG
                     LTQSAADLAAEIGQDGANRLLELTNTKIIMRLNDTKSSKMISDLGGKKRAYSYFLTVE
                     GGITSREVEELNIEVDDVTNLQKREFFYFGFEGRFKGKTLKVNDGKLVVDMPNVTQKN
                     EDFNV"
BASE COUNT          593 a          195 c          290 g          501 t
ORIGIN      
        1 gattttgata taagtgattt agaatctgat cctagatact taagatatgc catagattta
       61 tgcaatgatg caatatctaa taattttcta agtagaaaat taatttaaaa taaagtgcaa
      121 aaatgtttct taaaaaatca gaagaagaaa aaacatttat cggcataggt tttgatttag
      181 aagataaaaa acaagagaag cttttagaaa tatatcaaat cgatgataat tctaaaaatc
      241 acacttttgt atttggctcc acaggtgtgg gtaaaacaag actcattgaa gggcttattg
      301 aacaagatat tccaaaagga aaaaatgttg ttatcattga tcctaaaggt gatatagggc
      361 tgttttcaaa aatggttgaa attgctaaaa aaagtaatag agaaaaagaa cttatgtttt
      421 taagtcctat ttatcctgaa tattcgatca aaattaatcc gttagcaaat tactacatgg
      481 aagaagaaat cattgctcat attgtttcag gtgttcctgc aaaagatgag ttcttttata
      541 atgttgcaaa tgaaacaacc acagctgttg taaaagcttt gcttattatt aggcgttatg
      601 aaaagctaga aaaaccttta aattttgaag aaattgctga aaaagtttat tatgaaggtt
      661 taaaagagct tcaatcagaa ttaaaagaaa tacaaagtaa tggttttgaa gatgatgaga
      721 ttgctagatt gcttgctcta tacgacaggg ttttatcatc accacaagat tattttgcca
      781 aagtttcatc aactcttaga accacgctta ctcaaatgac catgggtaat gtaggaaaaa
      841 ttataggtac cgcacaagaa aacactttta ttaaaagatt acaagaaaat caaggcgtgc
      901 ttttatatat tatgacaggt tctatgctta caaggcaagt gtcaagtatt atttccaaag
      961 taaccatttc tatgattcaa tcttgcgtgg gcagggttta tgcctcagga aaaaaatttg
     1021 ataaaacatt aaaaatttac attgatgaag ctgcttcttc tgtgtataga ggtatagaaa
     1081 ctttatatgc ccaagcaagg ggtgcaggag tagctattat ggggttaact caatcagcag
     1141 ctgacttagc ggctgaaata ggacaagatg gggcaaacag attattagaa ctcactaaca
     1201 ctaaaataat tatgcgctta aatgatacaa aaagctctaa aatgatttca gatctagggg
     1261 gtaaaaaaag agcttattct tattttttaa ccgtagaagg aggaattact tcaagagagg
     1321 ttgaagaatt aaatattgag gttgatgatg tgactaacct acaaaaaaga gaattttttt
     1381 attttggttt tgaagggcgt tttaaaggaa agactttaaa agtgaatgat ggaaaattag
     1441 ttgtggatat gcctaatgta actcaaaaaa acgaggattt taatgtttga tttaattgaa
     1501 aatgtgatga gttttattta tcgccatcaa ctcattagaa aggttgtttg gcaaattata
     1561 atcactttcg tatctattt
//
LOCUS       DARAII010000218         1578 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.230, whole genome shotgun sequence.
ACCESSION   DARAII010000218 DARAII010000000
VERSION     DARAII010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1578)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1578)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1578
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.230"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..1238)
                     /gene="fliD"
                     /locus_tag="SB143_002096"
     CDS             complement(<1..1238)
                     /gene="fliD"
                     /locus_tag="SB143_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEF9750579.1"
                     /translation="MAFGSLSSLGFGSGVLKQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDGGFVNAQLTGTADLTFFSNGKEYTVRVDKNTTYRNLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYQSDLEA
                     EKIFSNLGWELDKTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTE"
     gene            complement(1241..>1578)
                     /gene="flaG"
                     /locus_tag="SB143_002097"
     CDS             complement(1241..>1578)
                     /gene="flaG"
                     /locus_tag="SB143_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEF9750580.1"
                     /translation="DTALANISQRTSETQASSNIQTDRSQSQGGDDGQQRGVSEKLAD
                     ITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEAIRLAEYFRDV
                     IGMIFDKES"
BASE COUNT          447 a          331 c          215 g          585 t
ORIGIN      
        1 ctttcagtag agtctggatc ttctttaact ttttgttcaa atttagaaga atcaaaactc
       61 aaagtgcctg catcatttaa acttaagcca aaatcctgca tagaaagcat aaccttagtg
      121 tttactttat taccatttgc atcttcagta gttccatcaa caacttgaga atcaaacaaa
      181 tcagcaagaa tgcttgagcg tattgaattt acttcactga tgccttgtaa agttcctttt
      241 gttccagttt cactattata gtcagttgca gcattaagat tggttactaa atcattataa
      301 gcatccacca aatcttgcat ggcttttgtc acaccttcaa aatcttgctg tacatcaaaa
      361 ttaatttcac ctgttttatt taaagttaaa gtcattccta caccaagatc ggtaacagta
      421 ttacttgatc taaacatctt aataccatca agtgtaaatt ctgcattttg cgcagtttgg
      481 atatgcaaag aagcatcctt aatgccataa ccttttttat ccttagctgg atcaatagaa
      541 ctcgttttat ctaattccca tccaagattt gaaaatattt tttctgcctc tagatcactt
      601 tgatactgac cctgcgcatc tttttttcca gcatagaaac ttatcgcact atcttcgcct
      661 gtttctttac tggttaaagt taagcggtaa ggagtgcctt tctctcctgt gtttacaatc
      721 ttagcaacaa tctctcctcc actagcttca ttaattttat cagctaaatt tctataggtt
      781 gtgtttttat ctaccctaac agtatattct ttgccatttg aaaaaaaagt aagatcggca
      841 gttccagtta attgtgcatt aacaaaacca ccgtcatttg ctaatccttt gctttgatac
      901 acatcttttt gtgcaagttg agttacattg atattcatac tttgtaaagc aacacctgaa
      961 ttaaccgtaa gacttgctgg aggattatca ctaatacttc ctacaacttt tcttttcgca
     1021 aaaaccgtag catcggctaa tgatgaaaca gccgtctgaa aacttagtaa tttagttttg
     1081 atttctgtta aatctttttg tttggttgta ttttcttcaa tttttttagt ataaggatca
     1141 atgcgagctt tttgctctgc ttcttttaat ttatctatag tatcttgctt taaaacccca
     1201 gaaccaaatc ctaaactaga tagactacca aatgccattt ttaactctcc ttatcaaata
     1261 tcattcctat cacatcccta aaatactcag ctaatcttat agcttcttcg ctaggaattt
     1321 gacggatttc ccttccagta cttttttccg taacgctaat atacatagaa ccgattttat
     1381 cgctataacc aaagcgaaca ttggtatcta aagagtccat ttgctcattt agtttttttg
     1441 taatatcagc taatttttca ctcacacctc gttgctgtcc atcatcgcct ccttgacttt
     1501 gacttctatc ggtttgaatg tttgagctag cctgtgtctc acttgttctt tggctaatgt
     1561 ttgccaaagc tgtatcca
//
LOCUS       DARAII010000219         1543 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.231, whole genome shotgun sequence.
ACCESSION   DARAII010000219 DARAII010000000
VERSION     DARAII010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1543)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1543)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1543
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.231"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1515
                     /locus_tag="SB143_002098"
     CDS             <1..1515
                     /locus_tag="SB143_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEF9750581.1"
                     /translation="TALYHFLFVPLTLGLSFIIAIMETIYVKTGNERWKKITKFWLSL
                     FAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEGIMAFFLEATFFAVMFF
                     GWDKVSKKFHLISTWCVAIGSNLSAFWILVANGWMQYPVGMQFNPDTARNEMQSFFEV
                     ALSPVAISKFLHTIGSGYVISALFVMGISAWFILKGRHIIEAKKSLVVGASFGLVCSV
                     FLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGILNPKKTIDNNESVFLFD
                     ITIPYALSILGNRDPNSFVPGIEDLIHGNEDRGIEPMQERIDKGKIAIQALKDYKLAK
                     DNNDTAAMATHKSILEANFKDFGYGYLEKPTDAIPPVALTFYSFHIMVALGSLFFLLF
                     IATLYLTMANDIEKFRKILWLCLLCIPLGYIAAEAGWIVAEVGRQPWAIQDLMPVHIA
                     ATELGKVNVQISFWIFAVLFTALLIAEIKIMLTQIKKGFDAHAGHTPLMGKGEK"
BASE COUNT          440 a          227 c          322 g          554 t
ORIGIN      
        1 accgcgcttt atcatttttt atttgtgcct ttgactttgg gcttatcttt tatcattgct
       61 attatggaaa ccatttatgt aaaaacaggc aatgaaagat ggaaaaaaat cactaaattc
      121 tggctttctt tatttgctat caattttgct atcggcgtag ctacgggcat tattatggag
      181 tttgaatttg gaaccaactg ggcaaattat agctggtttg tgggtgatat ttttggtgct
      241 cctttggcag ttgaaggtat aatggccttt ttcttagagg ctactttttt tgctgttatg
      301 ttttttggct gggataaagt ttctaagaaa ttccatctta tttcaacttg gtgtgtggct
      361 ataggcagta atttatcagc attttggatt ttggttgcaa atggctggat gcaataccct
      421 gtgggaatgc aatttaatcc cgatacagca agaaatgaaa tgcaaagctt ttttgaagtt
      481 gcactttctc ctgtagcgat ctctaaattt ttacatacca taggcagtgg ttatgtgatt
      541 tctgctttat ttgtgatggg aatttcggct tggtttatat taaaagggcg tcatattatc
      601 gaagctaaga aaagtttagt tgtgggtgct agttttgggc ttgtttgttc ggttttctta
      661 ttttttagcg gagatgagag tgcttatcgt gttacccaaa cgcaacctat gaaacttgca
      721 gctatggaag gggtttatca aggtgagcac cgtgcaggac ttgttccttt tggaatttta
      781 aatcctaaaa aaactataga taataacgaa agtgtgtttt tatttgatat tactatacct
      841 tatgctttat ctatattagg aaatcgtgat cctaattctt ttgtgccagg cattgaggat
      901 ttaatacacg gaaacgaaga tagaggcata gagcctatgc aagaacgcat cgataaagga
      961 aaaatcgcta tacaggcttt aaaagattat aaattagcta aagataataa cgatacagca
     1021 gccatggcaa ctcacaaaag tattttagag gcaaatttta aagattttgg ttatggttat
     1081 ttagaaaaac caacagatgc tatcccacct gtggctttaa ctttttatag ttttcatatc
     1141 atggtagctc ttggaagctt atttttctta ctttttatcg caacgcttta tcttactatg
     1201 gcaaatgata ttgagaaatt tagaaaaatt ctttggcttt gtttattgtg tattccttta
     1261 ggatatatcg cagcagaggc aggatggata gtggctgaag taggtaggca accttgggct
     1321 atacaagatt taatgcctgt tcatatagca gcaaccgaac ttggcaaagt caatgttcaa
     1381 atttcattct ggatttttgc ggttttattt actgcacttt tgattgcaga gattaagatc
     1441 atgcttactc agattaaaaa aggttttgac gcacatgcag gacatactcc acttatgggc
     1501 aaaggagaaa aataatgttt tttggtttag aacttgaagg ttt
//
LOCUS       DARAII010000220         1510 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.232, whole genome shotgun sequence.
ACCESSION   DARAII010000220 DARAII010000000
VERSION     DARAII010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1510)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1510)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1510
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.232"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(514..945)
                     /locus_tag="SB143_002099"
     CDS             complement(514..945)
                     /locus_tag="SB143_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750582.1"
                     /translation="MPKTDTKPNAKNRIYKAIETWFTKIYLNKIIHNAKDTSIFINKS
                     SCLAFILSIYGKTDENKSKMTPAVIAHINTTKNTFTAKLKRVKNHESIIDLQAKYPKL
                     DIVSAYQFLTLKDKFKITKSEIQDFETLIDILSKNAQKSKK"
BASE COUNT          457 a          124 c          354 g          575 t
ORIGIN      
        1 tcttttgctt ttttgaaaaa atgtaaaaag ttgagccaat ggacataatg caataatata
       61 gcctaaatat aggcgtttaa agcttattgt tgtaggcaaa ttatgctaat gttttaccga
      121 cattttgcga tttgtaaaaa gcttttaaaa tatctatttt gtaggttttt aagcattatt
      181 gataatcgag ttattgagta agatttttgg caaaaataga ctttagagct aaaaactgca
      241 aaattttctt catggcgtgt atttttgatt gtgcttgatt tatagcgata atatgagagc
      301 tagggcttat tttagaagtt cttgcgaatt ttcaaaaatg ctttgcagtt ttgaaatggg
      361 ctgtggtttt tgttttgtgt tgcgattttt gtaggttttt ttgtgttttt ttgattgcga
      421 gtgggtgtct tgaatggata tagggtttaa aatgacagaa ttagccttta aaaggctaaa
      481 atgatttttt taatgggttt tatcgtttta gggttatttt tttgattttt gggcgttttt
      541 tgaaagaata tcgattagtg tttcaaaatc ttggatttct gatttggtga ttttgaattt
      601 gtctttgagt gttagaaact gataggctga aactatatca agctttgggt atttggcttg
      661 taaatcgata atgctctcat ggtttttaac tctttttagt ttggcggtga aagtgttttt
      721 agtggtgtta atatgagcaa taacagcagg tgtcattttg cttttgtttt catctgtttt
      781 gccatagatt gagagtatga atgctaggca actgcttttg ttgataaaga tgctagtgtc
      841 tttggcgttg tgaattattt tgtttaggta tattttggta aaccaagttt ctatagcttt
      901 gtatattcga ttttttgcgt ttggttttgt atctgtctta ggcataaatg ctcctatgta
      961 tttggtagtt ttgtggaatt ataccgtatt tttattaaac ttgggtagta aataagtgtt
     1021 tttatatgtg gggtatagtt tatatcaaaa gtggttagaa ataaacaggg atttaggatt
     1081 gaaatagtgg tgagaaaaag gcaataaatg aggtgataaa tgagagaaag aatgagtata
     1141 aaggctataa ggatttgtgt taaggatagc gttaagatga gatttgaatg cgtagaatgc
     1201 aagataggga ggaatgggag atgggtataa agggggtgat aaatgagggg ataaatgatg
     1261 aaaattattc aatgaaatgt agcggataaa gaagggggaa taaatgaggt gataaagggc
     1321 gagaagaaag cttttctatt taagggggtg aaacggttta ggttaggtat aaaaatggca
     1381 atattattaa cgaagttaat gaatgttggg tacaaaaatt ttttgggtgc aatattaaaa
     1441 aaaagacaaa tcgcaataag ctatgctata aagtccctaa aaataggcat tctttgcttt
     1501 agattaggta
//
LOCUS       DARAII010000221         1500 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.233, whole genome shotgun sequence.
ACCESSION   DARAII010000221 DARAII010000000
VERSION     DARAII010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1500
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.233"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..612
                     /locus_tag="SB143_002100"
     CDS             <1..612
                     /locus_tag="SB143_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BamA/TamA family outer membrane protein"
                     /protein_id="HEF9750583.1"
                     /translation="YELGKTIKSSITPAITFNNTDDYYLPRKGIIASTSLEYAGLGGD
                     QEFLSSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPINQRIYLGGIRSLRGF
                     ESRTVSPKNEWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFDYGMIGNKNLDEIQR
                     MSTGLGIEWITPIGPLQLVFAKPLNDKKGDDTNTFEFNLGTRF"
     gene            612..1328
                     /locus_tag="SB143_002101"
     CDS             612..1328
                     /locus_tag="SB143_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEF9750584.1"
                     /translation="MKQFLDACLKANLQISEYLNNICESDLSFCPELGFDNNQSYKLD
                     LKCEKIFIEHLCNLGQIFSEESGLIGENSPYKIILDPLDGSSNFVSKIPFYGTSAALF
                     KDEEAQSAFICNLANHEILIFDDNKNLKSNLFNPNYSPFLPNHFSQIGIVEKITLCPS
                     LINHLAQNKLKFRSLGATALSIAYAPYFSFVLVLGKTRIFDTAGALMLCKNLYIENNE
                     NFLLISKDKKIFDIILEFLK"
     gene            1343..>1500
                     /locus_tag="SB143_002102"
     CDS             1343..>1500
                     /locus_tag="SB143_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit beta"
                     /protein_id="HEF9750585.1"
                     /translation="MNFADIFSKIRRQQPSTKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCSYH"
BASE COUNT          511 a          229 c          245 g          515 t
ORIGIN      
        1 tatgagcttg gcaaaactat aaaaagctct atcactcctg ctattacttt taacaacact
       61 gatgattatt atctcccaag aaaaggtatt atcgcttcaa caagcttaga atatgcagga
      121 cttggaggag atcaagaatt cctttcatcg agttcaaaat ttaactttta tcaaggtttg
      181 caagattata taggttatga tcttatttat cgttataaag caagttttta taaagtttgg
      241 gatgaaggct atcttccaat caatcaaaga atctatttag gtggtattcg ctctcttcgc
      301 ggttttgaaa gtagaactgt aagccctaaa aatgaatggg gagatgaagt gggtggaact
      361 atagcttttg caaattctgt agagcttagc tttcctttaa tcgatagaat taaacttcgc
      421 ggtagtgtat tttttgatta tgggatgata ggaaataaaa atcttgatga aattcaaaga
      481 atgagtacag gtttaggtat agaatggatc actcctattg ggccattgca acttgtattt
      541 gctaaaccac tcaacgataa aaaaggtgat gataccaata cttttgaatt taacctagga
      601 acacgctttt aatgaaacaa tttctagatg cttgcctaaa agcaaatttg caaattagcg
      661 agtatcttaa caatatttgc gaaagcgatc ttagcttttg tcccgaactt ggctttgata
      721 ataatcaaag ctataagctt gatctaaaat gtgaaaaaat ctttatagag cacctttgca
      781 acctaggtca aattttttcc gaagaaagtg gcttgatcgg agaaaatagt ccttataaaa
      841 tcattcttga tcccttagat ggaagttcaa attttgtttc taaaataccc ttttatggaa
      901 catctgcagc actttttaaa gatgaagaag ctcaaagtgc ttttatttgc aatctagcaa
      961 atcatgaaat tttaattttt gatgataata aaaatttaaa atcaaatctt ttcaatccta
     1021 actattctcc ttttttgcct aatcattttt ctcaaattgg aatcgtagaa aaaataacgc
     1081 tttgcccaag tcttatcaat caccttgcac aaaataagct taaatttcgc tctttgggcg
     1141 ctacagcttt aagcattgct tatgctccat attttagctt tgttttagtt ttaggaaaaa
     1201 ctcgaatctt tgatactgca ggagctttga tgttgtgtaa aaatttatat atagaaaaca
     1261 atgaaaattt ccttctcata agtaaagata agaaaatttt tgatataatc ttggaatttt
     1321 taaaataatt aggtgaatta ttatgaattt tgcagatatt ttttcaaaaa tcagaagaca
     1381 acaacctagc accaaagagg ctccaaatca ttgggtaaaa tgccagagtt gccatgcttt
     1441 aatgtattat aaagaaatag aatcttgttt taatgtatgc cctaaatgct cttatcatat
//
LOCUS       DARAII010000222         1496 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.234, whole genome shotgun sequence.
ACCESSION   DARAII010000222 DARAII010000000
VERSION     DARAII010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1496)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1496)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1496
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.234"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            216..884
                     /locus_tag="SB143_002103"
     CDS             216..884
                     /locus_tag="SB143_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEF9750586.1"
                     /translation="MKFISICNEKGGCGKTTILSNLAIALYEEGKKNLVIDADPQKSL
                     GTFVSIRNQEGHLKKFDYVIKQGEAYFDYILNLKQNNKDYEFILSDTGGRDSKEMRFA
                     LALSDIVIIPIIPSQYDVSVFDRMIEVVKMAKVKNPNLQVFILINLASTNPFLSKKID
                     ELRDYIKSVEQDCIKLLDFVIFQREKYKIFTQMGLGVIEDNKKDDKAYLEMNKLCEFI
                     KKLK"
     gene            894..>1496
                     /locus_tag="SB143_002104"
     CDS             894..>1496
                     /locus_tag="SB143_002104"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750587.1"
                     /translation="MQFKKANIDENTIQDIKEFANNASGETSLQKNEKNTTKRKKKEE
                     NKRNTISFEVYLEDELKNKIQDEVTGTLGSRSEFLKKIILEENIYIQNDKDLIEIYNI
                     VQKEGVSPKSFIRKKLGLDTNIEKFNYDKKNKKKVITAWISNEYREKIYEKANQTHST
                     MRAYAYAKILFYLETKNLFSFEEQMQLTKEANNYDLDFKEF"
BASE COUNT          676 a          142 c          212 g          466 t
ORIGIN      
        1 cgcaaataca aaaagtaggt ttatttaatg acaaaagaat aattattttt gttttgcgat
       61 ttttcaaatt tggcattcta ttctcttgta acttatctta ggaaataaaa tatctaaact
      121 atactatcat ataaaaaaca tataaataaa gtatatatta agtataatat aagtataata
      181 taagtataat ttttaaaatc aagaaggtgg aaagaatgaa atttatatct atctgtaatg
      241 aaaaaggtgg ctgtggaaaa accacaattc tttcaaattt agctatagct ttatacgaag
      301 aaggtaaaaa aaatttagtc atagacgctg atccgcaaaa atctttagga acttttgttt
      361 ccatcagaaa tcaagaagga catttaaaaa aatttgatta tgttatcaaa caaggagaag
      421 cttattttga ttatattctt aatttaaaac agaacaataa agattatgaa ttcattcttt
      481 ctgatacagg cggtagggac agtaaagaaa tgagatttgc tttagcttta agtgatattg
      541 ttatcattcc aatcatacca agtcaatatg atgtaagtgt ttttgataga atgatagaag
      601 ttgtaaaaat ggctaaagtt aaaaatccaa atttacaagt gtttatttta attaatttag
      661 cttccacaaa tccttttttg agtaaaaaaa tagatgaatt aagagactac attaaatcag
      721 tggaacaaga ttgtattaaa ttacttgatt ttgttatttt tcaaagagaa aaatacaaaa
      781 tttttacaca aatgggttta ggagtaattg aagacaataa aaaagatgat aaagcttatt
      841 tagaaatgaa taaactttgt gaatttataa aaaaattaaa ataaggagca aaaatgcaat
      901 ttaaaaaagc taatatagac gaaaatacta tacaagatat aaaagaattt gctaataatg
      961 caagtggaga aacatcactg caaaaaaatg aaaaaaacac aacaaaaaga aagaaaaaag
     1021 aagaaaataa aagaaataca atttcttttg aagtatattt agaagatgag ttaaaaaata
     1081 aaattcaaga cgaagtaaca ggaactttag gaagtcgtag tgagttttta aagaaaatta
     1141 ttttagaaga aaatatttat atccaaaacg ataaagacct tatagaaata tacaatatcg
     1201 ttcaaaaaga aggagttagt cctaaatctt ttattagaaa aaaattagga ttagatacaa
     1261 atatagaaaa atttaattat gataaaaaaa ataagaaaaa agttattaca gcttggatta
     1321 gtaatgaata cagagaaaaa atatacgaaa aagcaaatca aactcattct acaatgagag
     1381 cttatgctta tgcaaaaatt cttttttacc tagaaacaaa aaatttattt agttttgaag
     1441 agcaaatgca attaaccaaa gaagctaata attatgatct tgattttaaa gagttt
//
LOCUS       DARAII010000223         1482 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.235, whole genome shotgun sequence.
ACCESSION   DARAII010000223 DARAII010000000
VERSION     DARAII010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1482)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1482)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1482
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.235"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..215
                     /locus_tag="SB143_002105"
     CDS             <1..215
                     /locus_tag="SB143_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="ATP-binding protein; PstABCS is an ATP dependent
                     phosphate uptake system which is responsible for inorganic
                     phosphate uptake during phosphate starvation; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEF9750588.1"
                     /translation="SSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELI
                     EFGESKEFFENPKQEKTKAYLSGAFG"
     gene            277..>1482
                     /locus_tag="SB143_002106"
     CDS             277..>1482
                     /locus_tag="SB143_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEF9750589.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNNYIYVDDYLARNYNVAIININYHCIGNRPHLGSSFYLDDIDKIILDTSLK
                     TINLNHINVFDINSYENLNNAFIRIDQEIQKLKLNQKLNQNYKLRTHVSFLPSKNEYQ
                     NFGIMQAMDILNAIFYIKENSPFKLMGGGIRTILFGNSYGGYLANLCAKIAPWSIDFI
                     LDNSSFVNLFGNIFRLIGFGKEIDFTRYHGTYDDTLFKNIFLYLSDKTYWNNNKFSKK
                     YFSNARKIIREPLNKEHLIIQSLYPNPKYILYHSIFDERSPFENKENFVHILKELNFK
                     VEFFAVSQVDNKFIKNLNHGMGLSTKLFFKKHLLQILKEPLQDKICKKEVSYKCDELV
                     YTFKEENHQI"
BASE COUNT          589 a          143 c          218 g          532 t
ORIGIN      
        1 ttagctcagg cgtgattgaa gagcttttaa aagaattaag tcataatctt tctatgatta
       61 tggtaacgca caacatgcaa caaggcaaac gtgtggctga ttatactgca ttttttcacc
      121 taggtgagct tatagaattt ggtgaaagta aagaattttt tgaaaatcca aaacaagaaa
      181 aaaccaaggc ttacttaagc ggtgcttttg ggtgagattt attttttgga aatttgatga
      241 tataattaat taaaaatttc caaaaaaagg tttaatatga ttataaacca aatttattct
      301 atagattctt gtgatgatgt agaattaaat atcaaaaggg gaagtaaatt agaatttaga
      361 ttgacttatg atgatagtaa agaaatagaa gctattgttt gtattattcc aggcggtgct
      421 gaagatatga ataactatat ttatgtcgat gattacttgg ctagaaatta taatgttgct
      481 attattaata ttaactatca ttgcatagga aatagacctc atttgggttc tagtttttat
      541 ttagatgata tagataaaat tattttggat actagcttaa aaactatcaa tttaaaccat
      601 ataaatgttt ttgatataaa ttcttatgaa aatctaaata atgcttttat aagaatagat
      661 caagaaattc aaaaattaaa attaaatcaa aaactaaatc aaaactataa attaagaacg
      721 catgtaagct ttttaccatc taaaaatgaa tatcaaaatt ttggcataat gcaagctatg
      781 gatattttaa atgctatttt ttatataaaa gaaaattctc catttaaact aatggggggg
      841 ggtattagaa cgattttgtt tggaaattca tatggcggat atttagcaaa tttatgtgca
      901 aaaatagctc cttggagtat tgattttata ttagataatt cttcttttgt taatttgttt
      961 ggaaatattt ttagacttat aggttttgga aaagaaatcg attttactag atatcatgga
     1021 acatatgatg atactttatt taaaaatata tttttatatt taagtgataa aacttattgg
     1081 aataataata aattttcaaa aaaatatttt tcaaatgcta gaaaaatcat aagagaacca
     1141 ttaaacaaag aacatctaat aatacaaagc ttatacccaa atccaaaata tattttatat
     1201 catagtattt ttgatgaaag atctcctttt gaaaataagg aaaattttgt acatatttta
     1261 aaagaattaa attttaaagt agaatttttc gctgtttcac aagttgataa taagtttatt
     1321 aaaaatttaa atcatggaat gggattgagt acaaaattat tttttaaaaa acatttattg
     1381 caaatattaa aagaaccttt gcaagataaa atttgcaaga aggaagtctc atataaatgt
     1441 gatgagctag tgtatacttt caaagaagaa aatcatcaaa tt
//
LOCUS       DARAII010000224         1469 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.236, whole genome shotgun sequence.
ACCESSION   DARAII010000224 DARAII010000000
VERSION     DARAII010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1469
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.236"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            41..508
                     /gene="lepB"
                     /locus_tag="SB143_002107"
     CDS             41..508
                     /gene="lepB"
                     /locus_tag="SB143_002107"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEF9750590.1"
                     /translation="MRKAIAIFAFSFAFLLILSYLIFYFGGFHFNYTRSMPLGLYKEI
                     NSSTFNKNDIVLLKIPQKKEILLKKIIAVNGDFVEVNTQGVFINENLLPNSKIFSFDS
                     EGNLLEFKPFKRKLKENELFVMGENIKSYDSRYFGVVNILQNEVKKVKLMISF"
     gene            573..968
                     /locus_tag="SB143_002108"
     CDS             573..968
                     /locus_tag="SB143_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraM"
                     /protein_id="HEF9750591.1"
                     /translation="MNKKELIEEIAKKHHIILDENDPILAVVSANEIIFDDFLKKIDL
                     LFIKHKTDLESYKFNILNEIREYSKNNQEALKDILIQAQTNQNTIKASQEKTEDTKEK
                     KNTNINFWIIAIASQIIFLLVGLIIGIII"
     gene            1060..>1469
                     /locus_tag="SB143_002109"
     CDS             1060..>1469
                     /locus_tag="SB143_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9750592.1"
                     /translation="MIISIVNEKGGSGKTTLAVNLSARLAEDGDNVLLIDADPQKSTE
                     VFSDMRSQSNLEPLFSNVSKTGISLGDEIKRMKNAFDSIIVDTGGRDSKEMRKAILSS
                     NIIIIPTIPSQYDVNVLDHMLEIYNEVIEINPNL"
BASE COUNT          597 a          166 c          205 g          501 t
ORIGIN      
        1 ttagatttgg agcaaaataa aggaatgtcg ttataatact atgagaaaag ccattgcgat
       61 atttgccttt tcttttgcgt ttcttttaat actctcatat cttatttttt attttggcgg
      121 ttttcatttt aattatacaa gatcgatgcc tttaggatta tacaaagaga ttaactcttc
      181 cacttttaac aaaaacgata ttgtgctttt aaaaatacca caaaagaaag aaattttatt
      241 aaaaaagatt atcgcagtaa atggcgattt tgtagaagtt aatacgcaag gtgtttttat
      301 taatgaaaat cttttgccta attctaaaat tttttcattt gatagcgaag gtaatttact
      361 agaatttaaa ccctttaaac gcaaattaaa agaaaatgaa ctttttgtaa tgggcgaaaa
      421 tataaaaagt tatgatagta ggtattttgg agttgttaat atactccaaa atgaagtaaa
      481 aaaagttaaa ttaatgatat cattttaata ttaatataat attaaaatat taattattta
      541 atatcaaaat aatatcataa aaggaaaata aaatgaataa aaaagaactt attgaagaaa
      601 ttgcaaaaaa acaccatata atcctagatg aaaatgatcc tatacttgca gtcgttagtg
      661 caaatgaaat catctttgat gattttttaa aaaaaataga tctactcttt ataaaacaca
      721 aaacagattt agaaagctat aaattcaata tattgaatga aataagagaa tatagcaaaa
      781 acaatcaaga agctttaaaa gatattttaa tacaagcaca gacaaatcaa aacacaatta
      841 aggcatcaca agaaaaaaca gaagacacca aagaaaagaa aaatacaaat attaattttt
      901 ggattatcgc tattgctagc caaattattt ttcttcttgt tggtttaatc ataggtatca
      961 taatataata ttattttatt attcttttaa tattgtatta atattattat gatattatta
     1021 tgatattatt ttaatttaaa ctaaaaacaa ggttttatta tgattatatc catagtaaat
     1081 gaaaaaggcg ggagtggtaa aactacatta gcagtaaatc tttccgcaag attagccgaa
     1141 gatggagaca atgttttact tattgacgca gatccgcaaa aatcgactga agttttttcg
     1201 gatatgagaa gtcaatcaaa tttagagcct ttattttcaa atgtttcgaa aacaggcatt
     1261 agtttaggcg atgagattaa aagaatgaaa aatgcttttg atagcattat agttgataca
     1321 ggcggtaggg atagtaaaga aatgcgaaaa gctatacttt catcaaatat cattatcatt
     1381 cctacaattc caagtcaata cgatgttaat gtgctagatc atatgctaga aatttataat
     1441 gaagtgattg aaattaatcc taatttatt
//
LOCUS       DARAII010000225         1464 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.237, whole genome shotgun sequence.
ACCESSION   DARAII010000225 DARAII010000000
VERSION     DARAII010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1464)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1464)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1464
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.237"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..241)
                     /locus_tag="SB143_002110"
     CDS             complement(<1..241)
                     /locus_tag="SB143_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEF9750593.1"
                     /translation="MDLKSLENKRLYILKRLGILKFLSVVEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQIDALNLFL"
     gene            complement(241..>1464)
                     /locus_tag="SB143_002111"
     CDS             complement(241..>1464)
                     /locus_tag="SB143_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEF9750594.1"
                     /translation="PSGTNDNPLQLQVFTLGYDNFVGKIGIARIFNGVVKKNQSVMLA
                     KADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIAGFEALDVGDSVVDPNNPMPLD
                     PLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERLEAEMKTNIAMKYESTGEGKFK
                     VSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDGVKTEPFEHLVIDVPEEFSGAV
                     IEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFRSQFLTDTKGEGVMNHSFLEFR
                     PFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLFIEPQTKVYTGMIIGEHSRPND
                     LDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERALEWIEEDELVEVTPVNVRVRKR
                     YLDPTQRKRMEKAKS"
BASE COUNT          415 a          321 c          230 g          498 t
ORIGIN      
        1 gcaaaaataa atttaaagcg tcaatttgta attctttttg tgcaagtttt agttttttgg
       61 ctgtaaaacg aaagaaaaaa acacctacaa aaacagctaa aatcactgca attaaggcat
      121 ctcttataaa aacaaaggct aaaaagccca caagtaaagc ttctacaacg cttaagaatt
      181 ttaaaattcc taagcgtttg agtatataaa gtcttttatt ttctaagctt tttaagtcca
      241 ttaagatttt gctttttcca ttctttttct ttgagttgga tcaagatagc gtttgcgaac
      301 acgcacattt acaggcgtaa cttctacaag ttcatcttct tctatccact ctaaagctct
      361 ttcaaggctt aattttctag gcggtacaag cttgatcgca tcatcgcttc cgcttgctct
      421 tacattggta agattttttc ctttgatagg attaacatct aagtcatttg gacgagagtg
      481 ctcacctata atcatccctg tatatacttt ggtttgaggt tctatgaaaa gcaccccgcg
      541 ctcttgaagg ttaaacaaag aataccctaa agccacgcca ttttccatag aaattaacgc
      601 tccattatta cgcttttcaa ccgcaccgct aaaaggacgg aattctaaaa agctatgatt
      661 catcacccct tcgcctttgg tatcggttaa aaattgagat ctaaagccta taagtccgcg
      721 tgcaggaatt tcaaattcaa gtcttgtttg tccatcgcct gtaggtgcca tagttttcat
      781 ttcagctttt ctttttccaa gcttttctat cactgcaccg ctaaattctt caggcacatc
      841 gataactaaa tgttcaaatg gttctgtctt aaccccatct tcaactttta cgataacttc
      901 aggtcttccc atgcaaaact caaagccctc acgacgcata ttttcagcta aaatagtgat
      961 ttgaagttcg cccctaccac ttactttaaa tttgccttcg cctgtgcttt cgtatttcat
     1021 cgcgatattg gttttcattt cagcttctaa gcgttcagcg attttgtttg aagtcacatg
     1081 ctttccttca gttcctgcta agggaccatc atttactgaa aatactatgc ttaaggttgg
     1141 ttcttcgatg tgtaaaggat caagtggcat aggattgttt ggatctacaa cgctatcgcc
     1201 cacatctaaa gcttcaaaac ctgcgatcgc aacgatatcg ccactgcctg cttcttctat
     1261 atccattttt tctaagccca taaagccaat gagttttgaa attctaccat ttactttagt
     1321 accatcggct tttgcgagca ttacactttg atttttcttt acaacgccgt tgaaaattct
     1381 agcaatgcct attttaccta cgaagttatc atatcctaaa gtaaagactt gaagttgtaa
     1441 aggattgtca ttagtaccgc ttgg
//
LOCUS       DARAII010000226         1460 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.238, whole genome shotgun sequence.
ACCESSION   DARAII010000226 DARAII010000000
VERSION     DARAII010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1460
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.238"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            593..>1460
                     /locus_tag="SB143_002112"
     CDS             593..>1460
                     /locus_tag="SB143_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="HEF9750595.1"
                     /translation="MSNIVKYHNDFNKIKLPSFTEQEQNLLCFLFTKIKEKKENEIFS
                     IYPKDLIGFSEKNLSNKEITEILTSFEEKFFKADFTIIVKDEVKNLIGKMRVNLFNHF
                     VIWKEFRGEYNMEIGMYDAWEEFTRIDIEVNKHFEYLINQLTANFTAFELAEFIALSG
                     KYTKSLYRLLKQYRTTGKVYFEWEEFKRIMDIPENYEIHNIDKWILKPAIKELSKERN
                     LFDQIRVPFKNLAYEKEKAKGTRGRGGKVSGISFTFKPENIQMQKLENESQKIMSDEQ
                     KYLKILNNMKLNQ"
BASE COUNT          551 a          188 c          265 g          456 t
ORIGIN      
        1 gggtttagca gataattttc ttttttggtg ctttagcaaa tcgcacctgt taaggtgcta
       61 tgatttgcga aaagggggtg cgggggctgt ctgagtgcgt agcacggaag acggacaaaa
      121 cccaccgccc tagaaaaaaa ttactcaact ttttttgttt tttctctcgc gcgcgtacgc
      181 gtacgcgatt ttttatattt tttatatatt tttcttattt ttagggggct ttctaagccc
      241 tatatgatgg gggctagcga aatattaaaa gtagaaattg ggagtattaa aagtagaaat
      301 tgggagtatt aaaagtagaa attgggagta ttaaaagtag aaattgggag tattaaaagt
      361 agaaatatat ttacaattta cttttaatat gctacaataa aaaatccgcc ttgagttttc
      421 actcttggcg gaaatttatc aatcaaggct aactatgaaa cgacatagta agcgttttgt
      481 gagattatac ctaaatttta ggttttttaa gcttaaagtt gaagtatttt tctagcaaaa
      541 ccgcaggggc ggaaaagccc cttgccttga ttgtcttact ttggatatgc aaatgagcaa
      601 tatagttaaa taccataatg attttaataa aatcaaactt cctagcttta cagagcaaga
      661 gcaaaattta ttatgttttc tatttacaaa gataaaagaa aaaaaagaaa atgaaatatt
      721 ttctatatat ccaaaagatt tgataggttt ttcggaaaaa aacctatcaa ataaagaaat
      781 aacggaaatt ttaacatctt ttgaagaaaa atttttcaaa gctgatttta cgatcattgt
      841 aaaagatgaa gttaaaaatt taattggaaa aatgagagta aatttattta atcattttgt
      901 aatatggaaa gaatttaggg gcgaatacaa tatggaaata ggaatgtatg atgcttggga
      961 agaatttact cgtatagata tagaagttaa taagcatttt gaatacctta ttaatcaatt
     1021 aaccgctaat tttacagcct ttgaattagc cgaatttata gcccttagcg gtaaatacac
     1081 taaatcactt taccgccttt taaaacaata caggaccaca ggtaaggttt attttgaatg
     1141 ggaagagttt aaaaggatta tggatatacc agaaaattac gaaatacaca atatcgacaa
     1201 atggatttta aaacctgcta tcaaagaact ttctaaagaa cgcaatcttt ttgaccaaat
     1261 cagagtgcct tttaaaaatc ttgcttatga aaaagaaaaa gcaaaaggaa caaggggcag
     1321 gggcggaaaa gtttcaggta ttagctttac ttttaaacct gaaaatatcc aaatgcaaaa
     1381 gctagaaaat gaaagtcaaa aaataatgag cgatgagcaa aaatatttaa agattttaaa
     1441 caatatgaaa cttaatcaag
//
LOCUS       DARAII010000227         1446 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.239, whole genome shotgun sequence.
ACCESSION   DARAII010000227 DARAII010000000
VERSION     DARAII010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1446
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.239"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>1446
                     /gene="flgE"
                     /locus_tag="SB143_002113"
     CDS             <1..>1446
                     /gene="flgE"
                     /locus_tag="SB143_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEF9750596.1"
                     /translation="EAIAYINTFTAPTDTRDGTGVKAVKKADGSGIEFVNDNADGTTD
                     NMKNIDLVVNQTNTAGELHNLTYAQVTDTFTAQLQKNNGNSNWITGNPAGGATSERVQ
                     VITAHKYIYSSNPVSLPPMYNPDGGPAYQPGNNANTPPTDPASLNYWNAIQGGLKNTT
                     ARTFRTTEDLRELLQRDARYGVDYDGDGSSGHDADDINQAVKVVVNDSGHFAISNANE
                     NSTIPGSAINGQAAPTQTTPKNMSFNITAYSNKQGTVSTNDAFTKIFKAFDGPLVIGN
                     QIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEI
                     NTTGEGPTNIIVGTARFNNDGSLANYTPRTINFSPNNGAAPNQQIKLSFGTSGSNDGL
                     VSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANN
                     SGLEEIGGNLFKVTANSGAIVVGEAGTGGRG"
BASE COUNT          513 a          245 c          291 g          397 t
ORIGIN      
        1 tgaagctata gcttatatca atacctttac cgctccaacc gatacaagag atggaacagg
       61 ggtaaaagca gttaaaaaag cagatggatc gggcatagaa tttgttaatg ataatgctga
      121 tggtactaca gataatatga aaaatattga tttagttgta aatcaaacta atacagctgg
      181 agaattacat aatttaactt atgctcaagt tacagataca tttactgcgc aattgcaaaa
      241 aaataatgga aattcaaatt ggattactgg aaatccagca ggtggtgcta caagtgaaag
      301 agtgcaagtt atcactgcac ataaatatat ctacagttca aatcctgtaa gtttgccacc
      361 tatgtacaat cctgatggag gtccagcata tcaaccaggc aataatgcca atactcctcc
      421 tacagatcct gcctctttaa attattggaa tgctatacag ggaggtttaa aaaataccac
      481 agcaagaacc tttagaacca cagaggattt aagagaactc ttacaaagag atgctagata
      541 tggggtggat tatgatggag atggaagttc aggacatgat gctgatgata ttaatcaagc
      601 tgtaaaagta gtagttaatg atagcggaca ttttgccatt tctaatgcaa atgaaaattc
      661 tactatacca ggtagtgcta ttaatggtca ggctgctccg actcaaacaa ctccaaaaaa
      721 tatgagcttt aatataactg cttatagtaa taaacaagga actgtaagta ctaatgatgc
      781 ttttactaaa atttttaaag ctttcgatgg tcctttggtt ataggaaatc agatcaaaga
      841 aagcgagcaa cttaagcttt ctgctttttc agcaggactt gaaatttatg attctttagg
      901 ttcaaaacac actttagaag tgcagtttgt taagcaaagc accactcaag atgggggtaa
      961 tgaatggcaa atgatcatcc gtgtacctga acctgcagag attaacacta caggtgaagg
     1021 tcctacaaat atcatcgtag gaacagcaag atttaataat gatggatctt tagctaatta
     1081 tacaccaaga acgataaatt tttcacccaa taacggtgcc gcaccaaatc aacaaatcaa
     1141 actttccttt ggaacaagtg gaagcaatga tggccttgta agctcaaatt ctgcttcaac
     1201 tctaacagga caggcaactg atggttatac ttcaggtaac ttaaaacctg atgctatccg
     1261 tgtggatgac aaaggtaata tcttaggtga atttactaat ggcaaaacct ttgctgtagc
     1321 aaaaatagca atggcttcag tggcaaataa ctcaggtctt gaggaaattg gtggaaatct
     1381 tttcaaagtc actgcaaata gtggggctat agtagtaggc gaagcaggaa caggaggtcg
     1441 tggtga
//
LOCUS       DARAII010000228         1440 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.240, whole genome shotgun sequence.
ACCESSION   DARAII010000228 DARAII010000000
VERSION     DARAII010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1440)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1440)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1440
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.240"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..259
                     /locus_tag="SB143_002114"
     CDS             <1..259
                     /locus_tag="SB143_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEF9750597.1"
                     /translation="WQEISQFVRLGVRILKSELHAGGVNIGMNLSKDAGAGIAPHCHY
                     HLVPRWAGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNVK"
     gene            249..1247
                     /gene="mnmH"
                     /locus_tag="SB143_002115"
     CDS             249..1247
                     /gene="mnmH"
                     /locus_tag="SB143_002115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEF9750598.1"
                     /translation="MLNEVDFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKVRGASYICQNMSKHILELAHKFRIGDKIGIYCSRGGLRSKS
                     IAVILSELGYRVVRLKGGFKAYRSFLAHYFDNEINLDFFALCGNTGCGKTELLELLPH
                     HLNLEKMANHLGSSFGDILGTQPTQKAFEASLFHTLNSLKDFIFIESESRKIGEIVLP
                     LKLYEKMQKAFKIHCFCSLEKRIDRIQKIYQEKMTPLKFKECLAKISPYISVNLRQDL
                     LKSYEQREWQRLIALLLAYYDKSYKKPQKIDFELNTDDIFKAKEELLGYFKTQLLF"
BASE COUNT          488 a          184 c          269 g          499 t
ORIGIN      
        1 ttggcaagag ataagtcaat ttgtgcgtct aggggtaaga attttaaaaa gtgaactcca
       61 tgcaggtggg gtaaatatcg gtatgaattt aagtaaagat gcgggtgctg ggatagctcc
      121 tcattgtcat tatcacctag tgccgcgttg ggcaggggat actaatttta tcaccactat
      181 aggagagact agggtttgtg gtaccaatat agaacaagtt tatcaaaaac ttgttttggc
      241 gtttaaaaat gttaaatgaa gtagattttg cagaatttca aaaagaaaat ttctctcttt
      301 taatcgatgc aagaagccct agggaatttt tacattctca tttgataggg gcgttgaatt
      361 tttatgcttt aaatgatgaa gaatatcaag aaataggaac aatttataaa aaaaatcaag
      421 ctttggctaa ggttaggggt gcgagttata tttgtcaaaa tatgtcaaag catatcttag
      481 agcttgccca caaattccgt ataggagata agatcggaat ttactgctct cgtgggggtt
      541 tgcgttcaaa atctattgca gtgattttga gcgaattggg ctatagagtg gtgcgtttaa
      601 agggtggctt taaagcttat agaagttttt tggcgcatta ttttgataat gaaataaatt
      661 tagatttttt tgctctttgt ggtaatacag gctgtggaaa gacagaactt ttggagcttt
      721 tgccccatca tttaaattta gaaaaaatgg caaatcatct aggctcttct tttggcgata
      781 ttttaggtac tcaacctacg caaaaagctt ttgaagcaag cctttttcat actttaaatt
      841 ctttaaaaga ttttatcttt atagagagtg aaagtcgtaa aataggcgaa atagttttgc
      901 ctttaaagct ttatgaaaaa atgcaaaaag catttaaaat tcattgtttt tgttctttag
      961 aaaagcgcat agacaggata caaaagatct atcaagaaaa aatgactcct ttgaaattta
     1021 aagaatgtct tgctaagatc agtccttata tcagtgtaaa tcttcgtcag gatttgctaa
     1081 aaagttatga gcaaagagaa tggcaaaggc ttattgcctt gcttttggct tattatgata
     1141 agagttataa aaagccacaa aaaatagatt ttgagctaaa cactgatgat atcttcaaag
     1201 ccaaagaaga gcttttaggc tattttaaaa cgcaattgct tttttaatac tagataattt
     1261 ctacttttaa tttaaaaaaa cttttactaa atcatcaaaa ttttctttat tatcttgcaa
     1321 gaattctttt ttattgtttt ggtttagccc caaattttta ttttaatgct agtaaatttg
     1381 aattatagag aagtaaaata ttttttaaaa tacctattta tagtaattta agataaaaaa
//
LOCUS       DARAII010000229         1402 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.241, whole genome shotgun sequence.
ACCESSION   DARAII010000229 DARAII010000000
VERSION     DARAII010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.241"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            85..747
                     /locus_tag="SB143_002116"
     CDS             85..747
                     /locus_tag="SB143_002116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEF9750599.1"
                     /translation="MSYETIINKKNKMNGLKLLKLIDKESIKVVFFDPQYRGVLDKLS
                     YGNEGKSRGKERSALPQMTKENILTFINYIEQILQPNGYLFLWVDKFHLFECKEWINN
                     FHSIDIVDMITWDKQKIGMGYRSRRRSEYLIIIQKNPKKAKSTWNIHNIPDVWIEKIN
                     NKIHTHSKPIELQKQLILATTQEEDIIVDPASGGYSVLKACKETNRKFLGCDLKFGDT
                     HE"
     gene            740..>1402
                     /locus_tag="SB143_002117"
     CDS             740..>1402
                     /locus_tag="SB143_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEF9750600.1"
                     /translation="MSKISNQQGRDVQKNGISGYTRVIGNNELGQLLSRVQACVISNG
                     NELEKLLISRCSIIEDIDIFIKNVEKNNIQQGTFLCTKRILKQTQKYKEVIKGIEPDM
                     IIFIVSNFRICKIIELKDGDMFDTKKVKGEKANLITFTEKFGAKIPFSTDYYICCFNQ
                     NNKEVIKEGMKNEFELEHIMTGKELCEILNIEYQEILNIRKKDMEDNFNYFIEELLKI
                     PEV"
BASE COUNT          618 a          142 c          216 g          426 t
ORIGIN      
        1 atttatacta tggataaaaa ttttccaaat ttgaaaatac ctataaaaag atatggcgag
       61 attgatattt aaggaagaat tggtatgtca tacgaaacta ttataaataa aaaaaacaag
      121 atgaatggtt taaaattatt aaaactaatt gataaagaaa gtataaaagt agtttttttt
      181 gatccacaat acagaggtgt tttagataaa ctttcttatg gtaatgaagg aaaaagtaga
      241 ggaaaagaac gatctgcact acctcaaatg acaaaagaaa acatattgac ttttattaat
      301 tatatagaac aaattttaca acctaacgga tatttatttt tatgggtaga taaatttcat
      361 ttatttgaat gcaaagaatg gataaataat tttcattcca ttgatatagt agatatgata
      421 acttgggata aacaaaaaat tggtatggga tatcgctcaa gaagaagaag tgaatatcta
      481 attataattc aaaaaaatcc aaaaaaagct aaaagtactt ggaatattca taatattcca
      541 gatgtttgga ttgaaaaaat aaacaataaa attcatacgc actcaaaacc gatagagctt
      601 caaaaacaat taattttagc gacaacacaa gaagaagata ttattgttga tccagctagt
      661 ggtggatatt ccgttttaaa agcctgcaaa gaaactaatc ggaaattctt aggatgtgat
      721 ttaaaatttg gagatactca tgagtaaaat atcaaatcaa caaggtagag atgttcaaaa
      781 aaatggaata tctggatata caagagttat tggaaataat gaattaggac agcttctctc
      841 aagagttcaa gcttgtgtaa tttctaatgg taatgaatta gaaaaattat taatcagcag
      901 atgttctata attgaagata tagatatctt tattaaaaat gttgaaaaaa ataatataca
      961 acaaggaact tttctttgca ctaaaagaat tttaaaacaa acacaaaaat acaaagaagt
     1021 aataaaaggc attgagcctg atatgataat tttcattgtt agcaatttta gaatatgtaa
     1081 aataatagaa ctaaaagatg gtgatatgtt tgatacaaag aaagtgaaag gcgaaaaagc
     1141 taatcttata acatttactg aaaaatttgg tgcaaagata ccattctcaa cagattatta
     1201 tatttgttgt ttcaatcaaa ataataaaga agttattaaa gaaggaatga aaaatgaatt
     1261 tgaattagaa catattatga caggtaaaga actctgcgag atattaaata ttgaatacca
     1321 agaaatttta aatattcgaa aaaaagacat ggaagataat tttaactatt tcatagaaga
     1381 acttctaaaa atacctgaag tt
//
LOCUS       DARAII010000230         1394 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.242, whole genome shotgun sequence.
ACCESSION   DARAII010000230 DARAII010000000
VERSION     DARAII010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.242"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..409)
                     /locus_tag="SB143_002118"
     CDS             complement(<1..409)
                     /locus_tag="SB143_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEF9750601.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIE"
     gene            complement(409..>1394)
                     /locus_tag="SB143_002119"
     CDS             complement(409..>1394)
                     /locus_tag="SB143_002119"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEF9750602.1"
                     /translation="KLDGYEKLIPEYQTPKVTKKEIDEKKEELLKRFATPEAIKTKRA
                     LKEGDFAKFDFEGFVDGKAFDGGKAENYVLEIGSKQFIPGFEEGMVGMKSGEEKDVKV
                     TFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKLK
                     EQIKNEKLFKLVNDELKAKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEIE
                     ELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRYG
                     MNPKEHLENYKKQGALPAVKMALIEEKLFNDIFMPKTEKSEKVSKKEKEDK"
BASE COUNT          416 a          270 c          166 g          542 t
ORIGIN      
        1 tttctatatc tgtggcttga cctctagctc cacctaaagg ttgatgaatc ataatacgtg
       61 aattaggcaa agcaaaacgt tttccttctg cgccacaact aagcaaaaat gctcccatag
      121 aagcagcttg tcctatacaa atcgtacaaa catcaggctt gatataattc atagtatcat
      181 aaatactaaa accacttgta ataacaccac ctggagaatt gatataaaga taaatatctt
      241 ttgtaggatc ttcagcttct aaaaaaagaa gttgtgctac gatagaagcg gcaagttcat
      301 catgaatttc accacttagc ataataattc tatcttttaa aaggcgtgaa taaatgtcat
      361 aacttctttc accacgacta gatttttcaa taacataagg aataaacatt atttatcttc
      421 tttctctttt ttgctcactt tttccgattt ttctgttttt ggcataaaaa tatcattaaa
      481 aagtttttct tcaattaaag ccattttcac agcaggcaaa gctccttgtt ttttatagtt
      541 ttctaaatgc tcttttggat tcataccata gcgatatgct tcaaaataaa tcgcttgaat
      601 caattcttga tcatttactt caatcttacg caattttgca agttcatcaa tgataaaagt
      661 aagttttaca cttttttgtg cttcttcttt aaaagaatca cgtttttctt gatatttttc
      721 tttacttgct ttaagctctt caatttcttt ttcgctaaaa gtattaaaag ccgcacgcat
      781 ctgcatatca gtttcttgtt ctactatgcc tttaggtaaa tcaaaattat atttttcaat
      841 caaagcatca gcaaatttag cttttagctc atcatttaca agcttgaaaa gtttttcgtt
      901 tttgatttgc tcttttaatt tttcatctaa aacttcaaca ctagcttttt cttctcctgg
      961 taaaagtttt ttaagcattt catcatcaag ttctggaatt ttaagctctt gaatttcatg
     1021 cagttttact ttaaatactg catctttacc cgctaaatgc gctgcaccgt attctttagg
     1081 aaaagttact tttacatctt tttcttctcc gcttttcatt cctaccatac cttcttcaaa
     1141 acctggtatg aattgtttag aacctatttc taaaacataa ttttcagctt tacctccatc
     1201 aaaagctttc ccatctacaa aaccctcaaa atcaaatttt gcaaaatcac cttcttttaa
     1261 agctcttttg gttttaatag cttcaggagt agcaaagcgt tttaataatt cttctttttt
     1321 ctcatcgatt tcttttttag ttacttttgg agtttgatac tcaggaatca atttttcata
     1381 gccatcgagt ttaa
//
LOCUS       DARAII010000231         1370 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.243, whole genome shotgun sequence.
ACCESSION   DARAII010000231 DARAII010000000
VERSION     DARAII010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1370
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.243"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..141
                     /locus_tag="SB143_002120"
     CDS             <1..141
                     /locus_tag="SB143_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEF9750603.1"
                     /translation="KENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKDKIKY
                     KS"
     gene            complement(162..>1370)
                     /locus_tag="SB143_002121"
     CDS             complement(162..>1370)
                     /locus_tag="SB143_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein B"
                     /protein_id="HEF9750604.1"
                     /translation="LAVFGIHTYFWAEVVFWAVVLLLGVMFAFAPKFGSFDKELNGEK
                     FRKFTKFSFAAVLISTLIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSTEGW
                     NGLWQNISFLGKRDVKAPDYAFAPASEKLGIKFDNNTNNSPFAEIDDELKIINEQTIN
                     FDKAINTLDYINDEFVASSKWDVAFLDNNFSVKEGFELDPYFSATIDPIIGIIPYKEN
                     KFLLMGSNKSFLRFAKNPNADETLQYADFIKGNDKFEGQGESLGRGRLDTVRAKFNHV
                     ASMTTDGNYLYLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVT
                     SMTFKDGEIYALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQ
                     DGANKLYTLN"
BASE COUNT          463 a          227 c          218 g          462 t
ORIGIN      
        1 aaagaaaatg tacctttaga acttacttgg tcttgttatg agagtgaaga tgaagcttgt
       61 ggggagtgcg atagttgttt gcttcgttta agaggttttg aaaaagcagg atttaaagat
      121 aagattaaat ataagtccta gttttcacta ggacttaaag cttagtttaa agtataaagc
      181 ttgtttgctc catcttgata agaaagaata ttgatttttc catctttaaa gaaaatgctt
      241 ctagcattag tgatagagct tgggaaagcg atagttttca ctacttcttc tttgactgga
      301 tcaattacgg caatcacatt gtgatttttg ctaagtgcat aaatttcccc atctttaaaa
      361 gtcatagaag ttacataaag atcgcctaaa gttttacctt ctttaagatt tgcttttgga
      421 gtaaattctc ctgaaagaac acgatctttt aaagaaactt tagagattac aaaagtttta
      481 gcgtctttgt tgtttggaac agttgcaaga taaagataat ttccatctgt tgtcatactt
      541 gctacatggt tgaattttgc tctaactgta tcaagtcttc cacgacctaa actttcgcct
      601 tgaccttcaa atttatcatt tcctttaata aaatctgcat attgtaaagt ttcgtccgca
      661 tttggatttt tggcaaatct taggaaagat ttattagatc ccatgagaag aaatttattt
      721 tctttataag gaatgatacc tatgatagga tcgatagtag ctgaaaaata aggatcaagc
      781 tcaaaacctt ctttaacgct aaaattatta tctaagaaag ccacatccca tttagaactt
      841 gctacaaatt catcattaat ataatcaaga gtattgattg ctttatcaaa atttatggtt
      901 tgttcattga taattttaag ctcatcgtca atttctgcaa atggagaatt atttgtatta
      961 ttatcaaatt ttatacccaa tttttcactc gcaggtgcaa aagcataatc aggagcttta
     1021 acatcacgct ttcctaagaa agaaatattt tgccataaac cattccaacc ctctgtgctc
     1081 caaatgatat attttggatt aagactaaat cttactggat caccttgtcc tacataagga
     1141 ggaattcctg tgcttacaaa agcttgaaaa acatttgatg caacgataag ggtgctgatt
     1201 aaaactgctg cgaagctaaa tttagtaaat tttctaaatt tttcaccgtt taattctttg
     1261 tcaaaagatc caaatttagg agcaaaagca aacatcacac ccaaaagcaa gactacagcc
     1321 caaaagacta cttcagccca aaaataagta tggataccaa aaactgccaa
//
LOCUS       DARAII010000232         1365 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.244, whole genome shotgun sequence.
ACCESSION   DARAII010000232 DARAII010000000
VERSION     DARAII010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1365
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.244"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..434
                     /locus_tag="SB143_002122"
     CDS             <1..434
                     /locus_tag="SB143_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEF9750605.1"
                     /translation="KGQVYDYDLEALMFLSYENDEENELVLEKLSVISGTIPTACVCV
                     RIKEELKTEACTGNGPIEAVFNCISRITGLNPVLKAYSINAKSSGVDAQGQVDVDLEF
                     KGRKFHGKGLSTDVIEASAQAFISAYNAIYRSLKVEERKAV"
     gene            431..>1365
                     /gene="leuB"
                     /locus_tag="SB143_002123"
     CDS             431..>1365
                     /gene="leuB"
                     /locus_tag="SB143_002123"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEF9750606.1"
                     /translation="MNTYKIAVLPGDGIGPSVMKEALKILNFVAQKHGFKLETKEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLRHASPLKDEIIQKGVDILCVRELTGGIYFGKQELGKESAYDTEI
                     YTKAEIERITRLAFESARIRNKKVHLIDKANVLASSILWRDVVDQIAKEYEDIKLEYM
                     YVDNAAMQIIKNPSTFDVMLCSNLFGDILSDELAAISGSLGLLCSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEKA"
BASE COUNT          473 a          183 c          299 g          410 t
ORIGIN      
        1 aaaaaggaca ggtttatgat tatgacttag aggctttaat gtttttaagt tatgaaaatg
       61 atgaagaaaa tgaattagta cttgaaaaat taagcgtaat cagcggcact atcccaacag
      121 cttgtgtttg tgtgcgtata aaagaagaat taaaaactga agcttgtacc ggaaatgggc
      181 ccatagaagc ggtgtttaat tgcatctcta gaatcacagg cttaaaccct gttttaaaag
      241 catatagcat taatgcaaaa agttcaggtg tggatgcaca agggcaagtg gatgtggatt
      301 tagaatttaa agggagaaaa tttcatggca aagggctttc aacagatgtt atagaagcat
      361 cagctcaagc ctttatcagt gcttacaatg caatttatcg atctttaaaa gttgaagaaa
      421 ggaaagcagt atgaatactt ataaaatagc agttttgcca ggagatggca tagggccttc
      481 agtgatgaaa gaggctttaa aaattttaaa ttttgtcgcc caaaaacacg gctttaaatt
      541 agaaacaaaa gaagcgaaga taggtggggc aagtatagat gcctatgggg tagcattaag
      601 cgatgagact ttaaagcttt gtgagcaaag cgatgctatt ttgtttggtt cagtaggagg
      661 acctaagtgg gataatctac ctatagatca aagacctgaa agagcttcgc ttttaccttt
      721 aagaaagcat tttaatttat ttgcaaattt gcgtccttgt aaaatttatg aaagcttaag
      781 acatgcttcg cccttaaaag atgaaattat ccaaaaaggt gtggatatct tgtgcgttag
      841 agagcttaca ggcgggattt attttggtaa gcaagaattg ggcaaagaaa gtgcttatga
      901 tactgaaatt tacactaaag cagagataga aaggattaca cgccttgctt ttgaaagtgc
      961 aagaataaga aataaaaaag tgcatctaat tgataaggca aatgttttag caagttctat
     1021 tttatggcgt gatgtagtag atcaaattgc aaaagaatac gaagatatca agctagaata
     1081 catgtatgta gataatgcag ctatgcaaat tattaaaaat cctagcactt ttgatgtaat
     1141 gctttgttct aatctttttg gcgatatttt aagcgatgaa ttagcagcta taagtggatc
     1201 tttgggcttg ctttgttctg cgagtttaaa tgataaaggt tttgggcttt atgagccagc
     1261 aggtggttca gctcctgata tagctcattt aaatatagcc aatcctatag cccaaatttt
     1321 aagtgctgct ttgatgttaa aatatagctt taaagaagaa aaggc
//
LOCUS       DARAII010000233         1347 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.246, whole genome shotgun sequence.
ACCESSION   DARAII010000233 DARAII010000000
VERSION     DARAII010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1347
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.246"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            4..447
                     /locus_tag="SB143_002124"
     CDS             4..447
                     /locus_tag="SB143_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002798245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750607.1"
                     /translation="MKEVKGGYLVRFKFFKDRPNLISEVYAIADFSEYELSNLNKGLC
                     GAGEDKCQNPSRDRLFAWLQVSANSPADYRPVYKVKRQIKYSNLGQPYVLFTYGVAAY
                     DRKNGQIYQYNSSPMLNNNRIIREITHQYKYAIEDAMGGWNPRLF"
     gene            475..1167
                     /locus_tag="SB143_002125"
     CDS             475..1167
                     /locus_tag="SB143_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750608.1"
                     /translation="MVNFDTQYTNINHLSNNMNNKKVVSKNEDTYFNSVIKKFNFSEK
                     TKEEQGYNGSPDVKEVENSLYKRYMEDKLSKDEIKILNEFGTDYLVEGVDLTALHRRK
                     VDLLKTLTSMNEFEKIWGAERAQREKQFFNELGKPLTQEDIDRFLANKNNQKEDKKTF
                     KPIQAESKNKETYKDDNVRNELVKKLLEGKFSTSDELELLFGMKFSDDDTGEFNKILS
                     LNSAPKSIDIKA"
BASE COUNT          542 a          168 c          219 g          418 t
ORIGIN      
        1 gagatgaaag aagtgaaggg tgggtattta gtccgtttta aattttttaa agatcgtcca
       61 aatttaattt cagaagttta tgcaattgca gatttttcag aatacgaact tagcaatctt
      121 aacaagggtc tatgtggtgc aggagaagat aaatgtcaaa atcctagtag agacagatta
      181 tttgcttggt tgcaagtcag tgcgaattcc cctgctgatt atcgtcctgt atataaggta
      241 aaaagacaaa ttaaatattc aaatttagga caaccttatg ttttatttac ttatggagtt
      301 gctgcttatg atagaaaaaa tggtcaaatt tatcagtata attcctctcc tatgctaaat
      361 aacaatagaa ttataagaga aatcacacat caatataagt atgcaataga agatgccatg
      421 ggtggttgga atccaagatt gttttaataa aatattataa aaaaagggtt ttctatggta
      481 aattttgata ctcaatatac aaatattaat catctaagca ataacatgaa taataaaaaa
      541 gttgtatcta aaaatgaaga tacttatttt aattccgtaa taaaaaaatt taatttctct
      601 gaaaaaacca aagaagaaca agggtataat ggatctcctg atgtaaaaga agtagaaaac
      661 tctttatata aaagatatat ggaagataaa ctaagcaagg atgaaataaa aatacttaat
      721 gaatttggca cagactatct tgtagaaggc gtagatttga ccgcacttca tagacgaaaa
      781 gttgatcttt taaaaactct tacaagtatg aatgaatttg agaaaatatg gggtgctgaa
      841 agggcgcaaa gagaaaaaca attttttaat gaacttggta agccacttac tcaagaagat
      901 atagataggt tcttagctaa taaaaacaat caaaaagaag acaaaaaaac tttcaaacct
      961 atacaggcag aaagtaaaaa caaagaaact tacaaagatg ataatgtaag aaacgagctt
     1021 gtaaaaaaac tattagaagg taaatttagc acaagcgatg agttagaact tctttttggt
     1081 atgaaattta gcgatgatga tacaggggaa tttaataaaa tcctttcttt aaattctgca
     1141 ccaaaaagta tagatataaa agcttaaaac attaaaaact ttgatttaaa atacaatcaa
     1201 ataaaaagat ttttataact ttgggcttct ttagccttta aaactctttg tttatccaag
     1261 tagaaaagct cttcggcatt gtctttgagt ttttgcaagg aatttatatc cttaaatttt
     1321 ctaactctaa atcctattat ttttcca
//
LOCUS       DARAII010000234         1344 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.247, whole genome shotgun sequence.
ACCESSION   DARAII010000234 DARAII010000000
VERSION     DARAII010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1344
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.247"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            1..973
                     /locus_tag="SB143_002126"
                     /pseudo
     CDS             1..973
                     /locus_tag="SB143_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(997..>1344)
                     /locus_tag="SB143_002127"
     CDS             complement(997..>1344)
                     /locus_tag="SB143_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEF9750609.1"
                     /translation="AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFIL
                     KTYQNMKEELEAEKRALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEE
                     GIKSLENLAKDED"
BASE COUNT          452 a          230 c          244 g          418 t
ORIGIN      
        1 acaaagtagg agaagaatta agtgacaagg aaggagtaaa gtattttaag gaactttcta
       61 aaagacctgt gcaagaatgg ccaaataaaa tttaagcatc aatgatgttc caaaaggtaa
      121 gcaaggggat ttaatccgtt atggcataga gcttttaagc aagacagaaa gtactctagg
      181 accctatagc aagctaaaaa agacaagcaa cgaagtaaac tgtatttcct gtcacatgga
      241 caatgacggc aatggtttac cagggacaaa aaaatatgtt attccatttt taaatgtcct
      301 aaacaattat ccaagacttg atatagaaac gatgaaaatc atctctgttg aagatagaat
      361 tcgcggaatg ggtggaactg actctcatag atttcctaat gattctaaag aaatgaaagc
      421 aattttagct tattttaaat ggctaaaaga agcttatggc atcaaagacg gcgtaaagct
      481 tgaaggagat tttttcgcta agatgaattt tccaaatcgc ccagctgacc ctgtgcgtgg
      541 gaaaaaactc tttgaagaaa attgcgttgc ttgccatggc gaaagaggac ttggggtaaa
      601 aaatgataat tacgaacaag gtagcggaca tttatatcca tctttactta tctatcctga
      661 tggtggacac atggctatga taccattttt agcaagattt ttaaaatcag ccatgccttt
      721 tggtgcgagt gcggataatc ctatattagg cgatgaagat gcactagata tagcagctta
      781 tgtcaataca ggttttgtaa gaatgcctat aaccactaca gaaaatcgtg caggacttga
      841 tacagcttat agcaaatccc catcattaaa acctgagtat tttgcctcac cgcaacaaaa
      901 tttagaccct aaagaataca taaaagtaaa atacggacct tggaaaaatc caaatcactt
      961 cccaggagaa tgattaattt tgggcttagc ccaaaattaa tcctcatctt tggctaaatt
     1021 ttcaagactt ttaatccctt cttcgcctat caaatttcca ccttgtaagt cgctaaatat
     1081 cgcatttaaa gaactcacta tggcagtgga attaaaactt agattttcta tagctctttc
     1141 tctttttttc catatatttt gcaaagccct tttttcagct tctaactctt ctttcatatt
     1201 ttggtaagtt ttgagtataa aagtgatttg cgtgttaaat tccttagaat ttaagtattc
     1261 gtataaaatg tgattttttt catctttgtt ttgcagggca tttttgagtt tataagcgtt
     1321 tataatgctt tctctaagca ctgc
//
LOCUS       DARAII010000235         1329 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.248, whole genome shotgun sequence.
ACCESSION   DARAII010000235 DARAII010000000
VERSION     DARAII010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.248"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            17..499
                     /gene="folK"
                     /locus_tag="SB143_002128"
     CDS             17..499
                     /gene="folK"
                     /locus_tag="SB143_002128"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEF9750610.1"
                     /translation="MLKIKGARRLETSRFFPYFSQNKKEFKYLALVGLGSNIEPEKKR
                     FNKLFRVMMEDRRFKILATSPFLINEAFGFKAQKDFTNAAMLIQTNLHARAFLKVLLF
                     YELKFKRKRTFKNAPRTLDLDLLYFSQKVKRDEGCMVPHIGANQRISVILPLGLTKGL
                     "
     gene            500..>1329
                     /locus_tag="SB143_002129"
     CDS             500..>1329
                     /locus_tag="SB143_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEF9750611.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRA
                     ALYEVMVAIEESDYEEHLKKMGKSLPPKKTVAKTLEKQNLEEKVNASIPQNNEDEDVI
                     LDFSNTRANLAKTKTSDTNYQDFPQSKINPNPTMGFNDFKERLSEVSNEISKVTNTPL
                     VDNYAPNPNYNKKIENFEKQINKLNDKIDLLADMMWDEKAEARNNLIIPPEFATIYKK
                     AKESGMLEKHLEAIMKATIENMPAAMKTNKDAVQRYFYSLLRNILPCRVESEIKKQKI
                     "
BASE COUNT          533 a          216 c          218 g          362 t
ORIGIN      
        1 gggctcaaaa ttaaaaatgc taaaaataaa aggagcaaga cgacttgaaa caagccgttt
       61 ttttccttat tttagccaaa acaaaaaaga atttaaatac cttgctctag taggtctagg
      121 aagcaatata gagccagaaa aaaaaaggtt taacaagctt tttcgtgtaa tgatggagga
      181 tagaaggttt aaaattttag ccacatctcc atttttgatc aatgaagctt ttggttttaa
      241 agctcaaaaa gattttacga atgcagcaat gcttatacaa acaaacctac acgcaagagc
      301 ttttttgaaa gttttacttt tttatgagct taaatttaaa agaaaaagaa ctttcaaaaa
      361 cgctcctaga acacttgatt tagatctttt atatttttca caaaaagtca agcgtgatga
      421 ggggtgtatg gtgcctcata taggggctaa tcaaagaata agtgtaattt tgcccttggg
      481 cttaacaaaa ggattgtaaa tgggacaact tatccatacc tttactgtag aagatacaga
      541 gcaaattatc ccgaaagtaa aagaggatta tggcgacaaa gctttaatta ttaccaataa
      601 acaaattcgt cccaaaacac ttaaccgcgc tgctctttat gaagtaatgg ttgctataga
      661 agagagtgat tatgaagagc atttgaaaaa aatgggaaaa tccttgcctc ctaaaaaaac
      721 tgtcgctaaa actttagaaa aacaaaatct tgaagaaaaa gtcaatgctt caataccaca
      781 aaataacgaa gatgaagatg tgattcttga tttttcaaat actagggcaa atttagcaaa
      841 aaccaaaact agcgacacta attaccaaga ctttccacaa agtaaaatca atcctaatcc
      901 caccatgggt tttaacgatt ttaaagaacg cttaagtgaa gtaagcaatg aaatttcaaa
      961 agtaaccaat acccctttgg tagataatta tgcacccaat ccaaactata ataaaaaaat
     1021 agagaatttt gaaaaacaaa tcaataagct taatgataaa atcgatttac tcgcagacat
     1081 gatgtgggat gaaaaagcag aagctcgcaa caatcttatc attcctcctg aatttgcaac
     1141 catttataaa aaagccaaag aaagcggtat gcttgaaaag catttagaag ctatcatgaa
     1201 agccactata gaaaatatgc ctgcggccat gaaaacaaac aaagacgctg tgcaacgata
     1261 tttttattct cttttgagaa atattttacc ttgcagggta gaaagtgaaa tcaaaaaaca
     1321 aaaaattat
//
LOCUS       DARAII010000236         1289 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.250, whole genome shotgun sequence.
ACCESSION   DARAII010000236 DARAII010000000
VERSION     DARAII010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1289
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.250"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            62..>1289
                     /locus_tag="SB143_002130"
     CDS             62..>1289
                     /locus_tag="SB143_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEF9750612.1"
                     /translation="MMSNLAPQNDVLNLTPNKTSTTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLKSIDETNEFLPDHMKIGQKEVVNEVMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLQNTT
                     HTTSTHSTQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDVTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKDNNLKDLIKDSTKQDKNSNKELKDNAST
                     QELTNLKDLNKENKDLNKDFNKELNKNQGDMQGQNKNLKNNNQDLNLDKNLNKEIVKD
                     TQNLVSNLTQKDFNLNK"
BASE COUNT          577 a          154 c          176 g          382 t
ORIGIN      
        1 gaaagaaaaa tttcctaatg taatggtaga taaattttta aaataatttt ttgaaggaaa
       61 agtgatgtca aatttagctc cgcaaaatga tgttttaaat cttacgccga ataaaacttc
      121 tactactagc agttctttta gtaaaacgag taaaaataaa gaacatgaaa gtagtgatag
      181 taaaaattca acccaagatg atacagaaag ttttttaaat tctttgctta aatctattga
      241 tgaaaccaat gaatttttac ctgatcatat gaagattggt caaaaagaag ttgttaatga
      301 agtgatgagc agacttcaaa aaggagcttt tgatgagagt gataagataa gtattttcga
      361 atctgcttct tttatgcaaa ttctttcttt attggataag ctaaaaacag atacagcaga
      421 tgttaaactg gcaaatcttt ctactcaact ttcaagtctt atcaaaacag aagctaattt
      481 taatgcttta aaaggcgcat caaatcttag cgagcttttg gacatagcta aagatttggg
      541 cttaaatgta aaaaatatta aagtagatcg tcttcttgat cttaaagcaa cttttccaaa
      601 tttagataag gctgattttt ttaaaggtgc tgtggataat gtttttaaag aaatcatcaa
      661 taataaaatt tctaatgtga gtaaaaattt aaatcacaat ttacaaaata caactcatac
      721 tacaagcact cattctacgc aaaaaacaaa ttctaaagat agcggttctt tgctttctca
      781 aactttaaaa aatttagatt ccatactttc atccaaagaa agcaaacacg aaaaaaacga
      841 taaagttaaa tcaaaaatag aagaagatgt cacagatgct aaaaatactt taaaaaatat
      901 caaaaatgat gagtttgcaa aaaatttaac agaagagtta aatataaaag ataaaaaaaa
      961 ccaagataat ttaaataaag ataacaatct taaagatttg attaaagata gtacaaaaca
     1021 agataaaaat tcaaacaaag agctaaaaga caatgcaagt actcaggagc ttacaaatct
     1081 taaagattta aataaagaaa acaaagactt aaacaaagat tttaataaag agttaaataa
     1141 aaatcaaggg gatatgcaag gacaaaataa aaatttaaag aataataatc aagatttaaa
     1201 tcttgataaa aatttaaata aagaaattgt caaagatact cagaatttag tttcaaattt
     1261 aacacaaaaa gattttaatc taaataaag
//
LOCUS       DARAII010000237         1247 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.252, whole genome shotgun sequence.
ACCESSION   DARAII010000237 DARAII010000000
VERSION     DARAII010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1247)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1247)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1247
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.252"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..1217
                     /gene="zwf"
                     /locus_tag="SB143_002131"
     CDS             <1..1217
                     /gene="zwf"
                     /locus_tag="SB143_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002813896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEF9750613.1"
                     /translation="HIKNYDDKKWEEFTHIITYLSINLNEVRDFDCLREEMGNESQNI
                     VIYFSVAPEFFMKACKNLALVHLNQSNVKIILEKPLGMDLQSCQAINNEIAKYYAENQ
                     IYRIDHYLGKESIQNLLILRSCNPIFTSLWGKEHIDCVEISVFETLGVESRGEFYDST
                     GALRDMVQNHILQILSLVAMKIPQNFDAESIRRSKLELLKSLKPLSDEDIKNNVIRAQ
                     YIKSGEFKAYLAEDNVKSDSQTETFVAIKAELLEENWKGVPFYIRTGKRMADSFAQIV
                     VSFKNKELSNLNPNKLIIRLQPDNHISLNLRVKKIGKTIEYEEKNLILNLNNASIMQP
                     YERLILDAIEGNQASFNHKEELEAAWTWVDSILENWKANKTPLYSYLAGSWGPREVFE
                     LVKKEGHEWHNF"
BASE COUNT          439 a          150 c          237 g          421 t
ORIGIN      
        1 tacatattaa aaattatgat gataagaagt gggaagaatt tacacatatt ataacttatt
       61 taagtattaa tttaaatgaa gtgagggatt ttgattgttt gcgagaagaa atgggcaatg
      121 agagtcaaaa tattgttatt tatttttctg ttgcacctga attttttatg aaagcgtgta
      181 aaaatttagc actcgtgcat cttaaccaat ccaatgtgaa aattatccta gaaaagcctt
      241 tgggtatgga tttacaatct tgtcaggcta ttaacaatga aattgctaaa tattacgctg
      301 agaatcaaat ttatagaatt gatcattatc ttggaaagga aagcatacaa aatcttttaa
      361 ttttaagatc ttgcaatcct atttttacct ccttgtgggg caaagagcat attgattgtg
      421 tagaaattag tgtttttgag accttgggag ttgaaagcag aggggaattt tatgatagta
      481 ctggagcttt aagagatatg gtgcaaaatc atattttaca aattctttct ttggttgcta
      541 tgaaaattcc gcaaaatttt gacgcagagt ctataagacg ttccaaactt gaacttttaa
      601 aaagtttaaa acctttgagt gatgaagata ttaaaaataa tgtgattagg gctcaatata
      661 tcaaatcagg tgaatttaaa gcatatttag ctgaagataa cgttaaaagc gatagtcaaa
      721 ctgaaacttt tgttgctatc aaagcggagc ttttggaaga aaactggaaa ggagttcctt
      781 tttatataag aacaggcaag agaatggctg attctttcgc tcaaattgtt gtgtctttta
      841 aaaataaaga gctttcaaat ttaaatccta ataagcttat catacgctta caaccggata
      901 atcacatttc tttaaattta agagtgaaga agataggaaa aaccatagaa tacgaagaaa
      961 aaaatcttat tttaaattta aataatgctt ctattatgca gccttacgag agattgattt
     1021 tagatgcaat agaaggcaat caggcgtctt ttaatcacaa agaagagctt gaggcagctt
     1081 ggacttgggt tgattctatt ttggaaaact ggaaagccaa taaaacacct ttatattctt
     1141 atcttgcagg tagttggggt cctagggaag tctttgagct tgtaaaaaaa gaagggcatg
     1201 aatggcataa tttttgatat gaatttttat agttgtgttt atttttt
//
LOCUS       DARAII010000238         1244 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.253, whole genome shotgun sequence.
ACCESSION   DARAII010000238 DARAII010000000
VERSION     DARAII010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1244
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.253"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            60..296
                     /locus_tag="SB143_002132"
     CDS             60..296
                     /locus_tag="SB143_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750614.1"
                     /translation="MQKQYPEVHSLEESLAILKKYKDDLTKEQYEQNKSIICGFAIEN
                     MFANEEDIINLIKVDKQEKTPDEIIAEYKKEWGV"
     gene            304..>1244
                     /locus_tag="SB143_002133"
     CDS             304..>1244
                     /locus_tag="SB143_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="HEF9750615.1"
                     /translation="MSKVATAHCNPKKQPALNHNDRTNDNAKTITKELTHLNEYSCTS
                     DEVRKNIERLYKKAYENFYKYCENKNGLAKSGKPKGLQNFTKKEKCYHEFIYEIGENT
                     TMEQCQELTQKIAELTGFTPLQVVIHRDEVSENAKGEKQTHYHAHAVFFTLDNNGLQL
                     ARREASLNKANLSKIQTLTAQSLKMERGANRYENNEKQPQYIQDYKTYAQFKEQEKAL
                     LQRIQEQEHKLTQMALELKKKEKEIQDKAKELKSKENELQAKIEQHEKHIQNLELGHE
                     RALKELTQEFENRLSLWKNILTFGKHNAKVREDYQLT"
BASE COUNT          561 a          196 c          206 g          281 t
ORIGIN      
        1 taaatgattt tttgattttt attaagcttt taaaacacca aaaaaggaaa aatttaaaaa
       61 tgcaaaaaca atatcccgaa gtgcatagct tagaagaaag ccttgcgata cttaaaaaat
      121 ataaagatga tttgactaaa gagcaatatg agcaaaataa atctattatt tgtggatttg
      181 ctattgagaa tatgtttgca aatgaagaag acattataaa tctcataaaa gtagataaac
      241 aagaaaaaac acctgatgaa ataatcgccg aatataaaaa agagtgggga gtatgaatgc
      301 aaaatgtcaa aagttgccac cgctcattgc aatcctaaaa aacaacctgc attaaaccac
      361 aatgatagaa ccaacgataa tgctaagaca atcactaaag aacttacgca tttaaatgaa
      421 tactcttgca ctagtgatga agtgcgtaag aacatagaaa ggctttataa aaaagcttat
      481 gaaaattttt ataaatattg tgaaaataag aatggtttag ctaaaagtgg aaagcctaaa
      541 ggacttcaaa attttactaa aaaagaaaaa tgctatcacg agtttatata cgaaatcggc
      601 gaaaatacta caatggagca atgccaagag cttacgcaaa aaatcgcaga gcttacagga
      661 tttacacctt tgcaagtcgt aatccataga gatgaagtaa gtgagaatgc taaaggggaa
      721 aaacaaaccc attatcacgc ccacgcggta ttttttacac ttgataataa tggcttacaa
      781 cttgccaggc gtgaagcaag tttgaataaa gccaatctta gcaaaattca aaccctaacc
      841 gcacaaagtt taaaaatgga gcgtggagct aatcgctacg agaataacga aaagcaaccc
      901 caatacatac aagattataa aacttacgct caatttaaag aacaagaaaa agcattactt
      961 caaagaatac aagaacaaga gcataaatta acgcaaatgg ccctagaatt gaaaaaaaaa
     1021 gaaaaagaga tacaagacaa ggctaaagag ctaaaatcga aagaaaacga attacaagcg
     1081 aaaatagagc aacacgaaaa acatatacag aatttagaac taggacacga aagagcttta
     1141 aaagaactta cacaagaatt tgaaaatcgc ttaagcctat ggaaaaacat tctaaccttt
     1201 ggaaaacaca acgccaaagt aagagaagac tatcagttaa caaa
//
LOCUS       DARAII010000239         1230 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.254, whole genome shotgun sequence.
ACCESSION   DARAII010000239 DARAII010000000
VERSION     DARAII010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.254"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            52..324
                     /locus_tag="SB143_002134"
     CDS             52..324
                     /locus_tag="SB143_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750616.1"
                     /translation="MQKQYPEVHSLEESLAILKKYKDDVSKKDYEEIKSTICGHAIED
                     IFANEEDIIMLVKMSAYNLSSDEIIAEYKEKGFVEYVKSCHRSLQS"
     gene            290..>1230
                     /locus_tag="SB143_002135"
     CDS             290..>1230
                     /locus_tag="SB143_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="HEF9750617.1"
                     /translation="MSKVATAHCNPKKQPALNHNDRTNDNAKTITKELTHLNEYSCTS
                     DEVRKNIERLYKKAYENFYKYCENKNGLAKSGKPKGLQNFTKKEKCYHEFIYEIGENT
                     TMEQCQELTQKIAELTGFTPLQVVIHRDEVSENAKGEKQTHYHAHAVFFTLDNNGLQL
                     ARREASLNKANLSKIQTLTAQSLKMERGANRYENNEKQPQYIQDYKTYAQFKEQEKAL
                     LQRIQEQEHKLTQMALELKKKEKEIQDKAKELKSKENELQAKIEQHQKHIQNLELGHE
                     RALKELTQEFENRLSLWKNILTFGKHNAKVREDYQLT"
BASE COUNT          553 a          195 c          207 g          275 t
ORIGIN      
        1 tgaatgattt tttgattttt attaaaacac caaaaaagga aaaatttaaa aatgcaaaaa
       61 caatatcccg aagtgcatag cttagaagaa agccttgcga tacttaaaaa atataaagat
      121 gatgtaagca aaaaagacta tgaagaaatt aaatctacca tttgcggaca cgctatcgaa
      181 gatatatttg caaatgaaga agatattatt atgctagtaa aaatgagtgc atataatcta
      241 agtagtgatg agataatagc agaatacaaa gaaaagggat ttgtagaata tgtcaaaagt
      301 tgccaccgct cattgcaatc ctaaaaaaca acctgcatta aaccacaatg atagaaccaa
      361 cgataatgct aagacaatca ctaaagaact tacgcattta aatgaatact cttgcactag
      421 cgatgaagtg cgtaagaaca tagaaaggct ttataaaaaa gcttatgaaa atttttataa
      481 atattgtgaa aataagaatg gtttagctaa aagtggaaag cctaaaggac ttcaaaattt
      541 tactaaaaaa gaaaaatgct atcacgagtt tatatacgaa atcggcgaaa atactacaat
      601 ggagcaatgc caagagctta cgcaaaaaat cgcagagctt acaggattta cacctttgca
      661 agttgtaatc catagagatg aagtaagcga gaatgctaaa ggggaaaaac aaacccatta
      721 tcacgcccac gcagtatttt ttacactcga taacaatggc ttacaacttg ctagacgtga
      781 agcaagtttg aataaagcca atcttagcaa aatacaaacc ctaaccgcac aaagtttaaa
      841 aatggagcgt ggagctaatc gctatgagaa taacgaaaag caaccccaat acatacaaga
      901 ttataaaaca tacgctcagt ttaaagaaca agaaaaagca ttgcttcaaa gaatacaaga
      961 acaagagcat aaattaacgc aaatggccct agaattgaaa aaaaaagaaa aagagataca
     1021 agacaaggct aaagagttaa aatcgaaaga aaacgaatta caagcgaaaa tagagcaaca
     1081 tcaaaaacat atacagaatt tagaactagg acacgaaaga gctttaaaag aacttacgca
     1141 agaatttgaa aatcgcttaa gcctatggaa aaacattcta acctttggaa aacacaacgc
     1201 caaagtaaga gaagactatc agctaactaa
//
LOCUS       DARAII010000240         1217 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.255, whole genome shotgun sequence.
ACCESSION   DARAII010000240 DARAII010000000
VERSION     DARAII010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.255"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>1217
                     /locus_tag="SB143_002136"
     CDS             <1..>1217
                     /locus_tag="SB143_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HEF9750618.1"
                     /translation="KALNNFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSII
                     ILSDKGVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYG
                     ATVINPYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNG
                     SALFECLGLSSKVIDKYFTSTISRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIH
                     GFRSAKEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAIS
                     IDKVESVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIK
                     DGVNKNSAIKQVASGRFGVDLNYLSHAKELQIKVAQGAKPGEGGQLMGFKVYPWIAKA
                     RHSTAGVTLISPPP"
BASE COUNT          420 a          169 c          248 g          380 t
ORIGIN      
        1 aaagccttaa acaatttcca agttaaagaa ttttctatac tttatgatta ttctaaaaaa
       61 actttagaaa aggctttaga tgaactttgc gttaagatag aagatgaggt taaaaaaggt
      121 gtttctatta tcattttaag cgataaagga gtggatgaaa aaaacgctta tatccctgct
      181 ttgcttgctg tttctggagt gcataatcat ctagtaagaa aaaatttaag aacacataca
      241 agtcttatca tcgaaagtgg tgaacctaga gaaattcatc attttgcatg tcttttaggt
      301 tatggtgcga ctgttattaa tccttatttg gtttatgaga gtatacaaaa actcattgcc
      361 aataaagatt taaatttaag ttatgaaaag gcggtagaaa attttatcaa agcaagttca
      421 agtggtatag tcaaaattgc ttctaaaatg ggagtttcta ctttacaaag ttataatggt
      481 tctgctcttt ttgagtgttt gggcttaagc tctaaggtga ttgataaata ctttacttct
      541 acaatttcac gcattgaagg tatggattta gaagattttg aaaaagaact cattgcttta
      601 cataaacatg cttttaacga tacgcataag gctttagatt ctaaaggaat tcatggtttt
      661 agaagtgcta aagaagaaca cttaatcgat ccacttgtga tttttaatct tcagcaagct
      721 tgtcgcaata aagactataa aagctttaaa aaatactcgg ctttagtaga tgaaaaacaa
      781 gtgaatttgc gttctttgat ggaatttgat tttagtgaag ctatcagtat agataaggtt
      841 gaaagtgtag aaagtatagt taaacgcttt agaacagggg cgatgagtta tggttctatt
      901 tctaaagaag cacacgagtg tttagcacag gctatgaata aaataggtgc taaatcaaat
      961 tcaggcgagg gcggtgaaga tgaggaacgc tatgaaatca aagatggagt caataaaaat
     1021 tccgctatca aacaagtagc aagtgggcgt tttggggtgg atttaaacta cttaagccat
     1081 gcaaaagaat tacaaatcaa agtcgctcaa ggtgcaaaac caggcgaggg cggacaatta
     1141 atgggcttta aagtttatcc ttggatagct aaggctagac attctacagc gggtgtgacg
     1201 cttatttccc cgcctcc
//
LOCUS       DARAII010000241         1185 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.257, whole genome shotgun sequence.
ACCESSION   DARAII010000241 DARAII010000000
VERSION     DARAII010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.257"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(60..464)
                     /locus_tag="SB143_002137"
     CDS             complement(60..464)
                     /locus_tag="SB143_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEF9750619.1"
                     /translation="MQNEDLKFDEWNEVKKHIEKEKNKIVKKQKIYWIKIGKNIGSEI
                     FGKGRVFARPVLVINVFYNGLFLGVPLSSKTKNKSGKLYYKFTDEKGNSQVALLGQMK
                     IFDNKRKITFESNVKNEDFILIKEKIKKNIID"
     gene            complement(697..1059)
                     /locus_tag="SB143_002138"
     CDS             complement(697..1059)
                     /locus_tag="SB143_002138"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750620.1"
                     /translation="MEKVYITENGSKIKLRAENLPSVNNLNKDLFVFLSELEKGVDFR
                     SYEFSNDEDEYIINAFELFSCVFWGMDFNQREKLEILRDENKNIFLKFKDNIKQFEKD
                     KKYKWEKVLKELKKCSKK"
BASE COUNT          383 a          184 c           79 g          539 t
ORIGIN      
        1 ttagcgtaga attggcttat cttttagata ggttgccccg tcatagagcg gggataatct
       61 taatctataa tattcttttt tattttttct tttattaaaa taaaatcttc atttttaaca
      121 ttgctttcaa atgttatttt tctcttatta tcaaaaattt tcatttgccc caaaagtgca
      181 acttgcgaat ttcctttttc atctgtgaat ttataatata gcttaccact tttatttttt
      241 gtttttgaac ttaaaggaac tcctaaaaac aaaccattat aaaatacatt aattactaaa
      301 acagggcgtg caaaaaccct tcctttgcca aaaatctcac tccctatatt tttaccaatt
      361 ttaatccaat atattttttg ttttttaaca attttatttt tttctttttc aatatgtttt
      421 ttaacttcat tccattcatc aaatttcaaa tcttcatttt gcattattat tcacttgtcc
      481 ttattttatt tttatattta taacaaattt tactttaaaa aaatcatttt taaggtttat
      541 caaaccttaa gcttttaaaa ccctattttt ccataacttt aagttttaat tcttttttga
      601 gaaaacttaa aaagaataga aaaaatcttt aaaaatacta taaaataggc tttcaagcta
      661 ttttttaaaa aacttgaaaa ttaaactttt caaactttat tttttagaac atttttttaa
      721 ttcttttaat actttttccc atttgtattt tttatctttt tcaaactgtt ttatattgtc
      781 tttaaatttt aaaaatatat ttttattttc atctcttaaa atctctaatt tttctctttg
      841 attaaaatcc ataccccaaa acacgcaaga aaacaattca aaagcattaa taatatactc
      901 atcttcatca tttgaaaatt cataacttct aaaatccacg cctttttcta gttcagataa
      961 aaaaacaaac aaatctttat taagattatt tacagaaggt aagttttctg ctcttaactt
     1021 aattttactt ccattttctg taatataaac tttttccatc tttttgcctt tgtcttttgt
     1081 ttttgttatt ataattatac cttttttata cttagtatat acttaatcta tacatttttt
     1141 atatgttatt tatatgtttt tttaaatcca ttttgcacca aaccc
//
LOCUS       DARAII010000242         1142 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.260, whole genome shotgun sequence.
ACCESSION   DARAII010000242 DARAII010000000
VERSION     DARAII010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.260"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>1142)
                     /locus_tag="SB143_002139"
     CDS             complement(<1..>1142)
                     /locus_tag="SB143_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEF9750621.1"
                     /translation="TIGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQK
                     VVISTSVGTGLGALAEEINKSADQTGVRATFTVETRGMAAVRAGTTSDTFSINGVTIG
                     QVAYEDGDANGALVSAINSVKDTTGVEASIDANGQLLLTSREGRGIKIEGSIGGGAFI
                     NKDMMENYGRLSLVKNDGKDILISGTGLSSAGFGANNFISQASVSLRESKGRFDANIA
                     DAMGFGSVNKGLVLAASSVSAYMSAAGSGFSAGSGYSVGSGKGYSTVLTTTNPITISA
                     ASQLSAVYNVSAGSGFSSGSNLSQFATMKTTAFGVKDETAGVTTLKGAMAVMDIAETA
                     TTNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAA"
BASE COUNT          354 a          257 c          184 g          347 t
ORIGIN      
        1 tcagctgcaa agtctacatc tcttatggtt gattcagctg ctttaacatt gacttgagta
       61 acagtgatgt tgtttatagt aacttgaagt tgattttgca ccgaaccaat gtcggctctg
      121 atttgatcaa gatttgttgt ggctgtttca gctatatcca tcaccgccat agcaccctta
      181 agtgtggtaa cacctgcggt ttcatctttt actccaaaag cagttgtttt catagttgca
      241 aactgagaaa gatttgatcc tgatgaaaaa cctgaacctg cagaaacatt atataccgca
      301 gaaagttgcg aagcagctga aatagttatt ggattagtag tagtaagcac agtagaataa
      361 cccttaccac tacctacaga ataacctgaa cctgccgaaa atccacttcc tgcagcactc
      421 atataagcgc taacagaaga agcagctaaa accaatcctt tgttaacaga accaaatccc
      481 atagcatcag cgatattagc atcaaatctt ccttttgact ctcttaaaga aacagaagcc
      541 tgagagataa aattattcgc tccaaagcct gcagaagaaa ggcctgttcc actgattaaa
      601 atatccttac catcattttt aactaaagac aagcgaccat aattttccat catatcttta
      661 ttgataaaag ctccaccacc gatgcttcct tcgattttaa ttcctctacc ttctcttgaa
      721 gtaagtaaaa gttgtccatt agcatcgatc gaagcttcaa ctcctgtagt atctttaact
      781 gaattgattg cagaaactaa agctccatta gcatcaccat cttcataggc tacttgacct
      841 atagttaccc cattgataga aaaagtatct gaagtagttc cagccctaac tgcagccata
      901 cctctagttt ctactgtaaa agtagctcta acaccggttt gatcagcact cttattgatc
      961 tcttcagcta aggctccaag tcctgttcca actgaagttg aaatcacaac tttttgaaac
     1021 tgaaaatcat ctataccgtt gtagttttta agagtaaatt gcacttcgcc actagatgaa
     1081 attcttcctc ctgtttcaaa gcgtgttaaa cctatcttag aagattgagt tgctcctatg
     1141 gt
//
LOCUS       DARAII010000243         1129 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.261, whole genome shotgun sequence.
ACCESSION   DARAII010000243 DARAII010000000
VERSION     DARAII010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.261"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..591
                     /locus_tag="SB143_002140"
     CDS             <1..591
                     /locus_tag="SB143_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEF9750622.1"
                     /translation="LYIKSHFSDSIDVKNKILNDDNMINLIKEVSLKVISAYKNGHKT
                     LLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYENLFARQ
                     VQAQGVSGDVFIGISTSGNSKNILKALEVCKEKGILSIGLTGVSGGAMNELCDYCIKV
                     PSSCTPRIQEAHILIGHIICAIVEEELFGKGFDCKL"
     gene            579..>1129
                     /locus_tag="SB143_002141"
     CDS             579..>1129
                     /locus_tag="SB143_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEF9750623.1"
                     /translation="MQAIVLAGGLGTRLRSVVQDLPKPMAPINGKPFLAFVLEHLKKQ
                     GITEIILSVSYKYELIQEYFKDEFHGMKIHYNIEKELLGTGGAIKDALKLVKNEVYVV
                     NGDTFFDIDLKKLVLNGSKICIALKQMQNFDRYGTVNVDEQGIVTSFEEKVFKKQGLI
                     NGGIYLLKKDIFDEFSLEKKFSF"
BASE COUNT          393 a          127 c          243 g          366 t
ORIGIN      
        1 ctatatataa aatctcattt tagtgattcg attgatgtta aaaataaaat attaaatgat
       61 gataatatga tcaatttgat caaagaagta tctttaaaag ttatcagcgc ttacaaaaat
      121 ggccataaaa ccttactagc aggcaatgga ggaagcgcag ctgatgcaca gcacatagca
      181 ggggagtttg taagtagatt ttactttgat aggccaggta ttgcaagtat agctttaaca
      241 acggatacta gtatattaac agctattggc aatgattatg gctatgaaaa tttatttgct
      301 agacaggtgc aagctcaagg tgtgagtggg gatgttttta taggaatttc tacaagtgga
      361 aatagtaaaa acatcttaaa agctttggag gtttgtaaag aaaaaggaat tttaagcata
      421 ggtttaaccg gagttagtgg cggagctatg aatgaacttt gtgattattg tatcaaagtg
      481 ccatcatctt gtacgccaag aattcaagaa gcacatattt tgatagggca tattatctgt
      541 gctatagtag aagaagagct ttttggcaag gggtttgatt gcaagctata gttttggctg
      601 gaggtcttgg tactaggctt agaagtgtag tgcaagatct tccaaagcct atggctccga
      661 tcaatgggaa acccttttta gcttttgttt tagagcattt gaaaaagcaa ggaattactg
      721 agattattct aagtgtttcg tataaatatg aactgattca agagtatttt aaagatgaat
      781 ttcatggtat gaaaatacac tataacatcg aaaaagagct tttgggtaca ggtggagcta
      841 taaaagatgc tttaaaattg gtaaaaaatg aagtctatgt tgtaaatgga gatactttct
      901 ttgacattga tttaaaaaag cttgttttaa atggtagtaa aatttgcata gccttaaaac
      961 aaatgcaaaa ttttgataga tatggcactg taaatgttga tgagcaaggt attgtgacat
     1021 cttttgaaga aaaggtgttt aaaaagcagg gtttaatcaa tggtggtata tacttactca
     1081 aaaaagatat ttttgatgaa tttagtttag agaagaaatt ttcttttga
//
LOCUS       DARAII010000244         1118 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.262, whole genome shotgun sequence.
ACCESSION   DARAII010000244 DARAII010000000
VERSION     DARAII010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1118
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.262"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>1118
                     /gene="topA"
                     /locus_tag="SB143_002142"
     CDS             <1..>1118
                     /gene="topA"
                     /locus_tag="SB143_002142"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEF9750624.1"
                     /translation="FGIKIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDED
                     REGEAIAYHIAKAIGKDENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLL
                     DRIVGYKLSPLLGQKIQRGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKD
                     LNAELVEFDKAKIEKLTLTNKDRAKLVFEACKNENYAISDIESKERKIAPPPPFMTST
                     LQQSASNRLGFNPKKTMMIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKF
                     IQANFGKDYLPSKANVYTTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLI
                     YNRFLACQMSPAISQTQNVFVKNDRAVFKISGRKILFDG"
BASE COUNT          429 a          178 c          204 g          307 t
ORIGIN      
        1 tttgggatta aaatagaaga tgatgaattt atccctgagt atagaatcac aagtgatcat
       61 agcgccttag ttaaagaact taaaagcaaa gccaaagatg ccaaagaagt ctatcttgca
      121 acggatgaag atagagaagg agaggctata gcctatcata ttgcaaaagc tataggaaaa
      181 gatgaaaaca ccttaccacg cattgttttt catgaaatca ctaaaagcgc tatagaaaat
      241 gctttaaaaa atccaagaaa attaaacatg cactctgtaa atgctcagca aaccagacgt
      301 cttttagatc gcattgtagg gtataagctc agccctttat taggacaaaa aattcaaaga
      361 ggacttagtg ctgggcgtgt tcaaagtgcg gctttaaaga tcatagtcga tcgtgagaaa
      421 gaaattcgtg cttttgttcc tttagaatat tttagtatag atatgatatt tcaaaaggat
      481 ttaaatgcag aacttgtcga atttgataaa gcaaagatag aaaagcttac tcttacaaat
      541 aaagatcgtg caaagcttgt ttttgaagcg tgtaaaaatg aaaattatgc tataagcgat
      601 atagaaagca aagaaagaaa aattgctcca cctccacctt ttatgacttc aaccttacaa
      661 caaagcgcaa gcaatcgttt gggatttaac cctaaaaaaa ctatgatgat agctcaaaaa
      721 ctttatgagg gagtaaatac ccatgaaggc gtgatggggg ttattactta tatgagaacc
      781 gatagtttaa atttagccaa agaagcagta gaaaatgcaa gaaaattcat acaagcaaat
      841 tttggcaaag actatcttcc aagcaaagca aatgtatata ctacaaagac taaaggcgct
      901 caagaagctc atgaagctat acgccctaca aatttaagtt ttactccaga aattgcggct
      961 aaatttttag acaaagatga gttaaaactt tacacactta tttacaatcg ctttttagcc
     1021 tgtcagatga gtcctgctat ctctcaaact caaaatgtat ttgtaaaaaa tgatagagca
     1081 gtttttaaaa taagcggtag aaaaatcctt tttgatgg
//
LOCUS       DARAII010000245         1114 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.263, whole genome shotgun sequence.
ACCESSION   DARAII010000245 DARAII010000000
VERSION     DARAII010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.263"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..807
                     /locus_tag="SB143_002143"
     CDS             <1..807
                     /locus_tag="SB143_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEF9750625.1"
                     /translation="VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFD
                     FSYEMEISTKPEKAIGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKIT
                     DALKRKWQCGTIQVDFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHC
                     AGEFPFFIAPTAVGIVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEK
                     QKLPMILVLGDDEVAKRSVALRDRRAKEQKNLSLEEFINLVKEKMSEVHF"
     gene            804..>1114
                     /gene="infC"
                     /locus_tag="SB143_002144"
     CDS             804..>1114
                     /gene="infC"
                     /locus_tag="SB143_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEF9750626.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMNYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     Y"
BASE COUNT          421 a          131 c          239 g          323 t
ORIGIN      
        1 gttttgcatg gactttttag agtgagagaa ttcactcaag atgatgcaca tattttttgt
       61 atgccaagtc agattaaaga gcaggtttta gaaattttag cttttgtgga taatttgatg
      121 aaattatttg attttagcta tgaaatggaa atttcaacta aacctgaaaa agccataggt
      181 gatgatgaaa tttgggaaat agcgactaag gctttaaaag aagctttaga tgaacaaggt
      241 ttaaaatacg gtattgatga aggtggcggg gctttttatg ggccaaagat tgatattaaa
      301 atcaccgatg ctttaaaaag aaagtggcaa tgtggaacca tacaagtaga ttttaacctg
      361 ccaagtcgtt ttaaacttga atacactgat agtgataatg aaaaaaaaca acctgtaatg
      421 ttgcatcgtg cgattttagg ttcttttgaa agatttatag gaattttaac cgagcattgt
      481 gcaggtgagt ttccattttt tatcgcacca actgcggtgg gtatagtgcc aataggcgaa
      541 gcacatattg cttacgcaaa agaaattcaa aaagaattat tagagcttaa tatcgatagc
      601 gaggtgtatg aaaaaaatga gagcttaagt aaaaaaattc gtatcgctga aaagcaaaaa
      661 ttacctatga ttttagtttt aggcgatgat gaggtggcaa agcgtagcgt tgctttaaga
      721 gatagaagag ctaaagaaca aaaaaatctt agcttggaag aatttatcaa cttagttaag
      781 gagaaaatga gtgaggtaca cttttgagta aagaaaaaga agtattgctc aatgaagaaa
      841 taagagcgga tgaaatcaga tgtgttggcg atgatggcaa agtttatggt attatcagta
      901 gtgatgaagc tttagaaatt gcaaatcgtt taggacttga tcttgtaatg atagctgcag
      961 atgctaagcc acctgtttgc aagatcatga actatggtaa attccgttat caacaagaga
     1021 aaaaacaaaa agaagcaaag aaaaaacaaa aagtgattga tataaaagaa atcaaacttt
     1081 ctgtaaaaat tgctcaaaat gatattaatt acaa
//
LOCUS       DARAII010000246         1113 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.264, whole genome shotgun sequence.
ACCESSION   DARAII010000246 DARAII010000000
VERSION     DARAII010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.264"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..892
                     /gene="hypE"
                     /locus_tag="SB143_002145"
     CDS             <1..892
                     /gene="hypE"
                     /locus_tag="SB143_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEF9750627.1"
                     /translation="EILNANNDAAILGNLALSTDSFVLSPIFLDEEVNIGKLCVCGSI
                     NDVLMVGAKPKYLSLGLILEEGFELEKLERIVKSIKEECEKCGVMLVCGDTKVVPKGK
                     ADEIYINTTALGEIISKKESKNIKAGLSILLSGDIGRHGASVLIKRNELEADIKSDCK
                     ALDKEVLELLEKDIKVVAMRDATRGGLSAVLNEWAKQSGNDLLIFEEKIIIQDEVLGL
                     CELFGYEAYELANEGTFILCVEKEDELKALEILKKYNVNASIIGEVLEEKKARVILQN
                     AYGAKRFLESPKGELLPRIC"
     gene            892..>1113
                     /locus_tag="SB143_002146"
     CDS             892..>1113
                     /locus_tag="SB143_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEF9750628.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILC"
BASE COUNT          396 a          123 c          245 g          349 t
ORIGIN      
        1 tgaaatttta aacgcaaata atgatgcagc gattttggga aatttggctt taagcacgga
       61 ttcttttgtt ttaagtccga tttttttaga tgaagaggtc aatataggca aactttgtgt
      121 ttgtggttct attaacgatg ttttgatggt gggtgctaag ccaaaatatc taagcttagg
      181 gcttatctta gaagaaggtt ttgagctaga aaaattagaa cgcattgtaa aaagcattaa
      241 agaagaatgt gaaaaatgtg gagttatgtt agtttgtggc gatactaaag ttgttcctaa
      301 gggtaaagca gatgaaattt atatcaacac tacagcctta ggtgaaatta tttctaaaaa
      361 agaaagtaaa aatatcaaag cagggcttag catacttctt tcaggtgata taggaaggca
      421 tggagctagt gttttaatca aaagaaatga gttagaagct gatattaaaa gtgattgcaa
      481 ggctttagat aaagaggttt tagagctttt agaaaaagat ataaaggttg tagctatgag
      541 agatgctact cgcggggggc ttagtgcggt tttaaatgag tgggcaaagc aaagtggaaa
      601 tgatcttttg atctttgaag aaaaaatcat cattcaagat gaggttttag gactttgtga
      661 gctttttggt tatgaagctt atgaacttgc aaatgaaggc acttttatac tttgtgtgga
      721 aaaagaagat gagttaaaag ccttagaaat tctaaaaaaa tacaatgtaa atgcgagtat
      781 tataggagaa gttttagaag agaaaaaagc acgcgtgatc ttacaaaacg cttatggggc
      841 aaaacgcttt ttagaaagcc ctaaaggcga acttttacca agaatttgct aatgcacgaa
      901 ttaagtatag tagaatcttt aatcgaactt tgtgaagaaa atgccttaaa caataaggct
      961 tgcaatgtgc aagaaattta tgtaaaaatt gggcgtttaa gcggtataga agtggatctt
     1021 tttaagcgtt gttttgaaac ttttaaagaa aactcaaata tttgtaaaaa tgctaaactt
     1081 tttatagaac ttgccccact tgaaatttta tgt
//
LOCUS       DARAII010000247         1103 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.265, whole genome shotgun sequence.
ACCESSION   DARAII010000247 DARAII010000000
VERSION     DARAII010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.265"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            4..492
                     /locus_tag="SB143_002147"
     CDS             4..492
                     /locus_tag="SB143_002147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750629.1"
                     /translation="MKEVKGGYAVTTIRISQNELAALAVPDFENELGWEIKNGQIDLE
                     QTMKNDRGLCQMGSTQCYSNSATKKHLWQSQKRLQEFTNALDGSNPLYTALGFSVKRN
                     VGFNRAGKFVYFSYGVVAVNRFDGSIRNVTNSATLNNNVIINELKRNYKDRLESALGG
                     LR"
     gene            489..917
                     /locus_tag="SB143_002148"
     CDS             489..917
                     /locus_tag="SB143_002148"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750630.1"
                     /translation="MTINSLNFSTNTMQYDKEIINFKQKANEKHQAKFMDLSGLPNLG
                     YAKNGETTILGKLWGYDKNISKKEVEDLKKFIEVDHKIGGFDFGGKGLFMLYESEFNS
                     LFNSTMSINEFKEKYLETKKRYEIRHGYQTHNIVSINIRA"
     gene            958..>1103
                     /locus_tag="SB143_002149"
     CDS             958..>1103
                     /locus_tag="SB143_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750631.1"
                     /translation="MKTLSNIIILSALLINFSFANDLLAKLSNGAVSDNSQGVKALSL
                     DEMK"
BASE COUNT          431 a          136 c          205 g          331 t
ORIGIN      
        1 gagatgaaag aggttaaggg tgggtatgcc gtaactacca taagaatttc ccaaaacgaa
       61 ttagctgctt tagcagttcc agattttgaa aatgaattag gttgggaaat aaaaaatggt
      121 caaattgatc ttgaacaaac tatgaaaaat gatagagggt tgtgtcaaat gggctctacg
      181 caatgttatt ctaatagtgc gaccaaaaaa catttatggc aaagtcaaaa aagactacaa
      241 gaatttacca atgctttaga cggctcaaat cctctttata cggctttagg atttagcgta
      301 aaaagaaatg tgggctttaa tagggctgga aaatttgtct atttttctta tggagttgtt
      361 gctgtcaatc gttttgatgg gagcatacgc aatgtaacaa atagtgctac gctaaacaat
      421 aatgtaatta ttaatgaatt aaaaagaaat tataaagatc gcttagaaag tgctttggga
      481 ggattaagat gacaattaat tctttaaact tttcaaccaa cacgatgcaa tatgataaag
      541 aaataatcaa ttttaaacaa aaagcaaatg aaaaacacca agccaaattt atggatctat
      601 caggcttacc aaacttagga tacgccaaaa atggcgaaac aaccatttta gggaaattat
      661 ggggttatga taaaaacata agtaaaaaag aagtcgagga tttaaaaaaa tttatcgaag
      721 tcgatcataa aattggtgga tttgattttg gagggaaagg gctttttatg ttatatgaga
      781 gtgaatttaa ttccctattt aattcaacaa tgagcattaa tgaatttaaa gaaaaatatc
      841 tcgaaactaa aaagagatat gaaattagac acggctatca aactcataac attgtatcga
      901 taaatataag agcttaaaga ttttatagtc aataaattga ttactaagga agtaattatg
      961 aaaacactat caaatattat cattttaagt gctttattaa taaatttcag ctttgcaaat
     1021 gatcttcttg ccaaattaag taatggtgcg gtgagtgata attctcaagg tgttaaagct
     1081 cttagtttag atgagatgaa gca
//
LOCUS       DARAII010000248         1081 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.268, whole genome shotgun sequence.
ACCESSION   DARAII010000248 DARAII010000000
VERSION     DARAII010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.268"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..441
                     /locus_tag="SB143_002150"
     CDS             <1..441
                     /locus_tag="SB143_002150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750632.1"
                     /translation="FPKFLDKKLAKEKLEKTKKYLQKSILESKEFIKKTQTQLQKLRY
                     TLEKNDKNFQTLEKIKNDLLNLFKEFKKLKLFNELCQAIYFHNECEILKFEVLNTNKQ
                     KENLIDFLKIQHNWFIQGLGYLDTQNKTIEKSLENWNFDDIIKK"
     gene            454..>1081
                     /locus_tag="SB143_002151"
     CDS             454..>1081
                     /locus_tag="SB143_002151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750633.1"
                     /translation="MTFTPTQKELFNKNIESLSNILLKESLKEIKSSKFELILGKDNL
                     DINLKDNSGGGYSENLLYQDPIKELQTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQ
                     NKNHQHIVVFEKDIEIIWIMFHILDFSSELQSARLMVLNTNKLEIQDYNELCSSKPFF
                     QFSRIYFLELMSHYYERFHEDILGLNKKLAENFKNSIVSYGNDSTDTLQ"
BASE COUNT          463 a          124 c          126 g          368 t
ORIGIN      
        1 tttccaaaat ttctagataa aaaactagcc aaagaaaaat tagaaaaaac aaaaaaatat
       61 ctccaaaaaa gcattttaga atccaaagaa tttataaaaa aaactcaaac tcagcttcaa
      121 aagcttagat acactttaga aaaaaatgac aagaattttc aaactcttga aaaaatcaaa
      181 aatgatcttt taaatctttt taaagaattt aaaaaactca agctttttaa tgaactttgt
      241 caagctattt attttcataa tgaatgcgaa attttaaaat ttgaagtttt aaacacaaat
      301 aagcaaaaag aaaatttaat agacttttta aaaatacaac acaattggtt tatccaaggc
      361 ctaggatatc ttgatactca aaacaaaacc atagaaaaaa gtttagaaaa ttggaatttt
      421 gacgatataa tcaaaaaata attaggattt ccaatgacct tcacccctac tcaaaaagaa
      481 ctctttaaca aaaacattga gtctttaagt aatattcttt taaaagaaag tttaaaagaa
      541 attaaatcaa gtaaatttga acttatctta ggtaaagata atctagatat aaatttaaaa
      601 gataattcag ggggggggta tagtgaaaat ttactttatc aagatcccat taaagaattg
      661 caaactatgc taaatactta taatgataaa tatctacttt atcctgtatt atatttttat
      721 ggttttggaa atggaatttt atttaaagct ttattgcaaa ataaaaatca tcaacatatt
      781 gttgtttttg aaaaagatat agaaatcatt tggataatgt ttcatatctt agatttttca
      841 agtgaattac aaagtgcaag attgatggtt ttgaatacaa ataaactaga aattcaagat
      901 tataatgaac tttgttcttc taaacctttc tttcaatttt ctagaattta ttttttagaa
      961 ctgatgagtc attattatga aagatttcat gaagatattt taggattgaa taaaaaatta
     1021 gcagaaaatt ttaaaaattc tattgtttct tatggtaatg attcaacaga tactcttcaa
     1081 g
//
LOCUS       DARAII010000249         1080 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.269, whole genome shotgun sequence.
ACCESSION   DARAII010000249 DARAII010000000
VERSION     DARAII010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.269"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..220)
                     /locus_tag="SB143_002152"
     CDS             complement(<1..220)
                     /locus_tag="SB143_002152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002929372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750634.1"
                     /translation="MTEIQFNEIKERLADWRSERGLTYENQREEFLGNVFEKVSEYFR
                     AKDDLERVEALCDIAVFFFNAFELKFGEI"
     gene            complement(226..546)
                     /locus_tag="SB143_002153"
     CDS             complement(226..546)
                     /locus_tag="SB143_002153"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750635.1"
                     /translation="MKLVDKLKKAYDYKKELYRAEKGSSSKEDFIELELLQCEDIERR
                     YFLMQIYRYGYQNIRSLNSKLAFKAKLDNDDINFIKILKEANILHALNEIYTTKEVKK
                     IAKD"
     gene            complement(546..929)
                     /locus_tag="SB143_002154"
     CDS             complement(546..929)
                     /locus_tag="SB143_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750636.1"
                     /translation="MKLKDFDFRIWDKHHKGCGNKDCKCQTKYVYGEEAKTRLSEFKE
                     DCEIELFTGLYDKKGKKVYENDIVKVKSLYDYFLAKISIHKEGTFYFEGKNGDYIGSL
                     IYLVEDEGYTIEAIGNINENAELLK"
     gene            complement(910..>1080)
                     /locus_tag="SB143_002155"
     CDS             complement(910..>1080)
                     /locus_tag="SB143_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750637.1"
                     /translation="KINWKNYINKEDLKKVYTIYKNKPHERNFFHEEKLIVKAFEDVE
                     KFLRSENETKRF"
BASE COUNT          326 a          202 c           95 g          457 t
ORIGIN      
        1 aaatttctcc aaattttaat tcaaaagcat taaagaaaaa tactgcaata tcacacaaag
       61 cttcaactct ttctaaatca tcttttgctc taaaatactc gcttactttt tcaaaaacat
      121 tacccaaaaa ctcttctctt tgattttcat aggttaaacc tctttcactt ctccaatcgg
      181 ctaatctttc tttaatttca ttaaattgta tttctgtcat cttttttaat cctttgctat
      241 ctttttaact tcttttgtgg tataaatctc atttaaagca tgcaagatat tagcttcttt
      301 tagtattttt ataaagttga tatcatcatt atcaagtttt gctttaaaag ctaattttga
      361 gtttaaagat cttatgtttt gataaccata tctataaatt tgcattaaaa aatatcttct
      421 ttcgatatct tcgcattgca ataattctaa ttctataaaa tcttctttag agcttgagcc
      481 tttttcggct ctataaagct cttttttgta atcataagct tttttaagct tatcaactaa
      541 tttcattatt ttagcaactc cgcattctcg ttgatattgc cgatagcttc aatagtatat
      601 ccttcatctt caactaaata aattaaagag cctatgtaat ctccattttt tccttcaaaa
      661 taaaaagtcc cttctttgtg aatgctgatt tttgctaaaa agtaatcgta tagactttta
      721 actttaacaa tatcattctc gtatactttt ttacctttct tgtcataaag ccctgtaaaa
      781 agctctattt cacaatcctc tttaaactca gataaccttg ttttggcttc ttcaccataa
      841 acatattttg tttggcattt gcaatcctta ttaccacaac ccttgtgatg cttatcccaa
      901 atcctaaaat caaaatcttt tagtttcatt ctcactcctt aaaaatttct caacatcttc
      961 aaaagcttta acaataagct tttcttcatg aaagaaattt ctttcatgtg gcttgttttt
     1021 ataaattgta taaacttttt taagatcttc tttgtttatg taatttttcc aatttatctt
//
LOCUS       DARAII010000250         1031 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.273, whole genome shotgun sequence.
ACCESSION   DARAII010000250 DARAII010000000
VERSION     DARAII010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.273"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>1031
                     /locus_tag="SB143_002156"
     CDS             <1..>1031
                     /locus_tag="SB143_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-70 family RNA polymerase sigma factor"
                     /protein_id="HEF9750638.1"
                     /translation="KKEDERTLKVIEKFKALEKAKKDWLKVSKDKESGDEILDKLGIA
                     FKKNILKEKLMDLGPTSKLISEIVKSMETALKSDEEFDKELKRLEYRLPMFSEELKNR
                     HANILKDITKLSKEEITERALETTMVSTYMEIKKLFQTKEASEKSFDLEKERLKEILE
                     QIKRGKKISDEAKTRMAKSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEY
                     KRGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINQINKIIREHLQKDGKEPD
                     VSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGSEDDGKFGDFVEDRNSLSPMDHILK
                     DDLKEQIDEV"
BASE COUNT          430 a          134 c          199 g          268 t
ORIGIN      
        1 aaaaaagaag atgaaagaac tttaaaagtc atagaaaaat ttaaagcttt agagaaagca
       61 aaaaaagatt ggctaaaagt ttctaaagat aaagaaagtg gagatgaaat tttagacaaa
      121 cttggaattg cttttaagaa aaatattcta aaagaaaagc tgatggatct aggtccaact
      181 tctaaactca tcagtgaaat tgtaaaatca atggaaactg ccttaaaaag cgatgaagaa
      241 ttcgataaag aattaaaacg cctagaatac cgtttgccaa tgttttctga agaattaaaa
      301 aatcgtcatg ctaatatctt aaaagatatt acaaaattaa gcaaggaaga aattaccgaa
      361 agagcgcttg aaacgactat ggtaagcact tacatggaga taaaaaaact ttttcaaact
      421 aaagaagcga gcgagaaaag ctttgactta gaaaaagagc gcttgaaaga aattttagag
      481 caaatcaaac gaggtaaaaa aatttctgat gaagctaaaa ctagaatggc taaatcaaat
      541 ttgcgtcttg ttgtaagtat tgctaagcgt tatacaaacc gtggtttacc ttttttagat
      601 cttatccaag aaggcaatat aggtcttatg aaagcagtgg ataaatttga gtacaaaaga
      661 ggatataaat tttcaaccta tgcaacttgg tggataagac aagctatttc aagagcgatc
      721 gcagaccaag ctagaactat aagaatacct attcatatga tagaaaccat caatcaaatc
      781 aataaaatta tacgcgagca tttgcaaaaa gacggaaaag agcctgatgt aagtgttata
      841 gccaaagaag taggacttag tgtggataag gttaagcaag tgattaaaat cacaaaagag
      901 cctatttcac ttgaggcgcc tattggtagt gaagatgatg gcaaatttgg ggattttgta
      961 gaagatagaa attcactctc gcctatggat cacattttaa aagatgattt aaaagagcaa
     1021 attgatgaag t
//
LOCUS       DARAII010000251         1030 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.274, whole genome shotgun sequence.
ACCESSION   DARAII010000251 DARAII010000000
VERSION     DARAII010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.274"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..463)
                     /locus_tag="SB143_002157"
     CDS             complement(<1..463)
                     /locus_tag="SB143_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEF9750639.1"
                     /translation="MKKDSYTKPNNTLLCDFYELTMMQGYFLNGFENKTAYFDIFFRK
                     IPDHGSFAIFAGLEDILDFVSCLHFDEDDIAYLHSQGIFKEEFLRYLKNFKFKGEIYA
                     MQEGEIIFPNEPLMIIKANAIEAQILESFLLLSINHQSLIATKANRIVRAAK"
     gene            complement(485..>1030)
                     /locus_tag="SB143_002158"
     CDS             complement(485..>1030)
                     /locus_tag="SB143_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEF9750640.1"
                     /translation="IYEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGK
                     MLGSAQMIRFIQRDEITHLLLFQNMINSVRKERPDLFNENNINKIYDMFKKAGDLEIK
                     WGKYITQNQIMGFTDDIIEEYIHYLVDQRLVAINLDKIYNAKHPIKWVDDFSKFNDQK
                     SNFFESKVTNYSKGSISFDDF"
BASE COUNT          345 a          163 c          150 g          372 t
ORIGIN      
        1 ttttagctgc tcttacgata cgattggctt ttgtggcaat taggctttga tgattgatac
       61 ttaaaagtaa gaagctttca agaatttgtg cttcaatagc attggctttg atgatcatca
      121 agggttcgtt aggaaagatg atttcgcctt cttgcatggc ataaatttcg cccttaaatt
      181 taaaattttt caaatatctt aaaaattctt ctttaaatat cccttgagag tgcaaatagg
      241 ctatatcatc ttcatcaaaa tgtaaacaag atacaaagtc taaaatatcc tcaagtcctg
      301 caaatatagc aaaagagccg tgatcgggaa tttttctaaa aaatatatca aaataagctg
      361 ttttgttttc aaaaccattt agaaaataac cttgcatcat ggttaattca taaaaatcac
      421 aaagcaaggt gttatttggt tttgtataag aatctttttt cataaaagtt aatttccaag
      481 aaatttaaaa atcatcaaag cttatactac ctttagaata gtttgtgacc ttactttcaa
      541 agaaattgct tttttgatca ttaaatttag aaaaatcatc tacccatttg atagggtgtt
      601 ttgcattgta aattttatca agattgatag caacaagtct ttgatctaca agatagtgga
      661 tgtattcttc tataatatcg tctgtaaaac ccatgatttg attttgagtg atgtatttgc
      721 cccatttgat ttctaaatcg cccgcttttt taaacatatc ataaattttg ttgatattgt
      781 tttcattaaa caaatcaggt ctttctttac gaactgaatt gatcatattt tgaaagagta
      841 aaagatgagt gatttcatct ctttgaatga aacgaatcat ttgagcagaa ccaagcattt
      901 tacctgctct tgcaagcgcg taaatcgcag taaatccact ataaaaatat actccttcta
      961 aaatttgatt tgctaccatg gccaaaagaa gtttattatc atctacatcg cccgctaatt
     1021 cttcatagat
//
LOCUS       DARAII010000252         1023 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.275, whole genome shotgun sequence.
ACCESSION   DARAII010000252 DARAII010000000
VERSION     DARAII010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.275"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>1023
                     /gene="aldA"
                     /locus_tag="SB143_002159"
     CDS             <1..>1023
                     /gene="aldA"
                     /locus_tag="SB143_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HEF9750641.1"
                     /translation="KSAIGVIGGILPWNFPFFLIARKMAPALLTGNTIVIKPSSETPN
                     NAFEFAKLVSQSSLPKGVFNLVAGKGSVVGHELSSNENIGMVSLTGSVEAGIRVMEAA
                     AKNIIKVSLELGGKAPAIVCKDADIDLAVEAIKASRICNNGQVCNCAERAYVHTSVYD
                     EFVDKFVKAMSKVSVGNTLKGDFDMGPLVNQTGVDNALAMLQRATAKGAIVECGGKIT
                     DTSGYYFPASVLTNVKHEDEIMQKEIFAPILPIVKFDTLDEAIDMANDCEYGLTSSIY
                     TQNLDIAMRASREIKFGETYINRENFEAMQGFHAGFRKSGIGGADGKHGLEEYLATHV
                     VYLQYNT"
BASE COUNT          342 a          128 c          238 g          315 t
ORIGIN      
        1 taaaagtgct attggggtaa ttggtggaat tttaccttgg aattttccat ttttcttaat
       61 cgcaaggaag atggcacctg ctttactaac aggaaatact attgttataa agccaagcag
      121 tgaaactcca aacaatgctt ttgaatttgc aaagcttgtt tcgcaaagtt ctttgccaaa
      181 aggtgtattt aatttggttg caggtaaagg cagtgtagta ggacatgaat tatcaagcaa
      241 tgaaaatata ggtatggtaa gtcttactgg aagtgttgaa gcagggatta gagtaatgga
      301 agctgcggct aaaaatatca ttaaagtttc tttggagctt ggtggaaaag caccggctat
      361 agtgtgcaaa gatgcggata ttgatttggc agtagaggcg attaaggcaa gtagaatttg
      421 taataacgga caagtttgca attgtgctga aagagcttat gtgcatacaa gtgtttatga
      481 tgaatttgta gataaatttg taaaagccat gagtaaggta agcgttggaa atactttaaa
      541 gggtgatttt gatatgggac cgcttgtcaa tcaaacaggg gttgataatg ctttagcaat
      601 gcttcaaaga gctacagcta aaggagcgat tgtagaatgt ggtggaaaaa tcaccgatac
      661 aagtggatat tattttcctg caagcgttct tactaatgtt aaacacgaag atgagattat
      721 gcaaaaagaa atttttgctc cgattttgcc tattgttaaa tttgatacac ttgatgaagc
      781 aattgacatg gcaaatgatt gtgaatatgg acttacaagt tctatttata cgcaaaattt
      841 agatatagct atgagagcca gtagagaaat taaatttggc gaaacttata taaaccgtga
      901 aaattttgaa gccatgcaag gttttcatgc aggttttaga aaaagtggca taggtggagc
      961 tgatggaaaa catggtcttg aagagtattt agctactcat gtagtttatc tgcaatataa
     1021 tac
//
LOCUS       DARAII010000253         1019 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.276, whole genome shotgun sequence.
ACCESSION   DARAII010000253 DARAII010000000
VERSION     DARAII010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.276"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>1019)
                     /locus_tag="SB143_002160"
     CDS             complement(<1..>1019)
                     /locus_tag="SB143_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750642.1"
                     /translation="DIESKNSQTLARSEVLSNNNALNNSSNSTNISNSSNTNLSINNA
                     TKTSSPNYDISSEFKNSIYTLKYKQADISTSTNTAYGYSVDKDGYMGSDFNKAAGLPE
                     DFKIHKSTLDEIKKAAENEPYIADMKQYFGVSEYYTNIDMAETIKQYYNLFSNALGQS
                     FPNDKTSFSEADINSMPKGYAINGIKSMDFNDPSNRMNITHLRDFSNSLISNVYKTPE
                     QAKEADEIWLDSGCMIKGLSSETLGLSLEEIKNVSKGEDWQFNPDMSVYPQNEDGSYS
                     KETLFMSFLKSQGGQPVESLKTTLNPKVEAYNRAMAKESFSGPAIHLDSIMTGKSDFK
                     SFFRY"
BASE COUNT          320 a          165 c          135 g          399 t
ORIGIN      
        1 gtatctaaaa aagcttttaa agtcactttt acctgtcata atactatcta agtgtatggc
       61 tggaccacta aaactctctt tagccatagc tctattataa gcttctactt ttggattaag
      121 tgtggttttt agactctcaa caggttgtcc accttgagat tttaaaaaac tcataaacaa
      181 agtttcttta gaatagcttc catcttcatt ttgtggataa actgacatat caggattaaa
      241 ctgccaatct tcacctttag aaacattttt gatttcttct aaggataaac ctaaagtctc
      301 agatgataat cctttgatca tacatcctga atcaagccaa atttcatcag cttcttttgc
      361 ttgttcaggg gttttataaa catttgaaat taaagaattt gaaaaatctc ttaggtgagt
      421 gatattcatt ctattgcttg gatcattaaa atccatcgat tttattccat ttatagcata
      481 ccccttaggc atagaattta tatctgcttc actaaaactt gttttatcat ttggaaaact
      541 ttgacctaaa gcattggaaa aaagattata atattgtttt atggtttcag ccatatcgat
      601 attagtataa tactcactta caccaaaata ttgtttcata tctgcaatat aaggttcatt
      661 ttcagcagct tttttaatct catccaaagt agatttatgt atcttaaaat cttcaggtaa
      721 tcctgcggct ttgttaaaat cacttcccat ataaccatct ttatctacac tataaccata
      781 ggctgtattg gtagaagtgc ttatatctgc ttgtttatat tttagagtat aaatagagtt
      841 tttaaattca ctagatatat cataattagg agaacttgtt ttagtagcat tattaatact
      901 aaggttagta ttactactat ttgatatatt agtagaattt gaactattgt ttaatgcatt
      961 gttattgctt aatacttcac ttcttgctag agtttgtgaa tttttacttt ctatatcac
//
LOCUS       DARAII010000254         1016 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.277, whole genome shotgun sequence.
ACCESSION   DARAII010000254 DARAII010000000
VERSION     DARAII010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1016)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.277"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..164
                     /locus_tag="SB143_002161"
     CDS             <1..164
                     /locus_tag="SB143_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEF9750643.1"
                     /translation="KAKIKSYGDHRIAMSFAILGLLCGMEIDESECIKTSFPNFMDIL
                     TKIGARIDY"
     gene            154..984
                     /locus_tag="SB143_002162"
     CDS             154..984
                     /locus_tag="SB143_002162"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEF9750644.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEIARL
                     QKNFNVKTLENIRALSDEKKAIIRTHGITKQDLEELKKKDIEIFDATCPFVTKPQQIC
                     EQMSAEGYDVVILGDENHPEVKGVRSYVATKAYVVLDKKDLENIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILRVKEVRVFNTICDATFKNQDAIKELSVKSDVMVVVGGKNSANTK
                     QLFLIAKANCEDSYLIETEEELQKEWFLNKTHCGISAGASTPDWIIKKVIAKIESFKC
                     "
BASE COUNT          397 a          123 c          191 g          305 t
ORIGIN      
        1 aaaaagctaa aataaaaagc tatggggatc accgtattgc catgagtttt gcgattttag
       61 gcttactttg cggaatggag attgatgaaa gtgagtgtat taaaacttct tttcctaact
      121 ttatggatat tcttacaaaa ataggagcta ggattgatta ttgaattagc taaaaattat
      181 ggcttttgtt ttggtgtaaa aagagcaatt aaaaaagctg aacaaattaa agatgcggca
      241 accatagggc cgcttatcca taataatgaa gaaattgctc gcttgcaaaa gaatttcaat
      301 gttaaaacct tagagaacat aagagcttta agtgatgaaa aaaaagccat tataagaaca
      361 catggaatta ctaagcaaga tttagaagag cttaaaaaga aagatattga aatttttgat
      421 gcaacttgtc cttttgtaac caaaccacag caaatttgtg aacaaatgag tgcagaaggc
      481 tatgatgtgg taattcttgg cgatgaaaat catcctgaag ttaagggtgt aagaagctat
      541 gtagccacaa aagcttatgt agttttagat aaaaaagatc ttgaaaatat taaattacct
      601 aataaaatag cagttgtaag tcaaacgact aaaaaacctg aacattttat ggaaatagtt
      661 aattttttaa ttcttagggt taaagaagta agagttttta atacaatttg tgacgcaact
      721 tttaaaaatc aagatgctat taaagaactt tctgtcaaaa gtgatgtgat ggtagttgtc
      781 ggaggtaaaa attcagccaa taccaaacaa ctttttttaa tagctaaggc aaactgcgaa
      841 gatagctatt tgatcgaaac cgaagaagaa ttgcaaaaag aatggttttt aaataaaaca
      901 cattgcggaa ttagcgctgg agctagtacg cctgattgga ttattaaaaa agttatagcc
      961 aaaatagaat cgtttaagtg ctaaaattgt gatattttat tttttcaaaa agtaaa
//
LOCUS       DARAII010000255         1010 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.278, whole genome shotgun sequence.
ACCESSION   DARAII010000255 DARAII010000000
VERSION     DARAII010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.278"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            57..485
                     /locus_tag="SB143_002163"
     CDS             57..485
                     /locus_tag="SB143_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEF9750645.1"
                     /translation="MIKKIRILFLAIFLAFSPMVLEAKIYDDVYVAQKQALKEAKLMI
                     FFVVSNTCEYCHKLMNDVLNNRDLMEYLNKNFIVAISDLNANGLIPKDLLFNGVTPTT
                     YILTPTGKVIGTPIEGAVDSDILFGLLKGLEDYKKGQLGF"
     gene            487..>1010
                     /locus_tag="SB143_002164"
     CDS             487..>1010
                     /locus_tag="SB143_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3825 domain-containing protein"
                     /protein_id="HEF9750646.1"
                     /translation="MEKNIEKLILEAYEDSKTKFDHVTTGHISQYLKRKYDLKINCSK
                     ALIEAGFDLEKDENEPSLVYVKKATTRNKTSNRDQIQNKVEEKPLLFQFAYFPNFLNT
                     LQELSNITQKEFWGNGNNILFSYLFKYFEFIYENKSYPDIITYNKDKTKACFNTGLYS
                     TGVFPIFAYFEIQE"
BASE COUNT          393 a          127 c          156 g          334 t
ORIGIN      
        1 ttttagaaga taaaattgca aatcagattg caggattatt ctaaaaagga tattgcatga
       61 taaaaaaaat aagaatctta tttttagcta tctttttagc ctttagccct atggtgctag
      121 aggctaaaat ctacgatgat gtatatgtag cacaaaagca agcattaaaa gaagcaaaat
      181 taatgatttt ttttgtggtt tcaaacactt gcgaatattg tcacaagctt atgaatgatg
      241 tgttaaataa tagagattta atggaatacc ttaacaaaaa tttcattgtt gctatttctg
      301 atttaaatgc caatggatta atacctaaag acttattgtt taatggtgta actccaacaa
      361 cttatatttt aactccaaca ggaaaagtaa taggcactcc tattgaagga gcggttgatt
      421 ctgacatact ttttggacta ttgaaaggtt tagaagatta taagaaggga caattaggtt
      481 tttagcgtgg aaaaaaacat agaaaaatta attttagaag cctatgaaga tagtaaaact
      541 aaatttgacc atgttactac aggacatatc agtcaatatt tgaaaagaaa atatgattta
      601 aaaatcaatt gtagtaaggc attaatagaa gcaggctttg atcttgaaaa agatgaaaac
      661 gaaccttctt tagtttatgt taaaaaagct accacaagaa acaagacttc aaatcgtgat
      721 caaattcaaa acaaagttga agagaaacct ttgttgtttc aatttgccta ttttccaaat
      781 tttctaaata cactccaaga gctttctaat ataactcaaa aagaattttg gggaaacgga
      841 aataatattt tattttctta tctatttaaa tattttgagt tcatttacga aaataaaagc
      901 tatcctgata ttattactta taataaagac aaaacaaagg catgtttcaa tacaggtttg
      961 tatagtacag gtgtttttcc aatatttgca tactttgaaa ttcaagaaaa
//
LOCUS       DARAII010000256         1001 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.279, whole genome shotgun sequence.
ACCESSION   DARAII010000256 DARAII010000000
VERSION     DARAII010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.279"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>1001
                     /gene="ligA"
                     /locus_tag="SB143_002165"
     CDS             <1..>1001
                     /gene="ligA"
                     /locus_tag="SB143_002165"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEF9750647.1"
                     /translation="DEPLASDEEYDALIRELRVFEEQNKDEISKDSPTQKIAPTIQSE
                     FKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNFFIEPKFDGASLNLLYENGKLVSG
                     ATRGDGEVGEDITLNVLEIDNIPKTINYKEKIEIRGEVVILKDDFEKINEKRALLNQS
                     LFANPRNAASGSLRQLDTSITKERNLKFYPWGVGENTLNFTKHSEVMQFIRELGFLKD
                     DFIKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELGYTVKFPKFMAA
                     FKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARLDV"
BASE COUNT          360 a          136 c          222 g          283 t
ORIGIN      
        1 gatgaaccct tggctagcga tgaagaatac gatgctttaa tcagagaatt aagagttttt
       61 gaagaacaaa ataaagatga aatttcaaaa gactctccaa cgcaaaaaat agctcctact
      121 atacaaagcg agtttaaaaa aatagctcat ttaaagcgta tgtggtcgat ggaagatgtg
      181 tttgatgaga gtgagcttag ggcttgggca aaacgcgcaa aatgtgaaaa aaactttttt
      241 atagagccta aatttgatgg agcgagttta aatttgcttt atgaaaatgg taaattagta
      301 agcggcgcca ctagaggcga tggcgaagtg ggtgaggata taacgcttaa tgtgcttgaa
      361 atcgacaata tcccaaaaac tataaattat aaagaaaaga tagaaattcg tggagaagtg
      421 gtgattttaa aagatgattt tgagaaaatc aacgaaaaaa gagccctttt aaatcaaagt
      481 ttatttgcca atccacgcaa tgctgcaagt gggagtttaa ggcagcttga tacaagtatc
      541 actaaagaaa gaaatttgaa attctatcct tggggagtag gggaaaatac cttaaatttt
      601 accaagcaca gcgaagtgat gcaatttatc agagagcttg gctttttaaa agatgatttt
      661 attaagcttt gtgctaattt agacgaagtt ttaaaagctt ataacgagct tttaagccta
      721 agagatcaaa agcctatgat gatggatgga atggtggtaa gagttgatga tcttgcactt
      781 tgcaaagagc taggctatac ggtaaaattt ccaaaattta tggcagcttt taaatttccc
      841 gcacttgaaa aaaccacgcg tttaatagga gtaaatttac aagtaggaag aagcggagtg
      901 atcactcctg tggcggtttt agagcctgta aatttagatg gggttatcgt aaaatctgcc
      961 acacttcata attttgatga gattgcaaga cttgatgtta a
//
LOCUS       DARAII010000257         1001 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.280, whole genome shotgun sequence.
ACCESSION   DARAII010000257 DARAII010000000
VERSION     DARAII010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1001)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.280"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>1001)
                     /gene="ligA"
                     /locus_tag="SB143_002166"
     CDS             complement(<1..>1001)
                     /gene="ligA"
                     /locus_tag="SB143_002166"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEF9750648.1"
                     /translation="DEPLASDAEYDALIRELRAFEEQNENEISPDSPTQKIAPTIQSE
                     FKKLSHLSRMWSMEDVFDESELRAWAKRARCEENFFIEPKFDGASLNLLYDQGKLISG
                     ATRGDGEIGEDITLNVLEIDNIPKTINYKEKIEIRGEVVILKDDFEKINEKRARLNQS
                     LFANPRNAASGSLRQLDTSITRERNLKFYPWGVGQNSLEFSKHSEIMSFIRELGFLKD
                     DFVKLCANLDEVLKAYNELLSLRDQKPMMMDGMVVRVDDLALCKELGHTVKFPKFMAA
                     FKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVNLDGVIVKSATLHNFDEIARLDA"
BASE COUNT          285 a          229 c          137 g          350 t
ORIGIN      
        1 tttgcatcaa gtcttgcaat ttcatcaaaa ttatgaagtg tggcagattt tacgataacc
       61 ccatctaaat ttacaggctc taaaaccgcc acaggagtga taaccccgct tcttccaacc
      121 tgcaaattta cccctattaa acgcgtggtt ttttccaagg ctggaaattt aaaagctgcc
      181 ataaattttg gaaatttcac agtatgacct agctctttgc aaagcgcaag atcatctact
      241 cttactacca ttccatccat catcataggc ttttgatctc ttaggcttaa aagctcgtta
      301 taagctttta aaacctcatc taaatttgca caaagcttta caaaatcatc ttttaaaaag
      361 ccaagctctc ttataaaact cataatctcg ctgtgtttac taaattcaag tgagttttgc
      421 cccactcccc aaggatagaa tttcaaattc ctttctcttg tgatgcttgt atcaagttgt
      481 cttaaactcc cacttgcagc attgcgtgga tttgcaaaca agctttggtt taaacgggct
      541 cttttttcat tgattttttc aaaatcatct tttaaaatca ccacttcacc gcgaatttct
      601 atcttttctt tatagtttat agtttttggg atattgtcga tttcaagcac attaagcgtg
      661 atgtcctcac ctatttcccc atctcctctt gtcgcaccgc ttattaattt accctgatcg
      721 taaagtaaat ttaaacttgc tccatcaaat ttaggctcta taaaaaaatt ctcttcacat
      781 cttgcacgct ttgcccatgc tctaagctca ctctcatcaa aaacatcttc catcgaccac
      841 atacggctta aatgagaaag ttttttaaat tcgctttgta tagtaggggc tattttttgc
      901 gtaggagaat caggagaaat ttcattttca ttttgctctt caaaagctct taattctcta
      961 atcaaagcat cgtattctgc atcacttgct aaaggctcat c
//
LOCUS       DARAII010000258          995 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.281, whole genome shotgun sequence.
ACCESSION   DARAII010000258 DARAII010000000
VERSION     DARAII010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 995)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.281"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
BASE COUNT          379 a          167 c          141 g          308 t
ORIGIN      
        1 gagagatttt aaaaaatccc tcaaagcccc caaacaaaat aattactcgg actattataa
       61 ataaaaaatt ctaataaaat acttataaaa aactaaaaca aactctaaaa aatataactc
      121 tacaattaag tatccaaatc aatattttat aaaaaaagat aaaacttagc tattttttca
      181 taggataagc taaaacattg attttataat gatttaaata tatagtattt ttaatttttt
      241 agctatgtgt gtgtccccca cgcgcacgcg tatactaatt atgtcaaatg aatttttata
      301 atattctagc catccaatga aaattagggc ttcgcccttt tacaccaaaa agaaaaacta
      361 gaatttcatt tcagcttaaa catcaactag ccatttaaag cattttaatg ggtctattat
      421 gctttaaaaa taaaaagtaa tacccaaata gcactaaaag ccttttaggc tctcacagct
      481 ctctaaagtg gcaaaaataa gatttttctc ttttttggtg taagggggtt tgggggctta
      541 cccccaagta aaataaaatt acaagcacaa agtgcttgtt ttaccgatat tctaaaagat
      601 taaagttaag atttgaagca ttcaagtggc tgtgcgacat tttattttgt gatttaaatt
      661 aacaacgcat atcagaaaca gccctacggc actttccaac aaaaatcgac aaaagaaaaa
      721 ccgcaaaggc tctgtgacct ttacggttat aggaaatagt aattctattg tatggagatt
      781 gtacttctac tttcaaggtg agaagtaccg ttgcactggc agaaattttt ttaactggtt
      841 tcctgccgtt ctctgatatg ctatgtattg ataaattttg cttcgtatga gcagatagat
      901 aactgcccga aaaaaggaca taaaaaaatc cctccaaatt taaaaacaaa ttcagagggt
      961 aatttagggt ataacaaaat aacccacccg aatat
//
LOCUS       DARAII010000259          994 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.282, whole genome shotgun sequence.
ACCESSION   DARAII010000259 DARAII010000000
VERSION     DARAII010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.282"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..159)
                     /locus_tag="SB143_002167"
     CDS             complement(<1..159)
                     /locus_tag="SB143_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002806884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750649.1"
                     /translation="MNPSKRVLKLSLLVFLLSTGINAQELNDKAIQMQKVVVSATGFE
                     QDADNNLRN"
     gene            363..>994
                     /locus_tag="SB143_002168"
     CDS             363..>994
                     /locus_tag="SB143_002168"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEF9750650.1"
                     /translation="MSFESIISHMNDHHQSNLIDLCKKFGAVKDPKGVRLVGVDFEGL
                     DIAYNDKENLRIEFPKKANEETLKDAIIELCMSAKTKKDLSGVAREAKEFMLSFNSVS
                     LATLSADKEVVCSYAPFVNTPWGNYIYISEVSEHFNNIKENPNNIEIMFLEDESKAAS
                     VILRKRLRYKVKASFIERGEVFDKIYDEFEKQTGGEGGIKTIRNMLDFHLV"
BASE COUNT          356 a          116 c          177 g          345 t
ORIGIN      
        1 attacgcaag ttattgtctg catcttgttc aaatcctgtt gcacttacaa caactttttg
       61 catttgaatg gctttatcat tcaattcttg tgcattgata ccagtgctta gtaaaaatac
      121 tagtaaagat agctttaaaa ctcttttgct tggattcaaa tttttactcc ttttaaataa
      181 aataaataat gataatatat atcataatat ttgaagagaa aatttatctt ttataagctt
      241 aaattagaat aaatttttga aaattaaacg attttaatct ttttaagtaa tttttaattt
      301 gataattgat accattttta acttatattt tgttctataa atttaaagaa aggataaaga
      361 taatgagttt tgaaagtatt atttctcata tgaacgatca tcatcaatcc aatttgatcg
      421 atctttgtaa aaaatttggg gcagtgaagg atcctaaggg agtaagattg gtcggagttg
      481 attttgaggg cttggatata gcttataatg ataaagaaaa tttacgcata gaatttccta
      541 aaaaagcaaa cgaagaaacc cttaaagatg ctattatcga actttgtatg agtgcaaaga
      601 ctaaaaaaga tcttagcgga gtggcaagag aagcaaaaga gtttatgttg agttttaatt
      661 cggtttcttt agcgacttta agtgcagata aagaggtggt ttgttcttat gcaccgtttg
      721 taaatactcc atggggaaat tatatttata tcagtgaagt aagcgagcat tttaataata
      781 tcaaagaaaa tccaaacaat atagaaataa tgtttttaga ggatgaaagc aaggcagctt
      841 ctgttatact tcgtaaaaga ttgcgttata aggttaaggc tagttttatc gagcgtgggg
      901 aagtgtttga taaaatttat gatgaatttg aaaaacaaac aggcggcgaa ggcggaataa
      961 aaaccatacg caatatgctt gatttccatc ttgt
//
LOCUS       DARAII010000260          984 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.283, whole genome shotgun sequence.
ACCESSION   DARAII010000260 DARAII010000000
VERSION     DARAII010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 984)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.283"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>984
                     /locus_tag="SB143_002169"
     CDS             <1..>984
                     /locus_tag="SB143_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="major outer membrane protein"
                     /protein_id="HEF9750651.1"
                     /translation="SNEWSDINGVAQNEGSGISGKQDHKYRAQLNFSGAIADNFKAFV
                     QLDYNAKDGGYGANNGSTTRSDSSKLNVRQLYLTYTDENVATSVILGKQQLNTIWTDN
                     AIDGLVGTGVKVVNNSIDGLTLAAFAVDSYNSDEQAGDLGTTVLNFNENLYGAAAIGS
                     YEVFNGQLNPQLWLAYMTDNAFFYAVDAAYNTTIFDGVNWTLEGAYLGNSLDNERKDL
                     GNGNGNFFALNGSIEVNGWDATLGGLYYGKKDKATITVIEDQGNLGSLLAGEEIFYTN
                     GSKLNGDTGRNIFGFVKAGYTFNETVRVGADFVYGGTKTENHSGGEKLEAV"
BASE COUNT          328 a          154 c          209 g          293 t
ORIGIN      
        1 caagcaatga gtggagtgat atcaatggtg tagctcaaaa tgaaggtagc ggtatctctg
       61 gaaaacaaga tcacaaatac agagctcaac ttaacttcag cggtgctata gcagacaact
      121 tcaaagcttt cgttcaactt gactataatg caaaagatgg tggttatgga gcaaataatg
      181 gttctacaac tcgttctgat tcatcaaaat tgaatgttcg ccaattatac ttaacttaca
      241 cagatgaaaa tgtagctaca agtgtaatcc taggtaaaca acaacttaac accatctgga
      301 ctgataatgc aatcgatggt ttagtaggaa caggtgttaa agtagtaaac aacagcattg
      361 atggtttaac cctagctgct tttgctgtag atagctataa cagcgatgag caagctggag
      421 atttaggcac aacagtttta aatttcaatg aaaatcttta tggtgctgca gctatcggtt
      481 cttatgaagt atttaatggt caattaaacc cacaattatg gttagcttat atgactgaca
      541 atgctttctt ctatgctgta gatgcagctt ataacactac tatctttgat ggggtaaatt
      601 ggactcttga aggtgcttat ttaggaaaca gccttgataa tgagcgcaaa gatcttggaa
      661 atggaaatgg taacttcttt gctttaaacg gtagtattga agtaaatggt tgggatgcaa
      721 ctcttggtgg tttatactac ggtaaaaaag ataaagctac cataactgta atcgaagatc
      781 aaggtaatct tggctcttta cttgcaggtg aggaaatttt ctatacaaat ggttcaaaac
      841 taaatggtga cactggtaga aatatcttcg gatttgttaa agcaggttat actttcaacg
      901 aaacagttcg tgtaggtgct gacttcgtat acggtggaac taaaacagaa aatcattctg
      961 gtggagaaaa acttgaagca gttg
//
LOCUS       DARAII010000261          979 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.285, whole genome shotgun sequence.
ACCESSION   DARAII010000261 DARAII010000000
VERSION     DARAII010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.285"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            65..508
                     /locus_tag="SB143_002170"
     CDS             65..508
                     /locus_tag="SB143_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEF9750652.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFELANLEKLKEELSKVTLEILKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGTHEVSVKLGHAIHAKFNINIKAE"
     gene            508..>979
                     /gene="hslV"
                     /locus_tag="SB143_002171"
     CDS             508..>979
                     /gene="hslV"
                     /locus_tag="SB143_002171"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEF9750653.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHANLDEEELVKSSL"
BASE COUNT          377 a          137 c          202 g          263 t
ORIGIN      
        1 tgaatgcttt gcgttttatt attgcaggaa aaaacggaag aaaattttaa acaaggatta
       61 aaaaatgaaa gtattattaa tcaaagatgt taaagctctt ggaaaagcag gcgaaatcaa
      121 agaagtaaaa gatggttatg gtcaaaattt tctcattgct aaaggctttg ctaaggcagc
      181 aacaaatgaa gttttaagaa aatacgaaag tgataagaaa aaagaagcgg agaatttacg
      241 ctttgaactt gcaaatttag aaaaactaaa agaagaactt agcaaagtta cacttgaaat
      301 tttaaagcct gtaggagcta atggaagctt gtttggtggg gtaactaaag atgaaatcgc
      361 tcatgcttta aaagaacaaa gccatataga aatcgataaa aaaagcttag aatgcgatac
      421 cttaaaaagc cttggaactc acgaagttag cgttaagtta ggtcatgcta tccacgcaaa
      481 atttaatata aacataaagg ctgaataatg tttcacgcaa caactatttt agcttacaaa
      541 ggcaaaaaca aatccgtaat cggaggagat ggtcaagtaa gctttggaaa tacggtgcta
      601 aaaggcaatg ctgtaaagat tagaaaactc aacaacggca aagttttagc aggttttgca
      661 ggatccacag ctgatgcttt taatcttttt gatatgtttg aaaacctact tcaaagctct
      721 aagggtgatc ttttaaaggc agcgattgat ttttctaaag aatggcgaaa agataaatat
      781 ctaagaaaac ttgaggctat gatgctagtg cttgatagaa atcatatttt cttactttca
      841 ggtacaggcg atgtagttga acctgaagat ggacaaatcg cagctatagg aagtggtgga
      901 aactatgcac tttcagctgc cagagctttg gcaaaacatg caaatttgga tgaagaagaa
      961 ctagtcaaat caagtcttc
//
LOCUS       DARAII010000262          973 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.286, whole genome shotgun sequence.
ACCESSION   DARAII010000262 DARAII010000000
VERSION     DARAII010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 973)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 973)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.286"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>973
                     /gene="cueO"
                     /locus_tag="SB143_002172"
     CDS             <1..>973
                     /gene="cueO"
                     /locus_tag="SB143_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEF9750654.1"
                     /translation="KKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGV
                     PVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVI
                     KAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLA
                     TNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDA
                     PKDGEFRLESAYYDRDKMMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFK
                     EIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKL"
BASE COUNT          368 a          153 c          172 g          280 t
ORIGIN      
        1 gtaaaaaaac cttattttat acttacaatg gcctcgtgcc tgctccaaaa atagaagttt
       61 ttgaaggaga taaacttgaa attttagtca aaaacaaact caaagaagct acaactatac
      121 attggcatgg cgttcctgta ccacctgatc aagatggaag cccacatgat cctatcttag
      181 caggagaaga aagaatatat cgttttgaaa ttcctcaaga tagcgcagga acttactggt
      241 atcatccgca tcctcattat accacttcta aacaagtctt tatgggttta gctggggctt
      301 ttgtgatcaa agcaaaaaaa gatgctttaa gtcatttaaa agaaaaagat ttgatgatta
      361 gcgatttgcg tcttgatgaa aacgctcaaa ttccaaacaa taacctaaat gattggctta
      421 atggtagaga aggagaattt gtactcatca atggacaatt taaacctaaa atcaaactcg
      481 ccacaaacga acgcatacgc atttataatg ctactgcagc aagatattta aatttacgca
      541 tacaaggggc taagtttata cttgttggta ctgatggtgg acttatagaa aaagctattt
      601 ataaagaaga acttttctta agtcctgctt ctcgtgtaga agttttaatc gacgctccaa
      661 aagatgggga atttagacta gaaagtgctt attatgatag ggataaaatg atggtaaaag
      721 aagaatctaa taccctattt ttagctagta ttagcctaaa aaaagaaaaa ttagaacttc
      781 caaaaaattt aaaaattttc aaacctttag aagaacctaa ggaatttaaa gaaataatca
      841 tgagtgaaga tcatatgcaa atgcatggaa tgatgggaaa aagtgaaaat gaattaaaaa
      901 tcgctcttgc gtctatgttt ttaatcaatg gcaaaagcta tgatttaaaa cgcattgatt
      961 taagctccaa gct
//
LOCUS       DARAII010000263          968 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.288, whole genome shotgun sequence.
ACCESSION   DARAII010000263 DARAII010000000
VERSION     DARAII010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 968)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 968)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.288"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(57..>968)
                     /locus_tag="SB143_002173"
     CDS             complement(57..>968)
                     /locus_tag="SB143_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEF9750655.1"
                     /translation="YLFVELSVLFIGISFLISIINQKYEGMFRKQLSGDKISSYFKAI
                     FLGALTPFCSCSTIPLLKAFLEARVKLSVCLAYLFTSPLINPIIFTILFVTFGLKLSL
                     MYVLFLVIFIFIISLIFSKFKEEYFLKHTPKNSAPSIFTQNAKNIGKIVFKPSSCCAN
                     TQNKTNDTKINFKKLFKESIANYKKLLPYIVIAVLIGALIHDFIPQEILQKYLSGNEI
                     LSIILAAFFGVLLYLRVETIIPIGLILLQMGISQGVIMSFLIAGAGCSLPELVLLKQM
                     FKMKFLLLFIAIILSVAISFGMLINFI"
BASE COUNT          361 a          139 c          155 g          313 t
ORIGIN      
        1 ctgctttcat cgttgatcgc tgaaatgatg gttaaaaact tttgcattta ttttccttat
       61 atgaaattta taagcatacc aaaagatatg gctacgctta aaatgatagc tataaacaat
      121 aataaaaatt tcatcttaaa catttgctta agtaaaacaa gttcgggtaa agaacacccc
      181 gcacctgcga ttaaaaaact cataatcaca ccttgagaaa ttcccatttg taaaagtatc
      241 aagcctatag ggatgatggt ttctactctt aagtaaagca aaactccaaa aaacgctgct
      301 aggataatgc ttaaaatttc attgccactt aggtattttt gtaaaatttc ttgagggatg
      361 aaatcatgga tcaaagctcc tataagcact gcgattacta tatagggtag caatttttta
      421 tagtttgcaa tactctcttt aaaaagtttt ttgaaattta tctttgtatc gttagttttg
      481 ttttgagtgt tagcacaaca agagcttggt ttaaagacta ttttacctat gtttttagca
      541 ttttgtgtga aaatgcttgg ggctgagttt ttaggagtat gttttaaaaa gtactcttct
      601 ttaaattttg aaaaaataag agaaattata aaaataaaaa ttactaaaaa caatacatac
      661 ataagactta atttcaagcc aaaggtaaca aaaagtatgg taaaaatgat aggatttata
      721 agaggtgagg taaaaagata agccaagcac acgctaagtt ttaccctagc ttccaaaaat
      781 gcttttaaaa gcggtatggt agagcaggag caaaaaggcg ttaaagcacc taaaaatata
      841 gctttaaaat agcttgaaat tttatctccg ctcagttgtt ttctaaacat tccttcatat
      901 ttttggttga taatgctaat aagaaaagaa attcctataa aaagcacaga aagctcgaca
      961 aatagata
//
LOCUS       DARAII010000264          967 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.290, whole genome shotgun sequence.
ACCESSION   DARAII010000264 DARAII010000000
VERSION     DARAII010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 967)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.290"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            7..456
                     /locus_tag="SB143_002174"
     CDS             7..456
                     /locus_tag="SB143_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin"
                     /protein_id="HEF9750656.1"
                     /translation="MKQVKGGYVVSLQAGSQWGVANEYYAVALYSSEEFLQGLCPLGQ
                     TTCSNHSMTMLTAFNQVVNQKYGEYGFFPVYKVKREVKVSDLGNPYVLFSYGTGALDS
                     KGQLYRFDSTTSGAHLNYNALIKDIAKHYKEQMESALGGWTPYRARR"
     gene            523..870
                     /locus_tag="SB143_002175"
                     /pseudo
     CDS             523..870
                     /locus_tag="SB143_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859749.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          349 a          134 c          176 g          308 t
ORIGIN      
        1 gatgagatga aacaagttaa gggtgggtat gtagtatcat tacaagctgg aagtcaatgg
       61 ggcgttgcca atgagtatta tgcagtagct ttatacagta gtgaagaatt tttgcaaggt
      121 ttatgtcctt taggacaaac aacttgcagt aaccatagca tgacaatgct tactgccttt
      181 aatcaagtag ttaatcaaaa atatggggaa tatggtttct ttcccgttta taaagtaaaa
      241 agggaagtaa aagtttccga tttgggaaac ccttatgtgc tttttagcta tggaacaggt
      301 gctttagatt caaaaggaca actttataga tttgatagca caacttctgg tgcccattta
      361 aactataatg cactaattaa agatattgcg aaacactata aagagcaaat ggaatcagct
      421 cttggtggtt ggactcctta tagggctaga aggtaaatat cttatgaaaa aatcattttt
      481 gccgatttat cttaataaat tttatttgca aggatggcaa aaatgattaa tggtataaat
      541 tcttattcaa actacaatta cacaaatact tttagtaata ctacttcaaa tacaaaatca
      601 tctaatgcta taaatgaagc ttcaaacctt gtaagtgata aatcacaagc agtagataaa
      661 attttaggct atggcgtaga taaagagggc ttttttacaa gtgattttaa cgaagcagca
      721 ggcttgccaa aagattataa gatttatgct aaggatatgc aaagctttgt agaatgggag
      781 acaggagata gatattttta tgcaactcac acttcaatag atattgcaaa aactatagga
      841 aatgcttata aagtgctttc tcaaattatg ccgacaactt caaatgctag tctttctgaa
      901 gaagaattaa caaatatacc ttatgctttt gttttagata aaaatcttaa tgttactaaa
      961 actttta
//
LOCUS       DARAII010000265          945 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.291, whole genome shotgun sequence.
ACCESSION   DARAII010000265 DARAII010000000
VERSION     DARAII010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.291"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(764..880)
                     /gene="rrf"
                     /locus_tag="SB143_002176"
     rRNA            complement(764..880)
                     /gene="rrf"
                     /locus_tag="SB143_002176"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          471 a          140 c           84 g          250 t
ORIGIN      
        1 tataaaataa acttgagtga ttaaaaatcc aacccaatta ttgaacaaac ccaagctaca
       61 taataaaata taaactagac atataaagaa caattgacac ataaaaatag attgaataaa
      121 taaacctata caagtaaaca taaagattaa ttattgatac aaaagattta ataaataaaa
      181 agaataattg agatataaaa acatataaac taaacaactc aaacaaccat taaatcaacc
      241 caaactaata aacaaccata gcttaagctg acaacccaac caatcaattt aaatataaaa
      301 ctacaaatta aatcaaccca agctaattaa acttcaaact aattaatcaa acaagccaat
      361 gaatataacc taactgatta aattaaataa attaataaac taatcaagca atgactaata
      421 aagtatttaa aaccaacaaa agcataaatc aattaaacta atgattgaat ataaaaataa
      481 taagttgtag ataagtaaaa gcattataca aagcattcta agctgattaa atacaattag
      541 aacaaaagca taaatcaatc caagccaatt aaacataaac ataaaaaaca atgaatacaa
      601 aaacatattt aattagcata aaaacaaatt caatcaataa aaaaataatt aatacaataa
      661 tagatttaat aaacataaaa aaataattaa atataaaaac aacgattgac atataaaaac
      721 taagatttta aatctataag aataagataa agaagaatta acaagtccgc aatgagctac
      781 tttccccctg ccagtaaggc gtagtatcat cacccacgat gtgcttagct tcttggttcg
      841 ggatggagca aggcgtttcc acatctgtat aatcacggac attgttattt aaatattctt
      901 tgaaagattt aacttaagaa taaagctttt attttttatt ctatt
//
LOCUS       DARAII010000266          917 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.294, whole genome shotgun sequence.
ACCESSION   DARAII010000266 DARAII010000000
VERSION     DARAII010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 917)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.294"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..243)
                     /locus_tag="SB143_002177"
     CDS             complement(<1..243)
                     /locus_tag="SB143_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001129922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TnpV protein"
                     /protein_id="HEF9750657.1"
                     /translation="MAKSLFEELGGKYERQGDYLIPCLTVPAEEEQAIGIWGQRHLDY
                     LKQYRKVTYTNLLTSGRLNAYLADINRQAQERFERLI"
     gene            676..837
                     /locus_tag="SB143_002178"
     CDS             676..837
                     /locus_tag="SB143_002178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004614779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750658.1"
                     /translation="MKKDMDKIQFEYRYEVQELMKVIDKYVKQNPAEKENKTLERFFD
                     LLDVMDMEW"
BASE COUNT          263 a          192 c          209 g          253 t
ORIGIN      
        1 tatgagcctt tcaaagcgtt cctgtgcctg tctgttgatg tcggcaaggt aggcgtttag
       61 cctgccgctt gtaagaagat tggtgtatgt aactttacgg tactgtttta gataatctaa
      121 atgccgttgc ccccagatgc ctattgcctg ttcttcttcg gcgggtacag ttaagcacgg
      181 tatcaaataa tccccttgcc tttcgtattt gccgcccagt tcctcaaata atgattttgc
      241 cattgtctgt tacctccaca ttctttttta ttttgaatgt ccgcaaaatc cgtcctacat
      301 tgtccgttcc ggcggaagaa agtaaagggt ggtctgcgac cattttttat ctgctgtact
      361 cgctgatcgg caagccgaag ctcatactgc agataaaaaa caagcccttg actgtctccc
      421 tcctacactt ccaaagtcgc ccaagaggaa gtaagctcca ctatattctt ggcagaatat
      481 acgcacgaat atatccgctt gatatagggt gtctatcatg ctataatatg tgtagcggat
      541 atattgcaag ttccctaaag tgttaccact ttagaacttg tgagggtggc aagcccccct
      601 tcaatccccc ttttaaacga gccggaaggc tcataatatg acggtggtag caccgaagaa
      661 agagaggtca aaggcatgaa aaaagatatg gataaaattc agtttgagta cagatacgag
      721 gtgcaggagc tgatgaaagt aattgataaa tatgtaaaac agaatccggc agaaaaggaa
      781 aataagacgc tggagcgttt ctttgaccta cttgatgtca tggatatgga gtggtaaggg
      841 tatgaacaag acaagaccaa agcagctatc attccgggta agtgaagaag aataccagca
      901 gctacaggag aagattt
//
LOCUS       DARAII010000267          892 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.296, whole genome shotgun sequence.
ACCESSION   DARAII010000267 DARAII010000000
VERSION     DARAII010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.296"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..478
                     /locus_tag="SB143_002179"
     CDS             <1..478
                     /locus_tag="SB143_002179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEF9750659.1"
                     /translation="YNDFGQIVEKPQLGVSPNGTSTLVKHQGLESFKYAIQESFQAST
                     LIIKGIIKLISGEVEAKNLGGIITMTEITSKAAQNSFTLLLFITALISINLGILNLLP
                     IPMLDGGHILFNLYEMIFRRKVPQRAFEYLSYAGMAILLSLMLFATYNDISRIAGE"
     gene            471..892
                     /locus_tag="SB143_002180"
                     /pseudo
     CDS             471..892
                     /locus_tag="SB143_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
BASE COUNT          310 a          137 c          135 g          310 t
ORIGIN      
        1 atataatgac tttggacaaa tcgttgaaaa acctcaactt ggagtcagtc caaatgggac
       61 aagcactctt gtaaaacatc aaggtttaga aagttttaaa tatgccatac aagaaagttt
      121 tcaagcttct acactcatca tcaagggtat aataaaactc ataagtggtg aagttgaagc
      181 aaaaaattta ggcggtatta tcaccatgac tgaaattacc tcaaaggctg cacaaaatag
      241 ctttactttg cttttattta tcactgcttt aatttctata aatttaggca ttttaaatct
      301 tttacctatt cctatgcttg atggaggaca tatacttttt aatctttatg aaatgatttt
      361 tagacgcaag gttccacagc gtgcttttga atacttaagt tacgcaggca tggcaatact
      421 tttaagctta atgctctttg caacttataa tgatatatca aggattgcag gtgaataaaa
      481 aattttccta ccctattcca aattttactg atagaagaaa aagtatcatc ttttggcgct
      541 atttacgttt tcaagcaaga aaaattctat attttcctca agtaaggctt ctagaaaaaa
      601 cgcttaatga agaaaaaaat aaacatttaa aagacttttt ctctcaaaga ccctatgctt
      661 ggctacaatg ctataagaag attttgcgat aaaagtttta aagcaaatga acgcgttaaa
      721 acacttattt atgatgttga taagggactt acttgtttta aatttcttcc cgaagaacaa
      781 atgatttttt cttttgatga agattttgag ctttttttag gatataacca taatgtttac
      841 gaagaaggtt tttgggcttt ttctttaaaa tttaaaaaat acactatttc ac
//
LOCUS       DARAII010000268          892 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.297, whole genome shotgun sequence.
ACCESSION   DARAII010000268 DARAII010000000
VERSION     DARAII010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.297"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..391)
                     /locus_tag="SB143_002181"
     CDS             complement(<1..391)
                     /locus_tag="SB143_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750660.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKAD"
     gene            complement(405..>892)
                     /locus_tag="SB143_002182"
     CDS             complement(405..>892)
                     /locus_tag="SB143_002182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002911952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750661.1"
                     /translation="VKGGYITYLKRLSDNEVIAFAKPDWNLELTLFQDSNGDQYYWNR
                     EGLVRFGGMCGIDTTNCLVNGKHTYTNQQRLWETMSIVGDDPYRNFLGYTVKRNIGIS
                     NLGKRFVYFSYGVAVINEQSGSWYRVKSSPVLNNYRVVKEISSNYKDFLERYLGGYSI
                     K"
BASE COUNT          278 a          162 c          113 g          339 t
ORIGIN      
        1 catcggcttt tttgatgatg tcgtagccca aatgaaacat cttagaataa gaaacaaaaa
       61 aacctaacat cattttctca gtagttgggt cccattttgt ataagcagga ttaaaatctt
      121 ttaaagggga tttttctatt ttattggggt cttttaaagc atttgacttc ataaagttgt
      181 taaattcttg catatctttt ttgctaatac tttcatcaag tccgaatatt ttaggattat
      241 actcaaattt ttttccacga taaggcaaag caccttctcc tgttataacg gctactccgt
      301 gtttgttgat tttaaaatca atatttttat cttgtttaaa atttgaagtg ttataatcat
      361 agtttaaatt tgagtttaga ctatttatca ttagtttttc ctctttactt gatagaatac
      421 ccaccaagat atctttctaa aaagtcttta tagtttgaac tgatttcctt aactactctg
      481 taattattca aaacaggact tgattttact ctataccaag aacctgattg ttcgttgatt
      541 acagccactc cataagaaaa atacacaaat cttttcccta aattagaaat accaatattt
      601 cttttcacag tatatccaag aaagttacga taagggtcat cgcccactat actcatagtt
      661 tcccaaagtc tttgttgatt tgtgtatgta tgttttccat taactaagca atttgtggta
      721 tctataccgc acattccacc aaatcgaaca agtccttctc tattccaata atattgatct
      781 ccgttactat cttgaaataa agttaattcc aaattccaat caggtttggc aaaggctata
      841 acttcattat cactaagtcg ttttaaatag gttatatacc caccctttac tt
//
LOCUS       DARAII010000269          890 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.298, whole genome shotgun sequence.
ACCESSION   DARAII010000269 DARAII010000000
VERSION     DARAII010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.298"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..643
                     /locus_tag="SB143_002183"
     rRNA            <1..643
                     /locus_tag="SB143_002183"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          288 a          152 c          219 g          231 t
ORIGIN      
        1 ttgactgggg cggtcgcctc ccaaataata acggaggctt acaaaggttg gctcagaacg
       61 gttggaaatc gttcgtagag tataaaggta taagccagct taactgcaag acatacaagt
      121 caagcagaga cgaaagtcgg tcttagtgat ccggtggttc tgtgtggaag ggccatcgct
      181 caaaggataa aaggtacccc ggggataaca ggctgatctc ccccaagagc tcacatcgac
      241 ggggaggttt ggcacctcga tgtcggctca tcgcatcctg gggctggagc aggtcccaag
      301 ggtatggctg ttcgccattt aaagcggtac gcgagctggg ttcagaacgt cgtgagacag
      361 ttcggtccct atctgccgtg ggcgtaagaa gattgaagag atttgaccct agtacgagag
      421 gaccgggttg aacaaaccac tggtgtagct gttgttctgc caagagcatc gcagcgtagc
      481 taagtttgga aaggataaac gctgaaagca tctaagcgtg aagccaactc taagatgaat
      541 cttctctaag ctctctagaa gactactagt ttgataggct gggtgtgtaa tggatgaaag
      601 tcctttagct gaccagtact aatagagcgt ttggcttatc tttaataaag catcacttcc
      661 ttgttaaggt ttttaagaag actttgaata tagataatat ttagagttta atagaaatct
      721 ttcaagtaga gtttgtatta gaacttgctc ttaacattgt tttttaagta ttctaaaata
      781 aaaacttatc aaagagagta aagatttgat tcattgataa gatgaaagat aagatttaaa
      841 agataaaagt aaaaattaaa aaacaaaaaa agaaaaataa aaaagaatag
//
LOCUS       DARAII010000270          878 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.299, whole genome shotgun sequence.
ACCESSION   DARAII010000270 DARAII010000000
VERSION     DARAII010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 878)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.299"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>878)
                     /locus_tag="SB143_002184"
     CDS             complement(<1..>878)
                     /locus_tag="SB143_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEF9750662.1"
                     /translation="LSLLGGLLVFMFFVQGGQTLIDELSSDELEKTMLVNSLGRKWEL
                     GFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQAVAYEYRKKENNVYGSK
                     TYEVFLKINGYLGVFLIGVAISSFFSGSHFVLNEHNFVSWQNSLRGLELLFNPFNYLL
                     GIALVFLSRILGAAYFMNNIKDENIKAKAVRKLSINSILFLPFFLGFLAWIFIKEGFG
                     VDEKGIVSMTENVYLYNFLDNILFAILFIVGVVFVLLGMVQGSKGCSKTIFTLGFGSV
                     LAVFALFLSIGLGSSA"
BASE COUNT          378 a          184 c           97 g          219 t
ORIGIN      
        1 aaagcgcttg atccaagtcc tatgcttaaa aataaagcaa aaacagccaa aaccgatcca
       61 aaacctaaag taaaaatcgt tttagaacat ccttttgaac cttgtaccat acccaaaagc
      121 acaaatacaa ctccaacgat aaataaaata gcaaaaagaa tattatctaa aaaattgtat
      181 aaatatacat tttcagtcat actcacaatg cccttttcgt ccactccaaa accctctttg
      241 ataaaaatcc acgcaagaaa tcctaagaaa aaaggcaaaa ataaaatact gtttatactc
      301 agttttctaa cagcttttgc tttgatattt tcatctttga tattattcat aaaataagca
      361 gcacccaaaa ttctagataa aaacaccaaa gcaataccca aaagataatt aaaaggatta
      421 aacaaaagtt ccaaaccgcg taaagaattt tgccaagaaa caaaattatg ctcatttaat
      481 acaaaatgcg atccactaaa aaaactgctt attgcaaccc cgattaaaaa cactcctaaa
      541 taaccattga ttttaagaaa aacttcatag gttttagaac catagacatt gttttctttt
      601 ttacgatact cataagcaac ggcttgtaaa ataaagcaaa ataaaataca aagccaagcc
      661 caataagccc caccaaaact tgtgctataa aaaagcggaa aagcagcaaa agcagcaccg
      721 ccaaaaagca caagagtagt aaaaccaagc tcccatttac gacctagtga gtttacaagc
      781 attgtttttt caagttcgtc agaacttaat tcatcaatta aagtttgacc cccttgaaca
      841 aaaaacataa aaaccaaaag tccgcctaat aaacttaa
//
LOCUS       DARAII010000271          869 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.301, whole genome shotgun sequence.
ACCESSION   DARAII010000271 DARAII010000000
VERSION     DARAII010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.301"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>869
                     /locus_tag="SB143_002185"
     CDS             <1..>869
                     /locus_tag="SB143_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEF9750663.1"
                     /translation="QGLEQDAKAVKESVETVGVVESGNLTARITANPRNPQLIELKNV
                     LNRLLDVLQTKVGSDMNAIHKIFEEYKSLDFRNKLDNANGSVEVTTNALGDEIIKMLK
                     QSSDFANHLASESSKLQSAVQNLTSSSNSQAASLEETAAALEEITSSMQNVSVKTSDV
                     ITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQK
                     SLSEIEANTNLLVQSINDMAESIKEQTAGITQINESVAQIDQTTKDNVEIANESAIIS
                     STVSDIANNILEDV"
BASE COUNT          324 a          116 c          161 g          268 t
ORIGIN      
        1 caaggtttag aacaagatgc taaagcagta aaagaaagtg ttgaaactgt aggagtagta
       61 gaaagtggta atcttactgc aagaattaca gctaatccta gaaatccaca attaatagaa
      121 cttaaaaatg ttctaaatag acttttagat gttttacaaa ctaaagtagg atcagatatg
      181 aatgctattc ataagatctt tgaagaatat aagtctttag actttagaaa taaacttgat
      241 aatgctaatg gtagtgttga agttactact aatgctttag gggatgaaat tattaagatg
      301 ttaaaacaaa gttctgactt tgctaatcat ttagccagtg aaagttctaa acttcaaagt
      361 gcagttcaaa accttacttc atcttctaat tctcaagcag cttctttaga agaaactgca
      421 gctgctttag aagagattac ttcttctatg caaaatgttt cagttaaaac tagtgatgtt
      481 atcactcaat ctgaagagat taaaaatgtt acaggtatta ttggagatat tgcagatcaa
      541 atcaatcttc tagcattaaa tgctgctatt gaagctgcaa gagcaggaga acatggtaga
      601 ggctttgcag tggtagctga tgaagttaga aagttagctg agagaactca aaagtcttta
      661 tctgaaatag aagctaatac taatttattg gttcaatcta tcaatgatat ggcagaatct
      721 attaaagagc aaactgcagg tattactcaa atcaatgaga gtgtagctca aattgatcaa
      781 accactaagg ataatgtaga gattgctaat gaatcagcta ttatttctag tacagtaagt
      841 gatatagcta ataacatact tgaagatgt
//
LOCUS       DARAII010000272          866 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.302, whole genome shotgun sequence.
ACCESSION   DARAII010000272 DARAII010000000
VERSION     DARAII010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 866)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.302"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            407..838
                     /locus_tag="SB143_002186"
     CDS             407..838
                     /locus_tag="SB143_002186"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750664.1"
                     /translation="MKINKIIWTCINCQKTNDTSLGSLKSLEKAEQILTSFNEEVILL
                     VKCKKCKKNNELLMKFKIIGLSQFQDENKSKRTLNMVKINKERAKNKKEKIFSLLSGL
                     FSDSYKDEKGNFDIEKIALHAKVNIKTAKKYILEYEKENKK"
BASE COUNT          346 a           66 c          132 g          322 t
ORIGIN      
        1 tacagagtta ttttttatat ttatgtatta tagtttcaat ctgcattttt aaaagcgaaa
       61 tttggagctt tataaaaaat gttttgaaag agttgttttt aacatttgta gaaagtgtta
      121 attatattgg cgaagataat ttagtttttg tttcaaattt tatcatttta tgctttattc
      181 ttaagattgt atgttggttt tatggaactt atcaagtctt aagggtttca ttatatttaa
      241 ttcctttatt tatagctata ttatatattt ttggtattga attaagcttg gatagtttta
      301 attcttactt tcttatattt attgttattt taaatgggct tttatgggct tataatcagg
      361 agctaaaatg aacttattaa agttcatttt ataggattaa ataccgatga aaatcaataa
      421 aataatttgg acttgtatta attgtcaaaa aactaatgat acaagcttag gaagtttaaa
      481 aagtttagaa aaagcagagc aaatattgac ttcttttaat gaagaagtaa tcttgcttgt
      541 aaaatgtaaa aaatgtaaga aaaataatga attgcttatg aaatttaaaa taataggatt
      601 aagtcagttc caagatgaaa ataagagtaa aagaacactt aatatggtta aaattaacaa
      661 agaaagagcc aagaataaaa aggagaaaat tttttccctt ttaagcggat tattttcaga
      721 tagttataaa gatgaaaaag gaaattttga tatagaaaaa atagctttac acgcaaaagt
      781 aaatataaaa actgcaaaaa aatatatttt agagtatgaa aaggagaata aaaaataatg
      841 cgtttagata cagaatttaa cggaaa
//
LOCUS       DARAII010000273          861 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.303, whole genome shotgun sequence.
ACCESSION   DARAII010000273 DARAII010000000
VERSION     DARAII010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.303"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>861
                     /locus_tag="SB143_002187"
     CDS             <1..>861
                     /locus_tag="SB143_002187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="The UvrABC repair system catalyzes the recognition
                     and processing of DNA lesions. The beta-hairpin of the
                     Uvr-B subunit is inserted between the strands, where it
                     probes for the presence of a lesion; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit B"
                     /protein_id="HEF9750665.1"
                     /translation="KFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNR
                     PLMFDEFIHKNCQFLFVSATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVE
                     ILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRG
                     LRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGK
                     VLLFCKKITKSMQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEENLGEIY
                     RKGKKIEKMPA"
BASE COUNT          314 a          130 c          162 g          255 t
ORIGIN      
        1 aaatttcttg tcatagtcga tgaaagccat gtatctttac cgcaatttag aggtatgttt
       61 gcaggagata gaagtagaaa acaaaccttg gtggattatg gttttcgttt gccttcagcc
      121 ttggataatc gtcctttaat gtttgatgaa tttatccata aaaattgtca atttcttttt
      181 gtttcagcta cacctgcacc tttagaactt gaactgagta aagaaaacat ctttcatcaa
      241 atcatgcgtc ctacgggact acttgatcct ttaatagaat taaaagatag tgataatcag
      301 gttgaaattt tatttgatga ggctaaaaaa gtcatacaaa gaaacgaacg ggttttagta
      361 actgtactga ctaaaaaact cgctgaagag cttacaaggt attatttaga gcttggtatt
      421 aaagtaaaat acatgcactc agatatcgat gctatagaac gcaatgaaat cataagaggt
      481 ttaagaagcg gtgcttttga tatgctaata ggtataaatt tacttagaga aggacttgat
      541 ttgcctgaag tttcactcat tgccattatg gatgcagata aggagggttt tttaagaagc
      601 acaacaagtt taatccaaac catgggaaga gcagctagaa atgtcaatgg taaggttttg
      661 cttttttgca aaaagattac aaaatctatg caagaagcta tggatactac caatgaacgc
      721 cgcaaacttc aaatggctta taataaaaaa tacaatatca cgccaacttc agtcaagcga
      781 cacatcgaag aaagtttaaa aaatgaagaa aacttaggag aaatttatcg caaaggtaaa
      841 aaaattgaaa aaatgcctgc t
//
LOCUS       DARAII010000274          861 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.304, whole genome shotgun sequence.
ACCESSION   DARAII010000274 DARAII010000000
VERSION     DARAII010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.304"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..500)
                     /locus_tag="SB143_002188"
     CDS             complement(<1..500)
                     /locus_tag="SB143_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEF9750666.1"
                     /translation="MDTLKIAKEVFATEAKAIEDLALNLDENFSKAIELMLHTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPDDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIAMCGKKNSTLVKQGDIFLNISVKEEACPLQLAPMSSTTATLV
                     MGDALAA"
     gene            complement(510..>861)
                     /locus_tag="SB143_002189"
     CDS             complement(510..>861)
                     /locus_tag="SB143_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HEF9750667.1"
                     /translation="EVILEEGDIINVPSKNNLIIVQGEVTLPGAFVYNKGENLKYYIN
                     LAGGYGERADTSKVLVIRNNGKAQRYSGSVDMMPGDSVLVLPKVESENLQIFSMLTQI
                     LYQIAVATNVVLNI"
BASE COUNT          263 a          191 c          134 g          273 t
ORIGIN      
        1 gctgctaaag catcgcccat taccaaagta gcagttgtcg aagacatcgg agcaagttgc
       61 aaggggcatg cttcttcttt tacagatata tttaaaaaaa tatccccttg ttttacaaga
      121 gtagagtttt tctttccaca catggctata agagggattt tgcgtttttt aatcgcaggg
      181 atgattttta aaatctcttc agtctcgcct gaatttgaaa tagcgatcaa aacatcatca
      241 ggagtaagca tcccaagatc cccatgcaaa gcctctccag gatggataaa aaagcttgga
      301 gttcctgtgc ttgctaaagt cgcagctatc ttagctccta tatggcctga ttttcccatg
      361 ccactgacta tacaacgccc ctttgtatgg agcataagtt ctatggcttt agaaaaattt
      421 tcatccaaat ttaaagccaa atcctctata gccttagcct ctgtcgcaaa aacttcttta
      481 gctatcttta aagtatccat aatcacacct tagatattta atactacatt cgttgcaacg
      541 gcaatttgat ataaaatttg cgttagcata gaaaaaattt gcaaattctc actctcaacc
      601 ttaggcaaaa ctaagacaga atcacctggc atcatatcaa cacttccact atatctttga
      661 gccttgccat tgttgcgtat aacaagcact ttagaagtgt ccgctctttc tccataacct
      721 cctgcaagat tgatatagta ttttaaattt tcacccttat tataaacaaa agctcctggt
      781 aaagtaacct caccttggac tatgataaga ttgtttttac tagggacatt gataatatca
      841 ccctcttcta gtataacctc t
//
LOCUS       DARAII010000275          860 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.305, whole genome shotgun sequence.
ACCESSION   DARAII010000275 DARAII010000000
VERSION     DARAII010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 860)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.305"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..163
                     /locus_tag="SB143_002190"
     CDS             <1..163
                     /locus_tag="SB143_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="malonyl CoA-acyl carrier protein transacylase"
                     /protein_id="HEF9750668.1"
                     /translation="VLYKQSIKACENEADCFIEFGASVLKGLNKKITSKETYALTNMN
                     DIEEFLKVI"
     gene            164..850
                     /gene="pfs"
                     /locus_tag="SB143_002191"
     CDS             164..850
                     /gene="pfs"
                     /locus_tag="SB143_002191"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEF9750669.1"
                     /translation="MKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFANYKNHELI
                     LAYSKIGKVNSTLSASVMIEKFGAQVLLFTGVAGAFNPELEIGDLLYATKLAQYDLDI
                     TAFGHPLGFVPGNEIFIKTDDKLNNLALEVAKELNIKLCAGIIATGDEFICDEAKKAK
                     IREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKISA
                     NFVLKMCEKL"
BASE COUNT          303 a          103 c          174 g          280 t
ORIGIN      
        1 tgtgctttat aaacaaagca ttaaggcttg tgaaaatgaa gcagattgtt ttatagaatt
       61 tggcgctagt gtgcttaaag gtttgaataa aaaaatcact tcaaaagaaa cttatgcttt
      121 aacaaatatg aatgatatag aagaattttt aaaggtaata taaatgaaaa tagcaatttt
      181 aggtgcaatg agtgaagaaa tcactccttt gcttgaaaca cttaaagatt atacaaaaat
      241 agaacacgct aataatactt attattttgc aaactataaa aatcatgagc ttattcttgc
      301 ttattctaag ataggcaagg taaattctac cctaagtgct agtgtgatga tagaaaaatt
      361 tggcgcgcaa gttttacttt ttacaggtgt tgcaggagcg tttaatcctg agcttgagat
      421 tggtgacttg ctttatgcga cgaaattagc acaatatgat cttgatatca ctgcttttgg
      481 acatccattg ggttttgttc caggaaatga aatttttata aagacagacg ataaattaaa
      541 caatcttgct ttagaagtcg caaaagaatt aaatatcaaa ctttgtgcag gtattatcgc
      601 aacgggtgat gaatttattt gtgatgaggc aaagaaagca aaaatcagag agatttttaa
      661 tgctgatgct tgcgaaatgg aaggagcaag tgtggcttta gtgtgcgatg ctttaaaagt
      721 gccttgtttt attttaagag cgatgagtga taaagccggc gaaaaggcag aatttgattt
      781 tgatgaattt gtgatcaatt cagctaaaat ttcggctaat tttgtactta aaatgtgtga
      841 gaaattatga taaatcttag
//
LOCUS       DARAII010000276          849 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.308, whole genome shotgun sequence.
ACCESSION   DARAII010000276 DARAII010000000
VERSION     DARAII010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.308"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>849)
                     /locus_tag="SB143_002192"
     CDS             complement(<1..>849)
                     /locus_tag="SB143_002192"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Catalyzes the rate-limiting step in dNTP synthesis;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEF9750670.1"
                     /translation="GISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNG
                     MNRYNHLCEYFEKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYL
                     IKDSKGMPIELPQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNART
                     TRHQLSSCYIGSTPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAA
                     GGIIPFLKITNDIAVAVDQLGTRKGAIAVYIEPWHMDVSDFIDLRKNSGEERRRAHEL
                     FPALWI"
BASE COUNT          279 a          172 c          120 g          278 t
ORIGIN      
        1 ttgatccata aagcagggaa aagttcatga gcacggcgtc tttcttcacc tgaattttta
       61 cgcaaatcga taaaatcact tacatccata tgccaaggtt cgatataaac agcgatcgca
      121 ccctttcttg tgccaagctg atctacagcc acagctatat cattggtgat ttttaaaaaa
      181 ggaatgatac cccctgcggc atttttatgc ccatctatgc ttccacccat agcacgcact
      241 ttagaccaat cccaacctat acctccacca aatttagaca ataatgccat ttcttggtaa
      301 gaatcaaaaa ttccctcgat attgtcaggg gttgatccta tataacaaga gctaagctga
      361 tggcgtgttg ttcttgcatt agataaagtc ggagttgcaa gcatgagttc aaatttagag
      421 atgagatcat aaaatttctt tgcccattct tgaggattaa attcattctg cgctaaaaac
      481 atcgcaatgg ccataaacat ttgctgagga agttctatag gcataccttt actatcttta
      541 atcaagtatc tatcatataa agttttaata ccaagataag taaactgcat atcgcgttca
      601 ggtttaatat aagcatttaa atcatctaaa tcatattttt ctttaagacc aagtaaaatt
      661 cttccttctt tttcaccttt ttcaaaatac tcacacaaat gattatagcg attcatacca
      721 ttaacttttt tatataaatc aaataaaaaa agtctagctg caacaaaggt ccaatttgga
      781 caatcaatat ctatcttatc tactgcagtt ttaattaaag ttttttgaat ttcttcagtt
      841 gaaattcca
//
LOCUS       DARAII010000277          847 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.309, whole genome shotgun sequence.
ACCESSION   DARAII010000277 DARAII010000000
VERSION     DARAII010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.309"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..399
                     /locus_tag="SB143_002193"
     CDS             <1..399
                     /locus_tag="SB143_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEF9750671.1"
                     /translation="LCQKYIKRVKTVKTGKVFVDNQINKQIADDVVIDRQKLADSGIV
                     VIIAQLDKASKTLINKPRVFSYGLVADKQDHAFSKEMSEVLGQFFVNVKDEVLNDPRF
                     LENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            441..>847
                     /locus_tag="SB143_002194"
     CDS             441..>847
                     /locus_tag="SB143_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEF9750672.1"
                     /translation="MRINKFISHNSSYSRREADELIKQGLVKINNKIALLSDEVKTND
                     KVFVKGKALRKKTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDF
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKG"
BASE COUNT          319 a          128 c          154 g          246 t
ORIGIN      
        1 ctttgtcaaa aatatatcaa acgcgtgaaa accgttaaaa caggcaaggt ttttgtggat
       61 aatcaaatca ataaacaaat cgccgatgat gtagtaattg atcgtcaaaa acttgcagat
      121 agcggtatag ttgtcatcat cgcacagctt gataaagcaa gtaaaacatt gattaataaa
      181 ccaagagtat ttagctatgg acttgtagca gataaacaag atcatgcttt ttctaaagaa
      241 atgtcagagg ttttaggaca attttttgtc aatgttaaag atgaagtgct taatgatcca
      301 agatttttgg aaaatcaaat tcgtcaagta ttgagaaaac atatttttag aaagattaaa
      361 aaatatccaa ccatagttcc aactattttt gtaatgtaaa atagggcgtt tttcgccctt
      421 aaattttcat aggaattcaa atgagaatca ataaattcat atcacacaat agctcttatt
      481 cacgccgcga agctgatgag cttatcaagc aaggtttggt aaaaataaac aacaaaatag
      541 cccttttaag cgacgaagta aagacaaacg ataaagtctt tgttaagggt aaagctttgc
      601 gtaaaaaaac gcaatttagc gtgataatct accataaaca aaaaggtgaa attgtcagta
      661 aaaaagacga tcgtggaaga aaaactatat atgatacctt gccaagacaa tttagtactt
      721 ggcttagcgt aggaaggctt gactttgcta gcgaaggctt acttttgctt acagattctc
      781 ctgtgattgc cgatgcttta atgcatagcg atttagaaag agaatactac cttaaagtta
      841 aaggcat
//
LOCUS       DARAII010000278          840 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.310, whole genome shotgun sequence.
ACCESSION   DARAII010000278 DARAII010000000
VERSION     DARAII010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 840)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.310"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            76..>840
                     /locus_tag="SB143_002195"
     CDS             76..>840
                     /locus_tag="SB143_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750673.1"
                     /translation="MADTIKQYYNQFNQIVNHTFNDTNKTSFTEADINSMPKGYISVG
                     YKGLDFSDQSNPYNALGLVNHSNTKVTNVFKTDDEFHEAQAIQMGMMGIDFYPQKLNI
                     STQSLSQGALMEGGFNPDMSVYPQNEDGSYSKEALFMSFLKSEGGYMVAGKNTTIAPQ
                     AMNYNLNVAKQSIPKYSNVDFDDIMTGKVDFASLLKGYAQDGWLDAGIYAMEKGVKWQ
                     NIYVGSGISFDREFHQAKANGWKASNESINSFVNNIM"
BASE COUNT          322 a          105 c          143 g          270 t
ORIGIN      
        1 tataacttta atgaagcaca atatcaagat ataaaagaac agctaggaat ttctcgctat
       61 tttaccaata tagatatggc tgataccata aaacaatact ataatcaatt taatcaaatt
      121 gttaatcata cttttaatga taccaataaa acaagtttca ctgaagcaga tataaattct
      181 atgcccaagg gttatatttc tgttggctat aaaggtttag atttttcaga tcaatccaat
      241 ccttataatg cattaggact agttaatcat tctaacacaa aagtaactaa tgtttttaaa
      301 acagatgatg aatttcatga agctcaagca atacaaatgg gaatgatggg tattgatttt
      361 tatccgcaaa aattaaatat atcaactcaa agtttatcac aaggagcttt aatggaaggt
      421 ggatttaatc ctgatatgtc agtttatcca caaaatgaag atggaagtta ttctaaagaa
      481 gctttgttta tgagcttttt aaaatcagaa ggtggttata tggttgcagg aaaaaataca
      541 actattgcac cgcaagcaat gaattataat cttaatgttg ctaaacaaag tattccaaaa
      601 tactctaatg tagatttcga tgacattatg acaggtaagg ttgattttgc aagtttatta
      661 aaaggttatg cacaagatgg ttggcttgat gcaggtattt atgcaatgga aaaaggagtt
      721 aaatggcaaa atatatacgt aggcagtgga atctcttttg atagagaatt tcatcaagca
      781 aaagctaatg gttggaaagc aagtaatgaa agtataaatt cttttgtaaa taatataatg
//
LOCUS       DARAII010000279          834 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.311, whole genome shotgun sequence.
ACCESSION   DARAII010000279 DARAII010000000
VERSION     DARAII010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.311"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>834
                     /locus_tag="SB143_002196"
     rRNA            <1..>834
                     /locus_tag="SB143_002196"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          243 a          161 c          233 g          197 t
ORIGIN      
        1 cgaaggtata ccggtaagga gtgctggagc gaatagaagt gagcatgcag gcatgagtag
       61 cgataattaa tgtgagaatc attaacgccg taaacccaag gtttcctacg cgatgctcgt
      121 catcgtaggg ttagtcgggt cctaagtcga gtccgaaagg ggtagacgat ggcaaattgg
      181 ttaatattcc aataccaaca ttagtgtgcg atggaaggac gcttagggct aagggggcta
      241 gcggatggaa gtgctagtct aaggtcgtag gaggttatac aggcaaatcc gtataacaat
      301 actccgagaa ctgaaaggct ttttgaagtc ttcggatgga tagaagaacc cctgatgcca
      361 tcgagccaag aaaagtttct aagtttagct aatgttgccc gtaccgtaaa ccgacacagg
      421 tgggtgggat gagtattcta aggcgcgtgg aagaactctc tttaaggaac tctgcaaaat
      481 agcaccgtat cttcggtata aggtgtggtt cgcttcgtat taggatttac tccgaaagcg
      541 aagaaactta caacaaagag tccctcccga ctgtttacca aaaacacagc actctgctaa
      601 ctcgtaagag gatgtatagg gtgtgacgcc tgcccggtgc tcgaaggtta attgatgggg
      661 ttagcattag cgaagctctt gatcgaagcc cgagtaaacg gcggccgtaa ctataacggt
      721 cctaaggtag cgaaattcct tgtcggttaa ataccgacct gcatgaatgg cgtaacgaga
      781 tgggagctgt ctcaaagagg gatccagtga aattgtagtg gaggtgaaaa ttcc
//
LOCUS       DARAII010000280          824 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.312, whole genome shotgun sequence.
ACCESSION   DARAII010000280 DARAII010000000
VERSION     DARAII010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 824)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.312"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            10..>824
                     /gene="nspC"
                     /locus_tag="SB143_002197"
     CDS             10..>824
                     /gene="nspC"
                     /locus_tag="SB143_002197"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEF9750674.1"
                     /translation="MINTKFQTPAYILEEDKLRRNCEILANVGEKSGAKVLLALKGFA
                     FSGAMKVVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEMSEIAHLSHHIVF
                     NSLYQFDKFKSLCANNSLGLRCNLEFSFAPKELYNPCGKYSRLGILSKDLENFDLSGV
                     EGLHFHALCEESADALEAVLKVFEEKFGKWIKQMKWVNFGGGHHITKQGYDIQKIITL
                     CKNFSDKYGVQVYLEPGEAVGWQSGVLVASVVDIVENEKRIAILDTSSEAHMP"
BASE COUNT          268 a          104 c          187 g          265 t
ORIGIN      
        1 aggaagaata tgataaatac caaatttcaa actccagctt atattttgga ggaagataaa
       61 ttaagaagaa attgtgaaat tttagcaaat gttggtgaaa aaagcggagc taaagtgctt
      121 ttagctctaa aaggttttgc tttttcagga gcgatgaagg ttgtaggtga gtatcttaaa
      181 ggctgtactt gtagcgggct ttgggaagca aaatttgcta aagaatatat ggataaagaa
      241 attcatactt attcgcctgc ctttaaagaa gacgaaatga gtgagattgc ccatttgtct
      301 catcatattg tttttaattc tttgtatcaa tttgataaat ttaaatcctt gtgtgctaat
      361 aactccttag gacttcgttg caatttagaa ttttcttttg ctcctaaaga gctttataat
      421 ccttgcggga aatactctag actagggatt ttgagcaagg atttagaaaa ttttgattta
      481 agcggagtag aaggacttca ttttcatgca ctttgtgaag agagtgcaga tgctttagaa
      541 gctgttttaa aggtttttga agagaaattt ggcaaatgga tcaaacagat gaaatgggtc
      601 aattttggcg gaggtcatca tatcacaaaa cagggctacg atatccaaaa aatcatcact
      661 ctttgtaaga attttagtga taaatatggc gtgcaagttt atcttgagcc aggagaagct
      721 gtgggttggc aaagtggggt tttggtagcg agcgtagtgg atatagttga aaatgagaaa
      781 agaattgcta ttttagacac ttcaagtgaa gctcatatgc ctga
//
LOCUS       DARAII010000281          816 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.313, whole genome shotgun sequence.
ACCESSION   DARAII010000281 DARAII010000000
VERSION     DARAII010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.313"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..252
                     /locus_tag="SB143_002198"
     CDS             <1..252
                     /locus_tag="SB143_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEF9750675.1"
                     /translation="VIGGLVCASILGTLIGIFVYSFWLSLLCSFFVAIFAVIGDLLES
                     YFKREAGVKDSGDLIPGHGGVLDRIDAVIIAAFVMVALL"
     gene            249..>816
                     /locus_tag="SB143_002199"
     CDS             249..>816
                     /locus_tag="SB143_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEF9750676.1"
                     /translation="MILFGSTGSIGLNALKLATLKNIKISALACGENISLLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KHKIKDLSHVSVKDALKHPNWNMGSKITI"
BASE COUNT          253 a          107 c          184 g          272 t
ORIGIN      
        1 gtgataggtg gtcttgtttg tgcgagtatt ttgggcactt tgataggaat ttttgtttat
       61 agtttttggc tttctttgct ttgttcgttt tttgtagcga tttttgcagt gattggagat
      121 ttgcttgaga gttattttaa aagagaagca ggtgtaaaag atagtggaga tcttatccct
      181 ggtcatgggg gcgtgctcga taggatcgat gcggtgatca ttgctgcttt tgtgatggtt
      241 gctcttttat gatacttttt ggaagtacgg gcagtatagg gcttaatgcc ctaaaacttg
      301 ccactttaaa aaatatcaag atttctgctc ttgcttgcgg ggaaaatata agtcttttaa
      361 atgagcaaat cgcaaggttt aaacccaaat ttgttgccat aaaagattca aaaaataagc
      421 atttagttaa acacgataga gtttttatag ggcaagaagg tttagagcaa attttaacag
      481 aatgtcaaga taagctttta ctcaatgcca ttgtaggttt tgcaggactt aaaagcactt
      541 taaaggctaa agagcttggc aaaaacatag ctttagctaa caaagaaagt cttgtagtag
      601 ctgggagttt tttgaaaggg gctaaatttt tacccgttga tagtgagcat gcagctttaa
      661 aatttttact cgaaggtaaa aaaaatatag caaaacttta tatcacagca agtggcggag
      721 ctttttataa acacaaaatt aaagatttaa gtcatgtgag tgtcaaagat gctctaaagc
      781 atccaaattg gaatatgggt tcaaagatca cgatag
//
LOCUS       DARAII010000282          811 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.314, whole genome shotgun sequence.
ACCESSION   DARAII010000282 DARAII010000000
VERSION     DARAII010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.314"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            8..691
                     /locus_tag="SB143_002200"
                     /pseudo
     CDS             8..691
                     /locus_tag="SB143_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011115043.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          314 a           77 c          148 g          272 t
ORIGIN      
        1 gataaaaatg gcgattggta aagtaattca taaatacggc tcattttttc ctgattttga
       61 tgagatattt tataaaataa aatatgagat ttatcgtggt gattgggaaa tgctcttttt
      121 tctacaaatt ccaaatatta aaaaaaccga tattttagaa tattttgaag atcatttttt
      181 aggatcaact ctgcaagatg ggtgcgaatt taatgataca tgttttcctt tgttttttac
      241 agaagatgaa aacttaaaaa actccataaa accgaattac aatagcgagt atgtaagcat
      301 tataggacaa cttttcctag caggttatat agaatttggt atgtgtggtt tgtaaaataa
      361 ggaggaaaat ttactttcca atcaaggtga taaataccaa gcttggattt attttagaga
      421 taatttcttt tatacagaag cttattgtag ggatataatg gaagttaaag aaccctataa
      481 agatatgagt gatgatgatt atgtttattc ttcttggaat acgccacaat attgggatag
      541 atatagattt tgggtagcaa gaacagagaa aggcacgaaa tatctccgtg aaattttaga
      601 acctagaatt tataacaaat acaaagattt agaagtagaa attgatgata aaggtagtgt
      661 gcttaggtgg attggagaga ttaatagatg aatctaaaaa ttttagaatc aaaaacaaaa
      721 attcacaatt tgagagattt aagatgaaat ataaagtatt aaataaagag tatatgaatt
      781 tttattttta cgagttaggt aaaaaaataa g
//
LOCUS       DARAII010000283          793 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.315, whole genome shotgun sequence.
ACCESSION   DARAII010000283 DARAII010000000
VERSION     DARAII010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 793)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.315"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>793
                     /locus_tag="SB143_002201"
     CDS             <1..>793
                     /locus_tag="SB143_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEF9750677.1"
                     /translation="LNNQINKQIPIQEKDEITEQDNSFSKEQISQEPSQEITRQKAIL
                     AKEIELNKALLREIEQGEMEKPKDFELPPLEFLTNPSHNKQEINESEIDKKIYNLLEK
                     LRRFKIGGDVISTYIGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAKSIRIQAPIP
                     GKDVVGIEVPNDEIQTIYLREILESEVFKNAKSPLTIALGKDIVGNAFVTDLKKLPHL
                     LIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIY"
BASE COUNT          305 a          127 c          143 g          218 t
ORIGIN      
        1 ctttaaataa tcaaataaat aaacaaatcc caattcaaga gaaagatgaa atcacagagc
       61 aagacaatag ctttagcaag gagcaaattt cacaagaacc aagccaagaa atcactaggc
      121 aaaaagcaat tttagctaaa gaaatcgagc ttaacaaagc tttacttagg gaaatagagc
      181 agggcgaaat ggaaaaacct aaagattttg agcttccacc gcttgagttt ctaacaaacc
      241 ctagtcacaa caagcaagag attaatgaaa gtgaaattga taaaaaaatc tataatttac
      301 ttgaaaaatt gcgtcgtttt aaaatagggg gcgatgttat cagcacttac ataggacctg
      361 ttgtaactac ttttgaattt cgtccgagtg cagatgtgaa agtcagtcgt attttaaatt
      421 tgcaagatga tttaaccatg gctttaatgg caaagtcaat ccgtatccaa gcgcctattc
      481 ctggaaaaga tgtagtgggt atagaagtgc caaatgatga aattcaaact atttatttaa
      541 gagaaatttt agaaagcgaa gtctttaaaa acgcaaaaag tcctttaacc atagctttgg
      601 gtaaagatat agtaggaaat gcttttgtaa ctgatcttaa gaaacttcca catttactca
      661 ttgcaggaac cacaggaagt ggaaagagcg tgggtataaa ttctatgctt ttaagccttt
      721 tatatcgcaa ctctccaaaa actctacgct taatgatgat agatccaaaa atgcttgaat
      781 ttagtattta taa
//
LOCUS       DARAII010000284          785 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.316, whole genome shotgun sequence.
ACCESSION   DARAII010000284 DARAII010000000
VERSION     DARAII010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 785)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.316"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..401)
                     /locus_tag="SB143_002202"
     CDS             complement(<1..401)
                     /locus_tag="SB143_002202"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Catalyzes two discrete reactions in the de novo
                     synthesis of purines: the cleavage of adenylosuccinate and
                     succinylaminoimidazole carboxamide ribotide; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEF9750678.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQMKESLDLILEDVSLLLEVIKKRALEHKNT"
     gene            481..>785
                     /locus_tag="SB143_002203"
     CDS             481..>785
                     /locus_tag="SB143_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pseudouridine synthase"
                     /protein_id="HEF9750679.1"
                     /translation="MAYTKIKLSNNGKKAFQVLIDNLKININEAQKLIDKKRLFCDGI
                     LVEEKNKILKGDVELIVYENNPKGVEIVFENEDFAVLEKESGILSHPNGRHCKYSLS"
BASE COUNT          283 a          129 c          110 g          263 t
ORIGIN      
        1 gtatttttat gttccaaagc gcgtttttta atcacttcta aaagcaaaga aacatcttct
       61 aaaatcaaat ccaaactttc tttcatctgt aaagctacag cggtgtcgat acaatcagaa
      121 cttgtcatcg cataatgtac aaagcggctt tcctctccta aactttcact tacacttgta
      181 agaaaagcaa tcacatcatg cttggtagtt ttttctatct catcaattct agctatatca
      241 aatttagcat ttttaagaat tttttcacaa tctgtatcat ttataaggcc tagtttattc
      301 caagctttta cagcagctag ctctactttt agccatgcat catattttgc ttgcatatcc
      361 cattttttgg ccatgatttc tctgctatat ctttcaacca tctttgaaac ctttttagct
      421 ataatttttt taaaaatgaa aatggaattt tatctaaaaa aatttagaga aaggttaagt
      481 ttggcttaca caaaaataaa actatcaaac aatggaaaaa aggcgtttca agtccttata
      541 gataatttga aaatcaatat aaatgaagcc caaaaactca tagacaaaaa aagacttttt
      601 tgtgatggaa ttttagtaga agaaaaaaat aaaatcttaa aaggcgatgt agaattaata
      661 gtctatgaaa acaatcccaa gggagtagaa attgtttttg aaaatgaaga ttttgcggta
      721 cttgaaaaag aaagtggaat tttaagtcat cctaatggca gacactgcaa atacagcctt
      781 agtga
//
LOCUS       DARAII010000285          769 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.321, whole genome shotgun sequence.
ACCESSION   DARAII010000285 DARAII010000000
VERSION     DARAII010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.321"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..268)
                     /locus_tag="SB143_002204"
     CDS             complement(<1..268)
                     /locus_tag="SB143_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEF9750680.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKENIILKLACALRENFKIILEA
                     NEKDMTNFTKSGAMRDRLLLDEKRIFSLCDALEKIAYLEDPIGKI"
     gene            339..>769
                     /locus_tag="SB143_002205"
     CDS             339..>769
                     /locus_tag="SB143_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEF9750681.1"
                     /translation="MKKVDLIVVGAGPTGIGCAVEAKLKNKEVLVLEKSNNICQTLMQ
                     FYKDGKRVDMAYKGCEGTNHGHVPFQDGTKESTIETFQNALNEHKIEVEFGSEVESVK
                     NENGVFLVSTGKGVYECKNIIVAIGRMGKPNKPDYKLPITLT"
BASE COUNT          276 a           93 c          140 g          260 t
ORIGIN      
        1 aaattttacc tataggatct tctaaataag caatcttttc caaagcatca caaagagaaa
       61 aaatgcgttt ttcatctagt aaaagtctat ctcgcattgc tccgcttttg gtaaaatttg
      121 tcatgtcttt ttcattggct tctaatatga ttttaaaatt ctctcttaaa gcacaagcta
      181 atttcaatat aatattttct ttatccttgg gagttaaatt gagcagtttt tgagaatttt
      241 tcttaatatt ttcaagtaaa tttcgcattt ttaatccttt atttacaaaa aacttgataa
      301 attatacaaa aaaatttaga attgaaaggt aaatttgaat gaaaaaagta gatttaattg
      361 tagtaggtgc agggccgaca ggaattggtt gtgcggttga agctaagctt aaaaataaag
      421 aagttttggt attagaaaaa tcaaacaata tttgtcaaac tttgatgcag ttttataaag
      481 atggcaaaag ggttgatatg gcttataagg gttgtgaagg cacaaatcac ggacatgttc
      541 cttttcaaga tggaaccaaa gaaagcacta tagagacttt tcaaaatgct ttaaatgagc
      601 ataaaataga agttgagttt ggctctgagg tagagagtgt gaaaaatgaa aatggagtat
      661 ttttagtaag tacaggcaag ggtgtttatg agtgtaaaaa tatcatcgta gctataggta
      721 gaatgggtaa gcctaataag cctgattata aacttcctat aactttaac
//
LOCUS       DARAII010000286          769 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.322, whole genome shotgun sequence.
ACCESSION   DARAII010000286 DARAII010000000
VERSION     DARAII010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 769)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.322"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>769)
                     /locus_tag="SB143_002206"
     CDS             complement(<1..>769)
                     /locus_tag="SB143_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEF9750682.1"
                     /translation="IKIEGNIGGGAFINTDMKENYGRLSLVKNDGKDILISGTGLSFT
                     GFGASNFISQASISLRESKGQIDANIADAMGFGSVNKGLVLAASSVSAYMSAAGSGFS
                     AGSGYSVGSTKNYSAVLTANAITISAASQLSAVYNVSAGSGFSSGSNLSQFATMKTTA
                     FGVKDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNV
                     KAAESQIRDVDFAAESANYSKANILAQSGSYAMAQANS"
BASE COUNT          244 a          162 c          128 g          235 t
ORIGIN      
        1 gaattagcct gtgccatggc ataagagcca ctttgagcca agatatttgc tttagagtag
       61 tttgcactct cagctgcaaa gtctacatca cggatttgcg attctgctgc tttaacgttt
      121 acttgagtaa cagtaatgtt gtttatagtt gatgtaactt gattttgcac tgaaccaatg
      181 tcggctctga tttgatcaag atttgttata gctgtttcag ctatatccat cacagccata
      241 gcacctttaa gcgtagttac acctgctgtt tcatctttta ctccaaaagc agttgttttc
      301 atagttgcaa actgagaaag atttgaacca cttgaaaaac ctgaacctgc agaaacatta
      361 tataccgcag aaagttgcga agcagctgaa atagttattg cattagcagt aagtacagca
      421 gaataatttt tggtactacc tacagaataa cctgaacctg ccgaaaatcc acttcctgca
      481 gcactcatat aagcgctaac agaagaagca gctaaaacca atcctttgtt aacagaacca
      541 aatcccatag catcagcgat attagcatca atttgtcctt ttgattctct taaagaaata
      601 gaagcttgag aaataaaatt acttgctcca aaacctgtaa aagaaaggcc tgttccgctg
      661 attaaaatat ccttaccatc gtttttaact aaagacaagc ggccatagtt ttctttcata
      721 tcagtattga taaaggcacc tccacctata ttaccttcga ttttaatcc
//
LOCUS       DARAII010000287          761 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.323, whole genome shotgun sequence.
ACCESSION   DARAII010000287 DARAII010000000
VERSION     DARAII010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.323"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..605
                     /locus_tag="SB143_002207"
     CDS             <1..605
                     /locus_tag="SB143_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF814 domain-containing protein"
                     /protein_id="HEF9750683.1"
                     /translation="EREFKLDDFEGKELEFKLEFSPKQSANLYYKNAKKLEQKAKNLN
                     IQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYFNEF
                     KICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARLCVS
                     FSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            607..>761
                     /locus_tag="SB143_002208"
     CDS             607..>761
                     /locus_tag="SB143_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750684.1"
                     /translation="MPVSPLGNVNYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKL"
BASE COUNT          314 a           87 c          132 g          228 t
ORIGIN      
        1 atgaaaggga atttaagctt gatgattttg aaggcaaaga gcttgaattt aagcttgaat
       61 ttagtcctaa gcaaagtgct aatttatatt ataaaaatgc taaaaaatta gaacaaaaag
      121 ctaaaaattt aaacatacaa agacaaaatt taaaagaaaa gttagatttt accttgagtt
      181 tgaaagaatt attgcttcaa gctaagagtg agatagagct tgaaatttta ctacctaaaa
      241 aaaatagcaa aaaaaatcaa gatcataaac aagaagatct tgtggcaaat ttttatttta
      301 acgagtttaa aatttgcgtg ggtaaaaatg aaaaaggcaa tgaattttta cttaaaaatg
      361 ctaaaaaaga tgatttgtgg cttcatgtaa gggatattcc tagtgcacat actttgattg
      421 tatcaaacaa gcaaaaaatc agccttgatg tgatagaatt tgctgcaagg ctttgtgtaa
      481 gcttttctaa gttaaagaaa ggttcgtatt gggtcgatta taccttaaaa aattttgtta
      541 aggttcagca aaaggcgttt gtaaattata caaattttaa aagtattaat atcacaaagg
      601 attaaaatgc cagttagccc attaggaaat gtcaattata taaatcaaaa tatggcttat
      661 ccagctacac aagcaagcaa tgagcttgca aaagaaggtt ttgcagctac gctaaatatg
      721 gctgaattta atgaaaaaga aaaaactttg aacaagcttg a
//
LOCUS       DARAII010000288          755 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.326, whole genome shotgun sequence.
ACCESSION   DARAII010000288 DARAII010000000
VERSION     DARAII010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..755
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.326"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            25..>755
                     /locus_tag="SB143_002209"
     CDS             25..>755
                     /locus_tag="SB143_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEF9750685.1"
                     /translation="MSNLNQNEQIKCPNCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     EDEVNAKRAEYTKAFNDLKAQKLEQEKLISEQVSQKLLLEKQKFEQELLTQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSD"
BASE COUNT          363 a          110 c          132 g          150 t
ORIGIN      
        1 ataaaaattc tcaaggaagt ctttatgtca aatttaaatc aaaacgagca aatcaaatgc
       61 ccaaattgtg gaagttttat cgatataagc actgctttat acgctcaaat tttagataaa
      121 gctaagcaag aaatgctaaa acaaaaaaaa gaatttgaag atgaagtcaa tgctaaaaga
      181 gccgaataca ccaaagcttt taatgactta aaagcccaaa agctagagca agaaaaactc
      241 ataagcgaac aagtaagcca aaaacttctt ttagaaaaac aaaaattcga gcaagaattg
      301 ctaacacaaa agcaaaattt ccaaaaagaa ttcagcgaga aatttaacaa agagcatgaa
      361 aatgaaatga aaatcatgca agaagaactc gagaaaaaaa gcaaagagct tagcgagttt
      421 ttaagcataa aggctgaaaa tgaaagacta aaaagagagc aaaaagaaaa tgaagaaaga
      481 ttgaaatttc aagccaaaga agaggctttt aaagaattta aagaacaaga aagcaaaaat
      541 ttggaatttg aaagagaaaa aatgcgtctt gaatttcaaa aaagtactca agagcaagat
      601 cttaaataca aagaactaga aacgaatttt aaaagtgtag ctcaaaagct agaagacgca
      661 caacgcagga tagaacaagg ctcacagcaa ctccaaggcg aagcagccga actactcata
      721 gaagaataca tacaaagtga gtatttaagc gatga
//
LOCUS       DARAII010000289          754 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.327, whole genome shotgun sequence.
ACCESSION   DARAII010000289 DARAII010000000
VERSION     DARAII010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.327"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            210..671
                     /locus_tag="SB143_002210"
                     /pseudo
     CDS             210..671
                     /locus_tag="SB143_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004288266.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
BASE COUNT          307 a          119 c           89 g          239 t
ORIGIN      
        1 aatacaaagc tacaaataat aaaaatgcaa aaataaacac aacttaaata taaattcaaa
       61 taaaaaataa aaaagtaagg aaatatagtt attttcaaag ctttaattta gaataaaata
      121 tttaaaatac atttttaatt ttcaaaatta tattctttgt tataattatt taaatcagta
      181 tttttaaacg catttaaagg gttaaatcaa tggatcatca taagctaatt cccctttggg
      241 atgaacgcta taatatcaac catcaaaaaa tcgataccca acaccaaaga ctcttcgaac
      301 ctgcagcaca agttgaaaat gcggttttta aatttgttaa gcgcgatgaa ttaaaagaaa
      361 ttttaaccga actctttgct tatatgaaag aacattttca tgatgaggaa gaatttatgc
      421 aagaaattca atatccacgc ctttacgagc acaaacaaat acataaaaat atcatacatg
      481 aaatgtttca attgatacaa aatataaaat ctacaaatga tttaaaagaa aaactatact
      541 ctatcatgtc aaaatggctt tctaggcata ttttaagcca tgatgttatg attattgctt
      601 gggtaaatga gaatttaaaa aaagatgaaa ataaagcact tgagttaaac gatttgccac
      661 caaaacaaac ctcttttatc tctccttttg gtgtattttg ccatagtctt ttgcacctca
      721 ctccctctcg ccttgaccgc taatcttatc aatg
//
LOCUS       DARAII010000290          753 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.328, whole genome shotgun sequence.
ACCESSION   DARAII010000290 DARAII010000000
VERSION     DARAII010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 753)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.328"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>753)
                     /locus_tag="SB143_002211"
     CDS             complement(<1..>753)
                     /locus_tag="SB143_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Bcr/CflA family efflux MFS transporter"
                     /protein_id="HEF9750686.1"
                     /translation="PALSHVEQSFQTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGR
                     KIPALVGIFFFIVSSLFCVIIDDIYAFIALRFFEALGGCAGVVIARAIVNDLFEIKEA
                     AGIFALMMVFNSLAPMLSPTFGGFLLEYFSWHSIFATLFALGILLFLMILFGLKESAP
                     HLKNKKFSHHEAIKSYKFVLSDKRFLVYILCASFALAAMFAYITGSSFVFTQFFSLSE
                     QKFALLFGANALGFVICANINARLVLKYESEK"
BASE COUNT          302 a          154 c          115 g          182 t
ORIGIN      
        1 attttttcgc tttcgtattt taaaaccaat ctcgcattga tatttgcaca gatgacaaag
       61 cctagagcat ttgctccaaa aagcaaggca aatttttgct cacttaagct aaaaaactgc
      121 gtaaaaacaa agcttgatcc tgtgatataa gcaaacatcg ccgccaaagc aaaagaagca
      181 catagtatat aaaccaaaaa gcgtttatcg cttaaaacaa atttgtagct ttttatcgct
      241 tcatgatggg aaaatttttt gtttttaaga tgaggtgcgg actcttttaa accaaaaagt
      301 atcatcaaaa aaagcaaaat tcccaaagca aacaaagtcg caaaaatact atgccatgaa
      361 aaatactcta acaaaaatcc cccaaaagtt ggcgaaagca taggagcaag agaattaaaa
      421 accatcatca aagcaaaaat ccctgcagct tctttgatct caaataagtc attgacaata
      481 gcccttgcga taaccacacc tgcacaaccc ccaagtgctt caaaaaatct caaagcgata
      541 aaggcataga tatcatcgat aatcacacaa aacaaactcg aaacgatgaa gaaaaatatc
      601 cctaccaaag ctggaatttt acgcccaaaa atatcactta aaggcccata tataagctgt
      661 cctaaggcaa aagcgataaa aaaacttgcg atactaagtt gggttaaaaa agaattagtt
      721 tgaaagcttt gctctacatg gctaagtgca ggc
//
LOCUS       DARAII010000291          746 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.329, whole genome shotgun sequence.
ACCESSION   DARAII010000291 DARAII010000000
VERSION     DARAII010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 746)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.329"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..294
                     /locus_tag="SB143_002212"
     CDS             <1..294
                     /locus_tag="SB143_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEF9750687.1"
                     /translation="PNHEIFMRDHKGANGMITIEFAEGYSKDDAIKFVDKLEYFSIGA
                     SWGGYESLATVTTPPRTATDWNARGPFVRFHIGLEDTKDLIADLTQAFDSIKK"
     gene            304..>746
                     /locus_tag="SB143_002213"
     CDS             304..>746
                     /locus_tag="SB143_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEF9750688.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHK"
BASE COUNT          282 a          119 c          143 g          202 t
ORIGIN      
        1 ccaaatcatg aaattttcat gcgtgatcat aaaggtgcaa atggtatgat taccatagaa
       61 tttgcagaag gttatagcaa agatgatgct attaaatttg tagataaact agaatacttt
      121 tcaattggtg ctagctgggg tggatatgaa agcttagcca ccgtaactac tccgcctaga
      181 actgcaacag attggaatgc aagagggcca tttgtaagat ttcatatagg tcttgaagat
      241 actaaagatt taattgctga tttaacacaa gcttttgata gtattaaaaa ataaggagat
      301 aagatgacag gaattagcgt atttgatcat agattactag cagactcatg gagcacgcag
      361 gaaatgcgtg ctattttttg cgaacaaaac cgcatacaaa aatggctcga tgttgaagca
      421 gctttagcaa aagcacaagc aaaacttaaa attatcccta aaaaagcagc tgatgagatc
      481 gcaaaaaaag ctcattataa atttatggat atggacttta tctttgctga atttaaaaag
      541 accaaacacc ctttagttcc tactgtaaga ggattagaaa aagcttgcga taataatcta
      601 ggcgaatatg tacattttgg agtaaccact caagatatca tcgatacagg actggttttg
      661 caatttaaag aagcaatgac tcttgtaaaa agcgaattaa aagctatcgc aaaagcccta
      721 gcgaaactag ctaaaaccca taaaaa
//
LOCUS       DARAII010000292          737 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.330, whole genome shotgun sequence.
ACCESSION   DARAII010000292 DARAII010000000
VERSION     DARAII010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 737)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.330"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>737
                     /locus_tag="SB143_002214"
     CDS             <1..>737
                     /locus_tag="SB143_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrodipicolinate N-succinyltransferase
                     N-terminal domain-containing protein"
                     /protein_id="HEF9750689.1"
                     /translation="SAAIMLEAFMQRGVEIDFEASEFVQILKLEDIDYALTCFKPFLE
                     EEGHKNIDILKIIKDKFKDDEFAFVCLFEDKEPLSVESVYLKLYLLSTKKVPLRSLNL
                     NGAFGLLSNVAWSDDKPIELEYLRENEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNT
                     RILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGG
                     ASILGVLSGTSGNAISVGKACLLGANSV"
BASE COUNT          236 a           89 c          167 g          245 t
ORIGIN      
        1 tctgcggcga ttatgcttga agcttttatg caaaggggtg ttgagattga ttttgaagca
       61 agcgaatttg tacaaattct taagcttgag gatatcgatt atgcgcttac ttgctttaaa
      121 ccttttttag aagaagaggg acataaaaat atcgatattt taaagattat caaagataaa
      181 tttaaagatg acgaatttgc ttttgtatgt ctttttgaag ataaagagcc tttgagtgtg
      241 gaaagtgttt atttgaaact ttatttgctt tctactaaaa aagttccttt aagaagttta
      301 aatttaaatg gagcttttgg acttttaagc aatgtagctt ggagtgatga taagcctatc
      361 gagcttgagt atttaagaga aaatgaaatg cgtttaaaaa tgagcaatca atatccaaaa
      421 attgattttg tagataaatt cccaagattt ttagcacata tcattcctga agataataca
      481 agaattctag aaagctctaa agtaagaatg ggtgcatctt tggctgcagg tactacaatc
      541 atgccaggtg caagctatgt gaattttaac gcaggaacaa caggggcttg tatggttgaa
      601 gggcgtataa gttcaagtgc tatcgtaggt gaaggctctg atgtgggcgg tggtgcttct
      661 attttaggtg ttttaagcgg aacaagtgga aatgctataa gtgtaggtaa agcttgtctt
      721 ttaggagcaa attcagt
//
LOCUS       DARAII010000293          727 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.331, whole genome shotgun sequence.
ACCESSION   DARAII010000293 DARAII010000000
VERSION     DARAII010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 727)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.331"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>727
                     /locus_tag="SB143_002215"
     CDS             <1..>727
                     /locus_tag="SB143_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014467968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEF9750690.1"
                     /translation="IRTGQITEKSWLLANSEVDQYMKQKYNRLSEKQRTLVDDLMQKG
                     EIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPIGVAAAIYLEEFAP
                     QNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVGGLTLAIMSLPIII
                     VSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGSILTLAGAIGETAP
                     LMIIGMIAFIPDVASSIFDPTSV"
BASE COUNT          214 a          111 c          151 g          251 t
ORIGIN      
        1 agataagaac agggcaaatc actgaaaaat cttggctttt ggcaaattca gaagtagatc
       61 aatatatgaa gcaaaaatat aatcgcctta gtgaaaaaca aagaacttta gtcgatgatc
      121 ttatgcaaaa aggcgagata gagcttaaat ttaatagcaa tttcttttta aatggggact
      181 caaaatctcc tgaaaattca ggaattttat cttcagttgt agggactttg cttgttatgc
      241 ttgtttgtat ggttgtgagt gttcctatag gcgttgcagc ggcaatttac ttagaagaat
      301 ttgcgccaca aaatatcctt acacatttta tagaagtgtg tattaacaac cttgcaagta
      361 ttccaagtat cttgtttgga cttttaggac ttggagtgtt tatcaatctt tttggaatgc
      421 ctcgctcaag tgctttagtg ggtgggctta ctttggcgat catgagttta cctattatca
      481 ttgtttcaac caaagcggct ttaaaaagtg tggatattaa catgaaaaat gctgcttatg
      541 ccttaggtat gacaaaggtt caaatggtaa aaggcattat gttacctttg gctatgccta
      601 tgattttaac aggttctatt ttgactttag caggggctat aggcgagact gcacctttga
      661 tgattattgg tatgatagcc tttatccctg atgtggcaag ttctattttt gatccaacta
      721 gcgtttt
//
LOCUS       DARAII010000294          723 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.333, whole genome shotgun sequence.
ACCESSION   DARAII010000294 DARAII010000000
VERSION     DARAII010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.333"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..383
                     /gene="hypB"
                     /locus_tag="SB143_002216"
     CDS             <1..383
                     /gene="hypB"
                     /locus_tag="SB143_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEF9750691.1"
                     /translation="CHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDLGEHLN
                     VVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDIKEATRLIKELNPRADII
                     TLDAKNGTNMELWYKVLKLKKELF"
     gene            383..664
                     /locus_tag="SB143_002217"
     CDS             383..664
                     /locus_tag="SB143_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEF9750692.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFYR"
BASE COUNT          259 a           84 c          151 g          229 t
ORIGIN      
        1 gctgtcattt ggacgctttt atggtgcatg aggctttgca tcatttagct attgatgatg
       61 tggatttgct ttttatagaa aatgttggaa atttggtttg tcctgcaagt tatgatttag
      121 gagagcattt aaatgtggtt ttgctttcgg taactgaagg aagtgataaa ccgcaaaaat
      181 accctgtgat gtttaaaaag gctgatatag ttttaatcac aaaggcagat ttggcccatc
      241 attttgattt cgatattaaa gaggcgacta ggttgattaa agaattaaat cctagagcag
      301 atattatcac ccttgatgca aaaaatggca ccaatatgga gctttggtat aaggtgctta
      361 aacttaaaaa ggagcttttt taatgtgttt gtctatacct tctgaaattt tagaaatcga
      421 tgagttaaac aatgctttag tacaaacttt aggcgtgaaa agaaaagtta atttggattt
      481 gattgatgaa cctttaaaac aaggcgatta tgtcttaatc catgtaggcg ttgctatgga
      541 aaaaatcgac aaagaagctg cactagaaag cattaaaacc tatcaagaaa tagtagaaaa
      601 aatgaatagt ggagagataa aaagtgatga aggagatttg ggtttaaatg aattttatcg
      661 atgaatttag agataaagaa agcattttag ctttaaaaaa actcatagaa caagaactta
      721 aaa
//
LOCUS       DARAII010000295          712 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.336, whole genome shotgun sequence.
ACCESSION   DARAII010000295 DARAII010000000
VERSION     DARAII010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.336"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..331)
                     /locus_tag="SB143_002218"
     CDS             complement(<1..331)
                     /locus_tag="SB143_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-phosphopantoate--beta-alanine ligase"
                     /protein_id="HEF9750693.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLEHDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNT"
     gene            complement(342..>712)
                     /locus_tag="SB143_002219"
     CDS             complement(342..>712)
                     /locus_tag="SB143_002219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEF9750694.1"
                     /translation="VQGKDLQSAQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSIL
                     EIPTIGIGSGKYCDGQVLVYHDLLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGI
                     FPSQEHSFDYLDDELLDKLY"
BASE COUNT          223 a          133 c           98 g          258 t
ORIGIN      
        1 tcgtattcat atctacatag gtgctaaaat tcttaagata catttgagtt gcatcgggga
       61 taaaaaccat atcaacgcca ttatcttgac acattttaat gtcgtgttct aaatctcttg
      121 gataactaga aaaatcttca ttaggcccaa attgcatagg atttacaaag atacttacta
      181 taaccttatc ttgtgttttg gcatgtttga ctaaacttaa atgtccatcg tgtaaaaaac
      241 ccatggttgg aacatagcct atactaagtt gatgtgattt ccaatctttt acaatttgtt
      301 ttgcttcttt gacagaagta atgacttgca tatttgtatc cttagtataa tttatctaat
      361 aattcatcat ctaaataatc aaagctgtgc tcttgggaag gaaaaatacc gcttttaact
      421 tcatctctat atttttcaac tcctacttga ggatcaattt tatcaaaatg ctttacaaat
      481 tttgctttaa aatctttatt taaacccaaa agatcgtgat aaactaaaac ttgtccatcg
      541 cagtatttgc ctgaacctat gccgattgtt ggaatttcta aaatagagct tattttttgt
      601 gctagtttta caggcacaca ttctaaaacc aacatacaag cacccgcatc ttgcacagct
      661 tttgcatcat ctataatttt ttgggccgat tgtaaatctt taccttgaac cc
//
LOCUS       DARAII010000296          712 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.337, whole genome shotgun sequence.
ACCESSION   DARAII010000296 DARAII010000000
VERSION     DARAII010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.337"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..268
                     /locus_tag="SB143_002220"
     CDS             <1..268
                     /locus_tag="SB143_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdopterin molybdenumtransferase MoeA"
                     /protein_id="HEF9750695.1"
                     /translation="LNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILA
                     NLEGKKEGSSAIINNLNNKAALMVVPKECEILENESLVDIIFMP"
     gene            complement(285..707)
                     /locus_tag="SB143_002221"
     CDS             complement(285..707)
                     /locus_tag="SB143_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory regulator AgrC"
                     /protein_id="HEF9750696.1"
                     /translation="MFIYFLIWQVLFVLGWNLRFILKLIMGEDVFIENFILDKIISVA
                     YIIIAFFFFKTLVQATKEKLFYLVFAFFVCGEIVSKLFFAFIRLLDSIRLQEMIVEII
                     FYAEIIFYICIPFTPAYFISFLIVWLSLKGQKEVKKAI"
BASE COUNT          294 a          108 c           90 g          220 t
ORIGIN      
        1 tttaaactct tggttacttc aacctaaaga ctatatttgc aaagcctttt tacaaggaag
       61 ttacaagaaa aaaacacctt atttggaatt tgtcgcttgc aatatagagt ttaaaaatgg
      121 acgcatttta gctaatcttg aaggtaaaaa agaaggctct agtgcgatta taaacaatct
      181 taacaataaa gccgctctta tggtggtgcc aaaagaatgt gaaattttag aaaatgaaag
      241 cttagtggat attatcttta tgccttgaaa tttgtcaaaa aggtttaaat cgcctttttg
      301 acttcttttt gcccttttaa actaagccaa acaattaaaa atgaaatgaa ataagcaggc
      361 gtaaatggaa tacagatata aaatattatc tccgcataaa atattatctc cactatcatt
      421 tcttgtaatc ttatactatc taatagccga ataaaagcaa aaaataactt acttacaatt
      481 tcaccacaaa caaaaaatgc gaaaacaaga tagaaaagtt tttcttttgt agcttgaact
      541 aaagttttaa agaagaaaaa ggcgatgata atataggcta cacttataat tttatccaaa
      601 ataaaatttt caataaaaac atcttcaccc attattaatt ttaaaataaa gcgtaaattc
      661 catccaagaa caaacaaaac ctgccatata agaaaataaa taaacatttt at
//
LOCUS       DARAII010000297          703 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.340, whole genome shotgun sequence.
ACCESSION   DARAII010000297 DARAII010000000
VERSION     DARAII010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.340"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            192..>703
                     /gene="queC"
                     /locus_tag="SB143_002222"
     CDS             192..>703
                     /gene="queC"
                     /locus_tag="SB143_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEF9750697.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKA"
BASE COUNT          246 a           93 c          136 g          228 t
ORIGIN      
        1 atgaatttat gcgcttgttt gtcaagttca accaaatttg ccattcttgg ataatcattc
       61 caacgactga tagaagcggc tttaaaaatg tgttctatga gttttatgtt tatcatgctt
      121 ttgccttttt gcaatttaaa tttaaaaatt ttcgttaaaa ttgtgaaatt atagcaaatt
      181 taaggataaa aatgagtaaa aaagcacttt gtatcataag tggcggtatg gatagtactt
      241 tgtgtgctta tctggccaaa aaagaaggtt atgaaatcat cgctttgcat tttgactatg
      301 aacaacgcac tcaagaaaaa gaaaaagaat gttttaagca aatttgcaag gctttaaaag
      361 tagaaaaatc ttatatttta gatgtgagtt ttatcaaaga tatagggggc aatgccttaa
      421 ccgataaaag tatagacatc cctaaaaatg agctttgtac aagcgatact ccacctatca
      481 cttatgtgcc ttttcgcaat ggaattttct taagtatagc aggatctttg gctgaaaagg
      541 aaaattgtga gagtattttt ataggggtgg tagaagaaga tggcagtggt tatcctgact
      601 gtactgatga gtttatacaa aaggcacaag aatttatcaa tgaaggtacg agtaagaatt
      661 tcaaagtttg tataaaaact ccgcttgtta gactaaacaa agc
//
LOCUS       DARAII010000298          703 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.341, whole genome shotgun sequence.
ACCESSION   DARAII010000298 DARAII010000000
VERSION     DARAII010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.341"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>703
                     /locus_tag="SB143_002223"
     CDS             <1..>703
                     /locus_tag="SB143_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEF9750698.1"
                     /translation="QRYREELMKELPEVDLFTGVGDYERIDEMILKKTNLFSNSTYLQ
                     GENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKGRLKSREISSIIAELKDLVARG
                     YKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIEGVKAARILYLYPTSASEALIKRI
                     IASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEMLNLMKSAPDSFLRTGFIVGHP
                     GESEADFEELCAFVK"
BASE COUNT          218 a           98 c          161 g          226 t
ORIGIN      
        1 tgcagcgtta ccgcgaagag cttatgaaag aacttcccga agttgatctt tttactggtg
       61 tgggcgatta tgaaagaatc gatgaaatga tacttaaaaa aaccaattta ttttcaaatt
      121 cgacttattt gcagggtgaa aactccaaac gcatcatcac aggttctaat tcgcatgctt
      181 ttataaaaat cgctgaaggt tgcaatcaaa aatgttcttt ttgtgcgatc ccaagtttta
      241 agggtaggtt aaaatcgcgt gaaatttcta gcattatagc cgagcttaag gacttggtgg
      301 ctaggggtta taaggatttt tcttttatcg cacaagatac gagttcttat ttgtttgata
      361 aaggtgaaaa agatgggctt atacgcttga ttgatgaggt agaaaagatc gagggtgtta
      421 aagcggctag aattttatat ctttatccta caagtgcgag tgaggctttg atcaagcgca
      481 ttatagcttc tgaaattttt gtaaattatt ttgatatgcc tttacaacac ataagtgata
      541 atatgcttaa aatcatgaag cgtggggcaa atagcacaag attgaaagaa atgttaaatt
      601 tgatgaaaag tgcacctgat agttttttgc gtacgggttt tatcgtaggg cacccaggtg
      661 aaagtgaagc ggattttgag gagctttgtg cgtttgttaa aga
//
LOCUS       DARAII010000299          698 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.343, whole genome shotgun sequence.
ACCESSION   DARAII010000299 DARAII010000000
VERSION     DARAII010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.343"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>698)
                     /locus_tag="SB143_002224"
     CDS             complement(<1..>698)
                     /locus_tag="SB143_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein"
                     /protein_id="HEF9750699.1"
                     /translation="TRIHSQGSVQTTNKNTDVAINGDGFFMVSDDGGLTRYLTRDGDF
                     KLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFIDPGMHIPAAKSTEVAIKAN
                     LNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQFYTTSKNSVEVTEKGVDA
                     GSLFNASGTGLNLRDGQGIWVSYADAKFTTEGGATFDENSKAGQNGVIFWGNKDNAVN
                     LDITLNGVNIQNAN"
BASE COUNT          206 a          155 c          100 g          237 t
ORIGIN      
        1 atatttgcat tttgtatatt aacgccattt aaagtaatat ctaaattaac agcattatct
       61 ttattacccc aaaaaataac accattttga ccagctttac tattttcatc aaaagtagca
      121 ccaccttctg ttgtgaattt agcatccgca taagaaaccc aaattccttg tccatctctt
      181 agattaagcc ctgttccgct tgcattgaaa agcgagcctg catccacacc cttttccgtc
      241 acttctacag aattcttaga agtcgtataa aactgagtag ttcctgtatc attttcatct
      301 tctgctcttt gggttttagt attccatcca tgaacagaat caagtgcata aagatttcta
      361 cttgaagttc ctatatttaa accactattt aaattcgctt tgatagcaac ttcagtagat
      421 tttgctgcag ggatatgcat acctggatcg ataaaaatgt tttgtggagt tcttgaacta
      481 tctatagttt gatcatccca gttgatattc cacccttgga caacaaaacc tgcattattg
      541 acaaaatttc cataagcatc aagtttaaaa tccccatctc ttgtaagata gcgcgtaagc
      601 cccccatcat cactcaccat aaaaaagccg tctccattaa tcgcgacatc ggtgttttta
      661 tttgttgttt gcactgagcc ttgagagtga attctagt
//
LOCUS       DARAII010000300          692 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.344, whole genome shotgun sequence.
ACCESSION   DARAII010000300 DARAII010000000
VERSION     DARAII010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.344"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..322
                     /locus_tag="SB143_002225"
     CDS             <1..322
                     /locus_tag="SB143_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEF9750700.1"
                     /translation="NQINNVLGFPFIFRGALDVRATKITENMKVAAAKALADLAKLPV
                     SDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVKDGVAKVKNFNEKAYF
                     ESLK"
     gene            319..>692
                     /gene="upp"
                     /locus_tag="SB143_002226"
     CDS             319..>692
                     /gene="upp"
                     /locus_tag="SB143_002226"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEF9750701.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRT"
BASE COUNT          249 a           89 c          132 g          222 t
ORIGIN      
        1 taatcaaatc aataatgttt taggctttcc ttttattttt cgtggggctt tagatgtgcg
       61 tgcgacaaaa attactgaaa atatgaaagt agcggctgct aaagcattag cagatcttgc
      121 aaaacttcct gtaagtgatg cagttaaaaa ggcttataat ttaagtacct tagaatttgg
      181 aagagattat gtcataccaa aaccttttga tgaaagagta aaagctgcag taagtacagc
      241 tgtagcagca gctgcggtaa aagatggtgt ggctaaggta aaaaatttta acgagaaagc
      301 ttattttgaa agcttaaaat gaaaaatatt cattgtatca atcatccatt gatcgaacat
      361 aaattaggaa ttttaagggc taaagagaca aagccctttc aatttcgtat gttaatcgat
      421 gaaatttcat cttttttgct ttttgaagcg agtaaagatt tttctttaaa agaaattgaa
      481 atttcaacac ctatacaaaa aactacagta aaaaaacttg atgaaaagat tatgatttgt
      541 cctattttaa gagctgcatt aggaatgctt gaaagtgttt ttaagatgat tcctgatgca
      601 agtgttgggt ttttggggtt tgtgagaaat gaagaaactt taaaggcgga tttttatttt
      661 caaaaacttc ccaaagatgc aaaaaaacgc ac
//
LOCUS       DARAII010000301          691 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.346, whole genome shotgun sequence.
ACCESSION   DARAII010000301 DARAII010000000
VERSION     DARAII010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.346"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>691)
                     /locus_tag="SB143_002227"
     CDS             complement(<1..>691)
                     /locus_tag="SB143_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEF9750702.1"
                     /translation="TGHRVGELLEPQRLCEALIKDFEANKTFFEMLEIEIPSAEELLA
                     DLKRFNEILTPYITDTTRMLWKALDEDKKVLLEGAQGSMLDIDHGTYPYVTSSSTISA
                     GALTGLGLNPKEAGNIIGIVKAYTTRVGNGAFPTEDKGEDGEKIAQIGKEIGVSTGRK
                     RRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGFEKIKICRAYEYKGMEIDYIPSDLE
                     NVQPIYEEIDGW"
BASE COUNT          211 a          161 c           88 g          231 t
ORIGIN      
        1 cccaaccatc tatttcttca taaataggtt gaacattttc taaatcgctt ggtatatagt
       61 cgatttccat gcccttatat tcataagcac gacaaatttt tatcttttca aaaccatcta
      121 aaacatcaag cttcatcaaa gataaagcat caagaccatt aagtcttgct gtatatctta
      181 cagcaactgc atcaaaccat ccacagcgtc ttttacgtcc cgtgcttacg ccaatttctt
      241 ttccaatttg cgcaattttt tctccatctt cacccttatc ctcagtagga aaagctccat
      301 ttcccacacg cgttgtataa gcttttacaa tacctataat atttcccgct tctttaggat
      361 ttaacccgag tcctgttaaa gcgcctgctg aaatagtact tgagcttgta acataaggat
      421 aagttccatg atcaatatca agcatagagc cctgagcgcc ttctaaaagc acttttttat
      481 cctcatccaa agctttccaa agcattcttg tagtatctgt aatataagga gttaaaattt
      541 cattaaagcg ttttaaatca gcaagcaatt cttcagcact tggaatttca atttcaagca
      601 tttcaaaaaa agttttatta gcttcaaaat cttttatcaa agcctcacaa agtctttgtg
      661 gttctaaaag ctcaccaact ctatgtccgg t
//
LOCUS       DARAII010000302          685 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.347, whole genome shotgun sequence.
ACCESSION   DARAII010000302 DARAII010000000
VERSION     DARAII010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 685)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.347"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            192..617
                     /locus_tag="SB143_002228"
     CDS             192..617
                     /locus_tag="SB143_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002800331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750703.1"
                     /translation="MLKKLLSVAALGALLSSSAFAEDILAKVSNGAISDNSAGVKVLS
                     LDEMKEVKGGFNFVRDSRYDNIAGIRSYAYVVTDADKSQLQISSNSKVLAQYRYVNNQ
                     KDYYLQSYNNGTLGTIFPNYSTSWGQYAMKIMNEFRSKY"
BASE COUNT          249 a           79 c          109 g          248 t
ORIGIN      
        1 tgtttatatt ttagattagc tttattacaa ttttatacat ttttttaaaa aataaaaaac
       61 tttcacaaat accataaaat cattatatat attttttaaa tatctataac ataatacttt
      121 gattaaattt gatttagggc atttattatg ataaaatgaa ttatattaca ttttaaaaca
      181 aaggagctaa aatgttaaaa aaattactaa gtgttgcagc tttaggtgct ttattgtcaa
      241 gttctgcttt tgcagaggat attcttgcta aagtcagtaa tggagcaatt agcgataata
      301 gtgcaggtgt taaagttctt agccttgatg agatgaaaga ggttaagggt gggttcaatt
      361 ttgtaagaga tagtaggtat gataatattg caggtattag aagttatgcc tatgttgtaa
      421 ccgatgcaga caagagtcag ttgcaaataa gttcaaatag caaggttctt gctcaatacc
      481 gctatgtaaa taatcaaaaa gattattatt tgcaaagcta taacaatgga actttaggga
      541 caatttttcc taattattct acaagttggg gacaatatgc aatgaaaatc atgaacgaat
      601 tcagaagtaa atattaattc tcactctctg ttccatttta ctccaaaatg gaacagatct
      661 tgcttatatt attttaatat attta
//
LOCUS       DARAII010000303          684 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.348, whole genome shotgun sequence.
ACCESSION   DARAII010000303 DARAII010000000
VERSION     DARAII010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.348"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..298
                     /locus_tag="SB143_002229"
     CDS             <1..298
                     /locus_tag="SB143_002229"
                     /EC_number="2.3.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834430.1"
                     /note="catalyzes the synthesis of 2-methylcitrate from
                     propionyl-CoA and oxaloacetate; also catalyzes the
                     condensation of oxaloacetate with acetyl-CoA but with a
                     lower specificity; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-methylcitrate synthase"
                     /protein_id="HEF9750704.1"
                     /translation="VWSKHLGGDDLLFKISEAIEALMKEKRPSLPPNADFYSASAYHF
                     MGIPTEYFTPIFIMSRVSGWCAHIKEQRANNKLIRPSSEYIGVEPRKFVKIQDR"
     gene            308..>684
                     /locus_tag="SB143_002230"
     CDS             308..>684
                     /locus_tag="SB143_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002790318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HEF9750705.1"
                     /translation="MSDMGILEAKRPEFDELLTKIAKYADEFEITSDLALETARYCLM
                     DTIGCGLLALKYPACTKLLGPSVEGAEFRPLGAKVFGTSYQLEPIRGAFNVGAMVRWL
                     DFNDTWLAAEWGHPSDNLGAIWAV"
BASE COUNT          214 a           95 c          168 g          207 t
ORIGIN      
        1 ggtttggagt aagcatttag ggggcgatga tttgcttttt aaaatcagtg aagccataga
       61 agctttgatg aaagaaaaac gcccaagttt gccacctaat gcagattttt atagtgcatc
      121 agcttatcat tttatgggaa ttccaactga gtattttacg ccgattttta ttatgagtcg
      181 cgtaagtggt tggtgtgcgc atattaaaga gcaaagagca aacaataaac ttatacgccc
      241 aagtagtgaa tatataggcg ttgaaccaag aaaatttgta aaaattcaag acagataagg
      301 agaaaaaatg agtgatatgg gaattttaga ggcaaaacgc cctgaatttg atgaactttt
      361 aacaaaaatt gcaaaatacg ctgatgaatt tgaaatcaca agtgatttgg ctttagaaac
      421 ggctagatat tgtttgatgg atactatagg ttgtgggctt ttagcgctta aatatcctgc
      481 ttgcaccaag cttttaggac caagtgttga aggggctgaa tttagacctt tgggtgcaaa
      541 agtgtttgga acatcttatc aattagagcc aatccgtggg gcttttaatg tgggtgctat
      601 ggtaagatgg cttgatttta atgatacatg gcttgcggct gaatgggggc atccaagcga
      661 taatttaggt gcgatttggg cagt
//
LOCUS       DARAII010000304          682 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.350, whole genome shotgun sequence.
ACCESSION   DARAII010000304 DARAII010000000
VERSION     DARAII010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.350"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(184..678)
                     /locus_tag="SB143_002231"
     CDS             complement(184..678)
                     /locus_tag="SB143_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEF9750706.1"
                     /translation="MEEIFLAKDALVTSKTDLKGNIIYANNDFLKYAGYSVGELLSKP
                     HNIVRHEDMPRTVFKCLWDYVQNGKEIFAFVKNKAKDGRYYWVFANVSASFDANGNII
                     NYYSVRRAPNRKSLSIIEEIYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELVFHL
                     QENN"
BASE COUNT          254 a          108 c           75 g          245 t
ORIGIN      
        1 aaaaatgaca cctaaaacac cgataacact tagaaaaata gttgataata atccattttt
       61 catcataatt tatcccttta ttaaaaattt ttgaattcat aaattaaagc aatactttaa
      121 taatatatta ctttaaattt ttaggcgaag attgtacaat aaaaaagatt aaatatatct
      181 tatttagtta ttttcttgta agtgaaaaac aagttcatta taagtcattt tataagaact
      241 cacaatatcc attaaagctg aaactccagc attaatgcct gatttttgct ctttttcaag
      301 taaaatttta taaatttctt caattataga aagagatttt ctattaggcg cacggcgaac
      361 agaataataa ttgatgatat ttccattggc atcaaatgaa gcacttacat ttgcaaatac
      421 ccaataatat cttccatctt tggctttatt tttcacaaaa gcaaaaatct ctttaccatt
      481 ttgtacataa tcccacaaac atttaaaaac agtgcggggc atatcttcat gtcttactat
      541 attatggggc tttgataaaa gttcaccaac actataacct gcatatttta aaaaatcatt
      601 attagcataa atgatatttc ccttaagatc agtcttggat gtaacaagag cgtcttttgc
      661 taagaatatt tcttccatag tt
//
LOCUS       DARAII010000305          682 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.351, whole genome shotgun sequence.
ACCESSION   DARAII010000305 DARAII010000000
VERSION     DARAII010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.351"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..287)
                     /locus_tag="SB143_002232"
     CDS             complement(<1..287)
                     /locus_tag="SB143_002232"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750707.1"
                     /translation="MINTAYMNNHHKGGYSTQKLKDISQATTQSLGISKNYKIDATQM
                     QTLVKNLSQNKHFDTIDFTKTLENAYKVFSNLMQFSKNELPLGFEMDKNSF"
     gene            complement(485..628)
                     /locus_tag="SB143_002233"
     CDS             complement(485..628)
                     /locus_tag="SB143_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750708.1"
                     /translation="MLENLIAQIIEGIVGCKARKMGFFCIIAVMALAFVLWLVFSHLY
                     GYL"
BASE COUNT          216 a          120 c           93 g          253 t
ORIGIN      
        1 tcaaaactat ttttatccat ttcaaaacct agcggaagtt catttttaga aaattgcatt
       61 aaattagaaa acactttata ggcgttttct agcgttttgg taaaatcgat agtgtcgaaa
      121 tgtttatttt gagaaagatt tttaactagt gtttgcattt gtgtcgcatc aattttataa
      181 ttttttgaaa ttcccaagct ttgcgttgtt gcttgagata tatcttttaa tttttgagta
      241 gaataaccac ctttatgatg gttattcata taagctgtgt ttatcatacg ctcactcctt
      301 gccgatttat cttaatttaa atcggcttta tggtttttac cttgataatc cgcctaaatg
      361 gctatcaaat tgatttttat atctgtagct tataaataag ttggctatga tgaaaaataa
      421 ctttttcatt ttttctcctt ttttataatt tgtaaaatac aagcaaattt tgtgccaaac
      481 tttatcacaa atacccataa agatgagaga aaactaacca caaaacaaag gctaacgcca
      541 tcacagctat tatgcaaaaa aaccccattt tacgagcttt gcaacctact ataccctcta
      601 tgatttgtgc tattagattt tcaagcatca ataccgccaa ccctttgagc caacacccga
      661 attaagagga tgtctttcac ta
//
LOCUS       DARAII010000306          677 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.353, whole genome shotgun sequence.
ACCESSION   DARAII010000306 DARAII010000000
VERSION     DARAII010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.353"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>677
                     /locus_tag="SB143_002234"
     CDS             <1..>677
                     /locus_tag="SB143_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional heptose 7-phosphate kinase/heptose
                     1-phosphate adenyltransferase"
                     /protein_id="HEF9750709.1"
                     /translation="ENLEKGIKKLKEDFSLRYSIITLSEAGIALFNEGLKIAPAKALE
                     VYDVTGAGDSVIAVLAFCLANGIEIFKACELANEAAAVVVSKIGSVSVSFDEIRSFKS
                     MSFEKKIKNKEELLTLLKQNDKKIVFTNGCFDIVHFGHIKYLEKAKRLGDVLIVGLNS
                     DASVKRLKGESRPVNSEFQRACMLAAFYFVDFVVIFDENTPLELISFLKPDILVKGAD
                     YKDKLVVG"
BASE COUNT          219 a           68 c          157 g          233 t
ORIGIN      
        1 gaaaatttag aaaaagggat taaaaaatta aaagaagatt tttctttgcg ttattctatt
       61 atcactcttt cagaagcggg gattgcgctt tttaatgagg gtttaaaaat cgcacctgct
      121 aaagccttag aagtttatga tgtaacagga gcgggcgata gtgtgattgc cgttttggct
      181 ttttgtttgg caaatgggat tgaaattttt aaagcttgtg aacttgccaa tgaagctgca
      241 gccgttgtgg taagtaaaat aggtagtgtg agtgtgagtt ttgatgagat tagaagtttt
      301 aaaagtatga gttttgagaa aaagatcaaa aataaagaag agcttttaac gcttttgaaa
      361 caaaatgata aaaagattgt ttttacaaat ggttgttttg atatcgtgca ttttggacat
      421 ataaaatatc ttgagaaagc taaaagattg ggcgatgttt tgattgtagg tttgaactca
      481 gatgcgagtg tgaaaagact caaaggcgag agtcgtcctg taaattcaga gtttcaaaga
      541 gcttgtatgt tggcagcttt ttattttgta gattttgtag tgatttttga tgaaaacaca
      601 cctttagaac ttataagctt tttaaagcct gatattttgg ttaaaggagc tgattataaa
      661 gataaacttg ttgtagg
//
LOCUS       DARAII010000307          674 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.355, whole genome shotgun sequence.
ACCESSION   DARAII010000307 DARAII010000000
VERSION     DARAII010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 674)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.355"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            24..>674
                     /locus_tag="SB143_002235"
     CDS             24..>674
                     /locus_tag="SB143_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEF9750710.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTIKAT
                     IGATQSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVISTSVGTGLGAL"
BASE COUNT          246 a          111 c          123 g          194 t
ORIGIN      
        1 gaattttttt aaaaggattt aaaatgggat ttcgtattaa cactaatgtt gcagctttaa
       61 atgctaaagc aaacgccgat ttaaatagta aaagtttaga tgcttcttta agcagactta
      121 gttcaggtct tagaatcaac tccgcagcag atgatgcttc agggatggcg atagcagata
      181 gtttaagatc tcaagctaat actttaggtc aagctatatc taatggtaac gatgctttag
      241 gtatcttaca aactgctgat aaggctatgg atgagcaact taaaatctta gatacaatca
      301 aaactaaggc aactcaagca gctcaagatg gacaaagtct aaaaacaaga accatgcttc
      361 aagcagatat caaccgttta atggaagaac ttgacaatat cgcaaatact acctcattta
      421 acggtaaaca acttttaagt ggaaatttta tcaatcaaga atttcaaatc ggtgcgagtt
      481 caaatcaaac tataaaagct accataggag caacccagtc ttctaagata ggtttaacac
      541 gctttgaaac aggaggaaga atttcatcta gtggtgaagt gcaatttact cttaaaaact
      601 acaatggtat agatgatttt caattccaaa aagttgtgat ttcaacttca gttggaacag
      661 gacttggagc ttta
//
LOCUS       DARAII010000308          673 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.356, whole genome shotgun sequence.
ACCESSION   DARAII010000308 DARAII010000000
VERSION     DARAII010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 673)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.356"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>673
                     /locus_tag="SB143_002236"
     CDS             <1..>673
                     /locus_tag="SB143_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron permease"
                     /protein_id="HEF9750711.1"
                     /translation="FENMEGSIGRNIGKKAITMERKFTNLRRLYKDKAPIEQIDALIE
                     SLYYDLDEVAPILQNGYRLQAEASDTNYDKAAAEKSSIQANAKREAEAEALIAQMMGI
                     DKNDLAKTNSSSSTQNETINDSINNDLQAAAAMDARLQFVLDNISTKFSQAANAFKNK
                     DYQTSKDFLNDALFNDYRNTKVEVLINKFTKAGNDQKIQQAIRTLIRQINDAKIDEKG
                     LRDGLD"
BASE COUNT          273 a          105 c          116 g          179 t
ORIGIN      
        1 tttgaaaata tggaaggttc cattggaaga aatataggca aaaaagccat caccatggaa
       61 agaaaattta caaatttgcg tcgcttgtat aaagataaag cgcccataga gcaaattgat
      121 gctttaattg aaagtcttta ttatgattta gatgaagttg caccgatttt gcaaaatggt
      181 tatcgcttac aagcagaagc aagtgataca aattacgata aagcagcagc tgaaaaatca
      241 agcatacaag ccaatgccaa gcgtgaagca gaagcagaag ctttaatcgc acaaatgatg
      301 ggtattgata aaaatgattt agcaaaaact aattcttctt ctagtaccca aaacgaaact
      361 ataaatgata gtataaataa tgatttacaa gcggctgcgg ctatggatgc aagattgcaa
      421 tttgtattag ataatatatc tactaaattc tctcaagcag ccaatgcttt taaaaataaa
      481 gattatcaaa caagtaaaga ttttttaaat gatgctttat ttaatgatta tcgcaatacc
      541 aaagttgaag ttttgatcaa caaattcacc aaagcaggta atgatcaaaa aatccaacaa
      601 gccatacgca cccttatacg ccaaatcaac gatgcaaaaa tagatgaaaa aggcttaaga
      661 gatggcttag ata
//
LOCUS       DARAII010000309          663 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.358, whole genome shotgun sequence.
ACCESSION   DARAII010000309 DARAII010000000
VERSION     DARAII010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.358"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(152..472)
                     /locus_tag="SB143_002237"
                     /pseudo
     CDS             complement(152..472)
                     /locus_tag="SB143_002237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818952.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG"
BASE COUNT          222 a          106 c           86 g          249 t
ORIGIN      
        1 caagaacatg aaaaatgttt cttcatttaa tagtggatca tcagcaacag attgttgttc
       61 tatgattaca gattctagct atagatctct ttcatgtaat atatttcatg atagagatta
      121 aaacaagtct agcttttagc tagactcgat tttacatatt tctattttgg ttaccaaaat
      181 ctatggcttt gctaatgtca gcttttccat ctttaatatc tttctgtacg ctagcataat
      241 caatcttatt atttctttcc tcagtagcag ttcctgtttt aaattcagct gcgtttaccg
      301 ctctttgaat tccacctgct aatccttctg atttaacatc attaggggca tttcttgttg
      361 ccataaagcc tttttgtctt gaatttaaat catctatggc tttattgtga tcagtcataa
      421 caccttttgg atcataataa ttatgttttg attgctcgtg taatccattt gaaaaggact
      481 gcaatagaga ttaaaattgc atattaactt gcaatcaact taaagttaag ttgtagtcag
      541 acaaaaaaag aaatccgttc caaaccctat aaaataagca tttaatagca aaaatactta
      601 caaaaattta ttaaaatata atataattat gttatataaa taagttaata tgaaagaaat
      661 aac
//
LOCUS       DARAII010000310          660 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.359, whole genome shotgun sequence.
ACCESSION   DARAII010000310 DARAII010000000
VERSION     DARAII010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.359"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..474
                     /locus_tag="SB143_002238"
     CDS             <1..474
                     /locus_tag="SB143_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEF9750712.1"
                     /translation="FFKKLIEQGAKELPITDTRMTRFWISLEDGVKFVLSNFARMHGG
                     EIFIPKIPSMKITNLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENYYAI
                     SPSIKLVDQESDFSINALGEKGQKVKDGFSYSSDNNPQWASEKELLEIINHTEGF"
     gene            476..>660
                     /locus_tag="SB143_002239"
     CDS             476..>660
                     /locus_tag="SB143_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEF9750713.1"
                     /translation="MLTYSHQNIDQSDIDALTKALKNEILTGGKKVDEFEEALCEYIG
                     VKHACVLNSATSALHLA"
BASE COUNT          234 a          111 c          126 g          189 t
ORIGIN      
        1 ttctttaaaa agcttattga gcaaggtgct aaagaacttc ctatcaccga tacaagaatg
       61 actcgttttt ggatcagcct tgaagatgga gtgaaatttg tactgagcaa ttttgcaaga
      121 atgcacggag gagaaatttt catccctaaa attccttcga tgaaaatcac gaatctagct
      181 cacgctttag ctcctaattt aagccataaa atcataggca taagagcagg agaaaaactt
      241 catgaaatta tgatttcaag tgatgatagc catctaactt atgaatttga aaactattac
      301 gctataagtc ctagcatcaa gcttgtggat caagagagtg attttagcat caatgccttg
      361 ggtgaaaaag ggcaaaaagt aaaagatgga ttttcttata gctcggataa caatccgcaa
      421 tgggcaagtg aaaaagaact tttagaaatc atcaatcaca ccgaaggttt ttaaaatgct
      481 tacttattct catcaaaaca tcgatcaaag cgatatagat gcgcttacaa aagctttaaa
      541 aaatgaaatt ttaacagggg gtaaaaaggt agatgaattt gaagaagcac tttgcgaata
      601 cataggtgtt aagcacgctt gtgtgttaaa ttcggctact tctgcccttc atcttgccta
//
LOCUS       DARAII010000311          654 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.361, whole genome shotgun sequence.
ACCESSION   DARAII010000311 DARAII010000000
VERSION     DARAII010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 654)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.361"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(91..>654)
                     /locus_tag="SB143_002240"
     CDS             complement(91..>654)
                     /locus_tag="SB143_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750714.1"
                     /translation="IAGVKTFSSPVVVPNGTANTHAVNLAQLNTKANQATTYTKTEVD
                     TRVNAKANANAVVALTGNQTIAGIKTFSVPPVSATNPTANNQVANKSYVDYGGGIKNL
                     GNQTAPKIDLRQAQHFILTMTARGAIGIANWGGAGKSGTITVNNAQNITAFSAPFKFR
                     VAQSGFSGTETFAYFCIASNNVLITRT"
BASE COUNT          182 a          119 c          120 g          233 t
ORIGIN      
        1 ggaatggata aatccttatt tgcaaaaaac tcatattttc cacctatgct tatcgcatga
       61 aggctttgtg ataatagtac gctagtcatc ttaagtccta gttattaaaa cattattcga
      121 agctatgcaa aaataagcaa aagtttcagt gccactaaat ccactttgag ctactctaaa
      181 tttaaaaggt gccgaaaaag cagtgatatt ttgagcatta ttgacagtga tagttccact
      241 tttacctgct ccaccccaat ttgctatacc aatagctcct ctggctgtca ttgttaagat
      301 aaaatgctga gcttgtctta aatctatttt tggtgctgtt tgatttccta agttcttaat
      361 tccgccgcca taatccacat atgatttgtt tgctacttga ttgttagcag taggattagt
      421 tgctgataca ggtggtactg agaatgtctt aatacctgct atagtttggt taccagttaa
      481 ggctactacg gcattagcgt tagctttagc atttactcta gtatcaactt cagtttttgt
      541 ataagttgta gcttgattag ctttggtatt tagctgggct aaattaactg cgtgagtgtt
      601 tgctgtccca ttaggtacta ctacagggct agaaaaagtt tttacacctg ctat
//
LOCUS       DARAII010000312          643 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.363, whole genome shotgun sequence.
ACCESSION   DARAII010000312 DARAII010000000
VERSION     DARAII010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 643)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.363"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..342
                     /locus_tag="SB143_002241"
     CDS             <1..342
                     /locus_tag="SB143_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016818178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEF9750715.1"
                     /translation="WMDNYSLAYNDFDKTKKIIDKAMKKLKKGGKFLSVTPSLYNDGF
                     EKDESLGYHLVKPTSGSDACTGIIRYCDEKDLRKLYESATYSISDIKIHIQKNLTKQL
                     NELFIVEGYKI"
     gene            339..>643
                     /locus_tag="SB143_002242"
     CDS             339..>643
                     /locus_tag="SB143_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEF9750716.1"
                     /translation="MNIWEQIFSKKEWGKYPSENVIRFIARNFYNVQDRSKINILELG
                     FGTGANLWFCAKEGFSVSGIEWSKTGLERFKARMKDENLSDKIKQIELGDYIDKLDS"
BASE COUNT          259 a           56 c          128 g          200 t
ORIGIN      
        1 tggatggata attattcctt agcttacaat gattttgata aaactaaaaa gattatagac
       61 aaagcgatga aaaaactcaa aaaaggtggg aaatttcttt ctgtaactcc aagtctttac
      121 aatgatggtt ttgaaaaaga tgagagtttg gggtatcatt tagtaaaacc tacaagtgga
      181 agtgatgctt gcacaggtat tataaggtat tgtgatgaaa aagatttacg aaaactttat
      241 gagagtgcaa cctatagtat tagtgatata aaaattcaca tacaaaaaaa tttaaccaaa
      301 caattaaatg aactttttat agttgaagga tataaaatat gaatatatgg gaacaaattt
      361 tttctaaaaa agaatggggc aagtatccaa gtgaaaatgt tataagattt atagcaagga
      421 atttttataa tgtgcaagat agaagtaaaa tcaatatttt agaacttggt tttggaacag
      481 gagctaattt atggttttgt gcaaaagaag gttttagtgt aagtggtata gaatggagca
      541 aaacaggatt agagcgtttt aaagctcgta tgaaagatga gaatttaagt gataaaatca
      601 agcaaattga actgggtgat tatatcgata aattagatag ttt
//
LOCUS       DARAII010000313          639 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.364, whole genome shotgun sequence.
ACCESSION   DARAII010000313 DARAII010000000
VERSION     DARAII010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.364"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>639)
                     /locus_tag="SB143_002243"
     CDS             complement(<1..>639)
                     /locus_tag="SB143_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEF9750717.1"
                     /translation="DATLLFTNAGMVPFKSIFIGEVPRPNPPRKTSCQTCIRAGGKHN
                     DLDNVGYTARHHTFFEMLGNFSFGDYFKEQAIAYAWEFVTEVLKLPKDRLYVTVHESD
                     DEAFELWQKHIQKERIYRFGDKDNFWQMGDTGPCGPCSEIFYDQGEEYFNGEEDYMGG
                     DGDRFLEIWNLVFMQYERSADGKLTPLPKPSIDTGMGLERVTAIKEGKFSNF"
BASE COUNT          191 a          148 c           88 g          212 t
ORIGIN      
        1 tcaaaattgc taaatttacc ctctttgata gctgtaaccc tttcaagccc cattcctgta
       61 tcaatacttg gttttggcaa aggcgtaagt ttaccatcag cacttctttc atactgcatg
      121 aaaacaaggt tccaaatttc taagaaccta tctccatctc cacccatata atcttcttcg
      181 ccattaaaat actcttcgcc ttgatcataa aaaatctcac tacaaggacc acaaggacct
      241 gtatcgccca tttgccaaaa attatcctta tcgccaaatc tataaattct ttctttttgg
      301 atatgttttt gccacaattc aaacgcttca tcatcgcttt catgtacggt tacataaagt
      361 ctatctttag gaagttttaa tacctcggtt acaaattccc aagcataagc gatagcttgt
      421 tctttaaaat aatccccaaa gctgaaattt cctaacattt caaaaaaagt atgatggcga
      481 gcggtatagc ctacattatc taaatcattg tgttttcccc ctgctcttat acaagtttgg
      541 caacttgttt tgcgtggtgg atttggacga ggcacttctc ctataaatat acttttaaaa
      601 ggcaccattc ctgcatttgt aaaaagcaag gttgcatca
//
LOCUS       DARAII010000314          634 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.365, whole genome shotgun sequence.
ACCESSION   DARAII010000314 DARAII010000000
VERSION     DARAII010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 634)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.365"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            27..>634
                     /locus_tag="SB143_002244"
     CDS             27..>634
                     /locus_tag="SB143_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEF9750718.1"
                     /translation="MKIGIIGLGKMGQNHLNELGKNKNFKINALFDMVENKNLNAPFF
                     INLDEFLNQDNDIIIIATPTNSHLEIARKVFCKCKCVLIEKPLALNLNEIDEISNLAK
                     SYGVKVGVGFCERFNPAVLALKKELQNEEIISINIQRFSTYPQRISDVGILQDLAVHD
                     LDLLHFLSAEKITNANILKSFNKDNQREDESIITCKLEKTIA"
BASE COUNT          247 a           81 c          111 g          195 t
ORIGIN      
        1 gagcttgaaa atgaaggatt tttctcttga aaataggaat tataggcctt ggaaaaatgg
       61 gacaaaacca tttaaacgag cttggtaaaa ataaaaattt taagatcaac gctttgtttg
      121 atatggttga aaataaaaat ttaaacgcgc ctttttttat taatttggat gaatttttaa
      181 atcaagataa tgacatcatc atcattgcaa caccaacaaa ttcacattta gaaatagcta
      241 gaaaggtttt ttgtaaatgt aaatgcgtat tgatcgaaaa acctttagcg ctgaatttaa
      301 atgaaataga tgaaatttca aatttagcta aaagctatgg tgtaaaagtg ggtgtgggat
      361 tttgtgaaag atttaatcct gcggttttag ctctaaaaaa agagcttcaa aatgaagaaa
      421 ttatcagcat caatatacaa agattttcca cttatccgca aagaatcagt gatgtaggaa
      481 ttttacaaga tttggctgtg catgatcttg acttgcttca ttttttaagc gcagagaaaa
      541 ttacaaatgc taacatttta aaaagtttca acaaagacaa tcaaagagaa gatgaaagca
      601 ttataacctg caagctagaa aaaacgatcg cttg
//
LOCUS       DARAII010000315          633 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.367, whole genome shotgun sequence.
ACCESSION   DARAII010000315 DARAII010000000
VERSION     DARAII010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.367"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>633
                     /locus_tag="SB143_002245"
     CDS             <1..>633
                     /locus_tag="SB143_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750719.1"
                     /translation="LRNKALYQRFNFNDFGYIDTGTHVSHFSYTLALALGFKNIIMIG
                     QDLAFDEEGNSHSKGFDFGEKFSGEENIDKFKIPAYAGKGEVLTHTTWNDYRIKLEYL
                     FACNDQKAKFYNATEGGARINFTEELSFKECCEKLLTKEKPKFELPKSLTKNRSDKLL
                     VKFKEKIQKDQENAKRFLDDALALKQILENILSKDFILPLEFLEKVYQNIE"
BASE COUNT          251 a           82 c           99 g          201 t
ORIGIN      
        1 ttaagaaata aagcccttta ccaacgcttt aactttaatg actttggcta tatagatacg
       61 ggtactcatg taagtcattt ttcttatact ttagctttgg ctttgggatt taaaaatatc
      121 atcatgatag gacaagattt agcctttgat gaagaaggaa attcacactc aaaaggtttt
      181 gattttggag agaaatttag tggtgaagaa aatatagata aatttaaaat ccctgcctat
      241 gcaggtaaag gtgaagtttt aacccataca acttggaatg attatcgtat aaaacttgaa
      301 tatctttttg cttgcaatga tcaaaaggct aaattttaca atgctactga aggtggagca
      361 aggattaatt tcactgaaga actttctttt aaagaatgtt gtgaaaaact ccttacaaaa
      421 gaaaaaccca aatttgaact tccaaaaagt ttaactaaaa atagaagtga taaactccta
      481 gttaaattca aagaaaaaat acaaaaagat caagaaaatg ctaaaagatt tttagacgat
      541 gctttagctt taaaacaaat tttagaaaat atactcagta aagattttat cttgcctttg
      601 gaatttttag aaaaagtata tcaaaacata gaa
//
LOCUS       DARAII010000316          624 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.369, whole genome shotgun sequence.
ACCESSION   DARAII010000316 DARAII010000000
VERSION     DARAII010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.369"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..213)
                     /locus_tag="SB143_002246"
     CDS             complement(<1..213)
                     /locus_tag="SB143_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEF9750720.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDA"
     gene            complement(358..>624)
                     /locus_tag="SB143_002247"
     CDS             complement(358..>624)
                     /locus_tag="SB143_002247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEF9750721.1"
                     /translation="VMDIAETAITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAE
                     SQIRDVDFAAESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ"
BASE COUNT          185 a          111 c          113 g          215 t
ORIGIN      
        1 agcatcgtta ccattgttta tagcttgacc taaagtagct gcttgtgaac gcaaagaatc
       61 tgctatagcc atccctgaag catcatctgc tgcggagtta attctaagac ctgaactaag
      121 tctgcttaaa gacttatcca gctctctagc attaacaact gaatttgcat gtgcgtttaa
      181 tgcaccgatg ttggtgttta tcctaaaacc cattttaaat cctttcaaaa tattgcatcg
      241 aaaagattaa agcaagaagt gttccaagtt tagtttgatt aaaaaatttt agagtttaaa
      301 ataaaaaagc ctagtttaaa ctaggcttgg atttgtatat attgcagctt ttgtaaacta
      361 ctgtagtaat cttaaaacat tttgctgaac agaattagcc tgtgccatgg cataagagcc
      421 actttgagct aagatatttg ctttagagta gtttgcactc tcggctgcaa agtctacatc
      481 acggatttgt gattctgctg ctttaacgtt tacttgagta acagtgatgt tgtttatagt
      541 tgatgtaact tgattttgca ctgaaccaat gtctgctctg atttgatcaa gatttgttat
      601 agccgtttca gctatatcca tcac
//
LOCUS       DARAII010000317          615 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.370, whole genome shotgun sequence.
ACCESSION   DARAII010000317 DARAII010000000
VERSION     DARAII010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.370"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..554)
                     /gene="legC"
                     /locus_tag="SB143_002248"
     CDS             complement(<1..554)
                     /gene="legC"
                     /locus_tag="SB143_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HEF9750722.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKNGFSYNKTTHKPIKACVIMHT
                     FGLSAHIKALKELCEKYRILLIEDA"
BASE COUNT          182 a          100 c          108 g          225 t
ORIGIN      
        1 gcatcttcaa ttaaaagaat gcggtatttt tcacaaagct ctttgagggc tttgatatga
       61 gcgcttaaac caaaggtgtg cataataaca caagctttga tgggtttatg tgtagttttg
      121 ttatagctaa aaccattttt ttgataagtt tgattttcta aaaaatgctc taaagcctta
      181 ggacttaaac ttagagtgtt ttcatctatg tctaaaaaaa cgggctttgc gcctgtgtaa
      241 gcgatagcat tggccgtagc gacaaagctt atgctttgag tgatgacttc gcagttttca
      301 tcgataccat tggctagtaa agcgatatga agggctgctg tgcctgtatt tgtagcgatg
      361 acaaagcgtg ctttggtttt ttcttttaaa gcttcttcaa aacgcgttac aaattctcct
      421 acgcttgaaa caaaaccgct atcgatacat tctaagagat attttttctc attgcctata
      481 aagcaaggct catgtagggc gatattttct ttattgaaaa gactttttat aaaagaaatt
      541 tctttttcaa acattataaa gttcactttt ataattttct aaattttctt taaaatactc
      601 tatactttgt cttaa
//
LOCUS       DARAII010000318          613 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.372, whole genome shotgun sequence.
ACCESSION   DARAII010000318 DARAII010000000
VERSION     DARAII010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.372"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            74..496
                     /gene="cgb"
                     /locus_tag="SB143_002249"
     CDS             74..496
                     /gene="cgb"
                     /locus_tag="SB143_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEF9750723.1"
                     /translation="MTQEQIQIIKDCVPILQKNGEDLTKEFYKIMFNDYPEVKPMFNM
                     EKQASGEQPKALAMAILMAAKNIENLENMRSFVDKIAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEIAYGKIAEFYIDIEKKLYEK"
BASE COUNT          246 a           86 c           86 g          195 t
ORIGIN      
        1 gtcaattttt ttatttagat taaaagttag aatacgctct attttaaaaa aattaagaac
       61 taaaaggaaa actatgacac aagaacaaat tcaaattatc aaagattgtg tgcctatttt
      121 acaaaaaaat ggagaagatt taacaaaaga attttataaa ataatgttta atgactatcc
      181 tgaagtaaaa cctatgttta atatggaaaa acaagcatct ggagaacaac caaaagcctt
      241 agccatggct attttaatgg cagctaaaaa tatagaaaat ttagaaaata tgagatcatt
      301 tgtggataaa attgccataa ctcatgtaaa tttaggggtt aaagaagagc attatcctat
      361 agtaggagct tgccttttaa aggctattaa aaatctttta aaccctgatg aagcaacact
      421 taaagcttgg gaaattgctt atggaaaaat cgctgaattt tatatagata tagaaaaaaa
      481 gctttacgaa aaataataaa agcccatttt cgggctttta atcaaatttc tctactaaat
      541 ttttagccaa ttctttaata ttttcaccct ttaattcgct gatatttcct ccctcggcca
      601 aaaagattct atc
//
LOCUS       DARAII010000319          613 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.373, whole genome shotgun sequence.
ACCESSION   DARAII010000319 DARAII010000000
VERSION     DARAII010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.373"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>613)
                     /gene="modA"
                     /locus_tag="SB143_002250"
     CDS             complement(<1..>613)
                     /gene="modA"
                     /locus_tag="SB143_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEF9750724.1"
                     /translation="LNAQNLSIFVASSASKAMSEVKDEFLKTHPEDKIELVFGASGKY
                     YELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVLALYSLDENLLQGGVEN
                     LKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKIVLGENISVPVLHVDSK
                     NSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKYA"
BASE COUNT          202 a          118 c           80 g          213 t
ORIGIN      
        1 ttagcgtatt ttgtgatgac ataactttgc tctaaagggc taaaatactt tgcatcaatt
       61 ataacagcct tacccttagg atgattgata gaagaaacta aagaataagc cactatagct
      121 atatctgaat ttttgctatc tacatgtaaa acaggcactg agatattttc gcctaaaacg
      181 attttatcct taagaagctc atttaaaccc aaattttcaa gcacttcttt agctgctact
      241 ccataaggag ctactttagg attggctatg cttagatgcg tgattttgtt tgccttttct
      301 tttaaatttt caacgcctcc ttggagtaaa ttttcatcca agctatacaa agccaaaact
      361 cccaaaacat aaacttttgg ttttattaaa gcatttttat catcataaat agccttagca
      421 tatttagtat ccgctgaaaa aaagagatca aattctcttc cttgttttaa aagctcataa
      481 tattttccag aagcaccaaa aaccaattct attttatctt ctggatgtgt tttcaaaaac
      541 tcatctttaa cttcactcat cgcctttgaa gctgaagaag ctacaaaaat acttaaattt
      601 tgcgcattta aac
//
LOCUS       DARAII010000320          607 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.376, whole genome shotgun sequence.
ACCESSION   DARAII010000320 DARAII010000000
VERSION     DARAII010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.376"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..368)
                     /locus_tag="SB143_002251"
     CDS             complement(<1..368)
                     /locus_tag="SB143_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002828975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEF9750725.1"
                     /translation="MRVDSLKIAKEVCAIEAKAIQDLALNLDENFSKAVELMLHTKGR
                     CIVSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPDDVLIAISNSGET
                     EEILKIIPAIKKRKIPLIAM"
     gene            complement(389..>607)
                     /locus_tag="SB143_002252"
     CDS             complement(389..>607)
                     /locus_tag="SB143_002252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide export protein"
                     /protein_id="HEF9750726.1"
                     /translation="LAGGYGERADTSKVLVIRNNGKAQKYSGSVDMMPGDSVLVLPKV
                     ESENLQIFSMLTQILYQIAVATNVVLKL"
BASE COUNT          179 a          136 c           92 g          200 t
ORIGIN      
        1 cacatagcta taagagggat tttgcgcttt ttaattgcag ggatgatttt taaaatttct
       61 tcagtttcac ctgaatttga aatagctatc aaaacatcat caggcgtaag catcccaaga
      121 tctccatgta aagcctctcc aggatggata aaaaagcttg gagttcctgt gcttgctaaa
      181 gtcgcagcta tcttagctcc tatatggccc gattttccca tgccactgac tatacaacgc
      241 ccctttgtat gaagcataag ctccacagct ttagaaaaat tttcatccaa attcaaagcc
      301 aaatcttgta tagctttggc ttctatggca caaacctctt tagctatctt taaagaatca
      361 actctcattt tcatcacctt gatttttgtt atagtttcaa caccacattt gttgcaacag
      421 caatttggta taaaatttgc gttagcatag aaaaaatttg taaattctca ctctcaacct
      481 taggcaagac taagacagaa tctcctggca tcatatcaac acttccacta tatttttgag
      541 cttttccgtt gttgcgtata acaagtactt tagaagtatc tgctctttct ccataacctc
      601 ctgcgag
//
LOCUS       DARAII010000321          603 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.377, whole genome shotgun sequence.
ACCESSION   DARAII010000321 DARAII010000000
VERSION     DARAII010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.377"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>603
                     /locus_tag="SB143_002253"
     CDS             <1..>603
                     /locus_tag="SB143_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEF9750727.1"
                     /translation="LINECYLANKDKDLLQNIKKYYKNLIQNLDFQKGFISELYAPKD
                     DDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIAPLIYEASVHSNTSGVFK
                     GFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEFEVMQKDANMLAKELDFF
                     DVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIP"
BASE COUNT          229 a           76 c           95 g          203 t
ORIGIN      
        1 actcatcaat gagtgttatc ttgctaataa agacaaagat ttacttcaaa atataaaaaa
       61 gtattataaa aatttaatcc aaaatttaga ttttcaaaaa ggttttatca gtgagcttta
      121 tgctccaaaa gatgatgatg atattaaaaa aaatgaaagg gttttttata cttttaaaaa
      181 tgctttatat cttgatacta taaggcaaaa aatcgaaaat gaaattccaa aagaattgag
      241 gcatttcttt atagctcctt tgatttatga agccagtgtt cattcaaata ctagcggagt
      301 ttttaaaggt ttttataagg gtaaggatgg catcggaaaa tttggtggcg aaggacaaaa
      361 tgcacttaaa cgcattaaag gagaaataga gcttaaaatg cctatttttt caaatttttc
      421 ttgtgaattt gaagtgatgc aaaaggatgc aaacatgctt gcaaaagaac ttgatttttt
      481 tgatgtagtg tatcttgacc ccccttataa tcagcaccct tatagttcta attattttat
      541 gctaaattta attgcaaatt ataaaaaacc tgaagaaatt tctaaaatca gtggcattcc
      601 aaa
//
LOCUS       DARAII010000322          599 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.379, whole genome shotgun sequence.
ACCESSION   DARAII010000322 DARAII010000000
VERSION     DARAII010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.379"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>599
                     /locus_tag="SB143_002254"
     CDS             <1..>599
                     /locus_tag="SB143_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEF9750728.1"
                     /translation="MSLAKKHHTKFMLLEDGFLRSLNLGVENSPSFSIVKDDVGIYYD
                     ANTPSRLENILNTYEFSPKELALAKKAIELIKKEKLSKYNNNLCIPQELFSANEERVL
                     IIAQVANDASLKFGLASDFSTQDIINDALKENPNAKIYIKIHPDVLSGKKQSDFSLQD
                     LPSRCVILKENYNPIELLSHFKKVYTKTSGMGFEALMLG"
BASE COUNT          218 a           93 c          104 g          184 t
ORIGIN      
        1 atgagtttag ctaaaaaaca tcataccaaa tttatgcttt tagaagatgg ctttttacgc
       61 tcgttaaatt taggcgtaga aaatagtccg agtttttcta tagttaaaga tgatgtgggg
      121 atttattatg acgcaaatac tccttcaaga cttgaaaata ttttaaatac ctatgagttt
      181 agccccaaag agctagcttt ggcaaaaaaa gctatagagc ttattaaaaa agaaaaactc
      241 agcaagtata ataacaatct ttgcataccc caagagcttt tcagcgccaa tgaagaacgc
      301 gttctaatca tcgctcaagt ggcaaatgac gcttcattaa aatttggctt agcgagtgat
      361 ttttcgaccc aagatatcat aaatgatgct ttaaaagaaa atccaaacgc taaaatatat
      421 atcaaaatcc atcctgatgt gctaagtggt aaaaagcaaa gtgattttag cttgcaagat
      481 ttgcccagta gatgtgtgat tttaaaagaa aattataatc ccatagaatt attaagccat
      541 tttaaaaaag tttataccaa aacttctggc atgggttttg aagctttgat gttaggatg
//
LOCUS       DARAII010000323          582 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.386, whole genome shotgun sequence.
ACCESSION   DARAII010000323 DARAII010000000
VERSION     DARAII010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.386"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>582
                     /locus_tag="SB143_002255"
     CDS             <1..>582
                     /locus_tag="SB143_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9750729.1"
                     /translation="NYLKLQGLEDYKEKDEKVNLPYIIIIDEINRGNVSKIFGELITL
                     IEASKRIGEKEELKVTLPYSGEKFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFIE
                     MMPDVSKLSMDCEGINLQELLKAINTRIEYLLDREKTIGHAFFISVENLEDLKKVFKN
                     KIIPLLQEYFYNDYALIDAVLNKNGMLEISVENK"
BASE COUNT          233 a           57 c          106 g          186 t
ORIGIN      
        1 aattatttaa aattgcaggg tttagaagat tacaaagaaa aagatgaaaa agtaaattta
       61 ccttatataa tcatcatcga tgaaatcaat cgtggtaatg taagtaagat ttttggtgag
      121 cttataacct tgatagaagc tagcaaaagg ataggtgaaa aagaagagtt aaaagtgact
      181 ttgccttata gcggtgaaaa atttggagta cctaaaaatg tttatatcat aggtactatg
      241 aatacagccg atagaagcat aacttctctt gatacagctt taagaagaag atttgaattt
      301 attgagatga tgcctgatgt gagcaaatta tctatggatt gcgaaggtat taatttacaa
      361 gaattattaa aagctataaa cactcgtata gaatatttac tagatagaga aaaaaccata
      421 ggtcatgcat tttttataag tgttgaaaat ttagaagatt taaaaaaggt ttttaaaaat
      481 aaaatcatcc cacttttgca agagtatttt tacaatgact atgctttgat tgacgcagtt
      541 ttaaataaaa atggtatgtt ggaaattagt gttgaaaata aa
//
LOCUS       DARAII010000324          574 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.388, whole genome shotgun sequence.
ACCESSION   DARAII010000324 DARAII010000000
VERSION     DARAII010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.388"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>574)
                     /gene="dnaX"
                     /locus_tag="SB143_002256"
     CDS             complement(<1..>574)
                     /gene="dnaX"
                     /locus_tag="SB143_002256"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEF9750730.1"
                     /translation="RIFSRALVCDNGPSDTPCGTCKQCLAALEGKHIDIIEMDAASNR
                     GLEDIQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATT
                     DPLKLPATVLSRTQHFRFKQIPQNEILNHLKEILNKENVKFEEEALKFVARSGNGSLR
                     DTLTLLDQAIIFCQNDISTSKITDMLGFLDP"
BASE COUNT          167 a           98 c          112 g          197 t
ORIGIN      
        1 caggatctaa aaaacccaac atatcagtaa tcttactcgt gcttatatca ttttggcaaa
       61 agataatagc ttgatcaagc aaggtaagag tatctcttaa agagccattt ccacttcttg
      121 cgacaaattt caaggcttct tcttcaaatt tgacattttc cttgtttaaa atttctttta
      181 aatgatttaa aatttcattt tgtggaattt gtttgaagcg aaaatgttgt gtccttgaaa
      241 gcacggtagc gggcaatttc aaaggatcgg tggtcgctag gataaatttc acatagcttg
      301 gaggttcttc tagtgttttt aaaagtgcat tagcagcttg aggtgttagc atatgcactt
      361 catcgatgat aaagatttta aatcttgcca tagaaggggt atatttagtt tgttcaataa
      421 gagcttgtat gtcttctagc ccgcgattgc tagcggcgtc catttctatg atgtctatat
      481 gtttaccttc aagtgcggca aggcattgtt tgcaagttcc acaaggagta tcacttgggc
      541 cattatcaca aactagagct ctagaaaaaa ttct
//
LOCUS       DARAII010000325          564 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.391, whole genome shotgun sequence.
ACCESSION   DARAII010000325 DARAII010000000
VERSION     DARAII010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 564)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.391"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..178
                     /gene="flgM"
                     /locus_tag="SB143_002257"
     CDS             <1..178
                     /gene="flgM"
                     /locus_tag="SB143_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEF9750731.1"
                     /translation="SYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQIKNGTYKI
                     DTKATAAAIADSLI"
     gene            221..>564
                     /gene="flgN"
                     /locus_tag="SB143_002258"
     CDS             221..>564
                     /gene="flgN"
                     /locus_tag="SB143_002258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FlgN"
                     /protein_id="HEF9750732.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLV"
BASE COUNT          240 a           82 c           94 g          148 t
ORIGIN      
        1 aagttatgtg gcaaataccg cattaaatac aaatagaata gataaagaaa ctaaaacaaa
       61 cgatactcaa aaaacggaaa atgataaagc gagtaaaatc gcagagcaga ttaaaaatgg
      121 tacttataaa atcgatacaa aagctacggc tgctgcgatt gctgactctt taatctaaaa
      181 accttcattc tccttttttt gagagagaaa aggagaaaat atgcttaaac aaagacttga
      241 tgaagtaaat gctatcttag caaaacttat cgctttaacc gaagaagata tagaaaatat
      301 caaagtggct aaacatgaga gtgtaacgcc aagtgtagaa gaaaaaaaca aacttatcgc
      361 ggaatttatt acagctaaaa aacaacttga tgttgccttg gttgagctaa ataatagctc
      421 tacaaaaggg cttagtgaac tcttagatga tgaagataaa caaaaactag atctacttaa
      481 aaaaaatctt caaaaccttc atagtaaaaa caaagagtat gctaaatttg ttcttattgt
      541 caaagatttt cttgatggct tagt
//
LOCUS       DARAII010000326          551 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.393, whole genome shotgun sequence.
ACCESSION   DARAII010000326 DARAII010000000
VERSION     DARAII010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.393"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>551
                     /locus_tag="SB143_002259"
     CDS             <1..>551
                     /locus_tag="SB143_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase family protein"
                     /protein_id="HEF9750733.1"
                     /translation="MALQSIKAAKKAGADAIKIQTYTPNSLTLDSDKEDFIIKGGLWD
                     KRKLYELYESAKTPYEWHSQIFETAQNEGILCFSSPFAKEDVEFLKRFDPIAYKIASF
                     EANDENFVRLIAKEKKPTIVSTGIATEEELFKICEIFKEEKNPDLIFLKCTSAYPTAI
                     EDMNLKGIASLKEKFNVEVGLSD"
BASE COUNT          208 a           92 c           93 g          158 t
ORIGIN      
        1 atggcacttc aaagcataaa agctgctaaa aaggcaggtg ctgatgcgat aaaaattcaa
       61 acctataccc ccaacagcct tactttagat agcgacaaag aagattttat catcaaagga
      121 ggactttggg acaaaagaaa actttatgag ctttatgaaa gtgcaaaaac cccttatgaa
      181 tggcattctc aaatctttga aaccgcacaa aatgaaggca tactttgttt ttcaagtccc
      241 tttgctaaag aagatgtaga atttcttaaa cgctttgatc ctatagccta taaaatcgct
      301 tcttttgaag ctaatgatga aaatttcgtg cgtttaatcg ccaaagaaaa aaaacctact
      361 atcgtttcaa cgggcattgc tacagaagaa gaacttttta aaatctgtga aatttttaaa
      421 gaagaaaaaa atcctgattt aatcttttta aaatgcactt cggcttatcc tactgccata
      481 gaagatatga atttaaaagg catagcaagt ttaaaagaaa aatttaatgt tgaagtggga
      541 ctaagtgatc a
//
LOCUS       DARAII010000327          550 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.394, whole genome shotgun sequence.
ACCESSION   DARAII010000327 DARAII010000000
VERSION     DARAII010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.394"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            115..507
                     /locus_tag="SB143_002260"
     CDS             115..507
                     /locus_tag="SB143_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750734.1"
                     /translation="MKKILTSALALGAMTLIIGCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKQYPNYKLYDYTSVRAISDIKDPEGKIKEMKRDLKIDKTPYSNYVFLLNPNDKKDY
                     KVVSVYCDKDFKKRIYCSVNDAFRFYAR"
BASE COUNT          225 a           53 c           90 g          182 t
ORIGIN      
        1 aatataatta ttaaaaaaca tataaaaaac atataaaaaa tgtatagatt aagtatatat
       61 taagtataaa aaaggtataa ttatattaat ttaattttta aaataggggt aaaaatgaaa
      121 aagattttaa caagtgcttt ggctttagga gctatgactt tgattatagg ttgtggcgat
      181 ggcgatttag tcgagttaaa aaacaatggc aacgatcaag ctatgtttga tttaggtaat
      241 caagagatta tgaaacaata tccaaattat aagctttatg attatacttc agtcagagca
      301 attagtgata ttaaagatcc agaaggtaaa atcaaagaaa tgaagcgtga tttgaaaata
      361 gataaaactc catactcaaa ctatgttttc ttattaaatc caaacgataa aaaagactat
      421 aaagttgtga gtgtttattg cgataaagac tttaagaaaa gaatttattg ttctgtgaat
      481 gatgctttta ggttttatgc aagataataa aacaagcggg aaagtcccgc tatctttcta
      541 attctttttt
//
LOCUS       DARAII010000328          549 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.395, whole genome shotgun sequence.
ACCESSION   DARAII010000328 DARAII010000000
VERSION     DARAII010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.395"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..521)
                     /locus_tag="SB143_002261"
     CDS             complement(<1..521)
                     /locus_tag="SB143_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750735.1"
                     /translation="MAGATSGNYYDSFDMASIVKSHYNSFNQVIRAFPNDKTSFSEAD
                     LEQLPKGLNYGRNENKEKIVKNIFNAEQFHEAQAIKYSTMGLDMNLMKLDFSPQSMEQ
                     DPSIEGDFNPDMSVYPQNEDGNYSKEALFMSFLKSYPPFPSSNQVVFSPEAKVREAKL
                     ELEMKANPSFSVS"
BASE COUNT          177 a           92 c           80 g          200 t
ORIGIN      
        1 aaggaaacgc taaaagaagg atttgctttc atttctagct caagttttgc ttcacgaact
       61 tttgcttcag gactaaaaac aacttgattt gaagatggaa aaggcggata ggattttaaa
      121 aaactcataa ataaagcttc tttagaataa ttcccatctt cattttgtgg ataaactgac
      181 atatcaggat taaagtcacc ttcaattgaa ggatcttgct ccatactttg tggagaaaag
      241 tcaagtttca taaggttcat atccaaaccc atagtagaat atttaatcgc ttgtgcttcg
      301 tgaaattgtt ccgcattaaa tatatttttt acaatttttt ctttgttttc attacgacca
      361 taatttagtc cttttggcaa ttgctctaaa tctgcttcgc taaaacttgt tttatcattt
      421 ggaaatgctc ttattacttg attaaaacta ttataatggg atttaacaat agaagccata
      481 tcaaaactat cataatagtt tccactggtt gcaccagcca tattatgttg attaaatctt
      541 tctatctca
//
LOCUS       DARAII010000329          545 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.396, whole genome shotgun sequence.
ACCESSION   DARAII010000329 DARAII010000000
VERSION     DARAII010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.396"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>545
                     /locus_tag="SB143_002262"
     CDS             <1..>545
                     /locus_tag="SB143_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEF9750736.1"
                     /translation="KITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYV
                     IDKYGADKVAQVITFGKLLARGVIRDVARVCDMSIPDADELAKLIPEELKITLDAAYE
                     KEPKIKEFIERHPKGPEVWEYAKALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKN
                     DERHLVTQYSKDHLEDVDLIK"
BASE COUNT          174 a           80 c          123 g          168 t
ORIGIN      
        1 aaaatcacgg atttagatcc tattccttat agtttgcttt ttgagcgttt tttaaatcca
       61 gaacgcgtat cgatgcccga tattgatgtg gatttttgtc aagatagacg cgcagaagtg
      121 attgattatg tgattgataa atacggagcc gataaggttg cacaggttat tacttttggt
      181 aagcttttgg ctcgtggagt gattcgtgat gtggcaaggg tttgtgatat gagtattcct
      241 gatgcagatg aacttgccaa gcttatacct gaagaactta aaatcactct tgatgcagct
      301 tacgaaaaag aaccaaagat taaagaattt atagagcgtc atccaaaggg tcctgaagtt
      361 tgggagtatg ctaaggctct tgaaggactc aatagaaatg caggtatgca cgcagcaggt
      421 gttgtgattt ctaatgaaag tttatggaaa aaaactcctc tttttagaca gagtaaaaac
      481 gatgaaagac atttagttac acaatactct aaagatcatt tagaggatgt agacttaatc
      541 aaatt
//
LOCUS       DARAII010000330          541 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.399, whole genome shotgun sequence.
ACCESSION   DARAII010000330 DARAII010000000
VERSION     DARAII010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.399"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>541
                     /locus_tag="SB143_002263"
     CDS             <1..>541
                     /locus_tag="SB143_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEF9750737.1"
                     /translation="ITFFGSARLKEDSFYYQEAKKLASLCVENGFCVVSGGGGGIMRA
                     ANAGAAKCKNDANFIKSVGFNILLPFEQKLNDFVEYNITFESLAIRKMALIEKSLAFV
                     IFPGGFGTLDELCEVLTLKQLGFKSNVPIILLGSEFWQGFDEFVRNSLLKLEVISKGD
                     ELKYEITDDLDYIINTLKEL"
BASE COUNT          175 a           73 c          112 g          181 t
ORIGIN      
        1 ataacttttt ttggttctgc aagattaaaa gaagatagtt tttattatca agaagccaaa
       61 aaattagcta gtttatgtgt agaaaatggc ttttgtgtcg ttagcggcgg aggtggaggc
      121 attatgcgtg cagctaatgc aggcgctgct aaatgtaaaa acgatgcaaa ttttataaaa
      181 tcggtaggtt ttaatatact tttgcctttt gagcaaaaat taaacgattt tgtagaatat
      241 aacataactt ttgagagctt agccatacgc aaaatggctc ttattgaaaa gagtctagct
      301 tttgtgattt tcccaggcgg ctttggaaca cttgatgaat tgtgtgaagt gcttacacta
      361 aaacaacttg gatttaaaag caatgttcct attatcttgc ttgggagtga attttggcaa
      421 ggctttgatg agttcgtcag aaattctttg ctaaaacttg aagtcatttc caaaggagac
      481 gagttaaagt atgaaatcac tgacgattta gattatataa tcaatacttt aaaggaactc
      541 t
//
LOCUS       DARAII010000331          541 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.400, whole genome shotgun sequence.
ACCESSION   DARAII010000331 DARAII010000000
VERSION     DARAII010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.400"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>541
                     /gene="groEL"
                     /locus_tag="SB143_002264"
     CDS             <1..>541
                     /gene="groEL"
                     /locus_tag="SB143_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; many bacteria have multiple
                     copies of the groEL gene which are active under different
                     environmental conditions; the B.japonicum protein in this
                     cluster is expressed constitutively; in Rhodobacter,
                     Corynebacterium and Rhizobium this protein is essential
                     for growth; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEF9750738.1"
                     /translation="IQKSFGAPSITKDGVSVAKEVELKDSLENMGASLVREVASKTAD
                     QAGDGTTTATVLAHAIFKEGLRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDK
                     KEIAQVATISANSDEKIGNLIADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGY
                     LSPYFITNAEKMTVELSNP"
BASE COUNT          207 a           80 c          115 g          139 t
ORIGIN      
        1 taatccaaaa aagctttggt gctccaagca ttactaaaga tggcgtaagt gttgctaaag
       61 aagtagagct taaagatagt cttgaaaata tgggtgcttc actcgtaaga gaagtagcga
      121 gtaaaacagc tgatcaagca ggcgatggaa caactactgc aacggtttta gctcatgcaa
      181 ttttcaaaga aggtttaaga aatatcacag caggtgcaaa tcctatcgaa gtaaaacgcg
      241 gtatggataa ggcttgcgaa gctatagtag cagaacttaa aaaactttct cgcgaagtaa
      301 aagataaaaa agaaattgca caagttgcta caatttcagc caactctgat gaaaaaatcg
      361 gaaatttaat tgctgatgct atggaaaaag taggcaaaga tggtgttatc actgttgaag
      421 aggcaaaatc aatcaatgat gaattaaatg tagttgaagg tatgcaattt gacagaggtt
      481 atttaagccc ttattttata accaatgcag aaaaaatgac ggtagaactt tcaaatcctt
      541 a
//
LOCUS       DARAII010000332          537 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.403, whole genome shotgun sequence.
ACCESSION   DARAII010000332 DARAII010000000
VERSION     DARAII010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.403"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            1..537
                     /locus_tag="SB143_002265"
                     /pseudo
     CDS             1..537
                     /locus_tag="SB143_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="frameshifted; incomplete; missing N-terminus and
                     C-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
BASE COUNT          186 a           94 c           92 g          165 t
ORIGIN      
        1 cccgatgcta ttccttatgt aacgagttat tacaaaagac gttggggatt ttgtctcacg
       61 cataatgaaa gaaaaaaact caaaaaaggc aaatacaaag tctatatcaa tgcgaaacat
      121 gatgaaaatg gggttttgga ttatgctgat tttatcctac ctagtacgca aaattcaaaa
      181 gatgaaattt taatttcaac ctaatctttg tcatccttcc atggcaaata atgagcttag
      241 tggccctgtg gtggctattt tcctagcaaa atggcttttg agtttaaaag aaagaaaata
      301 taattaccgc tttgtcatca tccctgaaac catagggtct atagtctatc ttagcaaaca
      361 tttagagcat ttaaaaaaat atgttaaagc aggctttgtg ctttcttgct taggcgatga
      421 tcatgcttac tcactcatac acacacccaa agaaaacact ctaagcgata aagttgcctt
      481 gcatacgctt aaaaataaag aaaatttcaa agcttttagt tttttggatc gtggaag
//
LOCUS       DARAII010000333          537 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.404, whole genome shotgun sequence.
ACCESSION   DARAII010000333 DARAII010000000
VERSION     DARAII010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 537)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.404"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(25..>537)
                     /locus_tag="SB143_002266"
     CDS             complement(25..>537)
                     /locus_tag="SB143_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEF9750739.1"
                     /translation="VAPFIVWFFSLFGIQASFQSALGAGFIMGIMIVPIVASLSQDCI
                     EAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLLGLSRALGETMIVVMAASL
                     RPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSLGLVLFVITLIINMFSVYL
                     INRFHKRKNL"
BASE COUNT          192 a          114 c           78 g          153 t
ORIGIN      
        1 tttgtctttt tttaaaaagt tttttcataa atttttcctt ttgtgaaagc ggttgataag
       61 ataaacgcta aacatattga tgattaaagt gatgacaaaa agcaccaaac ctaaagaaaa
      121 ggcgcttaaa gctaaagaac tatcaaaagc ttgatcccca cttaaagctt ctacgatttt
      181 taccgttacc gttgtcatat cttctaaaaa atttaaagtt aaatttggac gcaaagaagc
      241 tgccatcacc actatcatag tttcgcctaa ggctcttgaa agtcctaaaa gacaagctgc
      301 aactatacca ggaatagcct caggtaaaat cacggcaaaa accacttctt tttttgtcat
      361 acctaaagca taagcgccat taatcctttt ttcactcact gcttcgatac aatcttgaga
      421 taaagaagcc actataggca ctatcatgat ccccatgata aatcccgcgc ctaaagcact
      481 ttgaaagctt gcttgtatgc caaataaaga aaaaaaccac actataaaag gcgctac
//
LOCUS       DARAII010000334          535 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.405, whole genome shotgun sequence.
ACCESSION   DARAII010000334 DARAII010000000
VERSION     DARAII010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.405"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>535
                     /locus_tag="SB143_002267"
     CDS             <1..>535
                     /locus_tag="SB143_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEF9750740.1"
                     /translation="SIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYL
                     TRKLIDVAQNVKITVEDCGTHEGVEINEITADSSIIETLEERILGRVIAEDVIDPITN
                     SVLFTEGTLMDEEKARILGESGVKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPG
                     EAVGIISAQSIGEPGTQL"
BASE COUNT          182 a           80 c          120 g          153 t
ORIGIN      
        1 tcgatcatcg aaacgcctat tatttcaaat ttccgtgaag gtttgaatgt tcttgagtat
       61 tttatctcaa ctcacggggc tagaaaaggt ttggcagata ccgctcttaa gacagcgaat
      121 gcgggttatt tgacaagaaa acttatcgat gtagcacaaa atgtaaaaat tactgttgaa
      181 gattgtggca cacacgaagg tgttgaaatc aatgagatca ctgcagatag ttctattata
      241 gaaaccttgg aagaaagaat tttaggcagg gttatagctg aagatgtaat cgatcctatt
      301 acaaattctg tgctttttac agaaggtact ttaatggatg aagaaaaagc cagaatatta
      361 ggagaaagcg gtgtaaaaag tgtaaatatt cgcactccaa tcacttgtaa ggctaaaaaa
      421 ggaatttgtg caaaatgtta cggaattaac ctaggtgaag gtaagcttgt taaaccaggt
      481 gaggcagtag gtatcatttc tgctcagtct attggtgaac caggaactca gctta
//
LOCUS       DARAII010000335          528 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.408, whole genome shotgun sequence.
ACCESSION   DARAII010000335 DARAII010000000
VERSION     DARAII010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.408"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..456
                     /locus_tag="SB143_002268"
     CDS             <1..456
                     /locus_tag="SB143_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEF9750741.1"
                     /translation="VAFAALLGIDDFRKDALATALHAYFLQKAYPHAEISISVPRLRP
                     IINNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERVGFRDEIVKLGATKMSAG
                     VSVGIGEHKGEKKGDGQFEISDERGVDEILAMLKNSNLQAVMSDSIYVG"
     gene            446..>528
                     /locus_tag="SB143_002269"
     CDS             446..>528
                     /locus_tag="SB143_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEF9750742.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQVEKLA"
BASE COUNT          180 a           74 c          117 g          157 t
ORIGIN      
        1 gtagcttttg cagcactttt ggggattgat gattttagaa aagatgcact tgcaacagct
       61 cttcatgcgt attttttaca aaaggcttat ccgcatgctg aaatttctat ttcagtacct
      121 cgtttaagac ctattatcaa taatgctaaa attcacccta aagatgtaag tgaaaaacgc
      181 ctcttgcaag tactttgtgc ttatagactt tttttacctt ttgcaggtat tactatatca
      241 agtcgtgaaa gagtaggatt tagagatgag attgtaaaac ttggagcgac aaaaatgagc
      301 gcaggagtaa gcgtgggtat aggagagcat aagggcgaga aaaaaggtga tggacaattt
      361 gaaatttcag atgaacgagg cgtggatgaa attttagcta tgcttaaaaa ctcaaatttg
      421 caagctgtga tgagcgatag tatctatgtg ggataaaaaa atcattgcta taagcgatag
      481 aaaatgtgtc gagatagact ttctaaaaca agtagaaaag cttgctaa
//
LOCUS       DARAII010000336          521 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.409, whole genome shotgun sequence.
ACCESSION   DARAII010000336 DARAII010000000
VERSION     DARAII010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.409"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            52..>521
                     /locus_tag="SB143_002270"
     CDS             52..>521
                     /locus_tag="SB143_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEF9750743.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIAL"
BASE COUNT          195 a           87 c           95 g          144 t
ORIGIN      
        1 aaagaaagat caaccaaact ttgcggtgca ggacttttaa aaggataaaa aatgttaatg
       61 tcttatgaag aaagtttaaa aattttacac tctcatatta aaacctatga aaagattgaa
      121 aaaatagccc ttacagagtg tttaggacgc attttagctc aagacataaa agcccctaaa
      181 aatcagcctg aatttccaac ctcggctatg gatggttatg cgatcaaatt tgaagatcaa
      241 gacaagcctt taaaaatttt aggtctcaca cctgcgggta ctatgccaca atttagcgtg
      301 caaaatggca cttgtgtaaa aacctttaca ggttcactca tgagcgaagg aagtgatact
      361 ttagtccctg ttgaaaatat acgcgtagaa aatgatactc tttttataga aaaaaaagtt
      421 ccccaagctt ttgccgtgcg tgcggtagga gaaaactata aaaaagatga aattttactc
      481 aaaaaaggca caaggttaaa ttatagtgag atagctcttt t
//
LOCUS       DARAII010000337          521 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.410, whole genome shotgun sequence.
ACCESSION   DARAII010000337 DARAII010000000
VERSION     DARAII010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.410"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..312)
                     /locus_tag="SB143_002271"
     CDS             complement(<1..312)
                     /locus_tag="SB143_002271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEF9750744.1"
                     /translation="MKNVITFGTFDLFHYGHLRILERASELGDRLIVGVSSDMLNFSK
                     KGRKPICSENERMKIISALKCVNEVFLEESLELKEKYINRYQADILVMGDDWKGKFDC
                     FN"
     gene            complement(312..>521)
                     /locus_tag="SB143_002272"
     CDS             complement(312..>521)
                     /locus_tag="SB143_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEF9750745.1"
                     /translation="LRRALKANDKPRFDFKAKEIMSINPKVVDANAMASEAEEIMLKY
                     KIKEIVVSKEDKVVGIIQLYAIGRV"
BASE COUNT          169 a          112 c           47 g          193 t
ORIGIN      
        1 attaaaacaa tcaaattttc ccttccaatc atcacccatt accaaaatat cagcttgata
       61 tctattaatg tatttttctt taagttctaa agactcttct aaaaaaactt cattaacaca
      121 ctttaatgct gaaataattt tcattctttc attttcacta caaataggtt ttcttccttt
      181 ttttgaaaaa tttaacatat ccgaagaaac acctacgata agcctatcgc ctaactcgct
      241 agctctttct aaaatcctta aatgaccgta atgaaataaa tcaaaagttc caaaagttat
      301 tacatttttc actataccct ccctatcgca taaagctgta tgatacctac tactttatct
      361 tctttagaaa caacaatttc tttgatttta tactttagca tgatctcttc tgcttcactt
      421 gccatagcat tagcatcgac tactttagga tttatactca tgatctcttt agctttaaaa
      481 tcaaatcttg gtttatcatt agcctttaaa gcgcggcgca a
//
LOCUS       DARAII010000338          520 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.411, whole genome shotgun sequence.
ACCESSION   DARAII010000338 DARAII010000000
VERSION     DARAII010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.411"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>520)
                     /locus_tag="SB143_002273"
     CDS             complement(<1..>520)
                     /locus_tag="SB143_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004289220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEF9750746.1"
                     /translation="DFNNEFFLVEDGFLRSVFLGSDLTRPFSLIVDSKGLYVDPNHPS
                     DLEELLQNHEFDDTLRQRAKKLITTITQNKFSKYNGLKHEKLDFNTNKKIILIPAQVE
                     DDASMILGGAGFDTLKLLQSVRAANKDAFIVFKPHPDVLSGNRKGLKDKDIILKYCDE
                     IIEDVSIDSAINA"
BASE COUNT          158 a           95 c           89 g          178 t
ORIGIN      
        1 atgcgtttat agcgctgtct atgctgacat cttctatgat ctcatcgcag tattttaaaa
       61 tgatatcttt atcctttaaa cccttgcgat ttccacttaa aacatcagga tgaggcttaa
      121 aaacgataaa ggcgtcttta tttgcagctc ttacgctttg caaaagcttt aaggtgtcaa
      181 aacctgctcc acctaagatc atcgaagcat catcttctac ttgagcgggg atgagaatga
      241 tttttttatt tgtattaaag tcaagttttt catgctttag gccgttgtac tttgaaaatt
      301 tattttgtgt tatggtagtg atgagctttt tggctctttg tcttaaagta tcatcaaatt
      361 catgattttg taaaagctct tctaaatcgc tagggtgatt aggatctaca tacaaaccct
      421 tgctatctac tatcaaagaa aaagggcgtg taaggtctga acccaaaaaa accgagcgca
      481 aaaagccatc ttctactaaa aaaaattcat tgttaaaatc
//
LOCUS       DARAII010000339          516 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.412, whole genome shotgun sequence.
ACCESSION   DARAII010000339 DARAII010000000
VERSION     DARAII010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.412"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>516
                     /locus_tag="SB143_002274"
     CDS             <1..>516
                     /locus_tag="SB143_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEF9750747.1"
                     /translation="GLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSEIMKKRAAMV
                     GADFEMIDVRNSYLQDVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKEENASFIITG
                     EVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWVDREKLEGIS
                     GRSRKRQLELAS"
BASE COUNT          180 a           78 c          116 g          142 t
ORIGIN      
        1 gggcttgata gtatgcttgc aatgaaactc atcactgcac aaggcataga agttaaagct
       61 ctaaatatca acataggttt tggaagcaca agtgataaaa gtgaaatcat gaaaaagcgt
      121 gctgcaatgg taggtgcaga ttttgaaatg atagatgtaa gaaattccta tcttcaagat
      181 gtgcttttta atccacaata tggctatggc aaacatttta atccttgtat agattgtcat
      241 gcttttatgt ttaaaaccgc acttgcaatg ttaaaagaag aaaacgcaag ttttatcatc
      301 acaggagaag ttttaggaca acgccctatg agtcaaagaa gtgatgcgat ggctaaggtt
      361 aaaaagctgg ctttagatga ggaggattta atacttcgcc ctatgtgtgc aaaaaatttg
      421 cctttaacca agcctgaaag agaaggttgg gtggatagag aaaagcttga aggcattagc
      481 ggaagaagtc gcaaaagaca acttgaactt gcttct
//
LOCUS       DARAII010000340          516 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.413, whole genome shotgun sequence.
ACCESSION   DARAII010000340 DARAII010000000
VERSION     DARAII010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.413"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..144
                     /locus_tag="SB143_002275"
     CDS             <1..144
                     /locus_tag="SB143_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750748.1"
                     /translation="LPLIAVTSRTSKTDRLRGVEVGMTEYITKPYSPEYLENVVRKNL
                     KLG"
     gene            149..>516
                     /locus_tag="SB143_002276"
     CDS             149..>516
                     /locus_tag="SB143_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEF9750749.1"
                     /translation="MSNEKLEQILQKQQTQIAGPVGDQKEDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFNLGSSKMTPQTRYI
                     VLRGESNGSGVGGNAGFVID"
BASE COUNT          180 a           71 c          111 g          154 t
ORIGIN      
        1 ttaccgctca ttgcagttac ttcaagaaca agcaaaactg atcgtctaag aggtgttgaa
       61 gtaggtatga cggaatacat taccaaacct tattctccag aatatttgga aaatgtggtt
      121 agaaaaaatt tgaaactagg ataagaatat gagtaatgaa aaattagagc aaatattgca
      181 aaagcagcaa actcagatag ctggtcctgt tggtgatcaa aaagaagatg atatcataca
      241 acttgtaggt tttgtcgtag gagatgagga atatgctatt ccaattctta acatacaaga
      301 aatcatcaaa cctatagaat atacaagggt tccaagcgtt cctgattatg ttttgggtgt
      361 atttaatatg cgtggaaatg ttatgccatt aattgatttg gcacagcgtt ttaatctagg
      421 aagttctaaa atgactcctc aaactcgtta tattgtttta agaggcgaat ccaatggaag
      481 tggtgttgga ggaaatgcgg gctttgtaat agatag
//
LOCUS       DARAII010000341          512 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.416, whole genome shotgun sequence.
ACCESSION   DARAII010000341 DARAII010000000
VERSION     DARAII010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 512)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.416"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..132)
                     /locus_tag="SB143_002277"
     CDS             complement(<1..132)
                     /locus_tag="SB143_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QacE family quaternary ammonium compound efflux
                     SMR transporter"
                     /protein_id="HEF9750750.1"
                     /translation="MKERIMNTNIAWFMVIFGGLIECFWVSGLKYSTEIWHYILTAIG
                     "
     gene            250..>512
                     /locus_tag="SB143_002278"
     CDS             250..>512
                     /locus_tag="SB143_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25"
                     /protein_id="HEF9750751.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVND
                     FIKEVRKKTTLAFDVKVGSQTLNVVVVDYQKDPVTAELKHVDL"
BASE COUNT          203 a           78 c           82 g          149 t
ORIGIN      
        1 cccaatggct gttaaaatat agtgccaaat ttctgtagaa tatttaagtc cacttaccca
       61 aaagcattct ataagcccac caaaaataac cataaaccac gcgatattgg tattcattat
      121 gcgctcctta atattttttg cgcggcaatt ataaccaaaa caaagtaaat aaaaaactac
      181 cataaattta cttttaccta agccaagatt agatacaatt ataagcttat tttttaagaa
      241 aggaaaaaga tgttagaagg tatcgttaga gagagtatcg gtagaaaagc ggctaaagct
      301 ttaaaaagag atggttatct aatcgcaaac atctatggaa aaggattaga aaacatcaat
      361 gctgctttca aagtaaatga ttttatcaaa gaagttcgca aaaaaacaac tttagctttt
      421 gatgtaaaag taggttcgca aactttaaat gttgttgtag tggattatca aaaagatcct
      481 gtaactgcag aacttaaaca tgtggattta aa
//
LOCUS       DARAII010000342          507 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.419, whole genome shotgun sequence.
ACCESSION   DARAII010000342 DARAII010000000
VERSION     DARAII010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 507)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.419"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..497
                     /gene="pfs"
                     /locus_tag="SB143_002279"
     CDS             <1..497
                     /gene="pfs"
                     /locus_tag="SB143_002279"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEF9750752.1"
                     /translation="KFGAQVLLFTGVAGAFNPELEIGDLLYATKLAQYDLDITAFGHP
                     LGFVPGNEIFIKTDDKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKAKIREIFN
                     ADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKISANFVLKM
                     CEKL"
BASE COUNT          164 a           65 c          109 g          169 t
ORIGIN      
        1 aaaaatttgg cgcgcaagtt ttacttttta caggagttgc aggtgctttt aatcctgaac
       61 ttgaaattgg tgatttgctt tatgcaacaa aattagctca atatgatctt gatatcactg
      121 cttttggaca tcctttgggt tttgttccag gaaatgaaat ttttataaag acagacgata
      181 aattaaacaa tcttgcttta gaagtcgcaa aagaattaaa tatcaaactt cgtgcaggta
      241 ttatcgcaac gggtgatgaa tttatttgtg atgaggcaaa gaaagcaaaa atcagagaaa
      301 ttttcaatgc ggatgcttgt gaaatggaag gcgcaagtgt ggctttagtg tgcgatgctt
      361 taaaggtgcc ttgttttatc ttaagagcta tgagtgataa agccggcgaa aaggctgaat
      421 ttgattttga tgaatttgtg atcaattcag ctaaaatttc agccaatttt gtacttaaaa
      481 tgtgtgagaa attatgataa atcttag
//
LOCUS       DARAII010000343          506 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.420, whole genome shotgun sequence.
ACCESSION   DARAII010000343 DARAII010000000
VERSION     DARAII010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.420"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>506)
                     /locus_tag="SB143_002280"
     CDS             complement(<1..>506)
                     /locus_tag="SB143_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEF9750753.1"
                     /translation="AYVKTNIQKYRQKEISQIVLEAKIAKKNEALGFCLVTAGLGLDD
                     EKLEYVCKAAHAVQKEVPNLLLIACNGMASVEQLKELKKAGIFSYNHNLEASKEFFPQ
                     ICTTHTWESRFQTNLNAKEAGLMLCCGGIYGMGESEEDRISMRKSLQELQPFSTPINF
                     FIANENLK"
BASE COUNT          153 a           97 c           69 g          187 t
ORIGIN      
        1 aattttaaat tttcatttgc aatgaaaaaa ttaataggcg ttgaaaaagg ttgcaattct
       61 tgcaatgatt ttctcatact tatcctatcc tcttcactct cacccatacc ataaattcca
      121 ccacaacaaa gcataagtcc tgcttctttg gcatttaaat tggtttgaaa tctactttcc
      181 caagtatgag tggtgcaaat ttgtggaaaa aattcttttg aagcttcaag attgtgatta
      241 taagaaaaaa ttcctgcttt tttaagctct tttaattgct ccacacttgc cataccatta
      301 caggctataa gaagtaaatt aggcacttct ttttgtactg catgtgctgc tttgcaaaca
      361 tattcgagtt tttcatcatc aagtccaagg cctgctgtaa ccaaacaaaa acccaaagct
      421 tcatttttct tagctatctt ggcctctaaa acaatttgtg aaatttcttt ttgacggtat
      481 ttttgtatat ttgtttttac ataagc
//
LOCUS       DARAII010000344          506 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.421, whole genome shotgun sequence.
ACCESSION   DARAII010000344 DARAII010000000
VERSION     DARAII010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 506)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.421"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>506
                     /locus_tag="SB143_002281"
     CDS             <1..>506
                     /locus_tag="SB143_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750754.1"
                     /translation="HGIKPDYVLSLERIPLTSEFFNNDFGEFDRDVLFVCVSWVYPQT
                     IKYLQKNNRNFMLISRPSDFIKNINFHQYGYVGYGPSVAHMAYEFATHLNYKNIIFIG
                     QDLAYAKDGFSHTKDYSNLDKHEGHFQRDKGKFQCLAYGGNGKVESSEIWTMFRFSLQ
                     NTISKNIVS"
BASE COUNT          171 a           67 c           86 g          182 t
ORIGIN      
        1 catggtataa agcctgatta tgtgctttct ttggaaagga ttcctttaac ttctgaattt
       61 tttaacaatg attttgggga atttgatagg gatgttttgt ttgtttgtgt aagttgggtt
      121 tatccacaaa ctataaaata tcttcaaaaa aataatagaa atttcatgct tatttcaaga
      181 ccttctgatt tcattaaaaa tattaatttt catcaatatg gctatgtagg ctatgggcca
      241 agcgttgcac atatggctta tgaatttgca actcatctaa actataaaaa tatcattttc
      301 ataggacaag atttagctta tgctaaagat ggattttctc ataccaaaga ttatagcaat
      361 cttgataaac atgaaggaca ttttcaaaga gataagggaa aatttcaatg tctagcctat
      421 ggaggcaacg gaaaggttga aagctctgaa atttggacta tgtttagatt ttctttacaa
      481 aataccattt cgaaaaatat tgtttc
//
LOCUS       DARAII010000345          505 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.424, whole genome shotgun sequence.
ACCESSION   DARAII010000345 DARAII010000000
VERSION     DARAII010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.424"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>505)
                     /locus_tag="SB143_002282"
     CDS             complement(<1..>505)
                     /locus_tag="SB143_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HEF9750755.1"
                     /translation="KNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGRGVGMDV
                     VKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLASVLETV
                     RVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVAESKLGI
                     IVDTLVG"
BASE COUNT          157 a          110 c           73 g          165 t
ORIGIN      
        1 tgtcctacaa gagtatctac tataatacca agcttgcttt ctgctacccc tataacaacg
       61 acataagttt gatcaccgct ttcaagcact tgtttaactc caaagacatc agaaagtctt
      121 acaagagaaa gtacttcatc tctaaggcgc aatacatttt tgccttcaat agtgtaaata
      181 tcatcaattg gcactctaac tgtttcaaga acgcttgcaa gtggaattgc atagaattcc
      241 tcttgagttc ctacaagtaa agattgaatg attgccaagg taagaggaat tttaagttta
      301 aacgaacttc ctttacctaa ctcactatca atttcaatta ccccattaag tttttcgatg
      361 ttggttttaa caacatccat tcctacgcca cgacctgaaa catttgttac tttagccgca
      421 gttgaaaaac caggcttgaa aatcaaagca aaagcttctt tgtctgtcat ttgatctgct
      481 tctctttcgg taatcaaatt ctttt
//
LOCUS       DARAII010000346          498 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.428, whole genome shotgun sequence.
ACCESSION   DARAII010000346 DARAII010000000
VERSION     DARAII010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.428"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>498
                     /locus_tag="SB143_002283"
     CDS             <1..>498
                     /locus_tag="SB143_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HEF9750756.1"
                     /translation="DDTHTEAILHASAILTPLCLSYGFHVSQDAKKIIKAFIIGWEIA
                     ARVGIASKGTFHKRGFHTTAIAGIFGSVSASAILLDLNKEQIINALGLAGSFASGVNE
                     FLSNGSNSKVLHIANAIKNGIMVAHFAKNNMSGPLSIFEGRDNIFKCFGIEEECDKTE
                     LNKALG"
BASE COUNT          165 a           72 c          105 g          156 t
ORIGIN      
        1 gacgatacgc atacagaagc gattttgcat gcaagtgcga ttttaactcc actttgttta
       61 agttatggtt ttcatgttag ccaagatgcg aaaaaaatca tcaaagcttt tataataggc
      121 tgggaaattg cagctagagt aggcattgca agcaaaggca cttttcataa gcgtggtttt
      181 cataccactg ctattgcagg aatttttgga agtgtgagtg caagtgcaat cttactagat
      241 cttaacaaag aacaaatcat caatgcttta ggacttgcag gaagttttgc aagtggggtt
      301 aatgagtttt tatccaatgg atctaattca aaagttttac atattgccaa tgctattaaa
      361 aacggtatta tggtagctca ttttgccaaa aacaatatga gtggaccttt gagtattttt
      421 gaaggtagag acaatatctt taaatgtttt ggtatagagg aagaatgcga taaaacagaa
      481 cttaacaaag ccttaggt
//
LOCUS       DARAII010000347          497 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.429, whole genome shotgun sequence.
ACCESSION   DARAII010000347 DARAII010000000
VERSION     DARAII010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 497)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.429"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>497
                     /gene="carB"
                     /locus_tag="SB143_002284"
     CDS             <1..>497
                     /gene="carB"
                     /locus_tag="SB143_002284"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="four CarB-CarA dimers form the carbamoyl phosphate
                     synthetase holoenzyme that catalyzes the production of
                     carbamoyl phosphate; CarB is responsible for the
                     amidotransferase activity; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbamoyl phosphate synthase large subunit"
                     /protein_id="HEF9750757.1"
                     /translation="ESILSIIKKEKIDAILPTMGGQVALNVAMEVYESGLLGDVKFLG
                     ANPEAIKKGEDRQVFKECMKKIDMDLPKSMYAYNYDEALKAVDEIGFPLMIRASYTLG
                     GTGSGVVYNMDEFKELANAALALSPIHEILIEESLLGWKEYEMEVIRDKNDNCIIVCS
                     IENLD"
BASE COUNT          165 a           64 c          115 g          153 t
ORIGIN      
        1 ggaaagtatt ttaagcatta ttaaaaaaga gaaaatcgat gccattttgc caactatggg
       61 tggacaagta gcgttaaatg ttgctatgga agtttatgaa agtgggcttt taggcgatgt
      121 gaagttttta ggtgcaaacc ctgaagcgat taaaaaaggc gaagatcgtc aagtttttaa
      181 agaatgtatg aaaaaaatcg acatggattt accaaaatct atgtatgcgt ataattatga
      241 tgaagctcta aaagctgtgg atgaaatcgg ctttccttta atgatccgtg cttcttatac
      301 cttaggtggt acgggaagcg gtgtggttta caatatggat gaatttaaag aactcgctaa
      361 tgctgcttta gcactctcgc caatccatga aattcttatc gaagaaagtt tgcttggatg
      421 gaaagagtat gaaatggaag ttatccgtga taagaatgat aattgcatta tcgtgtgtag
      481 tatagaaaat cttgatc
//
LOCUS       DARAII010000348          488 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.432, whole genome shotgun sequence.
ACCESSION   DARAII010000348 DARAII010000000
VERSION     DARAII010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.432"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>488)
                     /locus_tag="SB143_002285"
     CDS             complement(<1..>488)
                     /locus_tag="SB143_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750758.1"
                     /translation="HGIKPDYVCMLERTEITAEFFNHDFGEFDKDIVFICAGVVHPKA
                     IEYLKGRNLVITQKVLAFPYYINLKDFSYAAVEFSVAHMSYFLSVLLNHKNIIFIGQD
                     LAYAENGNSHPDDYQNSANYESQMYKHILTEAYGGKKEIKTHEVWIFFKQILEAMIIK
                     YH"
BASE COUNT          180 a           82 c           61 g          165 t
ORIGIN      
        1 atgtgatact taataatcat tgcttctagg atttgtttaa aaaatatcca aacttcatga
       61 gttttaattt cttttttccc accataagcc tcggttaaaa tatgtttata catttgactt
      121 tcataattag ctgaattttg ataatcatca ggatgagaat tgccattttc agcataagct
      181 aaatcctgtc ctataaaaat gatgttttta tgattgagta gaaccgaaag aaaatatgac
      241 atatgtgcaa cgctaaattc tacagcagca taagaaaaat ctttaagatt tatataatat
      301 ggaaaagcaa gaactttttg agttatgact aaatttctac cctttaaata ctcaatcgcc
      361 tttggatgaa caacaccagc acaaataaat acaatatcct tatcaaattc cccaaagtca
      421 tgattaaaaa actcagcagt aatttcagtt ctttctagca tacaaacata atcaggtttt
      481 ataccatg
//
LOCUS       DARAII010000349          477 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.435, whole genome shotgun sequence.
ACCESSION   DARAII010000349 DARAII010000000
VERSION     DARAII010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.435"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>477)
                     /locus_tag="SB143_002286"
     CDS             complement(<1..>477)
                     /locus_tag="SB143_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750759.1"
                     /translation="EGIIPDYVLNIDFEDLPLRFFQNKENKTSLNMLSCATHPSLVRV
                     LDNKSVILRDDPLYQRFNLNDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDE
                     KGNSHSKGFALGERIDHTLNLPTLQVPAYAGKGEVLTHIAWNDYRIKLEYLFACNE"
BASE COUNT          171 a           79 c           71 g          156 t
ORIGIN      
        1 gttcgttgca agcaaaaagg tattctaatt ttatacgata atcattccaa gcaatatgag
       61 ttaaaacttc acctttacct gcataggcag ggacttgtaa agttggtaaa ttaagagtat
      121 ggtctatcct ttcacccaaa gcaaaacctt ttgagtgtga atttcctttt tcatcaaaag
      181 ctaaatcttg tcctatcatg ataatatttt taaatcctaa agccaaagct aaagtataag
      241 aaaaatgact cacatgagta cctgtatcaa tatagccaaa gtcattaaga ttgaagcgtt
      301 ggtataaagg atcatctctt aaaatcacac ttttattatc tagtacacga accaaactag
      361 gatgcgtggc gcatgaaagc atatttaaag aagttttatt ttctttattt tgaaaaaatc
      421 ttaaaggcaa gtcttcaaag tcaatattta aaacataatc aggtattatg ccttctt
//
LOCUS       DARAII010000350          473 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.437, whole genome shotgun sequence.
ACCESSION   DARAII010000350 DARAII010000000
VERSION     DARAII010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.437"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>473
                     /locus_tag="SB143_002287"
     CDS             <1..>473
                     /locus_tag="SB143_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750760.1"
                     /translation="DSAYPILAKHGIKPDYVLSLERISLTSEFFNNDFGEFDQDVLFV
                     CISWVYPQTIKYLQKNNRAFILTSRPSSFIENINLCPYGYVGYGPSVAHMAYEFATHL
                     SHKNIIFIGQDLAYAKDGFSHTKDYSNLDKHEGHFQRDKGKFQCLAYGGNGKVESS"
BASE COUNT          156 a           65 c           85 g          167 t
ORIGIN      
        1 gatagtgctt atcctatttt ggctaaacat ggtataaagc ctgattatgt gctttctttg
       61 gaaaggattt ctttaacttc tgaatttttt aacaatgatt ttggggaatt tgatcaagat
      121 gttttgtttg tttgtataag ttgggtttat ccacaaacca taaaatatct tcaaaaaaat
      181 aatagagctt ttatacttac ttcaaggcca tctagtttta ttgaaaatat caatctttgc
      241 ccatatggct atgtaggtta tggaccaagt gttgcacata tggcttatga atttgcaact
      301 catctaagtc ataaaaacat catttttata ggacaggatt tagcttatgc aaaagatgga
      361 ttttctcata ccaaagatta tagcaatctt gataaacatg aaggacattt tcaaagagat
      421 aagggaaaat ttcaatgtct agcctatgga ggcaacggaa aggttgaaag ttc
//
LOCUS       DARAII010000351          472 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.438, whole genome shotgun sequence.
ACCESSION   DARAII010000351 DARAII010000000
VERSION     DARAII010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 472)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.438"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>472
                     /locus_tag="SB143_002288"
     CDS             <1..>472
                     /locus_tag="SB143_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2172 domain-containing protein"
                     /protein_id="HEF9750761.1"
                     /translation="VPDEWNAKEAYIITPEGEKICDFKKHNLHLLNYSEAIDQEIELE
                     ELQDHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKYKVYIDAKHDENGVL
                     DYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVAIFLAKWLLSLKKRRY"
BASE COUNT          176 a           81 c           82 g          133 t
ORIGIN      
        1 tagtccctga tgaatggaac gccaaagaag cctatattat cactccagaa ggagaaaaaa
       61 tttgtgattt taaaaagcat aacttacacc ttctaaatta tagcgaagct atcgatcaag
      121 aaatcgaact agaagaactt caagatcatc tttactccat agaagaaatg cccgatgcta
      181 ttccttatgt aacgagttat tacaaaaggc gttggggatt ttgtctcacg cataatgaaa
      241 gaaaaaaact caaaaaaggc aaatacaaag tctatatcga tgcaaaacat gatgaaaatg
      301 gggttttgga ttatgctgat tttatcctac ctagtacgca aaactcaaaa gatgaaattt
      361 taatttcaac ctatctttgc cacccttcca tggcaaataa tgagcttagt ggtcctgtgg
      421 tggctatttt cctagcaaaa tggcttttaa gtttaaaaaa aagaaggtat aa
//
LOCUS       DARAII010000352          469 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.439, whole genome shotgun sequence.
ACCESSION   DARAII010000352 DARAII010000000
VERSION     DARAII010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 469)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 469)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..469
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.439"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>469)
                     /locus_tag="SB143_002289"
     CDS             complement(<1..>469)
                     /locus_tag="SB143_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEF9750762.1"
                     /translation="NNLAGRKITNDTYQIDYRLNPDSNLLDLKFLFAYNDGKQKYNQD
                     KTWGYHDMSGVKTKNRAVTFDLSNTMNKEFSQDSNLYFTYGVNILNNHYSNDFPQDRV
                     LLPYILTSFYPKGKQDIKTLYLDTSFTKGIFTLNSNINWTNAQLSGYKGICSMA"
BASE COUNT          163 a           75 c           60 g          171 t
ORIGIN      
        1 tagccatgct acaaattcct ttatatccac ttaattgcgc attagtccaa ttgatattag
       61 aatttaaggt gaaaattcct tttgtaaaac tcgtatccaa ataaagggtt ttgatatctt
      121 gttttccttt aggataaaaa ctggttaaaa tataaggcaa aagcactcta tcttgtggaa
      181 aatcattact ataatgattg tttaaaatat taaccccata agtaaaatac aaatttgaat
      241 cttgtgaaaa ttctttattc atggtattac taagatcaaa agttaccgct cgatttttag
      301 tcttaactcc actcatatcg tgataacccc aagtcttgtc ttgattatac ttttgctttc
      361 catcattgta agcaaataaa aattttaaat ccaaaagatt agaatcagga tttaaacgat
      421 aatcaatttg ataggtatca tttgtaatct ttctacccgc aagattgtt
//
LOCUS       DARAII010000353          466 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.441, whole genome shotgun sequence.
ACCESSION   DARAII010000353 DARAII010000000
VERSION     DARAII010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 466)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.441"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(19..>466)
                     /gene="ptmA"
                     /locus_tag="SB143_002290"
     CDS             complement(19..>466)
                     /gene="ptmA"
                     /locus_tag="SB143_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HEF9750763.1"
                     /translation="QICENLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAP
                     KFENYEGTSMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFL
                     KAYRKCCASKGMLDADDVCGTLVFLLSDESKFITGQTLVVDDGWGL"
BASE COUNT          143 a           96 c           74 g          153 t
ORIGIN      
        1 gagtaggggt gaaggtcatc ataagcccca tccatcatct actactaagg tttgccctgt
       61 gataaattta ctctcatcgc taagtaaaaa caccaaagtt ccgcacacat catcagcatc
      121 taacataccc ttgcttgcac aacattttct ataagctttt aaaaaaagtt cattttgatt
      181 gtctaaaatt cccccgcttg ctagagtatt aacgcgtatg ttttgattaa aaagctcttt
      241 agctagccaa gagctcatgt gattaatccc tgcttttatc acgctgtatt ctaaagagct
      301 ttgcatggaa gtgccttcat agttttcaaa ttttggcgca taaactccca tgatggagct
      361 aagattgatg atattaccat agccttgttg tttaaaaaat ttcacaaatt cttgagcggc
      421 tagcataaag cctgctaaat gtaaatttaa attttcacaa atttgt
//
LOCUS       DARAII010000354          461 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.444, whole genome shotgun sequence.
ACCESSION   DARAII010000354 DARAII010000000
VERSION     DARAII010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 461)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.444"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>461
                     /locus_tag="SB143_002291"
     CDS             <1..>461
                     /locus_tag="SB143_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="back-translocating Elongation Factor EF4; binds to
                     the ribosome on the universally-conserved alpha-sarcin
                     loop; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEF9750764.1"
                     /translation="VINKIDLPNADVEKVKHEIEHIIGIDCKDAICVSAKTGVGIKEL
                     IETIIAKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSIAKNDEVLVMSTEK
                     KHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTITLVKNKA"
BASE COUNT          163 a           61 c           97 g          140 t
ORIGIN      
        1 gtgattaata aaatcgattt acctaatgct gatgttgaga aagtaaagca tgaaatcgag
       61 catattatag gtatagattg caaagatgca atttgcgtga gtgcaaaaac aggagtgggt
      121 ataaaagagc ttatagaaac aattattgct aaaatccctg caccaaaaac agatgatgaa
      181 gctcctacta aggctttaat ttatgattct tggtttgata attatttggg tgctttggct
      241 ttggttagga tttatgaagg aagtattgct aaaaatgatg aagttttggt aatgagtaca
      301 gaaaaaaaac atatagttca agatcttttt tatccccacc ctttaagtcc aattaaaact
      361 caatctttac aatcaggcga agtaggtgtg gtggttttag ggcttaaaac cgtaggtgat
      421 gtacaagtgg gcgatactat caccttagta aaaaacaaag c
//
LOCUS       DARAII010000355          456 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.446, whole genome shotgun sequence.
ACCESSION   DARAII010000355 DARAII010000000
VERSION     DARAII010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.446"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
BASE COUNT          211 a           40 c           69 g          136 t
ORIGIN      
        1 aaaagtaata ttactttaaa tcaataaaat aatactttta ttaatgttaa ttcttctttc
       61 gattgcttac ccaaactatc aaaagaaatg caagaaaagt gcatttcttt aatggaaaaa
      121 caaacagatc atattataaa tattgaaagg aaattaattg aagatgatat ttacccaagt
      181 gattttgaag aatttagcgt ggaagatgta gtatgatttt atgaagcact aagcgaaaaa
      241 gagcaaaatg agtttttata ccgaattaaa aaaagtaaaa gcacagaccc tgaagagaaa
      301 ataagagaat tatttgatga attaaataat gatgaaacgg taatgctttt aaaagaatta
      361 aatgaaaaat ttaaaagttt tgaagaatgg caagaaattg ttaaaagtat taataacata
      421 gaagcttaaa aagagttata tttcaaacaa gaataa
//
LOCUS       DARAII010000356          455 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.447, whole genome shotgun sequence.
ACCESSION   DARAII010000356 DARAII010000000
VERSION     DARAII010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.447"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>455)
                     /locus_tag="SB143_002292"
     CDS             complement(<1..>455)
                     /locus_tag="SB143_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit alpha"
                     /protein_id="HEF9750765.1"
                     /translation="IVYKGMLLSTQLSDFYLDFKDVNMKSAIALVHSRFSTNTFPSWE
                     RAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEYFENLDEIFPIIAKPSSDSAMFDN
                     TLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKRAFYEYHSLLMEPWDG"
BASE COUNT          151 a           93 c           66 g          145 t
ORIGIN      
        1 ccatcccaag gctccatcaa taaagaatga tattcataaa aagcacgctt tttgctttcc
       61 atattttcat ttttatgcca aggttctggc accatcatca taaaagcttc ttctaaagta
      121 cgaccattta gagctaaaaa ttctaaagta ttatcaaaca ttgcagaatc actgctaggc
      181 ttagctatga taggaaaaat ttcatctaaa ttttcaaaat actcactttg catcaagcct
      241 tctctagctc ttatgctatc aacatttccg cgtatggtat taatctctcc attatgcacc
      301 atataacggt ttggatgggc tctttcccaa cttgggaagg tattagtcga aaagcgagaa
      361 tgcaccaaag cgatggctga tttcatattg acatctttaa aatcaagata aaaatcactc
      421 aattgagttg aaagaagcat tcctttataa actat
//
LOCUS       DARAII010000357          453 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.448, whole genome shotgun sequence.
ACCESSION   DARAII010000357 DARAII010000000
VERSION     DARAII010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.448"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>453
                     /locus_tag="SB143_002293"
     CDS             <1..>453
                     /locus_tag="SB143_002293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="topoisomerase DNA-binding C4 zinc finger
                     domain-containing protein"
                     /protein_id="HEF9750766.1"
                     /translation="EPPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVKIDKK
                     QLIPSDVAFNVTEVLEKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMR
                     KIEEGKTKIASQKTVTKLGESCPDCGGELAIRKGRFGEFVACLNFPKCK"
BASE COUNT          171 a           72 c           87 g          123 t
ORIGIN      
        1 gaaccacctt caaggtattc agaagcagga cttgtaaaaa aacttgaaag tttaggcata
       61 ggtcgccctt ctacctatgc gccaaccatt tctatactta caagccgtga ttatgtaaaa
      121 atagataaaa aacaactcat tcctagcgat gttgctttta atgtaaccga agtgcttgaa
      181 aaaaatttta gcgatatagt agatagtaaa tttacttcaa accttgaaaa taccttagat
      241 gaaatcgcag aagataaggc agattggcaa gaaactttaa aagaatttta ctatcctttt
      301 atgagaaaaa tcgaagaagg aaaaacaaaa atagctagtc aaaaaactgt cacaaagcta
      361 ggcgaaagtt gtcctgattg tggcggggag cttgctatta gaaaagggcg ttttggagaa
      421 tttgtagcgt gtttaaattt cccaaaatgc aaa
//
LOCUS       DARAII010000358          452 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.450, whole genome shotgun sequence.
ACCESSION   DARAII010000358 DARAII010000000
VERSION     DARAII010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.450"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..183
                     /locus_tag="SB143_002294"
     CDS             <1..183
                     /locus_tag="SB143_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEF9750767.1"
                     /translation="NLEFEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTK
                     LKDGDKIALLPPVCGG"
     gene            184..>452
                     /locus_tag="SB143_002295"
     CDS             184..>452
                     /locus_tag="SB143_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEF9750768.1"
                     /translation="MEHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESS"
BASE COUNT          152 a           50 c           99 g          151 t
ORIGIN      
        1 aatttagagt ttgaggtaaa aaatttaaaa gaattaaaag aaattttgca aaaagatgag
       61 agtttaaaag aatggctaga actttgtgct gtatctttaa acgatgaaat catttttgat
      121 gaaaacacta agttaaaaga tggtgataaa atagcacttt taccgccagt ttgtgggggt
      181 taaatggaac attttacact ttatcaaggt tctttagata ttcctaaaat ttatagccaa
      241 tggtatgaat ttgccaagga taaaaactgc ggtgctttgc tgactttttg tggtattgtg
      301 cgtgaagaag gaggcattga ggcacttagt tttgatattt atgaaccgct tttaaaaaaa
      361 tggtttgatg agtggcaaaa aagagtagat tttgatggta ttagcttgct ttttgctcac
      421 tctataggcg atgtggcgat acatgaaagc tc
//
LOCUS       DARAII010000359          452 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.451, whole genome shotgun sequence.
ACCESSION   DARAII010000359 DARAII010000000
VERSION     DARAII010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.451"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..423)
                     /locus_tag="SB143_002296"
     CDS             complement(<1..423)
                     /locus_tag="SB143_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEF9750769.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEV"
BASE COUNT          132 a           98 c           68 g          154 t
ORIGIN      
        1 cacttccaaa ctttcttcat cttttggatc aatttgccca aaaacagtat gaactccatc
       61 taaatgagct tgagggctgt gacaaataaa aaattgagag ccacccgtat cgcgtcctgc
      121 gtgtgccata gataaggttc cacgctcatg tttatgttct tgatcatcac attcgcaaat
      181 gatttcatat ccaggcccac ctacaccatt gccgtgtgga caacctcctt gtatgacaaa
      241 atttgggatc acacgatgaa aatttaaatc tttataaaat ccctcattgg ccaaagtagc
      301 aaaattacaa accgtttgcg gagcctcatc gccaaaaagt tttaatttca ttgtgccttt
      361 ttcagtttct ataagagcaa atttatattc atttactttg cttgtgtcga ttgtttttat
      421 cattatttct ccttaatcta tatttgtata aa
//
LOCUS       DARAII010000360          442 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.459, whole genome shotgun sequence.
ACCESSION   DARAII010000360 DARAII010000000
VERSION     DARAII010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 442)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.459"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>442
                     /locus_tag="SB143_002297"
     CDS             <1..>442
                     /locus_tag="SB143_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002818608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750770.1"
                     /translation="AKNTATTEISNKKEEHKQELETKKNEYINKIVAKANEYDIANIN
                     AQVKAKVTKTGDETIAGIKTFSVPPVSATNPTASNQVANKAYVDSVVNAKANANAVVT
                     LTGNQTVAGVKTFSSPVVVPNATANTHAVNLAQLNTKANQATTYT"
BASE COUNT          185 a           79 c           72 g          106 t
ORIGIN      
        1 aagctaaaaa tacagctaca actgaaatat caaataaaaa ggaagagcat aaacaagagt
       61 tagaaactaa gaagaatgaa tatattaata aaattgttgc aaaagctaat gagtatgata
      121 ttgccaatat taatgcgcaa gttaaagcta aggtaacaaa aaccggagat gaaactatag
      181 caggcattaa gacattctca gtaccacctg tatcagcaac taatcctact gctagcaatc
      241 aagtagctaa taaagcttat gttgatagcg tagtaaatgc taaagcaaac gctaatgccg
      301 tagtaacctt aactggtaac caaacagttg ctggtgttaa gacattttct agtcctgtag
      361 tagtacctaa tgctacagca aatactcacg cagtaaatct agctcaacta aataccaaag
      421 ctaatcaagc aacaacatat ac
//
LOCUS       DARAII010000361          439 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.460, whole genome shotgun sequence.
ACCESSION   DARAII010000361 DARAII010000000
VERSION     DARAII010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.460"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(106..390)
                     /locus_tag="SB143_002298"
     CDS             complement(106..390)
                     /locus_tag="SB143_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002793349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750771.1"
                     /translation="MKKNFFLLALLLGFFITSAFAGNTDSIGAKGLWDIVSGWLNDTY
                     VSRIIALLLFCVGVWRAFAGSILQFFLMLGFAVLVTQGSTIIETINSATF"
BASE COUNT          170 a           85 c           54 g          130 t
ORIGIN      
        1 ataaccattt tcagtttttg ccaaaattaa ctcctttttt atatttattg aaatttcatt
       61 aaaaaatctc aagaaaaata aaaaagggtt tttacaccct ttttattaaa atgtagcaga
      121 attgatagtt tcaatgatcg tacttccctg agtaacaagt actgcaaaac ctagcattaa
      181 gaaaaattgc aaaattgaac ctgcaaaagc tctccaaacg ccaacacaaa aaagtagcaa
      241 ggctataatt cttgaaacat aagtatcatt taaccaacca cttacaatat cccaaagccc
      301 ttttgcacca atactatcag tatttcctgc aaaagcactt gtaatgaaaa accctagaag
      361 taaagctagg agaaaaaaat tctttttcat aaaaacctca caatttggac ttgtgtagct
      421 cttagcccag attggagct
//
LOCUS       DARAII010000362          439 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.461, whole genome shotgun sequence.
ACCESSION   DARAII010000362 DARAII010000000
VERSION     DARAII010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 439)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.461"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>439
                     /locus_tag="SB143_002299"
     CDS             <1..>439
                     /locus_tag="SB143_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEF9750772.1"
                     /translation="LSGEKNLNSGVQSKKFSNSLNLSYELDIYGRIRDSSSASDFSAK
                     ASAYDLENLKISMINTALNGIFELAYFNDVDNLLKEYLANLEQMRELYAYKFELGKIE
                     ELDLLNIEQNLLKARQDLLRNEQNRNLLIKNLQDLIGKQEGFAY"
BASE COUNT          163 a           44 c           89 g          143 t
ORIGIN      
        1 cttagtggag aaaagaattt aaattctgga gtccaaagta agaaatttag caatagtctt
       61 aatttaagct atgagcttga catttatgga aggataaggg atagctcaag tgcgagtgat
      121 tttagtgcaa aggctagtgc ttatgatctt gaaaatttga aaatcagtat gattaatacg
      181 gctttaaatg gtatttttga acttgcttat tttaatgatg tggataattt acttaaagag
      241 tatctagcta atttagaaca aatgagagag ctttatgctt ataaatttga gcttggaaaa
      301 atcgaagaac ttgatttgct taatatagag caaaatttat taaaggcaag gcaagattta
      361 ttacgcaatg agcaaaatcg caatttactt ataaaaaatt tacaagattt gataggaaag
      421 caagagggct ttgcgtata
//
LOCUS       DARAII010000363          434 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.463, whole genome shotgun sequence.
ACCESSION   DARAII010000363 DARAII010000000
VERSION     DARAII010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 434)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.463"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>434
                     /locus_tag="SB143_002300"
     CDS             <1..>434
                     /locus_tag="SB143_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEF9750773.1"
                     /translation="LPYLNSSLFEKQSIENTLEISNLNNDLKLNYYKNTVLKDDKCKA
                     KKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQKELISSSVLGNVFEKLNGYKEGSFYT
                     PSFITSYMCKESITKVVLDKFNAQFDLDAKNISELRKSLRKE"
BASE COUNT          171 a           59 c           76 g          128 t
ORIGIN      
        1 ctgccttatt taaattcttc tttgtttgaa aaacaaagca tagaaaacac acttgaaatt
       61 tcgaatttaa acaatgattt aaaacttaac tactacaaaa acacggtgct aaaagatgat
      121 aaatgcaagg ctaaaaaagg acaagtgggg cttttagaat acttgtttga atttttggat
      181 agctttgatt ttggtagtga tgatgagcaa agcgaaattt taagccaaaa agaactcata
      241 agctcaagcg ttttaggaaa tgtatttgaa aaactcaatg gctacaaaga agggagcttt
      301 tacacgccaa gctttatcac ttcttatatg tgtaaagaaa gcatcacaaa agttgtgctt
      361 gataaattca atgctcaatt tgatcttgat gctaaaaata taagcgaact aagaaagtct
      421 ttaagaaaag aaga
//
LOCUS       DARAII010000364          433 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.464, whole genome shotgun sequence.
ACCESSION   DARAII010000364 DARAII010000000
VERSION     DARAII010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 433)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 433)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..433
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.464"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>433
                     /locus_tag="SB143_002301"
     CDS             <1..>433
                     /locus_tag="SB143_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEF9750774.1"
                     /translation="INIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGE
                     PYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYI
                     NYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNLLFEAL"
BASE COUNT          146 a           51 c           91 g          145 t
ORIGIN      
        1 gtatcaatat ttggggagca gatcatcatg gttatatccc tagaatgaaa gctgcgatgg
       61 aatttttggg atttgactct aataatcttg agattatttt agcacaaatg gtttccctac
      121 ttaaagatgg agaaccttat aaaatgagta aaagagcagg aaattttatc ttgatgagcg
      181 atgtggttga tgagatagga agtgatgctt tgcgttatat ctttttgagc aaaaaatgcg
      241 atactcattt ggaatttgat attagtgatt tgcaaaaaga agatagttct aatcctgtgt
      301 attatatcaa ctatgcacac gctagaattc atcaagtgtt tgctaaagct ggtaaaaaaa
      361 tcgatgatgt aatgaaagct gatttacaaa gtttaaatca agatggcgta aatttgcttt
      421 ttgaagcttt gaa
//
LOCUS       DARAII010000365          426 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.466, whole genome shotgun sequence.
ACCESSION   DARAII010000365 DARAII010000000
VERSION     DARAII010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.466"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
BASE COUNT          160 a           44 c           49 g          173 t
ORIGIN      
        1 agctaaaaaa tccccagcaa aagcagaact agtcagtaaa gaagttaaag ctaataaagc
       61 aaaaatcttt ttcattgaaa atcctttcat aaattctttt tgtaagttct ttaaaactac
      121 tatcgactta ttctagcaaa agtttaatct tgctttgaaa gttaagtgaa ttttctttaa
      181 atacttaaaa ttttattctc ggtttgtttg cttttgtaat aaattttcat ttttatctta
      241 aattatatta agcaagtaaa aatatttaaa gattttaaaa tactttattt agaataataa
      301 acttttcaat atcaaggatt aaattttaaa attaacttga gctgattatt taaaatgtaa
      361 ggattgacaa tgaaaaaaat tttcttagca tttatggttt tagttaattg tgtttttgct
      421 agtgat
//
LOCUS       DARAII010000366          426 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.467, whole genome shotgun sequence.
ACCESSION   DARAII010000366 DARAII010000000
VERSION     DARAII010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.467"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            111..>426
                     /locus_tag="SB143_002302"
     CDS             111..>426
                     /locus_tag="SB143_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEF9750775.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALADEVLCEENESWQNSNNHIAFSKDADLVLFAPASVNSINKLAFGIADNLFI
                     QTL"
BASE COUNT          148 a           54 c           79 g          145 t
ORIGIN      
        1 atcatagcag caggaagcac agtaagtgtc aatgtagaaa aaggtgcttt gtttatcaat
       61 agagcagagc ataaaatgat aaaagattat tattataaga aatttcaaaa atgaaaacca
      121 tacttttagc cattagtggc agtatagctt tttataaatc ttatgagctt atttctttgt
      181 ttaaaaaaga aggttttagg gtaaaagttt tgctttctaa tggtttgtta aaatttgcta
      241 gcaaaatgag ctttgaagcc ttggctgatg aagtgttatg cgaggaaaat gaaagttggc
      301 aaaactcaaa caatcacata gcttttagta aggatgcaga tcttgttttg tttgcccctg
      361 caagtgttaa ttctatcaat aaacttgctt ttggtatagc agataatctt tttatccaaa
      421 ccttaa
//
LOCUS       DARAII010000367          423 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.469, whole genome shotgun sequence.
ACCESSION   DARAII010000367 DARAII010000000
VERSION     DARAII010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.469"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..175
                     /locus_tag="SB143_002303"
     CDS             <1..175
                     /locus_tag="SB143_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEF9750776.1"
                     /translation="LDDYTLYSGEEYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAV
                     KGKYEFRGREHHF"
     gene            144..>423
                     /gene="truD"
                     /locus_tag="SB143_002304"
     CDS             144..>423
                     /gene="truD"
                     /locus_tag="SB143_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEF9750777.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYELSG
                     KGEHLILHINKKDLSTNEALRILSELSGVKMRDFGYAGLKDKQGSTFQY"
BASE COUNT          158 a           51 c           86 g          128 t
ORIGIN      
        1 acttgatgat tatacgcttt atagtggaga agaatatgaa attttgtttg cttttgatga
       61 aaaagagcgt caaaatataa aaacaatagc caaaaaacac ggcgtgaaat taaatatctt
      121 tggaaaagca gtgaaaggaa aatatgaatt tagaggaaga gaacaccatt tttaagcctt
      181 tatatagttt aaaacacagt cctattaatg cgtattttag taaaaatagc gatgattttg
      241 tagtgcgtga aaggcctttg tatgaattga gtggcaaggg cgaacatctt atcttgcata
      301 tcaataaaaa agatttaagc actaatgaag ctttaagaat tttaagcgaa ttaagcgggg
      361 ttaagatgcg tgattttggc tatgctggac ttaaagacaa gcaaggctct acttttcaat
      421 atc
//
LOCUS       DARAII010000368          419 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.471, whole genome shotgun sequence.
ACCESSION   DARAII010000368 DARAII010000000
VERSION     DARAII010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.471"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>419
                     /locus_tag="SB143_002305"
     CDS             <1..>419
                     /locus_tag="SB143_002305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEF9750778.1"
                     /translation="INYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQEGVM
                     PQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFAIVY
                     AAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTN"
BASE COUNT          145 a           71 c           82 g          121 t
ORIGIN      
        1 atcaattaca aaggtacaaa aatcaacatc atagatactc cagggcatgc tgattttggc
       61 ggagaagtag aacgtgtttt aaaaatgatt gatggggttt tgcttttagt agatgctcaa
      121 gaaggcgtta tgccacaaac taaattcgtg gttaaaaaag ctttatcttt agggcttaaa
      181 cctatagttg taatcaacaa aatcgacaaa ccagctgctg atcctgaaag agtaatcaat
      241 gaaatttttg atctttttgt agccctagat gcaaacgatg agcaacttga ctttgccata
      301 gtttatgctg cagcaaaaaa tggttatgct aagcttgatc taaacgatga aagtgataat
      361 atggaaccac tttttaaaac catacttgaa cgcgttccag ctccaagtgg cacaaatga
//
LOCUS       DARAII010000369          417 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.472, whole genome shotgun sequence.
ACCESSION   DARAII010000369 DARAII010000000
VERSION     DARAII010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.472"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(137..>417)
                     /locus_tag="SB143_002306"
     CDS             complement(137..>417)
                     /locus_tag="SB143_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HEF9750779.1"
                     /translation="DLPFAMGRFCSTEGIENLSVASDFVAKEFGEKYGVLIGEGPLEG
                     LLARAVFVIKDGKIAYKELVSEVTEMPDIAKLDAFFGGSSCCGGCGCH"
BASE COUNT          157 a           82 c           55 g          123 t
ORIGIN      
        1 ttgaaataat aagattataa aaaataaaac aggctagaaa actctaatct aataaaaata
       61 taaaataatg tttgataaat gattttgttt gaaaagctaa gaaagtagcc ccattggggg
      121 ctttatatgt agaaaattaa tgacaaccgc atccgccgca gcagctagag ccaccaaaaa
      181 atgcatcaag ttttgcaata tctggcattt ctgtcacttc acttactaat tctttataag
      241 cgattttacc atctttgatt acaaatacag cacgagctaa aagaccttct agtggacctt
      301 caccaattaa aacgccatat ttttctccaa attcttttgc tacaaaatcg ctagcaacac
      361 ttagattttc tataccttca gtactgcaaa atctacccat agcaaaaggt aaatcca
//
LOCUS       DARAII010000370          416 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.473, whole genome shotgun sequence.
ACCESSION   DARAII010000370 DARAII010000000
VERSION     DARAII010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.473"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>416)
                     /locus_tag="SB143_002307"
     CDS             complement(<1..>416)
                     /locus_tag="SB143_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEF9750780.1"
                     /translation="NSVLGDEKILVVGGGNSAAEYAVDLASSNKVSLCYRKKEFTRLN
                     DINLKDIHEAGNSGKVELKLGIDIEELEDDNGKAKVKFNDGSSETYDRIIYAIGGSTP
                     LDFLQKCGINVDDKGVPLMDENKQSNVKGIFVAGDIA"
BASE COUNT          120 a           93 c           52 g          151 t
ORIGIN      
        1 gcaatatctc ctgctacgaa aatacctttt acattgcttt gtttattttc atccattaaa
       61 ggaactcctt tatcatcaac attgattccg catttttgta aaaaatcaag aggagtagaa
      121 ccaccgatag cataaatgat tctatcataa gtctcactgc taccatcgtt aaatttcact
      181 ttagctttgc cattatcatc ctcaagctct tctatatcta taccgagttt taattctact
      241 ttgcctgaat ttccagcttc gtggatatct ttaagattaa tatcatttag tcttgtaaat
      301 tctttcttgc gataacaaag gcttacttta tttgaactag ccaaatccac tgcgtactct
      361 gcagctgaat ttccgcctcc tacaacgagg attttttcat cacctaaaac agagtt
//
LOCUS       DARAII010000371          411 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.476, whole genome shotgun sequence.
ACCESSION   DARAII010000371 DARAII010000000
VERSION     DARAII010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.476"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            98..319
                     /locus_tag="SB143_002308"
     CDS             98..319
                     /locus_tag="SB143_002308"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750781.1"
                     /translation="MNQEIKNVEVPMNENTYKKWQRVPKDMQEKAIEAALTMLWRDEV
                     FFYTFFNGHIEEGEIRIEAKREEKVEFPY"
BASE COUNT          179 a           41 c           76 g          115 t
ORIGIN      
        1 aagatcaaag atgaagttaa aaaagctagg gaagagtttt ttaaagctag agatattaac
       61 aataatatca atgataattt taacaaagga gaaaaaaatg aatcaagaaa ttaaaaatgt
      121 agaagttcca atgaatgaga atacttacaa gaaatggcaa agagttccaa aagacatgca
      181 agaaaaagct attgaagctg ctcttacaat gttatggaga gatgaagtat ttttctatac
      241 tttttttaat ggacacattg aagaaggcga gattagaata gaagcaaagc gtgaagaaaa
      301 agttgaattt ccttattagg atattcaacg catgaatcac tttaggcaca tattataata
      361 cagaagagaa tatatgaaaa cttttaatac tgatgattat attgcgattg t
//
LOCUS       DARAII010000372          406 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.479, whole genome shotgun sequence.
ACCESSION   DARAII010000372 DARAII010000000
VERSION     DARAII010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.479"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>406
                     /locus_tag="SB143_002309"
     CDS             <1..>406
                     /locus_tag="SB143_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEF9750782.1"
                     /translation="QHGVIKDDLSRWLNQRKIDTFITSTKAEYESIAGDFNHYKFSTK
                     EVVLTGLARWDALIKNNVLNTKQIVIMPTWREYLSGKVQKYGVRGRNPEFVKSLYFQK
                     WQEFLCSKELEKLAVRYGYNIIFTPHPQVRIYL"
BASE COUNT          161 a           54 c           79 g          112 t
ORIGIN      
        1 caacatggag taataaagga tgatttatcc agatggctta atcaaagaaa aatagataca
       61 tttatcacaa gcacgaaggc agaatatgaa tctatagcag gtgattttaa tcattacaaa
      121 tttagcacca aagaagtagt tttaacaggg ttggcaagat gggatgcctt gattaaaaac
      181 aatgttttaa ataccaaaca aattgtcatt atgccaacat ggcgagagta tttaagtggg
      241 aaagtgcaaa aatacggggt tagaggtaga aatcccgaat ttgtaaaatc actttatttt
      301 caaaaatggc aagaattttt atgcagcaaa gaactggaaa aattagcagt gcgatatgga
      361 tataacatta tttttacacc gcatccgcaa gtaagaatat atttag
//
LOCUS       DARAII010000373          398 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.484, whole genome shotgun sequence.
ACCESSION   DARAII010000373 DARAII010000000
VERSION     DARAII010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 398)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.484"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..119)
                     /locus_tag="SB143_002310"
     CDS             complement(<1..119)
                     /locus_tag="SB143_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEF9750783.1"
                     /translation="MLTYSHQNIDQSDIDTLTEALKDEILTGGKKVDEFEEAL"
     gene            complement(121..>398)
                     /locus_tag="SB143_002311"
     CDS             complement(121..>398)
                     /locus_tag="SB143_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEF9750784.1"
                     /translation="LSHKIIGIRAGEKLHEIMISSDDSHLTYEFENYYAISPSIKFVD
                     KDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF"
BASE COUNT          109 a           73 c           58 g          158 t
ORIGIN      
        1 caaagggctt cttcaaattc atctaccttt ttacctcccg ttaaaatttc atcttttaaa
       61 gcttctgtaa gcgtatctat atcgctttga tcgatgtttt gatgagaata agtaagcatt
      121 ttaaaaacct tcggtgtgat tgatgatttc taaaagttct ttttcgcttg cccataaagg
      181 attattatcc gagctataag aaaaaccatc ttttaccttt tgcccttttt cgcctagggc
      241 attgatacta aagtcattat ctttatctac aaatttaata ctcgggctta tagcatagta
      301 gttttcaaat tcataggtta aatggctatc atcgcttgaa atcatgattt catgtagttt
      361 ttctcctgct cttatgccta tgattttatg gcttaaat
//
LOCUS       DARAII010000374          394 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.485, whole genome shotgun sequence.
ACCESSION   DARAII010000374 DARAII010000000
VERSION     DARAII010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.485"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>394
                     /locus_tag="SB143_002312"
     CDS             <1..>394
                     /locus_tag="SB143_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEF9750785.1"
                     /translation="LGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLY
                     VLVGVVLWIAMLKSGVHATLAGVIIALFIPLDTKNKKPYLHEVHKDLNPWVVYFILPL
                     FAFANAGIDLRDMHLGSVFSPVSLGIILG"
BASE COUNT           91 a           55 c           76 g          172 t
ORIGIN      
        1 ttgggtgcta ttgttattat tgctttgttt tatacagatc agctttcagc tttagcaatt
       61 attatttgtt tgttttgtat atttgctctg cttttgttaa attattatca catcacccat
      121 ctttctttgt acgtgttggt aggtgttgtg ttgtggatag ctatgcttaa aagtggagtg
      181 catgcaactt tagcgggtgt aatcatagct ttatttatcc ctcttgatac taaaaataaa
      241 aaaccctatc ttcatgaagt gcataaggat ttaaaccctt gggtggttta ttttattttg
      301 cctttatttg cttttgcaaa tgcgggtatt gatttaagag atatgcatct tggttcagta
      361 ttttctcctg taagtcttgg gattatttta ggac
//
LOCUS       DARAII010000375          392 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.486, whole genome shotgun sequence.
ACCESSION   DARAII010000375 DARAII010000000
VERSION     DARAII010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 392)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.486"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>392
                     /locus_tag="SB143_002313"
     CDS             <1..>392
                     /locus_tag="SB143_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEF9750786.1"
                     /translation="DDLVTELKREFPHLLFSPYISTQVVAKADNRFEGGVLFGVNFND
                     EVKINEVVAKALKDENLSGFDILVGSVLADELNLHKNDKLSLIFSNLSPSGFSLVPQA
                     KRFDVKARFTSGLIFYDKAYMYTDVNAL"
BASE COUNT          118 a           61 c           80 g          133 t
ORIGIN      
        1 atgatgattt ggtaacagag cttaaaagag aatttcctca tttgcttttt agtccgtata
       61 ttagcactca agttgtagca aaagcagaca atcgctttga aggaggtgtc ctttttggcg
      121 tgaatttcaa cgatgaagtt aagatcaatg aagtggtagc taaagcttta aaagatgaga
      181 atttaagcgg ctttgatata cttgtgggtt cggtgcttgc agatgaactt aatttacata
      241 aaaacgacaa actttcactt atcttttcaa atcttagccc cagtggattt tctttggttc
      301 cacaagctaa acgctttgat gtgaaagcgc gttttacttc agggcttata ttttatgata
      361 aagcttatat gtatacggat gtaaacgcac tt
//
LOCUS       DARAII010000376          391 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.488, whole genome shotgun sequence.
ACCESSION   DARAII010000376 DARAII010000000
VERSION     DARAII010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.488"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(17..>391)
                     /locus_tag="SB143_002314"
     CDS             complement(17..>391)
                     /locus_tag="SB143_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002786814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine synthase"
                     /protein_id="HEF9750787.1"
                     /translation="SNGCKYYRNDYNYKIGESNFNFKDKPEFAYYEDQFKAYMGEENY
                     KKLRPYLGMTTYYVCEGKKYPVVFSTMIDYKVKNYGLFGDEGRGFSFSSISRKSAGGG
                     SFHYFTNGKFIKSDEKYTGQSY"
BASE COUNT          125 a           69 c           41 g          156 t
ORIGIN      
        1 agttctttag gattcatcag taactttgtc ctgtatattt ttcatcactt tttataaatt
       61 taccattggt aaaataatga aaagatcctc cgcctgcact tttacgactt atgcttgaaa
      121 agctaaatcc tcttccttca tctccaaata aaccatagtt ttttacttta taatctatca
      181 tggtagaaaa aacaacagga tattttttac cctcacacac ataataagtt gtcataccta
      241 aataaggtct taatttttta tagttttctt cacccatata tgctttaaat tgatcttcat
      301 agtatgcaaa ttcgggttta tctttgaagt tgaagtttga ttctcctatt ttataattat
      361 aatcattacg ataatattta caaccattag a
//
LOCUS       DARAII010000377          387 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.491, whole genome shotgun sequence.
ACCESSION   DARAII010000377 DARAII010000000
VERSION     DARAII010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.491"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>387)
                     /locus_tag="SB143_002315"
     CDS             complement(<1..>387)
                     /locus_tag="SB143_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthetase"
                     /protein_id="HEF9750788.1"
                     /translation="TLLKNSGLKVSILKADPYINVDPGTMSPFEHGEVFVTDDGAETD
                     LDLGHYERFLDESLSQDNNFTTGRVYQSVIEKERRGEYLGKTIQVIPHIVGEIKDRIK
                     KAGEGKDILIVEIGGTVGDIEGLPFLE"
BASE COUNT          108 a           92 c           55 g          132 t
ORIGIN      
        1 ttctaaaaac ggcaagccct cgatatcccc gacagttcca cctatctcta cgattaagat
       61 atccttgcct tctcctgctt ttttaatacg atctttaatc tctcctacga tatgtggaat
      121 aacttggatg gttttgccaa gatattctcc gcgtctttct ttttcaatca cgctttgata
      181 aacgcgtcct gtggtgaaat tgttatcttg cgataaactc tcatccaaaa aacgctcata
      241 atgccctaaa tcaagatcgg tttctgctcc atcatctgta acaaaaactt ctccatgctc
      301 aaatggactc atggtgccag gatcaacatt tatataagga tctgctttta aaatacttac
      361 tttaagtcct gaatttttca ataaagt
//
LOCUS       DARAII010000378          384 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.494, whole genome shotgun sequence.
ACCESSION   DARAII010000378 DARAII010000000
VERSION     DARAII010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.494"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>384
                     /locus_tag="SB143_002316"
     CDS             <1..>384
                     /locus_tag="SB143_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase"
                     /protein_id="HEF9750789.1"
                     /translation="EDMAIVGGAQDQYAATFGGFNFMEFYNQKRVIVNPLRIKNWIAS
                     ELEARVLLYFTNITREAKDIEEHKKGKLGDENSLNAMHAIKQDALDMKEALFRADFEK
                     IAQILGKSWQSKKIISEIVSNDELER"
BASE COUNT          147 a           45 c           84 g          108 t
ORIGIN      
        1 gaagatatgg ctatagtagg gggtgcacaa gatcaatacg ctgcgacttt tggtggattt
       61 aattttatgg aattttataa tcaaaaaaga gttatagtca atcctttacg cattaaaaac
      121 tggatagcaa gtgagcttga agctagggtt ttgctttatt ttacaaatat cactagagaa
      181 gcaaaggaca tagaagagca taaaaaggga aagttaggag atgaaaactc acttaatgct
      241 atgcatgcga taaaacaaga tgcgttagat atgaaagaag cgttatttag agctgatttt
      301 gaaaaaatag cacaaatttt aggtaaatct tggcaatcaa aaaagattat ttccgaaatc
      361 gttagcaatg atgagcttga aagg
//
LOCUS       DARAII010000379          383 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.495, whole genome shotgun sequence.
ACCESSION   DARAII010000379 DARAII010000000
VERSION     DARAII010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.495"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(123..>383)
                     /locus_tag="SB143_002317"
     CDS             complement(123..>383)
                     /locus_tag="SB143_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEF9750790.1"
                     /translation="ARREDIMMQFLIEAVMICSMGAILGVLLSVFVIFGFNTLSTDFP
                     MILNAYSVLLGLLSSVLIGVIFGFFPARNAANLNPISALSKE"
BASE COUNT          152 a           79 c           48 g          104 t
ORIGIN      
        1 cataagtgat atttaagtct ttaaagctct cttcgctcat tgtaggctct ttaggcaagc
       61 taagttttac accacaggcg cttaaaaaaa ataccagtaa aatactcaat aaatttttca
      121 ttttattcct ttgataaggc gctaatagga tttaaattgg ctgcatttct tgcagggaaa
      181 aatccaaaaa taaccccaat taaaacagaa cttaataaac ccaaaagcac agaatacgca
      241 tttaaaatca taggaaaatc agtgcttaga gtattaaaac caaaaatcac aaaaacagaa
      301 agcaaaactc ctaaaatcgc acccatagaa catatcatca ccgcttcgat taaaaactgc
      361 atcatgatat cctctcttct agc
//
LOCUS       DARAII010000380          383 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.496, whole genome shotgun sequence.
ACCESSION   DARAII010000380 DARAII010000000
VERSION     DARAII010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.496"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>383)
                     /locus_tag="SB143_002318"
     CDS             complement(<1..>383)
                     /locus_tag="SB143_002318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEF9750791.1"
                     /translation="FVGVGSVVNSACIVLDGSIEYEANKLYKDSKLNQIIRLLEFAST
                     KKARLESLVSQISAYFSRTILTLALLCFFFWLFYHQESVEISLVHAISVLIIACPCAL
                     ALATPVSNLIALGQALKRAILFKDS"
BASE COUNT          152 a           73 c           58 g          100 t
ORIGIN      
        1 cttgaatcct taaataaaat cgctcttttt aaagcctgac ccaaagcgat aagattgctt
       61 actggagtag ctaaagctag agcacaagga caagcaatga ttaaaacaga aatcgcatga
      121 acaagtgaaa tttcaacact ttcttgatga taaaacagcc aaaagaaaaa acaaagcaag
      181 gcaagagtta aaatggtacg agaaaaataa gcagaaattt gagaaaccaa gctttcaagt
      241 ctagcttttt tggtgctagc aaattccaaa agccttatga tttgatttaa tttagaatcc
      301 ttataaagct tatttgcttc atattctata cttccatcta gcacaataca agctgaattt
      361 acaacactac ccacgcccac aaa
//
LOCUS       DARAII010000381          380 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.500, whole genome shotgun sequence.
ACCESSION   DARAII010000381 DARAII010000000
VERSION     DARAII010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.500"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..341
                     /gene="prfB"
                     /locus_tag="SB143_002319"
     CDS             <1..341
                     /gene="prfB"
                     /locus_tag="SB143_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="recognizes the termination signals UGA and UAA
                     during protein translation a specificity which is
                     dependent on amino acid residues residing in loops of the
                     L-shaped tRNA-like molecule of RF2; in some organisms
                     control of PrfB protein levels is maintained through a +1
                     ribosomal frameshifting mechanism; this protein is similar
                     to release factor 1; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEF9750792.1"
                     /translation="NKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYEL
                     ELMKQQDSANAGEKSEIGWGHQIRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMI
                     EGVLIALKAE"
BASE COUNT          141 a           72 c           74 g           93 t
ORIGIN      
        1 ttaacaaaac agaatcagcc gtaagaatca cacattttcc aaccggtata gtcgtgcaat
       61 gtcaaaatga tagaagccaa cacaaaaaca aagccaccgc ttttaaaatg ctaaaatccc
      121 gcctttatga gcttgaactc atgaaacaac aagatagtgc caatgcaggc gaaaaaagtg
      181 agataggctg ggggcatcaa atccgctctt atgtgctttt cccttatcag caagttaaag
      241 acaatcgcag cggagaagct ttctctcagg tagataatat ccttgatgga gatatcaaaa
      301 aaatgataga aggcgttttg attgctttaa aagcagagta acaggcttta aaaataagta
      361 atttctgcaa aatgtcggta
//
LOCUS       DARAII010000382          376 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.503, whole genome shotgun sequence.
ACCESSION   DARAII010000382 DARAII010000000
VERSION     DARAII010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.503"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>376
                     /locus_tag="SB143_002320"
     CDS             <1..>376
                     /locus_tag="SB143_002320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEF9750793.1"
                     /translation="ALNFYALNDEEYQEIGTIYKKNQALAKARGASYICQNMSKHILE
                     LTQKFRIGDKIGIYCSRGGLRSKSIAVILSELGYRVVRLKGGFKAYRSFLAHYFDNEI
                     NLDFFALCGNTGCGKTELLELLP"
BASE COUNT          120 a           46 c           84 g          126 t
ORIGIN      
        1 gggcgctgaa tttttatgct ttaaatgatg aagaatatca agaaatagga acaatttata
       61 aaaaaaatca agccttagct aaggctaggg gtgcgagtta tatttgtcaa aatatgtcaa
      121 agcatatctt agagcttact caaaaattcc gcataggaga taagattgga atttactgtt
      181 ctcgtggggg tttgcgttca aaatctatcg cagtgatttt gagcgaatta ggctatagag
      241 tggtgcgttt aaagggtggc tttaaagctt atagaagttt tttagcacat tattttgaca
      301 atgaaataaa tttagatttt tttgctcttt gtggtaatac aggctgtgga aaaacagagc
      361 ttttggagct tttacc
//
LOCUS       DARAII010000383          375 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.504, whole genome shotgun sequence.
ACCESSION   DARAII010000383 DARAII010000000
VERSION     DARAII010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 375)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.504"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>375
                     /locus_tag="SB143_002321"
     CDS             <1..>375
                     /locus_tag="SB143_002321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEF9750794.1"
                     /translation="YIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFVNPSAV
                     LVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLKNAIDF
                     EYEVVGKPSIAFYKEALNLIRR"
BASE COUNT          113 a           44 c           80 g          138 t
ORIGIN      
        1 cttatattga tcctttcagc gttttaaaac accttttaag accttgtaaa gttgcggctt
       61 ttggtgcaga tgagtttgta aaaagtcttg aaaatcttgg ttttgagctc gattttgtaa
      121 atcctagtgc tgtgcttgtg gctagttatg atgattttaa atttaaagat tttgccacta
      181 tgatagaatt ggctagaaga gaagttagat ttatagctat gcacgaaact agtatttata
      241 aaaaagatgg taggccttat cctggtgtag gtagcattat ggctatgctt aaaaatgcta
      301 ttgattttga atatgaggtt gtgggtaagc ctagcattgc tttttataaa gaagctttaa
      361 atttaataag aagac
//
LOCUS       DARAII010000384          373 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.505, whole genome shotgun sequence.
ACCESSION   DARAII010000384 DARAII010000000
VERSION     DARAII010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 373)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.505"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>373
                     /gene="ribD"
                     /locus_tag="SB143_002322"
     CDS             <1..>373
                     /gene="ribD"
                     /locus_tag="SB143_002322"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEF9750795.1"
                     /translation="WKYQFLTYPNPAVGCVILDKNEKILAIKAHEKAGCAHAELNAIA
                     HAFKSLRPEISLPKEANALHEFICKNHRGIFKDSIAFVTLEPCSHQGKTPPCAKLFSE
                     LGFKKIFISVKDENEIASKGA"
BASE COUNT          130 a           69 c           68 g          106 t
ORIGIN      
        1 cttggaaata tcagttttta acctacccta atcctgctgt aggttgcgtt atactagaca
       61 aaaatgaaaa aattttagcc ataaaagccc atgaaaaagc aggatgtgct catgcagaac
      121 ttaatgccat agctcatgct tttaaaagct taagacctga aatttcattg cccaaagaag
      181 caaacgcctt acatgagttt atttgcaaaa accatagagg tatttttaaa gatagcatag
      241 cttttgtcac acttgagcct tgctctcatc aaggaaaaac gcctccttgt gcaaaactct
      301 ttagcgagct aggttttaaa aaaattttca tcagcgttaa agatgagaat gagattgcaa
      361 gtaaaggtgc gga
//
LOCUS       DARAII010000385          361 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.512, whole genome shotgun sequence.
ACCESSION   DARAII010000385 DARAII010000000
VERSION     DARAII010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.512"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>361
                     /locus_tag="SB143_002323"
     CDS             <1..>361
                     /locus_tag="SB143_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEF9750796.1"
                     /translation="VEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSA"
BASE COUNT          131 a           42 c           79 g          109 t
ORIGIN      
        1 ctgtagaagc gatcatgaat gatgaaaatg taaaaatcaa tgctttttta ggtccttctc
       61 atgtgagtgt gataacaggt tatggtattt atgagccttt agcagcaaaa tttaaaaccc
      121 ctatagcggt gagtggtttt gagccagttg atattttaga aagtgtgtta aatatcataa
      181 aacaaagcaa tgaaggcact tttaaagtgt ataatcaata caaaagagcc gtaagcaaag
      241 aaggcaatgt taaagcacaa aatttagtaa aaaaatactt tagggtgtgt gattttgaat
      301 ttcgtggctt aggacttatt aaagatggag gcttggagct aaaagaagaa tttagcgctt
      361 a
//
LOCUS       DARAII010000386          361 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.513, whole genome shotgun sequence.
ACCESSION   DARAII010000386 DARAII010000000
VERSION     DARAII010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.513"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>361
                     /locus_tag="SB143_002324"
     CDS             <1..>361
                     /locus_tag="SB143_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750797.1"
                     /translation="DFQTLLDLHKQLPQSYVLLVLSKNSHKVDIIGSKGALTLIDKEA
                     VLSPYPGTGSILPILATNKGDIYNAAILNGYGDMVDRLAQARGIELQHSIGNANRDTI
                     NILRILIYGFICFALLYY"
BASE COUNT          111 a           59 c           62 g          129 t
ORIGIN      
        1 gattttcaaa ctttattaga cttacataag caactcccac aatcttatgt tttgcttgtt
       61 ttatctaaaa attctcataa agtcgatatc ataggttcta aaggagcttt aactttaatc
      121 gataaagaag ctgtgcttag tccttatcca ggaacaggat ctattttgcc tattttagcg
      181 accaataaag gcgatattta taatgcggct attttaaatg gctatggaga tatggttgat
      241 cgtttagcac aagctagagg gattgaattg caacactcta taggcaatgc aaaccgcgat
      301 actatcaata ttttaagaat tttaatctat ggctttattt gctttgcgtt gttatactac
      361 g
//
LOCUS       DARAII010000387          358 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.516, whole genome shotgun sequence.
ACCESSION   DARAII010000387 DARAII010000000
VERSION     DARAII010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.516"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            83..>358
                     /gene="ptmF"
                     /locus_tag="SB143_002325"
     CDS             83..>358
                     /gene="ptmF"
                     /locus_tag="SB143_002325"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HEF9750798.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLNHEVSLLSLSAKKEEFKNTPIY
                     RSLKECDLNEFDLFIIANITTEHFNTLKTLDDLVKDKTILVEKPLFEK"
BASE COUNT          143 a           48 c           52 g          115 t
ORIGIN      
        1 aggtaaatac ctatatcatc aacgattatt ggattgacat tggaagacca gatgagtttt
       61 taaaagccaa tgaggatttt aaatgaaagt cttaatcata ggttttggaa gcataggaaa
      121 aaagcatttt ttagccttaa aaaatttaaa tcatgaagta agtttgcttt ctttaagtgc
      181 taaaaaagaa gaatttaaaa acactccaat ttatcgctct ttgaaagaat gtgatttaaa
      241 cgaatttgat ctttttatca tcgcaaatat caccacagag cattttaaca ccttaaaaac
      301 tttagatgat cttgtaaaag ataaaaccat actcgtagaa aaacctttat ttgaaaaa
//
LOCUS       DARAII010000388          354 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.520, whole genome shotgun sequence.
ACCESSION   DARAII010000388 DARAII010000000
VERSION     DARAII010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.520"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>354)
                     /locus_tag="SB143_002326"
     CDS             complement(<1..>354)
                     /locus_tag="SB143_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEF9750799.1"
                     /translation="KEKEKLYMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKIL
                     SSLKIKDFDALMSTLQSADKFKVLLAQVLFLGADVLFLDEPTNNLDLEAISWLENELL
                     RHEGTLVVISHDRHF"
BASE COUNT          117 a           82 c           40 g          115 t
ORIGIN      
        1 aaaaatgcct atcatgagaa atcaccacca aagttccttc atgtcttaaa agttcatttt
       61 caagccaaga aatcgcctct aaatcaaggt tatttgtagg ctcatctaaa aaaagcacat
      121 ccgcacccaa aaacaacact tgagctagta agactttaaa tttatccgca ctttgcaagg
      181 tgctcatcaa agcatcaaaa tctttaatct ttaaagaact taaaattttt tcacaacgcg
      241 tttcacaatc ataatttgga tcttcttcgg ccgttattat ctcaagctca cctaaacgct
      301 cattgatctc atctgtaaat tcctcgctca tataaagctt ttctttttct ttta
//
LOCUS       DARAII010000389          354 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.521, whole genome shotgun sequence.
ACCESSION   DARAII010000389 DARAII010000000
VERSION     DARAII010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 354)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.521"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>354
                     /locus_tag="SB143_002327"
     CDS             <1..>354
                     /locus_tag="SB143_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EscN/YscN/HrcN family type III secretion system
                     ATPase"
                     /protein_id="HEF9750800.1"
                     /translation="KVVALIGERGREIPEFIQKNLGGKLDDTVIIVATSDDSALMRKY
                     GAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTTKGYPPSVLSLLP
                     QLMERTGKEEGKGTIT"
BASE COUNT          120 a           52 c           85 g           97 t
ORIGIN      
        1 aaagtagtcg cacttatagg cgaaagaggg cgcgaaattc ctgaatttat acaaaaaaat
       61 ttaggtggaa agcttgatga tacagtgatt atcgttgcaa cgagtgatga tagtgcttta
      121 atgcgaaaat atggggcatt ttgtgctatg agtgtggctg aatactttaa agaacaaggt
      181 aaagatgtac tttttatcat ggatagtgta acgcgttttg ctatggcgca aagagagata
      241 ggacttgctc ttggtgaacc ccctactaca aaaggctatc ctccaagcgt tttaagtctt
      301 ttgcctcaac ttatggaaag aacaggaaaa gaagaaggta aaggaactat aaca
//
LOCUS       DARAII010000390          349 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.523, whole genome shotgun sequence.
ACCESSION   DARAII010000390 DARAII010000000
VERSION     DARAII010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 349)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 349)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.523"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>349
                     /locus_tag="SB143_002328"
     CDS             <1..>349
                     /locus_tag="SB143_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF520 family protein"
                     /protein_id="HEF9750801.1"
                     /translation="DKQELKNAFEQAKKELDSRYDLKGIKCEIGFSEKDSVFKLHSSS
                     EAKLDVLKDIVISKLIKRGINSNAIKELSRESGAMFRLNLKANDSIDSENAKKINKAI
                     KDSKLKVSSSIRGD"
BASE COUNT          134 a           37 c           72 g          106 t
ORIGIN      
        1 gataagcaag aacttaaaaa tgctttcgag caagcaaaaa aagagcttga ttctcgctat
       61 gatttaaaag gtattaagtg tgaaattgga ttcagtgaga aagacagtgt ttttaaactt
      121 cattcttcaa gtgaggcaaa gcttgatgtt ttgaaagata ttgtgatttc aaaacttata
      181 aaaaggggca ttaattctaa tgctattaaa gagctttcac gcgaaagtgg agcaatgttt
      241 cgtttgaatt taaaagctaa tgatagcatt gatagtgaaa atgctaagaa aattaataag
      301 gctattaaag atagtaaatt aaaggtaagt tcttccatac gaggagatg
//
LOCUS       DARAII010000391          347 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.526, whole genome shotgun sequence.
ACCESSION   DARAII010000391 DARAII010000000
VERSION     DARAII010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.526"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>347
                     /locus_tag="SB143_002329"
     CDS             <1..>347
                     /locus_tag="SB143_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEF9750802.1"
                     /translation="KSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAVLNEWAKQSG
                     NDLLIFEEKIIVQDEVLGLCELFGYEAFELANEGTFILCVEKEDELKALEILKKYNVN
                     ASIIGEVLEEKKA"
BASE COUNT          121 a           31 c           90 g          105 t
ORIGIN      
        1 ttaaaagtga ttgtaaggct ttggataaag aggttttaga gcttttagaa aaagatataa
       61 aggttgtagc aatgagagat gctactcgtg gggggcttag tgcggtttta aatgagtggg
      121 caaagcaaag cggaaatgat cttttgatct ttgaagaaaa aatcatcgtt caagatgagg
      181 ttttaggact ttgcgagctt tttggttatg aagcttttga gcttgcaaat gaaggcactt
      241 ttatactgtg cgtggaaaaa gaagatgagt taaaggcttt ggaaatttta aaaaaataca
      301 atgtaaatgc tagtatcata ggagaagttt tagaagagaa aaaagct
//
LOCUS       DARAII010000392          345 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.528, whole genome shotgun sequence.
ACCESSION   DARAII010000392 DARAII010000000
VERSION     DARAII010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.528"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..213)
                     /locus_tag="SB143_002330"
     CDS             complement(<1..213)
                     /locus_tag="SB143_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEF9750803.1"
                     /translation="MGFRINTNVAALNAKASADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAINNGNDA"
BASE COUNT          114 a           63 c           45 g          123 t
ORIGIN      
        1 agcatcatta ccattgttta tagcttgacc taaagtatta gcttgagatc ttaaactgtc
       61 tgctatagcc atccctgaag catcatctgc tgcggagtta attctaagac ctgaactaag
      121 tctgcttaaa gaagcatcta aacttttact atttaaatca gcgcttgctt ttgcatttaa
      181 agctgcaaca ttggtgttaa tacgaaatcc cattttaaat ccttttaaaa aaattcaagc
      241 tcatccatga acttgttaaa tgctatatcg tgcaatcaaa aaaatatttt atactttagc
      301 aataaaattt catacttttg acaaagactt gtatttttgt tctaa
//
LOCUS       DARAII010000393          344 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.530, whole genome shotgun sequence.
ACCESSION   DARAII010000393 DARAII010000000
VERSION     DARAII010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.530"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>344
                     /locus_tag="SB143_002331"
     CDS             <1..>344
                     /locus_tag="SB143_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEF9750804.1"
                     /translation="LLTKKFNDEGEHLAFGGHVDVVPAGEGWKNDPFEPLEEEGFIYA
                     RGAQDMKSGVAAFIDAVKDVSFKGRRLSLILTSDEEGEAKYGTKAVLEWMKEKNMLPD
                     YAVVAEPTCVKK"
BASE COUNT          107 a           43 c           96 g           98 t
ORIGIN      
        1 ttgcttacta agaaatttaa tgatgagggt gagcatttag cttttggtgg gcatgtagat
       61 gtcgttcctg cgggtgaggg ttggaaaaat gatccttttg agcctttgga ggaagaaggc
      121 tttatctatg caaggggtgc acaggatatg aaaagtggcg tagctgcttt tatcgatgct
      181 gtaaaggatg ttagctttaa agggcggaga ttaagcctta ttttaacaag cgatgaagaa
      241 ggcgaggcaa aatacggaac aaaagctgtt ttagaatgga tgaaagaaaa aaatatgcta
      301 cctgattatg ctgtggttgc tgaacctact tgcgtaaaaa aaat
//
LOCUS       DARAII010000394          338 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.533, whole genome shotgun sequence.
ACCESSION   DARAII010000394 DARAII010000000
VERSION     DARAII010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 338)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.533"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>338
                     /locus_tag="SB143_002332"
     CDS             <1..>338
                     /locus_tag="SB143_002332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliM/FliN family flagellar motor switch protein"
                     /protein_id="HEF9750805.1"
                     /translation="RDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEFL
                     ELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEIL
                     EKYEEERKAKA"
BASE COUNT          135 a           44 c           66 g           93 t
ORIGIN      
        1 cgcgatatta tgatgggtga aacttcggct aaaaaatcgc gtaataaaga gcttaaaact
       61 ctcatcggtc gtgctgaagt agtttatgaa gcgattttag gaaaaactct catcaatgtt
      121 catgaatttt tagaactcaa acaaggcgat attttaagac tagatagaga agctgatgat
      181 aaagccatag taagcataga taaaaaagat gttttcttag cgcaaattgg attgcatcgt
      241 tttagaaaat ctattaaaat tttagaactt atacgcacag ataaagatga aatcaaagaa
      301 attttggaaa aatacgaaga agagcgtaaa gctaaagc
//
LOCUS       DARAII010000395          333 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.536, whole genome shotgun sequence.
ACCESSION   DARAII010000395 DARAII010000000
VERSION     DARAII010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..333
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.536"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>333
                     /locus_tag="SB143_002333"
     CDS             <1..>333
                     /locus_tag="SB143_002333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEF9750806.1"
                     /translation="QSGQSQFAQLPEHYANLDMGVRLFEEKLTLGALAKYTGKAKRIV
                     PVGSLDDDPSNPDAMAPLKTTDELPKIPTIVDLYANYKILKNFTIKAEVQNLFDKNYM
                     DALYSYNTG"
BASE COUNT          126 a           60 c           55 g           92 t
ORIGIN      
        1 acaatcaggc caaagtcaat ttgcccaact tccagagcat tatgctaatc ttgatatggg
       61 tgtaagatta tttgaagaaa agctaactct aggagctctt gctaaataca caggaaaagc
      121 aaagagaata gttcctgtag gtagcttaga tgatgatcca agcaatcctg atgctatggc
      181 tccgcttaaa actacagatg aattgccaaa aataccaact atcgttgatc tttatgcaaa
      241 ttataaaatt ttgaaaaact ttacaatcaa agcagaagta caaaatttat ttgacaaaaa
      301 ctatatggat gcactttact cttacaacac agg
//
LOCUS       DARAII010000396          332 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.538, whole genome shotgun sequence.
ACCESSION   DARAII010000396 DARAII010000000
VERSION     DARAII010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.538"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>332
                     /locus_tag="SB143_002334"
     CDS             <1..>332
                     /locus_tag="SB143_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase"
                     /protein_id="HEF9750807.1"
                     /translation="LHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQKAKDYSKEFPLN
                     LVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELASEQKIKAGDMIWVHSPEGTK
                     IHVRVKFNP"
BASE COUNT          112 a           54 c           70 g           96 t
ORIGIN      
        1 cttcattctc caagaaatga tttggtgcaa aaatatccta gttttgagga tcaaaaagcg
       61 ctttatcgtg tggatacaaa atttgtttct gtgcaaaagg ctaaggatta ttcaaaagaa
      121 ttcccactca acctagtcac agcaagactt gtgaatttaa atggtgcagg tatggaaaat
      181 agggcctcga tgtatcttac tcgtttaaca cctgagatgt tttgtgagat aaatcctgaa
      241 cttgcaagcg agcaaaagat taaagcaggg gatatgattt gggtgcattc tccagaagga
      301 actaaaattc atgtgagagt aaaattcaat cc
//
LOCUS       DARAII010000397          332 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.539, whole genome shotgun sequence.
ACCESSION   DARAII010000397 DARAII010000000
VERSION     DARAII010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 332)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 332)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..332
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.539"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..259
                     /locus_tag="SB143_002335"
     CDS             <1..259
                     /locus_tag="SB143_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEF9750808.1"
                     /translation="WQEISKFVRLGVRILKNELHAGGVNIGMNLSKDAGAGIASHCHY
                     HLVPRWAGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNVK"
BASE COUNT          110 a           42 c           75 g          105 t
ORIGIN      
        1 ttggcaagag ataagtaaat ttgtgcgttt aggggtaaga attttaaaaa atgaactcca
       61 tgcaggcggg gtaaatatcg gtatgaattt gagtaaagat gcaggtgctg ggatagcttc
      121 tcattgtcat tatcatctag tgccgcgttg ggcaggggat actaatttta tcaccactat
      181 aggagaaact agggtttgtg gtaccaatat agaacaagtt taccaaaaac ttgttttggc
      241 atttaaaaat gttaaatgaa gtagattttg tagaatttca aaaagaaaat ttctctcttt
      301 taatcgatgc aagaagccct agggaatttt ta
//
LOCUS       DARAII010000398          331 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.540, whole genome shotgun sequence.
ACCESSION   DARAII010000398 DARAII010000000
VERSION     DARAII010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.540"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>331)
                     /locus_tag="SB143_002336"
     CDS             complement(<1..>331)
                     /locus_tag="SB143_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEF9750809.1"
                     /translation="KAKGMKIQHFKAHGALYNMAAIDENLALALCEAVASFDDGIIFL
                     GLSNSAMEEVAKKKGLKYANEVFADRAYNDDGTLVSRKLEGAVITDEDLAIKRVIKMI
                     KESKVTSI"
BASE COUNT           93 a           72 c           42 g          124 t
ORIGIN      
        1 ttatgcttgt aactttgctt tcttttatca tttttatcac gcgttttatc gctaaatctt
       61 catctgtgat aactgcacct tcaagttttc ttgaaaccaa agtaccatca tcattataag
      121 cgcgatctgc aaaaacttcg tttgcgtatt ttaatccctt tttctttgca acttcttcca
      181 tagcagaatt actaagccct agaaaaataa taccatcatc aaaactagcc actgcttcac
      241 aaagtgctag agctagattt tcatctattg cagccatatt ataaagtgca ccatgggctt
      301 taaaatgttg tattttcata cctttggctt t
//
LOCUS       DARAII010000399          330 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.541, whole genome shotgun sequence.
ACCESSION   DARAII010000399 DARAII010000000
VERSION     DARAII010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..330
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.541"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>330
                     /locus_tag="SB143_002337"
     CDS             <1..>330
                     /locus_tag="SB143_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750810.1"
                     /translation="TIDLSEELCSGKIYLVDIEEERVDIQLLILFDMKDMFEYLSLYE
                     MFVNNSFYKQFCEKTWCETDEFCKKNIEIVIRDSGLNSNLSFQSYFHFLQNIPSMLKS
                     IPFQRILN"
BASE COUNT          115 a           35 c           53 g          127 t
ORIGIN      
        1 acgatagatt tgagtgaaga gctttgtagt ggaaaaattt atcttgtgga tatcgaagaa
       61 gaaagagtag atattcaact gcttatactt tttgatatga aagatatgtt tgagtactta
      121 agtttatatg aaatgtttgt aaataattct ttttataaac aattttgtga aaagacttgg
      181 tgtgaaactg atgagttttg taaaaaaaat atagaaattg tgatacgtga ttcaggtcta
      241 aattcaaatc tttctttcca gtcttatttt cattttttac aaaacatccc ttctatgctt
      301 aaaagcattc cttttcaaag aatcttaaat
//
LOCUS       DARAII010000400          327 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.543, whole genome shotgun sequence.
ACCESSION   DARAII010000400 DARAII010000000
VERSION     DARAII010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.543"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..163
                     /locus_tag="SB143_002338"
     CDS             <1..163
                     /locus_tag="SB143_002338"
                     /EC_number="1.2.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase subunit alpha"
                     /protein_id="HEF9750811.1"
                     /translation="SKFKKVMVSELNMGQYLEEIERVSSRRDFISLHRANGRPITPSE
                     IIAKVKENI"
     gene            165..>327
                     /locus_tag="SB143_002339"
     CDS             165..>327
                     /locus_tag="SB143_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="catalyzes the coenzyme A-dependent formation of
                     succinyl-CoA from 2-oxoglutarate and ferredoxin; Derived
                     by automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEF9750812.1"
                     /translation="MAFNYDEYLRTDKLPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCS"
BASE COUNT          106 a           36 c           79 g          106 t
ORIGIN      
        1 aagcaaattt aaaaaggtaa tggtaagcga attaaatatg ggacagtatc ttgaggagat
       61 tgaaagagta agttctcgtc gtgattttat tagcttacat cgtgcaaatg gtcgtcctat
      121 aacacctagc gaaatcattg ctaaagtaaa ggagaatata taaaatggcg tttaattatg
      181 atgaatattt aagaactgat aaacttccta ctcaatggtg ttggggttgt ggcgatggtg
      241 ttgttttaaa atgtattatc cgcgcgatag aaaaacttgg ttggaatatg gatgatgttt
      301 gtcttgtttc aggtatagga tgtagcg
//
LOCUS       DARAII010000401          326 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.545, whole genome shotgun sequence.
ACCESSION   DARAII010000401 DARAII010000000
VERSION     DARAII010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.545"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>326
                     /locus_tag="SB143_002340"
     CDS             <1..>326
                     /locus_tag="SB143_002340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEF9750813.1"
                     /translation="IPCVLLKNSQLVKSIEFKDFRTIGHLTSTMRIYNARNVDELIIL
                     DIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISINSKALED
                     MDFISKA"
BASE COUNT          119 a           39 c           60 g          108 t
ORIGIN      
        1 atcccttgcg tgttattaaa aaattctcaa cttgttaaaa gtatagaatt taaagatttt
       61 cgtactatag gacacttaac ttcaacgatg agaatttata atgcacgcaa tgttgatgaa
      121 cttattatct tagatataga tgcttcaaaa agtggtgaga tagactttga aagtatagaa
      181 gatcttgcta aagaatgttt tatgccttta accataggtg gggggataaa aacccttgaa
      241 gatatacaaa agattttaaa tttgggtgcg gataaaattt ctatcaattc taaggcctta
      301 gaagatatgg attttataag taaagc
//
LOCUS       DARAII010000402          326 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.546, whole genome shotgun sequence.
ACCESSION   DARAII010000402 DARAII010000000
VERSION     DARAII010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.546"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            4..>326
                     /locus_tag="SB143_002341"
     CDS             4..>326
                     /locus_tag="SB143_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEF9750814.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKILLENYKPNKIIIYSRDELKQF
                     EMSSIFNANCMRYFIGDIRDKERLSVAMRDVDFVIHAAAMKHVPVAEYNPMECIKTNI
                     HGAQNV"
BASE COUNT          112 a           47 c           58 g          109 t
ORIGIN      
        1 caaatgttta atggaaaaaa tatcttaatt actggtggta caggctcttt tggaaaaacc
       61 tatactaaaa ttttattaga aaattataag cctaataaaa tcatcattta ttctcgcgat
      121 gagcttaaac aatttgaaat gtcaagcatt tttaatgcta attgcatgcg ttattttata
      181 ggtgatataa gagataaaga acgcttaagc gttgctatgc gtgatgtaga ttttgttata
      241 catgctgctg cgatgaaaca tgttcctgtt gctgagtata atcctatgga atgtatcaaa
      301 accaatatcc acggcgcgca aaatgt
//
LOCUS       DARAII010000403          323 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.548, whole genome shotgun sequence.
ACCESSION   DARAII010000403 DARAII010000000
VERSION     DARAII010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..323
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.548"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>323
                     /locus_tag="SB143_002342"
     CDS             <1..>323
                     /locus_tag="SB143_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEF9750815.1"
                     /translation="YALKNSHLSTMNFMSNVSGVENVDLNNFIGIKEVNFRVGEDKEC
                     IKLIFIDRNDFVLMGISSNEASKNAIINIANNPKQEFQNLDFTSNSKNKACVALSKNE
                     NFKNLA"
BASE COUNT          136 a           38 c           56 g           93 t
ORIGIN      
        1 tatgccttaa aaaatagtca tttaagcact atgaatttta tgagcaatgt aagtggagta
       61 gaaaatgtcg atcttaacaa ttttataggc ataaaagaag taaattttag ggtcggagag
      121 gataaagagt gtataaaact gattttcatc gatagaaatg attttgtact gatgggaatt
      181 tctagtaatg aagcaagcaa aaatgccata atcaatatag ccaataaccc caaacaagaa
      241 tttcaaaact tagattttac aagcaattca aaaaataaag cttgcgtggc actaagtaaa
      301 aatgagaatt ttaaaaattt agc
//
LOCUS       DARAII010000404          319 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.550, whole genome shotgun sequence.
ACCESSION   DARAII010000404 DARAII010000000
VERSION     DARAII010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.550"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>319)
                     /locus_tag="SB143_002343"
     CDS             complement(<1..>319)
                     /locus_tag="SB143_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEF9750816.1"
                     /translation="WFMVFNKAKMYLKKAGTFILVASLLIWFASNFPNNESNLDDFSA
                     QERAVEQSYLGQFGKTIEPIFSPLELDWKLSVSLVSGLAAKEVMISTMGVLYSLGKEV
                     DETS"
BASE COUNT          104 a           68 c           47 g          100 t
ORIGIN      
        1 tgcttgtttc atccacttct tttccaagag aataaagcac ccccatggta gaaatcatta
       61 cttcttttgc ggccaaacca ctgactaaag atacgcttaa tttccaatca agctcaagcg
      121 gagaaaaaat aggctcaatt gttttgccaa attgccctag ataactttgc tcaacagctc
      181 tttcttgagc gctaaaatca tctaaattgc tttcattgtt tggaaaattg cttgcaaacc
      241 atataagtaa ggaagctaca agtataaagg tccctgcttt tttaagatac attttagctt
      301 tattaaagac cataaacca
//
LOCUS       DARAII010000405          318 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.551, whole genome shotgun sequence.
ACCESSION   DARAII010000405 DARAII010000000
VERSION     DARAII010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 318)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 318)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..318
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.551"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>318
                     /locus_tag="SB143_002344"
     CDS             <1..>318
                     /locus_tag="SB143_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEF9750817.1"
                     /translation="KQGFANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISA
                     FQSELFNRYLSKRVELSHFSNDFTEKELAQIYSISKEEAKELKKQEQFFKLLKGEVLG
                     HYPF"
BASE COUNT          112 a           36 c           67 g          103 t
ORIGIN      
        1 aaacaggggt ttgcaaatta ttttggttat caacgctttg gaaaatttgg ggacaattac
       61 aaagaagggc ttgaaatttt acgcggtaaa aaaatgaaaa atgtcaaaat gaaagagttt
      121 ttaatctctg cttttcaaag tgagcttttt aatcgttatt tgagcaaaag agtggagttg
      181 tcgcattttt caaatgattt tactgaaaaa gagttggcac aaatttatag tatttccaaa
      241 gaagaagcca aggagcttaa aaaacaagag cagtttttta agcttttaaa aggcgaggtt
      301 ttggggcatt atcctttt
//
LOCUS       DARAII010000406          312 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.560, whole genome shotgun sequence.
ACCESSION   DARAII010000406 DARAII010000000
VERSION     DARAII010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 312)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 312)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.560"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            131..>312
                     /locus_tag="SB143_002345"
     CDS             131..>312
                     /locus_tag="SB143_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate ABC transporter"
                     /protein_id="HEF9750818.1"
                     /translation="METLSQTFAERKPPLYKRMFKSLGFWVIVGIVAGIVLGYVNKEM
                     AIASKPGVDYFISALKV"
BASE COUNT          107 a           31 c           53 g          121 t
ORIGIN      
        1 ttagtaacac gattaaaaaa attgatttta ctaaaaactt gttttaatta tttaaactat
       61 gttctattta ttttttgcta aacttttaga attaacttaa tctctaaaag tggaattata
      121 aggagttatt ttggaaactt taagtcaaac ctttgcagaa agaaaacctc cattatataa
      181 acgtatgttt aaaagtttgg gtttttgggt tattgtaggt attgttgcag gcattgtgct
      241 tggctatgta aataaagaaa tggctatagc gagtaaacct ggagttgatt attttataag
      301 cgctttaaaa gt
//
LOCUS       DARAII010000407          307 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.566, whole genome shotgun sequence.
ACCESSION   DARAII010000407 DARAII010000000
VERSION     DARAII010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 307)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 307)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.566"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>307
                     /locus_tag="SB143_002346"
     CDS             <1..>307
                     /locus_tag="SB143_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="with FlgK acts as a hook filament junction protein
                     to join the flagellar filament to the hook; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin biosynthesis protein FlgL"
                     /protein_id="HEF9750819.1"
                     /translation="LYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQA
                     DDKTELNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFE"
BASE COUNT          126 a           47 c           50 g           84 t
ORIGIN      
        1 ctctttatgg taatactcca aataataaag tagtagaagt aagtatgaat gatagtggtc
       61 aaattcaaat tacagatcta aagcaaggta ataataaact cgattttcat gctgtagctt
      121 tcacaccaca agctgatgat aaaactgaat taaataatat tatccaagca gcacaggatg
      181 aaggcattac aatggaagat gttacaaaca gggttatgac tgctgcacta ggaaatccca
      241 ataatggaga tattacaaat ttaaataatc ctgtaaccat tcaaattaac ggacaaaact
      301 ttgaaat
//
LOCUS       DARAII010000408          303 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.571, whole genome shotgun sequence.
ACCESSION   DARAII010000408 DARAII010000000
VERSION     DARAII010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.571"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>303)
                     /locus_tag="SB143_002347"
     CDS             complement(<1..>303)
                     /locus_tag="SB143_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter"
                     /protein_id="HEF9750820.1"
                     /translation="IDGLLVYVALLISLGGLIVSWFVGIKLPGLEYNNQKAEAAFRKE
                     LVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVIVPFLIM"
BASE COUNT          110 a           53 c           40 g          100 t
ORIGIN      
        1 catgattaaa aatggaacaa taactatcat ttgttcaaat aaaatcaacc aaatattaaa
       61 atatccgtag tgtaaaaaaa gtcttttata attgaattta agtcctgtaa aaagctctat
      121 catggtttca tttttggcgt attctttgcg gttatcttca gcataaacaa gctcttttct
      181 aaaagctgct tcggcttttt gattgttgta ttcaagtcct ggaagtttaa ttcctacaaa
      241 ccacgatacg attaatcctc ctaaagaaat caaaagtgca acataaacaa gcaaaccatc
      301 gat
//
LOCUS       DARAII010000409          302 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.573, whole genome shotgun sequence.
ACCESSION   DARAII010000409 DARAII010000000
VERSION     DARAII010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.573"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>302
                     /locus_tag="SB143_002348"
     CDS             <1..>302
                     /locus_tag="SB143_002348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OPT/YSL family transporter"
                     /protein_id="HEF9750821.1"
                     /translation="LAYPEGRAAAEILKVANKDQSNKKGKQGIKEIALGSFIAAIFSL
                     LSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAGAIALFVGMFLAWG"
BASE COUNT           86 a           37 c           69 g          110 t
ORIGIN      
        1 cttgcttatc ctgagggtag agccgcagct gaaattttaa aagtagccaa taaagatcag
       61 agtaataaaa aaggaaaaca aggcattaaa gaaatagcat taggctcttt tatagctgct
      121 atttttagtt tattaagcaa tggttttaaa ctcgccgcaa gtgagagtaa tttcgctttt
      181 atttggaata aaatggcttt tggtttttct atgggatatt ctttggcact tttaggagca
      241 ggttatttag ttggtttagc aggtgctata gctctttttg taggtatgtt tttagcttgg
      301 gg
//
LOCUS       DARAII010000410          296 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.580, whole genome shotgun sequence.
ACCESSION   DARAII010000410 DARAII010000000
VERSION     DARAII010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.580"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>296
                     /locus_tag="SB143_002349"
     CDS             <1..>296
                     /locus_tag="SB143_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEF9750822.1"
                     /translation="IDSIDITEQTTTNYTHFSIGTSLQNAKTTPMLSDFALCKECKKE
                     FFDEKNPRFLYPFITCTHCGPRFSIIKNLPYDRCNTTMEALKMCEFCKSEYEDP"
BASE COUNT          105 a           46 c           50 g           95 t
ORIGIN      
        1 atagatagta ttgatatcac agagcaaacg actacaaatt atacccattt tagcataggt
       61 acttctttgc aaaatgcaaa aactactcca atgcttagtg attttgcact ttgtaaagag
      121 tgtaaaaaag aattttttga tgaaaaaaat ccgcgttttt tatatccttt tatcacttgt
      181 acgcattgtg ggccaagatt tagcatcatt aaaaatctcc cttatgatag gtgcaatacc
      241 acaatggaag cattgaaaat gtgtgagttt tgcaaaagtg agtatgaaga tcctaa
//
LOCUS       DARAII010000411          290 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.584, whole genome shotgun sequence.
ACCESSION   DARAII010000411 DARAII010000000
VERSION     DARAII010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.584"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>290
                     /locus_tag="SB143_002350"
     CDS             <1..>290
                     /locus_tag="SB143_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEF9750823.1"
                     /translation="KAMDEQLKILDTIKTKATQAAQDGQSLKTRTMLQADINRLMEEL
                     DNIANTTSFNGKQLLSGNFINQEFQIGASSNQTVKASIGATQSSKIGLTRFE"
BASE COUNT          115 a           50 c           49 g           76 t
ORIGIN      
        1 ataaggctat ggatgagcaa cttaaaatct tagatacaat caaaactaag gcaactcaag
       61 cggctcaaga tggacaaagt ttaaaaacaa gaaccatgct tcaagcagat atcaaccgtt
      121 taatggaaga acttgacaat atcgcaaata ctacttcatt taacggtaag caacttttaa
      181 gtggaaattt tatcaatcaa gaatttcaaa tcggtgctag ttcaaatcaa actgtaaaag
      241 caagtatagg agcaacccag tcttctaaga taggtttaac tcgttttgaa
//
LOCUS       DARAII010000412          289 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.587, whole genome shotgun sequence.
ACCESSION   DARAII010000412 DARAII010000000
VERSION     DARAII010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 289)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 289)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.587"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>289
                     /locus_tag="SB143_002351"
     CDS             <1..>289
                     /locus_tag="SB143_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEF9750824.1"
                     /translation="LLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIYDKTHNVFMYE
                     NLEEELNFFYQSILEKTPRYPFVCIYGIGNALLIKNLAKHYKHLFVFESEI"
BASE COUNT          113 a           29 c           36 g          111 t
ORIGIN      
        1 ctttattaag tggggtaaat gaacccttag gaaataaact tttaaatttc atacaaaata
       61 aaacttgttc tcgttttaat atagatgaaa atttaaatat ctatgataaa actcataatg
      121 tttttatgta tgaaaattta gaagaagaat taaatttttt ctatcaaagt attttagaaa
      181 aaactcctag atatcctttt gtatgtattt atggtatagg caatgcttta ctgattaaaa
      241 atttagctaa acactataaa catctttttg tatttgaaag tgaaatcga
//
LOCUS       DARAII010000413          284 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.592, whole genome shotgun sequence.
ACCESSION   DARAII010000413 DARAII010000000
VERSION     DARAII010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.592"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>284
                     /gene="aspS"
                     /locus_tag="SB143_002352"
     CDS             <1..>284
                     /gene="aspS"
                     /locus_tag="SB143_002352"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="catalyzes a two-step reaction, first charging an
                     aspartate molecule by linking its carboxyl group to the
                     alpha-phosphate of ATP, followed by transfer of the
                     aminoacyl-adenylate to its tRNA; contains discriminating
                     and non-discriminating subtypes; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEF9750825.1"
                     /translation="KRCELEVGDVVFFGAGVKKTVLDYMGRFRIFLAGELNLINPDAL
                     EFLWVVDFPMFEQNDDGSYSAMHHPFTMPKNIDEADLEEISSIAYDVVLNG"
BASE COUNT           83 a           40 c           64 g           97 t
ORIGIN      
        1 aagcgttgtg aacttgaagt aggcgatgtg gtattttttg gcgcaggggt taaaaaaact
       61 gtgcttgatt atatgggaag gtttagaatt ttcctagctg gagaacttaa tttaatcaac
      121 cctgatgctt tggaattttt atgggtagtt gattttccta tgtttgaaca aaatgatgat
      181 ggaagttatt ctgcaatgca ccaccctttc actatgccaa aaaatatcga tgaggccgac
      241 ttagaagaaa tatcatctat cgcttatgat gttgtactta atgg
//
LOCUS       DARAII010000414          284 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.593, whole genome shotgun sequence.
ACCESSION   DARAII010000414 DARAII010000000
VERSION     DARAII010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.593"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            5..>284
                     /locus_tag="SB143_002353"
     CDS             5..>284
                     /locus_tag="SB143_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell filamentation protein Fic"
                     /protein_id="HEF9750826.1"
                     /translation="MIDKVLKFLDDGIPKNDFDRQLLASNLVGATNLIELNKKERIIT
                     LQAAKKLELNPIKGNFDYQHLKDIHKALFKDVYTWAGKDRMEVGLHGNF"
BASE COUNT          117 a           29 c           47 g           91 t
ORIGIN      
        1 gtaaatgatt gataaagttt tgaaattttt agatgatggt attcctaaaa atgattttga
       61 tagacaactt ttagcttcta atttagtagg cgcaacaaat ttaatagagt taaataaaaa
      121 agaaagaata ataactctac aagccgctaa aaaattagag cttaatccaa ttaaaggcaa
      181 ttttgactat caacacttaa aagatataca taaagcactt tttaaagatg tttatacttg
      241 ggctggaaaa gatagaatgg aagtaggttt acatggaaat tttg
//
LOCUS       DARAII010000415          284 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.594, whole genome shotgun sequence.
ACCESSION   DARAII010000415 DARAII010000000
VERSION     DARAII010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.594"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>284)
                     /locus_tag="SB143_002354"
     CDS             complement(<1..>284)
                     /locus_tag="SB143_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEF9750827.1"
                     /translation="SIMKYALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKD
                     TIFCTLGDLLRVPGSEISLLDLRAKGADVRALYSPLEVLEIAKQNLNKNI"
BASE COUNT           96 a           61 c           46 g           81 t
ORIGIN      
        1 tgatattttt gtttaaattt tgcttagcaa tttccaaaac ctcaagcgga gaataaagcg
       61 ctctaacatc agccccttta gctcttaaat ccagtaaaga aatttcactt ccaggcaccc
      121 ttaaaagatc ccctaaggta caaaaaatcg tatctttcat ggaggctagc ttaatagctg
      181 tatcaatgcg aactcttggc ataacacaaa caggacatcc tggcccatgg ataaagttaa
      241 tttcctttgg caaaatagaa ggcagggcat atttcataat acta
//
LOCUS       DARAII010000416          278 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.599, whole genome shotgun sequence.
ACCESSION   DARAII010000416 DARAII010000000
VERSION     DARAII010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.599"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>278)
                     /locus_tag="SB143_002355"
     CDS             complement(<1..>278)
                     /locus_tag="SB143_002355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEF9750828.1"
                     /translation="FLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNNTYSFAANEAFI
                     MNRIADLGMLLGIFWLYIQAGTLKYNEVFAIAQNLDHNALVLIASCLF"
BASE COUNT          116 a           61 c           31 g           70 t
ORIGIN      
        1 ataaataaac aacttgcaat caaaaccaaa gcattatgat ctaaattttg tgctatggca
       61 aatacttcat tgtattttaa agtgcctgct tggatataaa gccaaaaaat tcccaaaagc
      121 atacccaaat ccgcaatacg attcataata aaagcttcat tagctgcaaa agaataggta
      181 ttgtttttat accaaaaacc gatcaaaagc caagagcaaa gccctacccc ttcccagcct
      241 acaaaaagtc ctaaaaaatt atcactcatc actaaaaa
//
LOCUS       DARAII010000417          276 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.600, whole genome shotgun sequence.
ACCESSION   DARAII010000417 DARAII010000000
VERSION     DARAII010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 276)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 276)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.600"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>276
                     /locus_tag="SB143_002356"
     CDS             <1..>276
                     /locus_tag="SB143_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750829.1"
                     /translation="HTATENGSEVDSLQNAMGSLMDVVNSSKETVQTFVANSQNITSV
                     VEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQ"
BASE COUNT           88 a           44 c           65 g           79 t
ORIGIN      
        1 ctcatacagc tacagaaaat ggctcagaag tggattcttt gcaaaatgct atgggttctt
       61 taatggatgt tgtaaattca agcaaggaaa cagtgcaaac ttttgtggct aattcccaaa
      121 atattacttc agtggttgaa gtaatacgtg atatagccga tcaaaccaat cttctagctt
      181 taaatgctgc tattgaagct gcgcgtgctg gagaacatgg tagaggcttt gcggttgtgg
      241 ctgatgaagt tagaaagtta gcagaaagaa ctcaaa
//
LOCUS       DARAII010000418          275 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.602, whole genome shotgun sequence.
ACCESSION   DARAII010000418 DARAII010000000
VERSION     DARAII010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 275)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.602"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            77..>275
                     /locus_tag="SB143_002357"
     CDS             77..>275
                     /locus_tag="SB143_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEF9750830.1"
                     /translation="MKNTIKLALLGAVITGVFSACSSEPKTVQYYEDPKNATELEAKI
                     KECDKNANSAKTDTECANAYEA"
BASE COUNT          124 a           37 c           40 g           74 t
ORIGIN      
        1 atatggaact aaaataacat agttaaaaaa ttatagtaat tataattact ataaatatac
       61 aaaaaaagga ttaaaaatga aaaatacaat caaactagct ttattaggtg cagttattac
      121 tggtgtcttt tctgcttgct cttcagagcc aaaaacagtg caatattacg aagatccaaa
      181 aaatgctaca gaattagaag ctaaaatcaa agaatgcgat aaaaatgcta attctgcgaa
      241 aactgacaca gaatgtgcaa atgcttatga agcaa
//
LOCUS       DARAII010000419          272 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.608, whole genome shotgun sequence.
ACCESSION   DARAII010000419 DARAII010000000
VERSION     DARAII010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.608"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            complement(<1..>272)
                     /locus_tag="SB143_002358"
     CDS             complement(<1..>272)
                     /locus_tag="SB143_002358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEF9750831.1"
                     /translation="RGKIITNKKFSWPLGLSGAFQGSLTARDNAKFVARVYGYKGKEL
                     YEKVKFVEDFAELGKFFDEPMNTYSSGMSARIAFGLSMAFDFDYYL"
BASE COUNT           99 a           61 c           29 g           83 t
ORIGIN      
        1 attagataat aatcaaaatc aaaagccata ctaagcccaa aagctatcct agcactcata
       61 cccgaagaat aagtattcat aggctcatca aaaaatttac caagctctgc aaaatcttct
      121 acaaatttaa ctttttcgta aagctctttt cctttatagc catatactct agccacaaat
      181 ttagcattgt ctctagctgt taaagatcct tgaaaagcac cgcttaagcc taaaggccaa
      241 gaaaatttct tattagtaat aatttttccc ct
//
LOCUS       DARAII010000420          269 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.610, whole genome shotgun sequence.
ACCESSION   DARAII010000420 DARAII010000000
VERSION     DARAII010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.610"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>269
                     /locus_tag="SB143_002359"
     CDS             <1..>269
                     /locus_tag="SB143_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEF9750832.1"
                     /translation="TPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLEFEDSHI
                     RRLRDKLEDSILALPDTSVVGKREYRVPNTILASIKGVEGEAMLW"
BASE COUNT           77 a           46 c           70 g           76 t
ORIGIN      
        1 actcctcttt tgcatggcgg agaacatatg gggggcagga gaagcggtac attaaatgtg
       61 ccttatatag tggctatggg cgaggctttg cgtattgcaa acactatgct tgaatttgaa
      121 gactcacata ttcgccgttt aagagataaa cttgaagata gcattttagc ccttcctgat
      181 actagtgtcg tgggaaaaag agagtatcgc gtccctaata caattttagc aagtattaaa
      241 ggcgttgaag gcgaagctat gctttggga
//
LOCUS       DARAII010000421          269 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.denovo.611, whole genome shotgun sequence.
ACCESSION   DARAII010000421 DARAII010000000
VERSION     DARAII010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 269)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 269)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.denovo.611"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..>269
                     /locus_tag="SB143_002360"
     CDS             <1..>269
                     /locus_tag="SB143_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002836555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="HEF9750833.1"
                     /translation="DESRREANKELEYLKFEYHKVKDERDNLKTLFEAHKTKNVKLET
                     RLKEIGKWCEKNLSVEQLKEIFPLKAERIEKELKYQRAFENSFEQA"
BASE COUNT          128 a           28 c           49 g           64 t
ORIGIN      
        1 gatgaaagca ggagagaagc taacaaagag cttgaatatt taaaatttga atatcataaa
       61 gtcaaagatg aacgagataa tttaaaaact ttgtttgagg cacacaaaac aaaaaatgtt
      121 aaattagaaa ctcgactaaa agaaataggc aaatggtgtg aaaaaaattt aagcgtggag
      181 cagttaaaag aaatatttcc attaaaagcc gaaagaatag aaaaagagct taaatatcaa
      241 agagcttttg aaaattcttt tgaacaagc
//
LOCUS       DARAII010000422         4848 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.guided.124, whole genome shotgun sequence.
ACCESSION   DARAII010000422 DARAII010000000
VERSION     DARAII010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4848
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.guided.124"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            <1..435
                     /locus_tag="SB143_002361"
     CDS             <1..435
                     /locus_tag="SB143_002361"
                     /inference="COORDINATES: protein motif:HMM:NF012792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEF9750834.1"
                     /translation="VIMVRIATVNDAEQLNILNNEFNGEGETSIDNIGNSLVSNKQEV
                     VIVADEDDILVGFVCVQLKKSFCYDEYMPEITEVYVKPTYRNRGIASEMIIFAENYCS
                     KNYPLHKYELLTGQENLVAQSVYNKLGYVDDNELHLSKRVKR"
     gene            485..958
                     /locus_tag="SB143_002362"
                     /pseudo
     CDS             485..958
                     /locus_tag="SB143_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008666013.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
     gene            983..1753
                     /locus_tag="SB143_002363"
     CDS             983..1753
                     /locus_tag="SB143_002363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002578723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside phosphorylase"
                     /protein_id="HEF9750835.1"
                     /translation="MPLVKHDYPVLEYDTASKAVFQPGNGKKCFPAKAVFAFLGDEVE
                     NYAHTHDGIQIDEFESATRRYPIYECLYNQEKICLCPAPVGSAAAVQVLEYLIAAGVT
                     KIISVGSCGVLEDIPENRFLIPVSALRDEGTSYHYLPPSREVEISKAGINAIESALSQ
                     KNIPYWEVKTWTTDGFYRETVEMVQYRKEEGCQVVEMECSALAACAKFRKVTWAMLLF
                     SADTLADPHKYQEREWGKTSISIALELALDAVLSVVEE"
     gene            1778..2554
                     /locus_tag="SB143_002364"
     CDS             1778..2554
                     /locus_tag="SB143_002364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002578722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANT(9) family aminoglycoside
                     nucleotidyltransferase"
                     /protein_id="HEF9750836.1"
                     /translation="MNINEFPQQVNQVISIAETILQGQILGIYLYGSATMNGLRPDSD
                     IDILIITKQELSNSIRADLTKQLLKISGSVGCIEKRPLEVTIINQSDIVPLQFPPKCQ
                     YMYGEWLRGEMEAGEYPQACNDPDIMILLWQARKNSITLKGAESKELIPAIPFHEIKK
                     AIRFSLPGLISSFKGDERNVLLTLSRMWFTLVTEEITTKDVAAKWVILKLPERFPPLL
                     TTAKEAYLGNLSDEWETVEKEAMALVEYMKKQIEELLRTE"
     gene            2754..3299
                     /locus_tag="SB143_002365"
     CDS             2754..3299
                     /locus_tag="SB143_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002578721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEF9750837.1"
                     /translation="MNQGRIIVITGSPGTGKTTTASIVAKESNMDKSVHMHTDDFYHY
                     LSKGAIPPHLPESNEQNLVVIEAFLEAAKRYARGGYDVIVDGIVGPWFLEPWKALAQE
                     DYEVHYIVLRASKEETMKRAIERSKLDRETNIELVETMWKQFSGLGVYESNVIDTTTF
                     TIKDTVSAIKERVACGTSLLS"
     gene            3475..4341
                     /locus_tag="SB143_002366"
     CDS             3475..4341
                     /locus_tag="SB143_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001255868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase AadE"
                     /protein_id="HEF9750838.1"
                     /translation="MRSEKEVYDIVLNFAKTDKRIRMVTLEGSRTNTNIPPDDFQDFD
                     ITFFVTDMDSFTSDDKWLDIFGERLILQKPEDMELFPAVEKGFSYLMLFTDDVKIDLT
                     LLPLELIDEYFTWDKLVKLLLDKDNRIVKPPIPTDIDYHLQKPTQRMFDDCCNEFWNT
                     TTYVVKGLCRKEILFAIDHMNDIVRKELLRMISWLIGIKQGFHFSLGKNYKFMKQYVP
                     EELWERLMSTYNMDSYPHMWESFEQCMALFREVSSEVACQLDYQYPLYDEKISNYVIR
                     QKKKYGIEDDNK"
     gene            4713..4848
                     /locus_tag="SB143_002367"
                     /pseudo
     CDS             4713..4848
                     /locus_tag="SB143_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
BASE COUNT         1618 a          836 c         1101 g         1293 t
ORIGIN      
        1 gtaattatgg taagaattgc aacagtaaat gatgcagagc aattaaatat cttaaataac
       61 gaatttaatg gtgaaggtga aacaagcata gataatattg gaaattctct tgtgagtaat
      121 aaacaggagg ttgttatcgt tgctgatgaa gatgatatat tagtaggatt tgtatgtgtt
      181 caacttaaaa agtctttctg ctatgatgaa tatatgcctg aaattacgga agtgtatgtt
      241 aaaccgacat atagaaatag agggattgcg agtgaaatga ttatttttgc agaaaattat
      301 tgcagtaaga attatccact tcataagtac gaactcttaa caggacaaga aaatcttgtt
      361 gcacaatctg tatataataa acttggttat gtagatgata atgaacttca tttatcaaaa
      421 cgagttaaga gatagtcaaa ttccagtttg tgttgaatga cccgccaaaa atggtgcatc
      481 gttcaacagg aattttccta agctgataga tttgatacgg atttattttc aggacacagc
      541 ggcaaaaggc ataacagcaa gaaaccagct tatcgagata gcaacggctt ccctgtccga
      601 cctgatgaaa gaacacccgg aacaccgggc agaagcgaaa caggatttac agcttttgaa
      661 cgcccaaaag atgggggaac atgaagcgga gattgaaaaa atcaaaaatg tgttcctggc
      721 tatcctgcgg gatattaaga aagacataga caacggggaa cagccgggag aagctgtgac
      781 cgccgcgatg ttccaagcca tgcgggacgc attggcggaa cagaagcaaa acccgctttc
      841 cattgacgat gtagcggcga tggttgccgg acagatcgga cagcttacgc cgatggatga
      901 agaaactgcc gacctgttca agcagttggc aaaaaagatg atgaaaggaa tagaataata
      961 gcctgttatt cgagataata atatgccatt agtaaagcat gactaccctg ttttagagta
     1021 cgataccgca tcaaaagctg tttttcagcc gggaaatggg aaaaaatgtt ttcctgcaaa
     1081 agcagtgttt gcttttttag gagacgaggt tgaaaattat gcacataccc atgatggaat
     1141 acagatagat gaatttgaaa gtgcaacaag acgatatcct atttatgaat gtctttataa
     1201 tcaggagaaa atatgtctat gtccggctcc tgtgggaagt gctgctgccg tccaagtttt
     1261 agaatattta attgcagcgg gtgtaacaaa gattatttcc gtcggctcct gcggcgtatt
     1321 ggaagacatc ccggaaaata gatttttgat acctgtttct gcattgagag atgagggaac
     1381 atcttaccat tatcttcctc cctcccgaga agtagagatt tcaaaggctg gtataaatgc
     1441 gattgaatct gctttaagcc aaaagaatat accatattgg gaagttaaaa catggacaac
     1501 agacggtttt tatcgagaaa cagtagaaat ggttcagtat cggaaagaag agggatgtca
     1561 agtagtagaa atggaatgtt ccgcattggc ggcgtgtgca aaatttagaa aagttacatg
     1621 ggctatgctg cttttttcag ccgatactct tgcagaccct cataaatacc aagaaagaga
     1681 atggggaaaa acaagtatat ccatagcctt agaattagcc ttagacgctg ttttatcagt
     1741 tgttgaggag taaaaataaa tacatatagg agttacaatg aatataaatg aatttccaca
     1801 acaagtaaat caagttattt caatagcaga aaccatatta caaggtcaaa tattggggat
     1861 atatttatat ggttcagcaa caatgaatgg gctgcgtcca gatagtgata tagatatact
     1921 gataattact aaacaagaat tgagtaattc aatcagagca gatctaacaa agcaattatt
     1981 gaaaatttct ggctccgtag gctgtattga aaaaagacct ttagaggtaa ctattatcaa
     2041 tcaatctgat attgttccgt tgcaatttcc gccaaaatgt cagtatatgt atggtgaatg
     2101 gctaagggga gagatggaag caggagaata tccgcaagcc tgcaatgacc cagatataat
     2161 gattttatta tggcaagcaa gaaaaaatag cataactttg aagggggcgg aaagcaaaga
     2221 gcttattccc gctatcccat ttcacgaaat taaaaaagca attcggtttt ctttacctgg
     2281 tttgatttcc agctttaagg gtgatgaaag aaatgtgtta ttaaccttat cacgaatgtg
     2341 gtttacttta gtaacagaag aaatcacgac aaaagatgtt gccgcaaaat gggtaatttt
     2401 aaaattgccg gagagatttc cccccctgct aacaacggca aaggaagctt atttgggaaa
     2461 tttgtctgat gaatgggaga cagtagaaaa ggaagcgatg gcacttgtag aatatatgaa
     2521 aaaacaaatt gaggaattac ttagaacaga gtagcaaagt tagcggggcc aatcaacggt
     2581 caagatgaac ggcgcataaa tgcgccgccg ttgacagtcc cgcccgtctt tgctgatggg
     2641 caatcaaggc gggaaagccc taaaatggct tcccgcccat ttcaatcttg agagaagaaa
     2701 cgctccaaaa tcagaaagag agcggtaaat ctgaattgcg agggagaatg tagatgaatc
     2761 aaggaagaat tattgtgatt acaggttcgc cgggaacagg aaagacaaca actgcgtcga
     2821 ttgtcgcaaa agaatcaaac atggataaat ctgtgcatat gcacacagat gacttttatc
     2881 attatttgag taaaggggca ataccaccac atttgccaga atccaacgag caaaatctgg
     2941 ttgtcattga agccttttta gaagctgcaa agcgatatgc tcgtggcgga tatgatgtaa
     3001 ttgtagatgg gattgtcggg ccatggtttt tggagccatg gaaagctctt gcccaagaag
     3061 attacgaggt acactatatt gtattaagag cgagtaaaga agaaactatg aagcgagcta
     3121 tcgaacgctc aaagttagac agagaaacaa atattgaatt agttgaaaca atgtggaagc
     3181 aattttccgg tttgggagta tatgaatcaa atgtcataga cacaactaca ttcacaatta
     3241 aagatacggt ttccgcaata aaagaaagag ttgcatgtgg gacgtcttta ctatcttaga
     3301 cattcccatt tgtcaggaag atagcaaagc cagccgagcc agtcaacggt caagatgaac
     3361 ggcgcatttc atgcgccgcc gttgacagtc ccgcccgtct ttgctaaagg gtaatcaagg
     3421 cgggaaagcc ctaaaatggc ttcacaccta tttcaataat tggaggagat aaaaatgaga
     3481 tcagaaaagg aagtttatga tattgttttg aattttgcaa aaacagacaa acgcattcgc
     3541 atggttactt tggaaggatc tagaacaaat acaaatattc cgcctgatga ttttcaggat
     3601 tttgatatta ctttttttgt tacggatatg gacagcttca caagtgatga taaatggcta
     3661 gatatatttg gtgaaaggtt gattctgcaa aagccggaag atatggaatt atttccagct
     3721 gtagaaaagg gattttcata tttaatgctg tttactgatg atgttaagat agatttaact
     3781 ttgctgccgc tggaactgat agacgagtat tttacatggg ataaactggt aaagttactg
     3841 ttggataaag acaaccgtat cgtaaagccg ccaataccaa cggatataga ctaccacttg
     3901 cagaagccta ctcaaagaat gtttgacgat tgctgtaatg aattttggaa tactacaaca
     3961 tatgtagtaa agggcttatg ccgcaaagaa attctttttg ctattgacca tatgaatgat
     4021 atagtacgaa aagaattgct tcgcatgatt tcctggctga ttggtatcaa acagggattt
     4081 catttcagtt tgggaaaaaa ctataaattt atgaagcaat atgtcccaga ggaattgtgg
     4141 gaacgactta tgtccactta taatatggat tcctatcccc atatgtggga atcctttgaa
     4201 caatgtatgg cattgttccg ggaggtttcg tcagaagtgg catgccagtt ggattaccag
     4261 tatccactat atgatgaaaa aatcagtaat tatgtgattc ggcaaaagaa aaaatatggc
     4321 attgaagatg ataacaaata aaattttttc aatcgaaaaa atttattttg attattcaat
     4381 tttgaaaaac tgaatacctc aaaatcagaa agagcgcgga caagcacttt gagggattgg
     4441 ccgccttgtc cacccatcca gcggggcggc gggcggcggt caaggccggg tgtaaccccg
     4501 ttcatttcag ccttgacggt tgcccgctgt cctgctactt ttccgggagt gtggccacaa
     4561 cttcgggaca ctttgtccac aagtcggagc gtaggacgag ggacgggggc tttcatatac
     4621 ctgccgccgt tctctgaaaa caggccgatt ttttgctcat tcccattcgc aaaaattcag
     4681 cctgttttcc tgccggagca aacggggcgc aagaagcacc gcaccctatg ctccaaacaa
     4741 cgattgcagt aaagaaacct gaacagcggg aaatattgct tggggcactt acagaaattt
     4801 cagatggcga ccctctttta aaatattatg tggatactac aacgcatg
//
LOCUS       DARAII010000423         2240 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.guided.202, whole genome shotgun sequence.
ACCESSION   DARAII010000423 DARAII010000000
VERSION     DARAII010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.guided.202"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            3..1922
                     /gene="tet(O)"
                     /locus_tag="SB143_002368"
     CDS             3..1922
                     /gene="tet(O)"
                     /locus_tag="SB143_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HEF9750839.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQTMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEERQRLAYVRLYGGILH
                     LRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLP
                     QRERIENPLPMLQTTVEPSKPQQREMLLDALLEISDSDPLLQYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTSFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            1974..2147
                     /locus_tag="SB143_002369"
     CDS             1974..2147
                     /locus_tag="SB143_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEF9750840.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
BASE COUNT          751 a          385 c          504 g          600 t
ORIGIN      
        1 acatgaaaat aattaactta ggcattctgg ctcacgttga cgcaggaaag acaacattaa
       61 cggaaagttt attatatacc agtggtgcaa ttgcagaact agggagcgta gatgaaggca
      121 caacaaggac agatacaatg aatttggagc gtcaaagggg aatcactatc cagacagcag
      181 tgacatcttt tcagtgggag gatgtaaaag tcaacattat agatacgcca ggccatatgg
      241 attttttggc ggaagtatac cgttctttat ccgttttaga cggagcagta ttattagttt
      301 ctgcaaagga tggcatacag gcacagaccc gtatactgtt tcatgcacta cagacaatga
      361 agattccgac aatttttttc atcaataaaa ttgaccaaga ggggattgat ttgccaatgg
      421 tatatcggga aatgaaagca aagctttctt cggaaattat agtgaagcaa aaggttgggc
      481 agcatcccca tataaatgta acggacaatg acgatatgga acagtgggat gcggtaatta
      541 tgggaaacga tgaactatta gagaaatata tgtcagggaa accgtttaaa atgtcagaac
      601 tggaacagga agaaaacagg agattccaaa acggaacgtt atttcccgtt tatcacggaa
      661 gcgctaaaaa caatctgggg attcggcagc ttatagaagt aattgccagt aaattttatt
      721 catcaacgcc tgaaggtcaa tctgaactat gcgggcaggt ttttaagatt gaatattcgg
      781 aagaaagaca acgtcttgca tatgtacgcc tttatggcgg aatcctgcat ttgcgggatt
      841 cggttagaat atcggaaaag gaaaaaataa aaattacaga aatgtatact tcaataaatg
      901 gtgaattatg taaaattgat aaggcttatt ccggggaaat tgttattttg caaaatgagt
      961 ttttgaagct aaatagtgtt cttggagata caaagctatt gccacagaga gagagaattg
     1021 aaaatcctct ccctatgctc caaacaactg ttgaaccgag caaacctcaa caaagggaaa
     1081 tgttacttga tgcactttta gaaatctccg acagtgaccc gcttctacaa tattatgtgg
     1141 atactacaac gcatgagatt atactttctt ttttggggaa tgtgcagatg gaagtcattt
     1201 gtgccatcct tgaggaaaaa tatcatgtgg aggcagaaat aaaagagcct actgttatat
     1261 atatggaaag accgcttaga aaagcagaat ataccatcca catagaagtc ccgccaaatc
     1321 ctttctgggc ttctgtcggg ttgtccatag agccgctccc tattggaagc ggagtgcagt
     1381 atgaaagcag agtttcactt ggatatttaa atcaatcgtt ccaaaatgcg gttatggagg
     1441 gggttcttta tggctgcgag caggggctgt atggatggaa agtgacagac tgtaaaatct
     1501 gttttgaata tggattgtat tatagtcctg taagtacccc cgcagacttt cggctgcttt
     1561 cccctatcgt attggagcag gctttaaaaa aagcagggac agaactatta gagccatatc
     1621 tccactttga aatttatgca ccgcaggaat atctctcacg ggcgtatcat gatgctccaa
     1681 ggtattgtgc agatattgta agtactcaga taaagaatga cgaggtcatt ctgaaaggag
     1741 aaatccctgc tagatgtatt caagaataca ggaacgattt aacttctttc acaaatgggc
     1801 agggagtctg cttgacagag ttaaaaggat accagccagc tattggtaaa tttatttgcc
     1861 aaccccgccg cccgaatagc cgtatagata aggttcggca tatgttccac aagttagctt
     1921 aacagcttgc aaaagtcata taaaatgaga tttgaaagga ttagagacta attatgatga
     1981 aatgcgaatg gatattgtgt cctgtttgtg ggagcaaaac ccgtaataaa attaggaagg
     2041 acactgtttt ggagaattat cccctttatt gtccaaaatg cagacaagaa agattgatta
     2101 aagttgacaa cttgaagata actgtcatca aagagccaga cgcttaagac gcagagccga
     2161 tgaaattgtg gaacaattca cgaatcatcg gctctttttg tttcgtattt gaaagaacaa
     2221 actcaccaaa taaaaaaaac
//
LOCUS       DARAII010000424         2240 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.guided.203, whole genome shotgun sequence.
ACCESSION   DARAII010000424 DARAII010000000
VERSION     DARAII010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.guided.203"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            3..1922
                     /gene="tet(O)"
                     /locus_tag="SB143_002370"
     CDS             3..1922
                     /gene="tet(O)"
                     /locus_tag="SB143_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HEF9750841.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQTMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEERQRLAYVRLYGGILH
                     LRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSVLGDTKLLP
                     QRERIENPLPMLQTTVEPSKPQQREMLLDALLEISDSDPLLQYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTSFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            1974..2147
                     /locus_tag="SB143_002371"
     CDS             1974..2147
                     /locus_tag="SB143_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEF9750842.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
BASE COUNT          751 a          384 c          504 g          601 t
ORIGIN      
        1 acatgaaaat aattaactta ggcattctgg ctcacgttga cgcaggaaag acaacattaa
       61 cggaaagttt attatatacc agtggtgcaa ttgcagaact agggagcgta gatgaaggca
      121 caacaaggac agatacaatg aatttggagc gtcaaagggg aatcactatc cagacagcag
      181 tgacatcttt tcagtgggag gatgtaaaag tcaacattat agatacgcca ggccatatgg
      241 attttttggc ggaagtatac cgttctttat ccgttttaga cggagcagta ttattagttt
      301 ctgcaaagga tggcatacag gcacagaccc gtatactgtt tcatgcacta cagacaatga
      361 agattccgac aatttttttc atcaataaaa ttgaccaaga ggggattgat ttgccaatgg
      421 tatatcggga aatgaaagca aagctttctt cggaaattat agtgaagcaa aaggttgggc
      481 agcatcccca tataaatgta acggacaatg acgatatgga acagtgggat gcggtaatta
      541 tgggaaacga tgaactatta gagaaatata tgtcagggaa accgtttaaa atgtcagaac
      601 tggaacagga agaaaacagg agattccaaa acggaacgtt atttcccgtt tatcacggaa
      661 gcgctaaaaa caatctgggg attcggcagc ttatagaagt aattgccagt aaattttatt
      721 catcaacgcc tgaaggtcaa tctgaactat gcgggcaggt ttttaagatt gaatattcgg
      781 aagaaagaca acgtcttgca tatgtacgcc tttatggcgg aatcctgcat ttgcgggatt
      841 cggttagaat atcggaaaag gaaaaaataa aaattacaga aatgtatact tcaataaatg
      901 gtgaattatg taaaattgat aaggcttatt ccggggaaat tgttattttg caaaatgagt
      961 ttttgaagct aaatagtgtt cttggagata caaagctatt gccacagaga gagagaattg
     1021 aaaatcctct ccctatgctc caaacaactg ttgaaccgag caaacctcaa caaagggaaa
     1081 tgttacttga tgcactttta gaaatctccg acagtgaccc gcttctacaa tattatgtgg
     1141 atactacaac gcatgagatt atactttctt ttttggggaa tgtgcagatg gaagtcattt
     1201 gtgccattct tgaggaaaaa tatcatgtgg aggcagaaat aaaagagcct actgttatat
     1261 atatggaaag accgcttaga aaagcagaat ataccatcca catagaagtc ccgccaaatc
     1321 ctttctgggc ttctgtcggg ttgtccatag agccgctccc tattggaagc ggagtgcagt
     1381 atgaaagcag agtttcactt ggatatttaa atcaatcgtt ccaaaatgcg gttatggagg
     1441 gggttcttta tggctgcgag caggggctgt atggatggaa agtgacagac tgtaaaatct
     1501 gttttgaata tggattgtat tatagtcctg taagtacccc cgcagacttt cggctgcttt
     1561 cccctatcgt attggagcag gctttaaaaa aagcagggac agaactatta gagccatatc
     1621 tccactttga aatttatgca ccgcaggaat atctctcacg ggcgtatcat gatgctccaa
     1681 ggtattgtgc agatattgta agtactcaga taaagaatga cgaggtcatt ctgaaaggag
     1741 aaatccctgc tagatgtatt caagaataca ggaacgattt aacttctttc acaaatgggc
     1801 agggagtctg cttgacagag ttaaaaggat accagccagc tattggtaaa tttatttgcc
     1861 aaccccgccg cccgaatagc cgtatagata aggttcggca tatgttccac aagttagctt
     1921 aacagcttgc aaaagtcata taaaatgaga tttgaaagga ttagagacta attatgatga
     1981 aatgcgaatg gatattgtgt cctgtttgtg ggagcaaaac ccgtaataaa attaggaagg
     2041 acactgtttt ggagaattat cccctttatt gtccaaaatg cagacaagaa agattgatta
     2101 aagttgacaa cttgaagata actgtcatca aagagccaga cgcttaagac gcagagccga
     2161 tgaaattgtg gaacaattca cgaatcatcg gctctttttg tttcgtattt gaaagaacaa
     2221 actcaccaaa taaaaaaaac
//
LOCUS       DARAII010000425         2240 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.guided.204, whole genome shotgun sequence.
ACCESSION   DARAII010000425 DARAII010000000
VERSION     DARAII010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2240)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2240)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2240
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.guided.204"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            3..1922
                     /gene="tet(O)"
                     /locus_tag="SB143_002372"
     CDS             3..1922
                     /gene="tet(O)"
                     /locus_tag="SB143_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
                     /protein_id="HEF9750843.1"
                     /translation="MKIINLGILAHVDAGKTTLTESLLYTSGAIAELGSVDEGTTRTD
                     TMNLERQRGITIQTAVTSFQWEDVKVNIIDTPGHMDFLAEVYRSLSVLDGAVLLVSAK
                     DGIQAQTRILFHALQIMKIPTIFFINKIDQEGIDLPMVYREMKAKLSSEIIVKQKVGQ
                     HPHINVTDNDDMEQWDAVIMGNDELLEKYMSGKPFKMSELEQEENRRFQNGTLFPVYH
                     GSAKNNLGIRQLIEVIASKFYSSTPEGQSELCGQVFKIEYSEERQRLAYVRLYGGILH
                     LRDSVRISEKEKIKITEMYTSINGELCKIDKAYSGEIVILQNEFLKLNSILGNEMLLP
                     QRERIENPLPMLQTTVEPSKPQQREMLLDALLEISDSDPLLKYYVDTTTHEIILSFLG
                     NVQMEVICAILEEKYHVEAEIKEPTVIYMERPLRKAEYTIHIEVPPNPFWASVGLSIE
                     PLPIGSGVQYESRVSLGYLNQSFQNAVMEGVLYGCEQGLYGWKVTDCKICFEYGLYYS
                     PVSTPADFRLLSPIVLEQALKKAGTELLEPYLHFEIYAPQEYLSRAYHDAPRYCADIV
                     STQIKNDEVILKGEIPARCIQEYRNDLTSFTNGQGVCLTELKGYQPAIGKFICQPRRP
                     NSRIDKVRHMFHKLA"
     gene            1974..2147
                     /locus_tag="SB143_002373"
     CDS             1974..2147
                     /locus_tag="SB143_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEF9750844.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
BASE COUNT          751 a          380 c          506 g          603 t
ORIGIN      
        1 acatgaaaat aattaactta ggcattctgg ctcacgttga cgcaggaaag acaacattaa
       61 cggaaagttt attgtatacc agtggtgcaa ttgcagaact agggagcgta gatgaaggca
      121 caacaaggac agatacaatg aatttggagc gtcaaagggg aatcactatc cagacagcag
      181 tgacatcttt tcagtgggag gatgtaaaag tcaacattat agatacgcca ggccatatgg
      241 attttttggc ggaagtatac cgttctttat ccgtattaga cggagcagta ttattagttt
      301 ctgcaaagga tggcatacag gcacagaccc gtatactgtt tcatgcacta cagataatga
      361 agattccgac aatttttttc atcaataaaa ttgaccaaga ggggattgat ttgccaatgg
      421 tatatcggga aatgaaagca aagctttctt cggaaattat agtgaagcaa aaggttgggc
      481 agcatcccca tataaatgta acggacaatg acgatatgga acagtgggat gcggtaatta
      541 tgggaaacga tgaactatta gagaaatata tgtcagggaa accgtttaaa atgtcagaac
      601 tggaacagga agaaaacagg agattccaaa acggaacgtt atttcccgtt tatcacggaa
      661 gcgctaaaaa caatctgggg attcggcagc ttatagaagt gattgccagt aaattttatt
      721 catcaacgcc tgaaggtcaa tctgaactat gcgggcaggt ttttaagatt gaatattcgg
      781 aagaaagaca acgtcttgca tatgtacgcc tttatggcgg aatcctgcat ttgcgggatt
      841 cggttagaat atcggaaaag gaaaaaataa aaattacaga aatgtatact tcaataaatg
      901 gtgaattatg taaaattgat aaggcttatt ccggggaaat tgttattttg caaaatgagt
      961 ttttgaagct aaatagtatt ttggggaacg aaatgctatt gccacagaga gagagaattg
     1021 aaaatcctct ccctatgctc caaacaactg ttgaaccgag caaacctcaa caaagggaaa
     1081 tgttacttga tgcactttta gaaatctccg acagtgaccc tcttttaaaa tattatgtgg
     1141 atactacaac gcatgagatt atactttctt ttttggggaa tgtgcagatg gaagtcattt
     1201 gtgccattct tgaggaaaaa tatcatgtgg aggcagaaat aaaagagcct actgttatat
     1261 atatggaaag accgcttaga aaagcagaat ataccatcca catagaagtc ccgccaaatc
     1321 ctttctgggc ttctgtcggg ttgtccatag agccgctccc tattggaagc ggagtgcagt
     1381 atgaaagcag agtttcactt ggatatttaa atcaatcgtt ccaaaatgcg gttatggagg
     1441 gggttcttta tggctgcgag caggggctgt atggatggaa agtgacagac tgtaaaatct
     1501 gttttgaata tggattgtat tatagtcctg taagtacccc cgcagacttt cggctgcttt
     1561 cccctatcgt attggagcag gctttaaaaa aagcagggac agaactatta gagccatatc
     1621 tccactttga aatttatgca ccgcaggaat atctctcacg ggcgtatcat gatgctccaa
     1681 ggtattgtgc agatattgta agtactcaga taaagaatga cgaggtcatt ctgaaaggag
     1741 aaatccctgc tagatgtatt caagaataca ggaacgattt aacttctttc acaaatgggc
     1801 agggagtctg cttgacagag ttaaaaggat accagccagc tattggtaaa tttatttgcc
     1861 aaccccgccg cccgaatagc cgtatagata aggttcggca tatgttccac aagttagctt
     1921 aacagcttgc aaaagtcata taaaatgaga tttgaaagga ttagagacta attatgatga
     1981 aatgcgaatg gatattgtgt cctgtttgtg ggagcaaaac ccgtaataaa attaggaagg
     2041 acactgtttt ggagaattat cccctttatt gtccaaaatg cagacaagaa agattgatta
     2101 aagttgacaa cttgaagata actgtcatca aagagccaga cgcttaagac gcagagccga
     2161 tgaaattgtg gaacaattca cgaatcatcg gctctttttg tttcgtattt gaaagaacaa
     2221 actcaccaaa taaaaaaaac
//
LOCUS       DARAII010000426         2238 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.guided.205, whole genome shotgun sequence.
ACCESSION   DARAII010000426 DARAII010000000
VERSION     DARAII010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2238)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2238)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.guided.205"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            3..1920
                     /gene="tet(O)"
                     /locus_tag="SB143_002374"
                     /pseudo
     CDS             3..1920
                     /gene="tet(O)"
                     /locus_tag="SB143_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032490535.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance ribosomal protection
                     protein Tet(O)"
     gene            1972..2145
                     /locus_tag="SB143_002375"
     CDS             1972..2145
                     /locus_tag="SB143_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine-rich KTR domain-containing protein"
                     /protein_id="HEF9750845.1"
                     /translation="MMKCEWILCPVCGSKTRNKIRKDTVLENYPLYCPKCRQERLIKV
                     DNLKITVIKEPDA"
BASE COUNT          750 a          385 c          503 g          600 t
ORIGIN      
        1 acatgaaaat aattaactta ggcattctgg ctcacgttga cgcaggaaag acaacattaa
       61 cggaaagttt attatatacc agtggtgcaa ttgcagaact agggagcgta gatgaaggca
      121 caacaaggac agatacaatg aatttggagc gtcaaagggg aatcactatc cagacagcag
      181 tgacatcttt tcagtgggag gatgtaaaag tcaacattat agatacgcca ggccatatgg
      241 attttttggc ggaagtatac cgttctttat ccgttttaga cggagcagta ttattagttt
      301 ctgcaaagga tggcatacag gcacagaccc gtatactgtt tcatgcacta cagacaatga
      361 agattccgac aatttttttc atcaataaaa ttgaccaaga ggggattgat ttgccaatgg
      421 tatatcggga aatgaaagca aagctttctt cggaaattat agtgaagcaa aaggttgggc
      481 agcatcccca tataaatgta acggacaatg acgatatgga acagtgggat gcggtaatta
      541 tgggaaacga tgaactatta gagaaatata tgtcagggaa accgtttaaa atgtcagaac
      601 tggaacagga agaaaacagg agattccaaa acggaacgtt atttcccgtt tatcacggaa
      661 gcgctaaaaa caatctgggg attcggcagc ttatagaagt aattgccagt aaattttatt
      721 catcaacgcc tgaaggtcaa tctgaactat gcgggcaggt ttttaagatt gaatattcgg
      781 aagaaagaca acgtcttgca tatgtacgcc tttatggcgg aatcctgcat ttgcgggatt
      841 cggttagaat atcggaaaag gaaaaaataa aaattacaga aatgtatact tcaataaatg
      901 gtgaattatg taaaattgat aaggcttatt ccggggaaat tgttattttg caaaatgagt
      961 ttttgaagct aaatagtgtt cttggagata caaagctatt gccacagaga gagaattgaa
     1021 aatcctctcc ctatgctcca aacaactgtt gaaccgagca aacctcaaca aagggaaatg
     1081 ttacttgatg cacttttaga aatctccgac agtgacccgc ttctacaata ttatgtggat
     1141 actacaacgc atgagattat actttctttt ttggggaatg tgcagatgga agtcatttgt
     1201 gccatccttg aggaaaaata tcatgtggag gcagaaataa aagagcctac tgttatatat
     1261 atggaaagac cgcttagaaa agcagaatat accatccaca tagaagtccc gccaaatcct
     1321 ttctgggctt ctgtcgggtt gtccatagag ccgctcccta ttggaagcgg agtgcagtat
     1381 gaaagcagag tttcacttgg atatttaaat caatcgttcc aaaatgcggt tatggagggg
     1441 gttctttatg gctgcgagca ggggctgtat ggatggaaag tgacagactg taaaatctgt
     1501 tttgaatatg gattgtatta tagtcctgta agtacccccg cagactttcg gctgctttcc
     1561 cctatcgtat tggagcaggc tttaaaaaaa gcagggacag aactattaga gccatatctc
     1621 cactttgaaa tttatgcacc gcaggaatat ctctcacggg cgtatcatga tgctccaagg
     1681 tattgtgcag atattgtaag tactcagata aagaatgacg aggtcattct gaaaggagaa
     1741 atccctgcta gatgtattca agaatacagg aacgatttaa cttctttcac aaatgggcag
     1801 ggagtctgct tgacagagtt aaaaggatac cagccagcta ttggtaaatt tatttgccaa
     1861 ccccgccgcc cgaatagccg tatagataag gttcggcata tgttccacaa gttagcttaa
     1921 cagcttgcaa aagtcatata aaatgagatt tgaaaggatt agagactaat tatgatgaaa
     1981 tgcgaatgga tattgtgtcc tgtttgtggg agcaaaaccc gtaataaaat taggaaggac
     2041 actgttttgg agaattatcc cctttattgt ccaaaatgca gacaagaaag attgattaaa
     2101 gttgacaact tgaagataac tgtcatcaaa gagccagacg cttaagacgc agagccgatg
     2161 aaattgtgga acaattcacg aatcatcggc tctttttgtt tcgtatttga aagaacaaac
     2221 tcaccaaata aaaaaaac
//
LOCUS       DARAII010000427         1777 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.guided.220, whole genome shotgun sequence.
ACCESSION   DARAII010000427 DARAII010000000
VERSION     DARAII010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.guided.220"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            19..309
                     /locus_tag="SB143_002376"
     CDS             19..309
                     /locus_tag="SB143_002376"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEF9750846.1"
                     /translation="MNAFNLADDLIEPYRAIVDLVAHNNIASNIQLTKSERRELAHVL
                     HNACIVDGVKVNVMSAIDIMVESLKRIILDASTEKLKVPMILPIESMEGITE"
     gene            306..611
                     /gene="cas2"
                     /locus_tag="SB143_002377"
                     /pseudo
     CDS             306..611
                     /gene="cas2"
                     /locus_tag="SB143_002377"
                     /inference="COORDINATES: protein motif:HMM:TIGR01573.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
     gene            796..1620
                     /gene="apmA"
                     /locus_tag="SB143_002378"
     CDS             796..1620
                     /gene="apmA"
                     /locus_tag="SB143_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015059965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminocyclitol acetyltransferase ApmA"
                     /protein_id="HEF9750847.1"
                     /translation="MKTRLEQVLERYLNGREVVVWGVPTRRLLRALKPFKFRVDDRVD
                     PQYHYVVAVNDDDLSDFLSDEQSKSFQYANDYLTFDDEGGELPFERMCFNVPVGRQTY
                     FGDGVVGACKNGYIKSIGQFTSINGTAEIHVNHQLNMTFVSDDIQNFFNEESMAIFHE
                     KLRKDPKHPYAYSKEPMTIGSDVYIGAHAFINASTVTSIGDGAIIGSGAVVLENVPPF
                     AVVVGVPARIKRYRFSKEMIETLLRVKWWDWSIEEINENADALISPELFMKKYGGL"
BASE COUNT          573 a          303 c          413 g          488 t
ORIGIN      
        1 atacatcatg acaatcaatt gaatgcattt aatctggctg atgatttgat agaaccgtat
       61 cgtgcaatag ttgatttagt agcacacaac aatatagcgt caaacattca gttgacaaaa
      121 tcagaaagaa gagaattggc gcatgtatta cataatgcct gtattgtcga tggagtcaag
      181 gttaatgtaa tgtcggcgat tgatattatg gtggaaagtt tgaagaggat tattttagat
      241 gcttcgacgg aaaaattaaa ggtaccaatg attctgccga ttgaaagtat ggagggaatt
      301 acggaatgag attacttgtt attcttagtc caacagatag atggggaact aaaacagagt
      361 atacgaggct tcgaaagttt ttacataaag atggctattt gcgaatagca ccggaagcgt
      421 atatgcggat agtgcaaaat aggaaagcat ccgaaaaaca ttacagacga attgaagagt
      481 acgcacctaa aaccggaaca gtaagacttt tacgtttgac agagaagcaa tataataaca
      541 tatatttggt gacaggagaa gcagattatc aggaaaaagt agttggcata aacagtcata
      601 ttatgttata atgagacttg taacagacta attatctata tttgggaagt taataaaact
      661 ttgtactaaa tatagtggtt gaatgacccg ccaaaaatgg tgcatcgttc aacataaaag
      721 agcaaaataa cagaaaactc gaatttgtcg ggcagttttg aactggggat tacatatttt
      781 gggaggtaga tacttatgaa aaccagactt gaacaagttt tagaacgcta tctcaacgga
      841 cgcgaggtag ttgtatgggg tgttccgaca cgccgtttgc ttcgtgcatt aaaacctttt
      901 aaatttcgtg ttgacgatcg cgttgaccct caatatcatt atgttgttgc tgtaaacgat
      961 gacgacttat ccgacttttt atccgatgaa cagagcaagt cgtttcaata cgctaatgac
     1021 tatctgacgt ttgacgatga gggaggcgaa cttccgtttg aacgaatgtg cttcaatgtc
     1081 cccgttggca ggcaaacgta ttttggagac ggtgtcgtag gagcttgcaa aaacgggtat
     1141 atcaagagca tcggccaatt tacatcgatt aacggcacgg cagagatcca tgtgaaccat
     1201 cagttaaaca tgacctttgt aagcgacgat attcaaaact tcttcaatga agagagtatg
     1261 gctatattcc atgaaaagct gcgaaaggac ccgaaacacc cttatgctta cagcaaagaa
     1321 cctatgacca taggtagcga tgtttatatc ggcgcacatg cattcatcaa tgcttccact
     1381 gtgacaagca tcggtgacgg tgctataatc ggctcgggcg cagtggttct ggaaaatgtt
     1441 cctccttttg ctgtcgtcgt tggtgtccct gcgagaatca agcgttaccg cttctcaaag
     1501 gagatgattg aaaccctgct tcgtgtcaaa tggtgggact ggagtataga ggaaattaat
     1561 gaaaatgctg atgcgcttat atcacctgaa ctatttatga agaagtacgg gggtttatag
     1621 cgtatatgcg agtaatacga aatttgtata tcgtgagcat aacacgaagc cgacaaattc
     1681 caatttgtag ggaacagaaa atttcaggct tccagtgtgt ttgaaagtaa cgggcgattt
     1741 ggttgaatga cccgccaaaa atggtgcatc gttcaac
//
LOCUS       DARAII010000428         1251 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.guided.251, whole genome shotgun sequence.
ACCESSION   DARAII010000428 DARAII010000000
VERSION     DARAII010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1251
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.guided.251"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            129..923
                     /locus_tag="SB143_002379"
                     /note="aph(3')-IIIa"
     CDS             129..923
                     /locus_tag="SB143_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_032491780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside O-phosphotransferase
                     APH(3')-IIIa"
                     /protein_id="HEF9750848.1"
                     /translation="MAKMRISPELKKLIEKYRCVKDTEGMSPAKVYKLVGENENLYLK
                     MTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEY
                     EDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWE
                     EDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKW
                     YDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDELF"
BASE COUNT          395 a          203 c          306 g          347 t
ORIGIN      
        1 tttggttgaa tgacccgcca aaaatggtgc atcgttcaac caaggaacag tgaattggag
       61 ttcgtcttgt tataattagc ttcttggggt atctttaaat actgtagaaa agaggaagga
      121 aataataaat ggctaaaatg agaatatcac cggaattgaa aaaactgatc gaaaaatacc
      181 gctgcgtaaa agatacggaa ggaatgtctc ctgctaaggt atataagctg gtgggagaaa
      241 atgaaaacct atatttaaaa atgacggaca gccggtataa agggaccacc tatgatgtgg
      301 aacgggaaaa ggacatgatg ctatggctgg aaggaaagct gcctgttcca aaggtcctgc
      361 actttgaacg gcatgatggc tggagcaatc tgctcatgag tgaggccgat ggcgtccttt
      421 gctcggaaga gtatgaagat gaacaaagcc ctgaaaagat tatcgagctg tatgcggagt
      481 gcatcaggct ctttcactcc atcgacatat cggattgtcc ctatacgaat agcttagaca
      541 gccgcttagc cgaattggat tacttactga ataacgatct ggccgatgtg gattgcgaaa
      601 actgggaaga agacactcca tttaaagatc cgcgcgagct gtatgatttt ttaaagacgg
      661 aaaagcccga agaggaactt gtcttttccc acggcgacct gggagacagc aacatctttg
      721 tgaaagatgg caaagtaagt ggctttattg atcttgggag aagcggcagg gcggacaagt
      781 ggtatgacat tgccttctgc gtccggtcga tcagggagga tatcggggaa gaacagtatg
      841 tcgagctatt ttttgactta ctggggatca agcctgattg ggagaaaata aaatattata
      901 ttttactgga tgaattgttt tagtacctag atttagatgt ctaaaaagct ttaactacaa
      961 gctttttaga catctaatct tttctgaagt acatccgcaa ctgtccatac tctgatgttt
     1021 tatatctttt ctaaaagttc gctagataga gttctatatt agagatgtaa agagttttgg
     1081 tgaagaggtt gttgaatgac ccgccaaaaa tggtgcatcg ttcaacttca caagtttatg
     1141 gtataatttg aatgcgtaag tagagcaaga aatcgttgtt tggcgatttg gtaaatccca
     1201 ataaattaat tttataggga acaaaaaatt tgaatttgat aaggtgtaat t
//
LOCUS       DARAII010000429         1146 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter coli isolate 114
            SAMN15221523-rid18156283.guided.259, whole genome shotgun sequence.
ACCESSION   DARAII010000429 DARAII010000000
VERSION     DARAII010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN15221523
            Sequence Read Archive: SRR12070268
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter coli (Campylobacter hyoilei)
  ORGANISM  Campylobacter coli
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001751431.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001751431.1
            Genome Coverage       :: 157x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 01:16:47
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 2,380
            CDSs (total)                      :: 2,331
            Genes (coding)                    :: 2,270
            CDSs (with protein)               :: 2,270
            Genes (RNA)                       :: 49
            rRNAs                             :: 1, 2, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 2, 3 (16S, 23S)
            tRNAs                             :: 40
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 61
            CDSs (without protein)            :: 61
            Pseudo Genes (ambiguous residues) :: 0 of 61
            Pseudo Genes (frameshifted)       :: 34 of 61
            Pseudo Genes (incomplete)         :: 23 of 61
            Pseudo Genes (internal stop)      :: 7 of 61
            Pseudo Genes (multiple problems)  :: 3 of 61
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Campylobacter coli"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN15221523-rid18156283.guided.259"
                     /isolate="114"
                     /host="Sus scrofa domesticus"
                     /db_xref="taxon:195"
                     /country="Italy"
                     /collection_date="2012-12-13"
                     /collected_by="Istituto Zooprofilattico Sperimentale
                     dell'Abruzzo e del Molise 'G.Caporale'"
     gene            97..996
                     /gene="aadE-Cc"
                     /locus_tag="SB143_002380"
     CDS             97..996
                     /gene="aadE-Cc"
                     /locus_tag="SB143_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside 6-adenylyltransferase AadE-Cc"
                     /protein_id="HEF9750849.1"
                     /translation="MQNQDKFLKQFKKLALLDKNIRLVTLEGSRVNKKAKKDKYQDYD
                     ISFFVPLDKMKDFLGLNEKQNFNECKNLPKCILELEKSSYFKKILMLQMPECMEFYPP
                     DLPQNWISFLVLFESGVRLDLTIIPLEDLKNYYEFEPLSQALLDKNGLFTHTIPKAPF
                     SITHLSQRSFDDVCNEFYFLYSCLKKALLRKQFILSNHLLNSLRKALFDLLSFKIGLN
                     FGFEIWLGKEYTNILEFLEEKEVKIILKSFNTATLEHIKKARKKLEILFHKNAKFVAK
                     KSDFKLFPYRKNVKRYCKILGKL"
BASE COUNT          434 a          140 c          156 g          416 t
ORIGIN      
        1 tttttttata tttgttgcat tataaaatat aagagtaaca aagcttgcaa aatataaaat
       61 attattgtat aattaaaatc atttttaagg gcattgatgc aaaatcaaga taaattttta
      121 aaacaattta aaaaattagc acttttagat aaaaatatac gccttgttac acttgaaggc
      181 tcaagggtta ataaaaaagc gaagaaagat aaatatcaag actatgatat ttcatttttt
      241 gtgccacttg ataaaatgaa agatttttta gggcttaatg aaaagcaaaa ttttaacgaa
      301 tgtaaaaact tgccaaaatg tattttagag cttgaaaaat cttcatattt taaaaaaatt
      361 ttaatgcttc aaatgcctga atgtatggag ttttatccac ctgatttgcc acaaaattgg
      421 ataagttttt tagtgctttt tgaaagtgga gtgaggcttg atttaaccat tattccttta
      481 gaagatttga aaaattacta tgaatttgag cctttaagcc aagcgctttt ggataaaaat
      541 gggcttttta cgcacactat tccaaaagcc ccatttagca tcacacacct tagccaaaga
      601 agctttgatg atgtttgcaa tgagttttat tttctttata gttgcttaaa aaaagctctt
      661 ttaagaaagc agtttatttt gtcaaatcat ttgctaaatt ctttgagaaa agcacttttt
      721 gatttgctta gttttaaaat tggcttaaat tttggctttg aaatctggct gggaaaagaa
      781 tacactaata ttttagaatt tttagaagaa aaagaagtaa aaatcatctt aaaatctttt
      841 aacaccgcca cgctagaaca catcaaaaaa gcaagaaaaa agcttgaaat tttatttcat
      901 aaaaatgcta aatttgtagc aaaaaagagt gattttaagc tttttcctta ccgaaaaaat
      961 gtgaaaaggt attgtaaaat tttaggaaaa ttgtaattat tttcctttct agctttatct
     1021 taatctttat gcttgattat atatttttct aaagtatttt ttatctttat tgaaaccaat
     1081 atttaaattt ttccttgaac aattaatcta taaaaacaca aaaactaaca tttaatagtg
     1141 taaaac
//
